HHsearch alignment for GI: 254780843 and conserved domain: pfam03825
>pfam03825 Nuc_H_symport Nucleoside H+ symporter.
Probab=99.94 E-value=6.9e-23 Score=131.02 Aligned_cols=373 Identities=14% Similarity=0.074 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHCCHHC
Q ss_conf 999999999873899899999980999899999999999999999999999998526-2899999999764321000000
Q gi|254780843|r 18 ILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYG-YIKGICTGLLIMSLGCILFTAT 96 (420)
Q Consensus 18 ~~ff~~g~~~~~~~~~~p~l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~G-rr~~l~~~~~~~~i~~ll~~~a 96 (420)
T Consensus 9 ~~yFl~F~~~G~~~P~~~~yL~~~Gfs~~qIG~i~a~~~i~~iv~p~~wG~lADr~~~~~~vl~~~~~~~~~~~~~~--- 85 (400)
T pfam03825 9 VMMFLQLFIWGAWLVTLGSYMGMTGFAGAQIGLVYSSWGIAAIVMPFLSGIIADRWFSAERVLAVCHLIGAVALFGA--- 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---
T ss_conf 99999999999999999999860798999999999999999999999999998345647899999999999999999---
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 13202467899988777567888765310000123035788776644311000034547888886412342046776555
Q gi|254780843|r 97 IEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLAD 176 (420)
Q Consensus 97 ~~~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~ 176 (420)
T Consensus 86 ~~~~~f~~~~~~~~~~~~~~~p~lpL~dsi~~~~l~~~--~~~Yg~iRlwGSiGfi~a~~~~g~~~~~~~~~~~~~~~~~ 163 (400)
T pfam03825 86 AQVTTFWPFFAVYLVNSLAYMPTLALTNSIAFANLRDP--VTDFPPIRVGGTVGWILASWPFVMWLVSLATVELSRWQLL 163 (400)
T ss_pred HHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 98524999999999999998350578999999971275--6778720357649999999889999999501205679999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 55778988864200112110013455554321012310123321000111122211111110001110001355677899
Q gi|254780843|r 177 TMKDYQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCIFLYVGAEVAIGSI 256 (420)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (420)
T Consensus 164 i~~~~~~ll~~--------------~~~~lp~~p~~~~~~~~~~~~~~~~~~~lLk~~~~~~Fl~~~~l~~~~h~~yy~F 229 (400)
T pfam03825 164 IAAGVSALLAG--------------YALTLPHTPAKRKADDSVDKLLGLDAFKLLKNPRMAVFFVFSFLLGAILQIYNVF 229 (400)
T ss_pred HHHHHHHHHHH--------------HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999--------------9973888887665554200020257999965914999999999999899999998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCHHH------HHHH
Q ss_conf 9987542012221012468889999876431001111110000000001245555456768996223368------9999
Q gi|254780843|r 257 MANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYTTGFI------SGWS 330 (420)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 330 (420)
T Consensus 230 ~s~yl~~~g--g~~~~~~~~~~~lgvvaEI~~f~~~~~ll~r~g~~~lll~a~~~~~lR~~l~a~~~~~~~~~~~~l~l~ 307 (400)
T pfam03825 230 ANAFLTNFV--GFAVKLASIVLSLGQVAEIIFMLTLPFFLKRFGIKVVMLVGVVAWALRFAFFAYGADPVPFGVALLLLS 307 (400)
T ss_pred HHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999847--726779999999999999999999999999848999999999999999999994267403799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-H-HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q ss_conf 999999999999999999996301565-69999999-9-99999999999999999612------379999999999999
Q gi|254780843|r 331 LIAVGLFNSIMFPTIFSLASASLEDQA-SGGSGIIC-T-TISGGVIIPLGVGYLVDIAS------LRDAMFVPAVCYIII 401 (420)
Q Consensus 331 ~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~g~~i~p~i~G~l~d~~g------~~~~~~~~~~~~~~~ 401 (420)
T Consensus 308 q~LHg~tfg~f~~a~~~~v~~~~p~~~ra~~Q~l~~~~~~G~g~~iG~~~~G~l~~~f~~~~~~~w~~~w~~~~~~~~~~ 387 (400)
T pfam03825 308 MIVHGVAYDFFNITGYIFVDKEVPKDIRASAQGLFNLMINGVGNVLGSILSGMLVGMFTTDGSVDWQTLWLVFAGMALAL 387 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999868855387999999999970899999999999999970677687399999999999999
Q ss_pred H-HHHHHHHHH
Q ss_conf 9-999985311
Q gi|254780843|r 402 A-IYGIYCCYK 411 (420)
Q Consensus 402 ~-~~~~~~~~~ 411 (420)
T Consensus 388 ~~~f~~~f~~~ 398 (400)
T pfam03825 388 AVLFMLFFRYP 398 (400)
T ss_pred HHHHHHHHCCC
T ss_conf 99999983688