HHsearch alignment for GI: 254780843 and conserved domain: TIGR00882
>TIGR00882 2A0105 oligosaccharide:H+ symporter; InterPro: IPR000576 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) . The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli .; GO: 0005403 hydrogen:sugar symporter activity, 0006810 transport, 0016020 membrane.
Probab=99.73 E-value=1.4e-15 Score=94.34 Aligned_cols=369 Identities=13% Similarity=0.090 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH---HHCCHHC
Q ss_conf 9999998738998999-99980999899999999999999999999999998526289999999976432---1000000
Q gi|254780843|r 21 FLFGGITSLNSILVPK-LQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLG---CILFTAT 96 (420)
Q Consensus 21 f~~g~~~~~~~~~~p~-l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~i~---~ll~~~a 96 (420)
T Consensus 12 FlyFfim~~~fpf~piWL~~~~gl~kt~tGi~fs~~sl~si~Fqp~~G~~sDkLGLkK~LlW~is~lLvlfaPFfiyVf~ 91 (397)
T TIGR00882 12 FLYFFIMSAYFPFFPIWLKDVNGLTKTETGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISLLLVLFAPFFIYVFA 91 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999885334778842254777635778888999999876664002012355068999999999986159989867
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 13202467899988777567888765310000123035788--7766443110000345478888864123420467765
Q gi|254780843|r 97 IEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAV--SRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSML 174 (420)
Q Consensus 97 ~~~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 174 (420)
T Consensus 92 PLL~~--Ni~~G~l~Gg~y~G~~f~AG~Ga~eayiEkvsR~~~FEYG~aR~fGc~GwAlcA~~~GIlF~i~--p~~~FWl 167 (397)
T TIGR00882 92 PLLQS--NILVGALVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFSID--PSIVFWL 167 (397)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHCCEEEECC--CCHHHHH
T ss_conf 79998--9999999869998778732573468889787524798400178887213787765303003006--6414578
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 55557789888642001121100134555543210123101233210001111222111111100011100013556778
Q gi|254780843|r 175 ADTMKDYQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCIFLYVGAEVAIG 254 (420)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (420)
T Consensus 168 ~S~~a~~l~~ll~-~~k~~-----------~~~~A~V~~a~gAn~~~~~~~~~~~lFr~r~~W~f~lyvvGv~~~YdvFD 235 (397)
T TIGR00882 168 GSGFALILMLLLM-VAKPK-----------SSDSAEVANALGANASAISLKDALELFRQRRLWVFVLYVVGVACVYDVFD 235 (397)
T ss_pred HHHHHHHHHHHHH-HHCCC-----------CCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEEEEECCHH
T ss_conf 8999999999997-61699-----------87268999987338000167899997179986578886661000231012
Q ss_pred HH-HHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99-99875420-12221012468889999876431001111110000000001245555456768996223368999999
Q gi|254780843|r 255 SI-MANYLMRH-DTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYTTGFISGWSLI 332 (420)
Q Consensus 255 ~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (420)
T Consensus 236 QQlFa~Ff~~fF~~~~~Gtr~fGy~tt~ge~lnA~iMf~~P~iiNRiG~KNaLLiag~IM~~RI~gssf~~~~~ev~~lK 315 (397)
T TIGR00882 236 QQLFAVFFKGFFATPQQGTRVFGYVTTAGELLNALIMFCAPLIINRIGAKNALLIAGLIMAVRILGSSFATTAVEVVILK 315 (397)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10037786554057677627665301288999999998703776166715899999999999999888776699999999
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999----99999963015656999---99999999999999999999996123799999999999999999
Q gi|254780843|r 333 AVGLFNSIMFPT----IFSLASASLEDQASGGS---GIICTTISGGVIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYG 405 (420)
Q Consensus 333 ~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~g~~i~p~i~G~l~d~~g~~~~~~~~~~~~~~~~~~~ 405 (420)
T Consensus 316 ~L---H~~EvPfllvg~FKYi~~~F~~rLSaTiyLiGF~~~kqla~i~LS~~~G~lyd~~Gfq~~yl~lg~i~l~~t~is 392 (397)
T TIGR00882 316 ML---HALEVPFLLVGAFKYITSVFDKRLSATIYLIGFQFAKQLAAILLSTFAGNLYDRIGFQTAYLVLGCIVLSFTLIS 392 (397)
T ss_pred HH---HHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98---887626898645541111115522567889999998888899999877767630244799999999999999998
Q ss_pred HHH
Q ss_conf 985
Q gi|254780843|r 406 IYC 408 (420)
Q Consensus 406 ~~~ 408 (420)
T Consensus 393 ~Ft 395 (397)
T TIGR00882 393 VFT 395 (397)
T ss_pred HHH
T ss_conf 762