HHsearch alignment for GI: 254780843 and conserved domain: pfam02487

>pfam02487 CLN3 CLN3 protein. This is a family of proteins from the CLN3 gene. A missense mutation of glutamic acid (E) to lysine (K) at position 295 in the human protein has been implicated in Juvenile neuronal ceroid lipofuscinosis (Batten disease).
Probab=95.87  E-value=0.03  Score=27.59  Aligned_cols=33  Identities=9%  Similarity=0.093  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999996301565699
Q gi|254780843|r  328 GWSLIAVGLFNSIMFPTIFSLASASLEDQASGG  360 (420)
Q Consensus       328 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  360 (420)
T Consensus       346 f~lif~eGLlGGa~YVNtF~~I~~~v~~~~rEF  378 (409)
T pfam02487       346 FLLILFEGLLGGASYVNTFHNIHKEVDPDVREF  378 (409)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHEEE
T ss_conf             999999874352677748898750298767130