HHsearch alignment for GI: 254780843 and conserved domain: TIGR00882

>TIGR00882 2A0105 oligosaccharide:H+ symporter; InterPro: IPR000576 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) . The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli .; GO: 0005403 hydrogen:sugar symporter activity, 0006810 transport, 0016020 membrane.
Probab=99.73  E-value=1.4e-15  Score=94.34  Aligned_cols=369  Identities=13%  Similarity=0.090  Sum_probs=215.6

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH---HHCCHHC
Q ss_conf             9999998738998999-99980999899999999999999999999999998526289999999976432---1000000
Q gi|254780843|r   21 FLFGGITSLNSILVPK-LQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLG---CILFTAT   96 (420)
Q Consensus        21 f~~g~~~~~~~~~~p~-l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~i~---~ll~~~a   96 (420)
T Consensus        12 FlyFfim~~~fpf~piWL~~~~gl~kt~tGi~fs~~sl~si~Fqp~~G~~sDkLGLkK~LlW~is~lLvlfaPFfiyVf~   91 (397)
T TIGR00882        12 FLYFFIMSAYFPFFPIWLKDVNGLTKTETGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISLLLVLFAPFFIYVFA   91 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999885334778842254777635778888999999876664002012355068999999999986159989867


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             13202467899988777567888765310000123035788--7766443110000345478888864123420467765
Q gi|254780843|r   97 IEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAV--SRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSML  174 (420)
Q Consensus        97 ~~~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~  174 (420)
T Consensus        92 PLL~~--Ni~~G~l~Gg~y~G~~f~AG~Ga~eayiEkvsR~~~FEYG~aR~fGc~GwAlcA~~~GIlF~i~--p~~~FWl  167 (397)
T TIGR00882        92 PLLQS--NILVGALVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFSID--PSIVFWL  167 (397)
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHCCEEEECC--CCHHHHH
T ss_conf             79998--9999999869998778732573468889787524798400178887213787765303003006--6414578


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             55557789888642001121100134555543210123101233210001111222111111100011100013556778
Q gi|254780843|r  175 ADTMKDYQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCIFLYVGAEVAIG  254 (420)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (420)
T Consensus       168 ~S~~a~~l~~ll~-~~k~~-----------~~~~A~V~~a~gAn~~~~~~~~~~~lFr~r~~W~f~lyvvGv~~~YdvFD  235 (397)
T TIGR00882       168 GSGFALILMLLLM-VAKPK-----------SSDSAEVANALGANASAISLKDALELFRQRRLWVFVLYVVGVACVYDVFD  235 (397)
T ss_pred             HHHHHHHHHHHHH-HHCCC-----------CCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEEEEECCHH
T ss_conf             8999999999997-61699-----------87268999987338000167899997179986578886661000231012


Q ss_pred             HH-HHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             99-99875420-12221012468889999876431001111110000000001245555456768996223368999999
Q gi|254780843|r  255 SI-MANYLMRH-DTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYTTGFISGWSLI  332 (420)
Q Consensus       255 ~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (420)
T Consensus       236 QQlFa~Ff~~fF~~~~~Gtr~fGy~tt~ge~lnA~iMf~~P~iiNRiG~KNaLLiag~IM~~RI~gssf~~~~~ev~~lK  315 (397)
T TIGR00882       236 QQLFAVFFKGFFATPQQGTRVFGYVTTAGELLNALIMFCAPLIINRIGAKNALLIAGLIMAVRILGSSFATTAVEVVILK  315 (397)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             10037786554057677627665301288999999998703776166715899999999999999888776699999999


Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999----99999963015656999---99999999999999999999996123799999999999999999
Q gi|254780843|r  333 AVGLFNSIMFPT----IFSLASASLEDQASGGS---GIICTTISGGVIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYG  405 (420)
Q Consensus       333 ~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~g~~i~p~i~G~l~d~~g~~~~~~~~~~~~~~~~~~~  405 (420)
T Consensus       316 ~L---H~~EvPfllvg~FKYi~~~F~~rLSaTiyLiGF~~~kqla~i~LS~~~G~lyd~~Gfq~~yl~lg~i~l~~t~is  392 (397)
T TIGR00882       316 ML---HALEVPFLLVGAFKYITSVFDKRLSATIYLIGFQFAKQLAAILLSTFAGNLYDRIGFQTAYLVLGCIVLSFTLIS  392 (397)
T ss_pred             HH---HHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             98---887626898645541111115522567889999998888899999877767630244799999999999999998


Q ss_pred             HHH
Q ss_conf             985
Q gi|254780843|r  406 IYC  408 (420)
Q Consensus       406 ~~~  408 (420)
T Consensus       393 ~Ft  395 (397)
T TIGR00882       393 VFT  395 (397)
T ss_pred             HHH
T ss_conf             762