RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780843|ref|YP_003065256.1| glucose/galactose transporter
[Candidatus Liberibacter asiaticus str. psy62]
(420 letters)
>gnl|CDD|31081 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 256 bits (656), Expect = 7e-69
Identities = 148/405 (36%), Positives = 226/405 (55%), Gaps = 9/405 (2%)
Query: 7 RNIQCTKIYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPA 66
++++ + + LFFL+G IT LN IL+P L+ F LTY +A L++ FF YF S+PA
Sbjct: 9 KSVKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPA 68
Query: 67 GMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPF 126
G+ I++ GY GI GLL+ ++G LF ++ FL+AL ILA G+ +++ A NP+
Sbjct: 69 GLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPY 128
Query: 127 ISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKDYQTDTA 186
++LLG P +A RL AQ FN LG + P +GS L+L +A +M A + + A
Sbjct: 129 VTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA---LTMSAAQILAIKGADA 185
Query: 187 RVISQMYLVLAIILFLATWLCWMQRN---SFADHKRNHISFLKTLDILANPRFTMGAVCI 243
+ YL+LA +L L L + + A + N +G + I
Sbjct: 186 SSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAI 245
Query: 244 FLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEK 303
FLYVGAEVAIGS + +YL + L L+ A + + +W M+GRFIG+ ++SR EK
Sbjct: 246 FLYVGAEVAIGSFLVSYL--EELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK 303
Query: 304 TLCAFATTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGGSGI 363
L +A A L++ + G ++ ++L +GLFNSIMFPTIFSLA +L + S GSG+
Sbjct: 304 YLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVGSGL 363
Query: 364 ICTTISGGVIIPLGVGYLVDIASLRDAMF-VPAVCYIIIAIYGIY 407
+ I GG IIP G + D+ ++ VP +CY+ + + +
Sbjct: 364 LVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFFALI 408
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated..
Length = 352
Score = 70.8 bits (174), Expect = 7e-13
Identities = 77/394 (19%), Positives = 142/394 (36%), Gaps = 53/394 (13%)
Query: 14 IYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRY 73
+ +F+ FFL G L S +P L L+ QA L+ + F Y S+ AG R+
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF 61
Query: 74 GYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDP 133
G + + GLL+ +LG +L ++ + L+ +L +G + A I+ P
Sbjct: 62 GRRRVLLLGLLLFALGSLLLAFA---SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118
Query: 134 NTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKDYQTDTARVISQMY 193
L LG + P +G +L ++ R + +
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLL-------------------AESLGWRWLFLIL 159
Query: 194 LVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCIFLYVGAEVAI 253
+L ++L L + A+ FL +
Sbjct: 160 AILGLLLALLLLFLL-------------------------RLLLLLALAFFLLSFGYYGL 194
Query: 254 GSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTL--CAFATT 311
+ + YL + L L AG +++ ++G +G + R + L
Sbjct: 195 LTYLPLYLQ--EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLA 252
Query: 312 ACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGGSGIICTTIS-- 369
A L++L+ + + +L+ +G FP + +LAS +A G + + T
Sbjct: 253 ALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSL 312
Query: 370 GGVIIPLGVGYLVDIASLRDAMFVPAVCYIIIAI 403
GG + PL G L+D + A ++ A+
Sbjct: 313 GGALGPLLAGLLLDTGGYGGVFLILAALALLAAL 346
>gnl|CDD|32405 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 49.1 bits (117), Expect = 2e-06
Identities = 76/416 (18%), Positives = 148/416 (35%), Gaps = 36/416 (8%)
Query: 6 ARNIQCTKIYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIP 65
RN+ + + + F + +L S L +++ F L+ Q L+ AI +P
Sbjct: 13 RRNLWLSTLAFDVGFM----VWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLP 68
Query: 66 AGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNP 125
G R+G K +L++ + C+ + + L+ +L + V + P
Sbjct: 69 YGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGM-P 127
Query: 126 FISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLAD-TMKDYQTD 184
S F + L I GNL ++A +
Sbjct: 128 NASFF-----------FPKEKQGLALGIAG-------AGNLGVAVAQLVAPLVAVAFGFL 169
Query: 185 TARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCIF 244
R ++ +Y+V I + WL M + + +N + ++ F
Sbjct: 170 AWRNVAGIYVVALAIAAVLAWL-GMNDVPEHRASVKPQLPAQLKAVFSNKDTWLLSLLYF 228
Query: 245 LYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEK- 303
G V + + YL L ++AG ++ + R +G W+ R +
Sbjct: 229 ATFGGFVGFSAYLPMYL--VTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV 286
Query: 304 TLCAFATTACSLVILSSYTTGFISGWSLI-------AVGLFNSIMFPTIFSLASASLEDQ 356
TL F A + +LS + TGF G S + A+ +F + ++F + +
Sbjct: 287 TLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE 346
Query: 357 ASGGSGIICTTIS-GGVIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYGIYCCYK 411
+GI+ GG +PL G +D+ F+ + + ++A+ + Y
Sbjct: 347 TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402
>gnl|CDD|37715 KOG2504, KOG2504, KOG2504, Monocarboxylate transporter
[Carbohydrate transport and metabolism].
Length = 509
Score = 48.8 bits (116), Expect = 3e-06
Identities = 65/439 (14%), Positives = 131/439 (29%), Gaps = 54/439 (12%)
Query: 25 GITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLL 84
G+ + +L +L + F + Q + ++ Y R+G + G L
Sbjct: 60 GLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL 119
Query: 85 IMSLGCILFTATIEITTFKVFL--------------------------------IALCIL 112
+ +LG +L + + + IA+
Sbjct: 120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGT 179
Query: 113 AIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTS 172
+G V+ L +S G L F ++ A +
Sbjct: 180 GVGTVVFPPLLKYLLSKYGWRGAL---LIFGGISLNVLVAGALLRPLSPPKKPNEEKDLR 236
Query: 173 MLADTMKDYQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILA 232
A +++ IS+ L + + + + + L +L
Sbjct: 237 NSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLK 296
Query: 233 NPRFTMGAVCIFLYVGAEVAIGSIMANYLMRH-DTLHLDGISAGQHTAIYWGSAMIGRFI 291
+P+F + + L ++ YL + +L L A +I S +IGR I
Sbjct: 297 DPKF----LLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRII 352
Query: 292 GTWILSRFSAEK----TLCAFATTACSLVILSSYTTGFISGWSLI---AVGLFNSIMFPT 344
+ + L L + + T + +S++ VG F+S+
Sbjct: 353 LGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVI 412
Query: 345 IFSLASASLEDQASGGSGIICTTISGGVII-PLGVGYLVDIASLRDAMFVPAVCYIIIA- 402
+ L ++ S G++ G ++ P G L DI D F +++
Sbjct: 413 LVDLVGL---EKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSA 469
Query: 403 --IYGIYCCYKENNFEQNT 419
+ + C K T
Sbjct: 470 VLLLILRECLKRREKSAKT 488
>gnl|CDD|37744 KOG2533, KOG2533, KOG2533, Permease of the major facilitator
superfamily [Carbohydrate transport and metabolism].
Length = 495
Score = 38.7 bits (90), Expect = 0.003
Identities = 68/427 (15%), Positives = 125/427 (29%), Gaps = 54/427 (12%)
Query: 13 KIYIFILFFL-------FGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIP 65
K+ +FIL FL + +S+ + + L+ L Q +++ +F+ Y P
Sbjct: 41 KLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFP 100
Query: 66 AGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNP 125
+G+ R+ KG+ ++ L L A + +F + +L + +
Sbjct: 101 SGLLGDRFPLSKGLSVSGILWGLFGFLTAA---VHSFPGLIALRFLLGLFESGGWPGVVA 157
Query: 126 FISLLGDPNTAVSRL----TFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKDY 181
+ + R+ A N G I + + G LA +
Sbjct: 158 ILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFI------- 210
Query: 182 QTDTARVISQMYLVLAIILFL----ATWLCWM------------QRNSFADHKRNHISFL 225
+ + LVL I++F W R S + N +
Sbjct: 211 ------IEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWK 264
Query: 226 KTLDILANPRFTMGAVCIFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSA 285
+ L +P ++C F + YL + A + Y
Sbjct: 265 GFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYL--KSNGGYSELQANLLSTPYDVGG 322
Query: 286 MIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYTTGFISGWSLIAVGLF------NS 339
++G + ++ R L + + + A G F
Sbjct: 323 IVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLI 382
Query: 340 IMFPTIFSLASASLEDQA---SGGSGIICTTISGGVIIPLGVGYLVDIASLRDAMFVPAV 396
S SA+L + S II T S G I L A+F V
Sbjct: 383 ATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV 442
Query: 397 CYIIIAI 403
+ +
Sbjct: 443 AACVGIV 449
>gnl|CDD|37743 KOG2532, KOG2532, KOG2532, Permease of the major facilitator
superfamily [Carbohydrate transport and metabolism].
Length = 466
Score = 32.6 bits (74), Expect = 0.21
Identities = 71/428 (16%), Positives = 131/428 (30%), Gaps = 59/428 (13%)
Query: 12 TKIYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQ 71
++ F + + + S + + + L+ + FF Y IP G
Sbjct: 39 VAMFNFTVICMQDNVISNIPSTNNTTAGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLAD 98
Query: 72 RYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCI-LAIGVVIIQVALNPFISLL 130
++G + LI +L +L I + + ++ L GV+ A+ ++
Sbjct: 99 KFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFP--AIGSILAKW 156
Query: 131 GDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKDYQTDTARVIS 190
PN + + + LGT I + +L +L P S
Sbjct: 157 APPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWP--------------------S 196
Query: 191 QMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLK------------------TLDILA 232
Y+ + L +S + H LK IL
Sbjct: 197 IFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILT 256
Query: 233 NPRFTMGAVCIFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAI----YWGSAMIG 288
+P + F + + + YL + L D G +A+ +
Sbjct: 257 SPPVWAIWISAFGGNWGFYLLLTYLPTYL--KEVLGFDVRETGFLSALPFLAMAIVKFVA 314
Query: 289 RFIGTWILSRFSAEKTLCAFATTACSLVILSSYT-TGFIS-GWSLIAVGLFNSIMFPTIF 346
+ + R +E T+ T F S L+AV L + + F
Sbjct: 315 GQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGF 374
Query: 347 SLA--SASLEDQASGGSGIICTTISG-----GVIIPLGVGYLV---DIASLRDAMFVPAV 396
+++ + +D A +G + I+ G I PL VG +V R + A
Sbjct: 375 NISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAG 434
Query: 397 CYIIIAIY 404
I+ I
Sbjct: 435 ILIVGNII 442
>gnl|CDD|34467 COG4858, COG4858, Uncharacterized membrane-bound protein conserved
in bacteria [Function unknown].
Length = 226
Score = 31.5 bits (71), Expect = 0.51
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 19 LFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAI----FFSCYFFFSIPAGMFIQRYG 74
L FL G + L+ I +N+ + +L + + Y++ QR G
Sbjct: 102 LLFL-GAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPG 160
Query: 75 YIKGICTGLLIMSLGCILFTATIEI-TTFKVFLIALCILAIGVVIIQV 121
K + +L M L + AT+ + T+ L + + IG VI+ +
Sbjct: 161 TWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILAL 208
>gnl|CDD|144493 pfam00916, Sulfate_transp, Sulfate transporter family. Mutations
in the diastrophic dysplasia protein (solute carrier
family 26 member 2) lead to several human diseases.
Length = 279
Score = 30.6 bits (70), Expect = 0.87
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 105 FLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTF--AQFFNSLGTAIFPYIGSVLM 162
L+A+ I+A + I +A +S++G+ + + + SL + P ++ +
Sbjct: 99 PLVAV-IVATVISYIFLADRYGVSIIGEIPSGLPPPSLPDVPLDWSLLLDLLPIALALAI 157
Query: 163 LGNLASPNTSMLADTMKDYQTD 184
+G L S T+ K Y+ D
Sbjct: 158 VGLLESILTAKSFAKKKGYKID 179
>gnl|CDD|35789 KOG0569, KOG0569, KOG0569, Permease of the major facilitator
superfamily [Carbohydrate transport and metabolism].
Length = 485
Score = 30.2 bits (68), Expect = 1.3
Identities = 20/116 (17%), Positives = 47/116 (40%)
Query: 50 LVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIAL 109
L+ +IFF S +G+ R+G + L+ L +L + +F++ ++
Sbjct: 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGR 123
Query: 110 CILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGN 165
I+ + + + +++ + N + T Q +G + +G +LG
Sbjct: 124 LIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGT 179
>gnl|CDD|35476 KOG0255, KOG0255, KOG0255, Synaptic vesicle transporter SVOP and
related transporters (major facilitator superfamily)
[General function prediction only].
Length = 521
Score = 29.8 bits (66), Expect = 1.4
Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 3/123 (2%)
Query: 39 NSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIE 98
N + L +++FF S+ G R+G + LL+ + IL
Sbjct: 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-- 168
Query: 99 ITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIG 158
+ +FLI + ++ + P LT FF G +
Sbjct: 169 -PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAA 227
Query: 159 SVL 161
+
Sbjct: 228 YIT 230
>gnl|CDD|32681 COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer
membrane].
Length = 250
Score = 29.5 bits (66), Expect = 1.6
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 119 IQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSM-LADT 177
++ ++ F + LG+P T V+ L + ++ I + L LG L + M L
Sbjct: 71 VRSGVSNFFNNLGEPATMVNNLLQGKPKKAMEHFNRFLINTTLGLGGLIDVASKMGLPKN 130
Query: 178 MKDYQTDTAR--VISQMYLVLAII 199
+D+ V + Y+VL I+
Sbjct: 131 PEDFGQTLGHYGVGNGPYIVLPIL 154
>gnl|CDD|32637 COG2807, CynX, Cyanate permease [Inorganic ion transport and
metabolism].
Length = 395
Score = 29.4 bits (66), Expect = 2.1
Identities = 74/400 (18%), Positives = 142/400 (35%), Gaps = 42/400 (10%)
Query: 16 IFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGY 75
+ I F L ITS+ L+ +++ L++ A L+ + + F+ A +R+G
Sbjct: 18 VLIAFNLRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGE 76
Query: 76 IKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNT 135
+ + LL+++ G ++ + +FL L + G+ +I V L I
Sbjct: 77 ERSLFLALLLIAAGILIRSL---GGLPLLFLGTL-LAGAGIAVINVLLPSLIK------- 125
Query: 136 AVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKDYQTDTARVISQMYLV 195
F +G Y S+ LA+ LA ++ + +
Sbjct: 126 -------RDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG-----FWAL 173
Query: 196 LAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCIFLYVGAEVAIGS 255
LA++ L WL R A +S + +P A + L++G + +
Sbjct: 174 LALLALLI-WLPQALREQAASIATKLVS---VRKVWRSPL----AWQVTLFMGLQSLLYY 225
Query: 256 IMANYLMRHDTLH-LDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACS 314
I+ +L L AG ++ + + + + R ++ L A
Sbjct: 226 IVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLA-LLLM 284
Query: 315 LVILSSYTTGFISGWSLIAV--GLFNSIMFPTIFSLASASLEDQASGGSGIICTTISGGV 372
LV L L A+ GL FP +L D A + + G
Sbjct: 285 LVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAA-LSGMAQGVGY 343
Query: 373 II----PLGVGYLVDIA-SLRDAMFVPAVCYIIIAIYGIY 407
++ P G+L D S + + A+ +++ I+G+
Sbjct: 344 LLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383
>gnl|CDD|35475 KOG0254, KOG0254, KOG0254, Predicted transporter (major facilitator
superfamily) [General function prediction only].
Length = 513
Score = 28.2 bits (62), Expect = 4.5
Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 10/158 (6%)
Query: 11 CTKIYIFILFFLFGGITSLNSILVPKLQNSFSLTYL-------QAMLVEAIFFSCYFFFS 63
+ L F + G S + LQ SL L + L+ +I S
Sbjct: 47 ALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGS 106
Query: 64 IPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVAL 123
+ AG R G K + +++ +G I+ ++ + +GV V
Sbjct: 107 LLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWY---QLIVGRILTGLGVGGASVLA 163
Query: 124 NPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVL 161
+IS + + + ++ Q F ++G + I
Sbjct: 164 PVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT 201
>gnl|CDD|33138 COG3329, COG3329, Predicted permease [General function prediction
only].
Length = 372
Score = 28.0 bits (62), Expect = 5.5
Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 18/122 (14%)
Query: 59 YFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKV---FLIALCILAIG 115
+F + F + I L + L I F +EI + L +A+G
Sbjct: 22 FFILGMLIAAFKSDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALG 81
Query: 116 VVIIQVALNPFISLLGDPNT-----------AVSRLTFA---QFFNSLGTAIFPYIGSVL 161
+I+ +A + L +T +VS +TFA F G A Y+ ++L
Sbjct: 82 FLIVFIAYF-LLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAML 140
Query: 162 ML 163
L
Sbjct: 141 AL 142
>gnl|CDD|32452 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 27.9 bits (62), Expect = 5.6
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 364 ICTTISGGVIIPL-GVGYLVDIASLRDAMFVPAVCYIIIAIYGIY 407
I G + + + + R A + P + II+A+ ++
Sbjct: 160 TSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF 204
>gnl|CDD|31004 COG0659, SUL1, Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism].
Length = 554
Score = 27.5 bits (61), Expect = 6.2
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Query: 81 TGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRL 140
L +++L +LF + LIAL + + V I + + + G + +
Sbjct: 179 LLLGLLTLAILLFLPRL-TPRIPSPLIALVLGTLIVWIFPLDSLRYGEIPGSLPSGLPHF 237
Query: 141 TFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKDYQTDTAR 187
SL A+ PY ++ +LG L S T++ D M + D+ R
Sbjct: 238 RLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGTKHDSNR 284
>gnl|CDD|33003 COG3190, FliO, Flagellar biogenesis protein [Cell motility and
secretion].
Length = 137
Score = 27.2 bits (60), Expect = 8.7
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 182 QTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLD 229
+ A++ + L+LA+ILFLA + + R S LK L
Sbjct: 21 ALELAQMFGSLILILALILFLAWLVKRLGRA----PLFKGSSGLKILA 64
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.331 0.142 0.437
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,090,849
Number of extensions: 287048
Number of successful extensions: 1304
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1272
Number of HSP's successfully gapped: 173
Length of query: 420
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 324
Effective length of database: 4,189,273
Effective search space: 1357324452
Effective search space used: 1357324452
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (26.5 bits)