HHsearch alignment for GI: 254780843 and conserved domain: TIGR00880
>TIGR00880 2_A_01_02 Multidrug resistance protein; InterPro: IPR004734 Multidrug resistance proteins are molecular pumps that participate in a low energy shock adaptive response in some bacteria. They mediate cellular resistance to toxicants such as cycloheximide (CYH), 4-nitroquinoline N-oxide (4-NQO), cadmium, and hydrogen peroxide in yeast .; GO: 0015238 drug transporter activity, 0015893 drug transport, 0016021 integral to membrane.
Probab=98.94 E-value=6.8e-08 Score=55.87 Aligned_cols=134 Identities=13% Similarity=0.045 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHC---CHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999987643100111111000000000124555545676899622---3368999-9999999999999999999996
Q gi|254780843|r 276 QHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYT---TGFISGW-SLIAVGLFNSIMFPTIFSLASA 351 (420)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~ 351 (420)
T Consensus 2 ~~~~~yAl~q~~~~P~~~~l~~r~GRk~~~~~g~~~f~~~~~~~al~nPh~~~~~L~i~R~~~G~~~~~~~~~g~a~~aD 81 (148)
T TIGR00880 2 LLVAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSQALFALSNPHSNITVLIISRFLQGFGAAAALVAGAALIAD 81 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999998842162899999999999999998844872379999999999999888999989888877
Q ss_pred HHHHH-HHH-HHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 30156-569-99999-999999999999999999---961237999999999999999999853
Q gi|254780843|r 352 SLEDQ-ASG-GSGII-CTTISGGVIIPLGVGYLV---DIASLRDAMFVPAVCYIIIAIYGIYCC 409 (420)
Q Consensus 352 ~~~~~-~~~-~~~~~-~~~~~g~~i~p~i~G~l~---d~~g~~~~~~~~~~~~~~~~~~~~~~~ 409 (420)
T Consensus 82 ~~~~~~~~~~a~g~~~~~~~~g~~lgP~~G~~~~~~~~~~~wr~~F~~~~~~~~~~~~~~~~~~ 145 (148)
T TIGR00880 82 IYPPEEERSVALGLMSAGIALGPILGPPLGGVLANVKQALGWRAPFLILAALALAAFILLAFLL 145 (148)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4264047889999999999999999999989998755401765899999999999999998860