HHsearch alignment for GI: 254780843 and conserved domain: TIGR00880
>TIGR00880 2_A_01_02 Multidrug resistance protein; InterPro: IPR004734 Multidrug resistance proteins are molecular pumps that participate in a low energy shock adaptive response in some bacteria. They mediate cellular resistance to toxicants such as cycloheximide (CYH), 4-nitroquinoline N-oxide (4-NQO), cadmium, and hydrogen peroxide in yeast .; GO: 0015238 drug transporter activity, 0015893 drug transport, 0016021 integral to membrane.
Probab=99.83 E-value=1.2e-19 Score=114.81 Aligned_cols=134 Identities=21% Similarity=0.205 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 999999999999999999999985262899999999764321000000-1320246789998877756788876531000
Q gi|254780843|r 49 MLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTAT-IEITTFKVFLIALCILAIGVVIIQVALNPFI 127 (420)
Q Consensus 49 g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~ll~~~a-~~~~~~~~~~~~~~i~g~g~~~~~~~~~~~~ 127 (420)
T Consensus 1 g~~~~~yAl~q~~~~P~~~~l~~r~GRk~~~~~g~~~f~~~~~~~al~nP-h~~~~~L~i~R~~~G~~~~~~~~~g~a~~ 79 (148)
T TIGR00880 1 GLLVAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSQALFALSNP-HSNITVLIISRFLQGFGAAAALVAGAALI 79 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87999999999999999999884216289999999999999999884487-23799999999999998889999898888
Q ss_pred HCCCCHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0123035-7887766443110000345478888864---123420467765555577898
Q gi|254780843|r 128 SLLGDPN-TAVSRLTFAQFFNSLGTAIFPYIGSVLM---LGNLASPNTSMLADTMKDYQT 183 (420)
Q Consensus 128 ~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~ 183 (420)
T Consensus 80 aD~~~~~~~~~~a~g~~~~~~~~g~~lgP~~G~~~~~~~~~~~wr~~F~~~~~~~~~~~~ 139 (148)
T TIGR00880 80 ADIYPPEEERSVALGLMSAGIALGPILGPPLGGVLANVKQALGWRAPFLILAALALAAFI 139 (148)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 774264047889999999999999999999989998755401765899999999999999