HHsearch alignment for GI: 254780843 and conserved domain: TIGR00898
>TIGR00898 2A0119 cation transport protein; InterPro: IPR004749 Organic cation transport proteins belong to this group. The protein from human is a sodium-dependent, high affinity carnitine transporter that also transports organic cations without the involvement of sodium. It is involved in the active cellular uptake of carnitine.; GO: 0015075 ion transmembrane transporter activity, 0006811 ion transport, 0016021 integral to membrane.
Probab=99.97 E-value=9.6e-29 Score=160.40 Aligned_cols=379 Identities=13% Similarity=0.079 Sum_probs=238.1
Q ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHH
Q ss_conf 989999998099---98999999999999999999999999985262899999999764321000000132024678999
Q gi|254780843|r 32 ILVPKLQNSFSL---TYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIA 108 (420)
Q Consensus 32 ~~~p~l~~~~~~---s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~ll~~~a~~~~~~~~~~~~ 108 (420)
T Consensus 123 ~~~stiv~EW~LvC~~~~~~~L~~s~~~~G~L~Gs~~~G~lsDrfGRk~~L~~s~l~~~~~g~~~a~S---P~~~~~~vf 199 (557)
T TIGR00898 123 TFSSTIVTEWDLVCEDAWKVDLTQSLFFVGVLLGSLVLGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS---PNYTVFLVF 199 (557)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_conf 44873588527430025776688999999999868888778635204899999999998878651275---689999999
Q ss_pred HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-H
Q ss_conf 8877756788876531000012303578877664-4311000034547888886412342046776555557789888-6
Q gi|254780843|r 109 LCILAIGVVIIQVALNPFISLLGDPNTAVSRLTF-AQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKDYQTDT-A 186 (420)
Q Consensus 109 ~~i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 186 (420)
T Consensus 200 R~L~G~~~~g~~~~~~~L~~E~~~~~~R~~~~~lG~~~~~~~G~~~L~l~AY~~~~S-gWR~L~l~~s~P~~~~~~~~rw 278 (557)
T TIGR00898 200 RLLVGMGIAGIWVVAVVLNTEFLPKKQRAIVGILGIQVFFSLGLLLLPLVAYFIPDS-GWRWLQLAVSLPLFIFLLLSRW 278 (557)
T ss_pred HHHHHHHHCCEEEEEEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999613100202577776775327366157661035888887699987788653785-5899999999889999999877
Q ss_pred HHHCCCCCC---CHHHHHHHHHH------HH------CC----CCC-CHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 420011211---00134555543------21------01----231-012332100011112221111111000111000
Q gi|254780843|r 187 RVISQMYLV---LAIILFLATWL------CW------MQ----RNS-FADHKRNHISFLKTLDILANPRFTMGAVCIFLY 246 (420)
Q Consensus 187 ~~~~~~~~~---~~~~~~~~~~~------~~------~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (420)
T Consensus 279 ~vpESpRWL~~~gr~~~A~~~L~~~A~~Ng~~~eg~~~~~~~~~~~~~~~~~~~k~~~~~~~~L~rtp~lr~~tl~l~~~ 358 (557)
T TIGR00898 279 FVPESPRWLISQGRIEEALKILQRVAKINGKKEEGGKLPAEVLSLSLEKELSSKKAQKPSFLDLFRTPQLRKTTLILMML 358 (557)
T ss_pred HHHCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHH
T ss_conf 71013125642485789999999985337861553326603330025666542200143215540687899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCC---------------------HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHH
Q ss_conf 135567789999875420122210---------------------12468889999876431001111110000000001
Q gi|254780843|r 247 VGAEVAIGSIMANYLMRHDTLHLD---------------------GISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTL 305 (420)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (420)
T Consensus 359 Wf~-~~f~YyGL--~l~~~~l~~n~D~C~~~~~~~~~~~~~C~~L~~~~Y~~~~~~glve~Pa~~~~~l~i~~LgRr~~~ 435 (557)
T TIGR00898 359 WFT-TAFSYYGL--VLDLENLGGNGDVCSISLFKKAVEAKVCEYLSKEIYLDLFISGLVELPAKLITLLLIDRLGRRYTM 435 (557)
T ss_pred HHH-HHHHHHHH--HHHHHCCCCCCCEECCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 999-88999877--753211478744002310004410022211008999999999998889999889887621776799
Q ss_pred HHHHHHHHHHHHHHHHCCHH------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q ss_conf 24555545676899622336------8999999999-999999999999999630156569--99999999999999999
Q gi|254780843|r 306 CAFATTACSLVILSSYTTGF------ISGWSLIAVG-LFNSIMFPTIFSLASASLEDQASG--GSGIICTTISGGVIIPL 376 (420)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~i~p~ 376 (420)
T Consensus 436 a~~~~~ag~~~l~~~~~~~~~~~~~G~l~t~L~~~g~~~~~~aF~~~ylyt~ELYPT~~Rn~G~g~~S~m~r~G~i~~P~ 515 (557)
T TIGR00898 436 AASLLLAGVALLLLLFVPEELYFYNGWLRTALAVLGKAGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPF 515 (557)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999986312355306999999999999888872542220565015899999999999999875799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999961237999999999999999999853111020127
Q gi|254780843|r 377 GVGYLVDIASLRDAMFVPAVCYIIIAIYGIYCCYKENNFEQN 418 (420)
Q Consensus 377 i~G~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (420)
T Consensus 516 ~~-~~~~~~~~~lP~~~fG~~~~l~~~~~l~LPEt~g~~Lpe 556 (557)
T TIGR00898 516 LV-YRLGEVWLFLPLVIFGVLALLAGILTLLLPETKGVPLPE 556 (557)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99-998554454589999999999999988521016888889