HHsearch alignment for GI: 254780843 and conserved domain: TIGR00897
>TIGR00897 2A0118 polyol permease; InterPro: IPR004748 Proteins in this entry are mostly known or predicted polyol transporters. The best characterised of these proteins are DalT and RbtT from Klebsiella pneumoniae, which tranpsort D-arabinatol and ribotol respectively. Like other members of the Major Facilitator Superfamily (MFS), DalT and RbtT appear to be secondary transporters capable only of transporting solutes in response to chemiosmotic ion gradients . They contain a total of twelve predicted transmembrane helices; six in the N-terminal portion of the protein, and six in the C-terminal portion. Residues defining substrate specificity lie in the N-terminal region of these proteins.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=98.84 E-value=2.9e-08 Score=57.74 Aligned_cols=138 Identities=13% Similarity=0.124 Sum_probs=107.6
Q ss_pred HHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHCCHHCCCC--CHHHHHH
Q ss_conf 99899-9999809998999999999999999999999999985262899-999999764321000000132--0246789
Q gi|254780843|r 31 SILVP-KLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKG-ICTGLLIMSLGCILFTATIEI--TTFKVFL 106 (420)
Q Consensus 31 ~~~~p-~l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~-l~~~~~~~~i~~ll~~~a~~~--~~~~~~~ 106 (420)
T Consensus 250 avflPmm~~a~~G~StseWLQiWg~~Ff~nIvfN~ifGivGdKlGW~~~V~WFGgvG~giftlalYY~P~~~Ghs~av~~ 329 (411)
T TIGR00897 250 AVFLPMMFLAELGFSTSEWLQIWGTLFFTNIVFNVIFGIVGDKLGWKNTVIWFGGVGCGIFTLALYYIPQFIGHSFAVVL 329 (411)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67635899976387402589999999999999999997541446873166763764589999999865665225899999
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 9988777567888765310000123035788776644311000034547888886412342046
Q gi|254780843|r 107 IALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPN 170 (420)
Q Consensus 107 ~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 170 (420)
T Consensus 330 iia~~~G~~lAgyVPl~-A-~~Ptlapk~KGAA~SVlNL~aGlsaF~aPaia~lfig~~ga~GV 391 (411)
T TIGR00897 330 IIAIIYGILLAGYVPLA-A-VLPTLAPKDKGAAMSVLNLSAGLSAFVAPAIAVLFIGLLGAIGV 391 (411)
T ss_pred HHHHHHHHHHHHHHHHH-H-HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999998663488-7-42234899873156488888628878889999999850020279