RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780843|ref|YP_003065256.1| glucose/galactose transporter
[Candidatus Liberibacter asiaticus str. psy62]
(420 letters)
>gnl|CDD|162089 TIGR00885, fucP, L-fucose:H+ symporter permease. This family
describes the L-fucose permease in bacteria.
L-fucose(6-deoxy-L-galactose) is a monosaccharide found
in glycoproteins and cell wall polysaccharides. L-fucose
is used in bacteria through an inducible pathway
mediated by atleast four enzymes: a permease, isomerase,
kinase and an aldolase which are encoded by fucP, fucI,
fucK, fucA respectively. The fuc genes belong to a
regulon comprising of four linked operons: fucO, fucA,
fucPIK and fucR. The positive regulator is encoded by
fucR, whose protein responds to fuculose-1-phosphate,
which acts as an effector.
Length = 410
Score = 196 bits (500), Expect = 9e-51
Identities = 121/409 (29%), Positives = 203/409 (49%), Gaps = 23/409 (5%)
Query: 14 IYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRY 73
I LF L+G + + +VP+ Q +F+LT QA LV++ F+ YF +IPA +F+++
Sbjct: 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL 65
Query: 74 GYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDP 133
Y GI GL + +LG LF EI + +FL+ L IL G+ ++ A NP+I ++G
Sbjct: 66 SYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE 125
Query: 134 NTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKD-----YQTDTARV 188
+TA RL AQ FN G+ I + L+L NL + +L D + +
Sbjct: 126 STATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL-DKLSPEELSAIKHSDLAS 184
Query: 189 ISQMYLVLAIILFLATWLCWMQRNSFADHKRNH-ISFLKTLDILAN-PRFTMGAVCIFLY 246
+ Y+++ ++ L + + +H ISF +L LA + G + F Y
Sbjct: 185 VQTPYMIIGAVVLAVALLIMLTKMPALNHSDAKQISFSASLSRLARIRHYREGVIAQFFY 244
Query: 247 VGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAM----IGRFIGTWILSRFSAE 302
VG ++ + +++++ + G++AG A Y AM I RFIGTW++S +A
Sbjct: 245 VGVQIMCWT----FIIQYAVRLIPGMTAGF-AANYNIGAMVIFFISRFIGTWLISYLAAH 299
Query: 303 KTLCAFATTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGGSG 362
K L A+A +L + S + G + + L F S+MFPTI+ +A L G+
Sbjct: 300 KVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAA 359
Query: 363 IICTTISGGVIIPLGVGYLVDIASLRD------AMFVPAVCYIIIAIYG 405
+ I GG I+P G+++D+ + + +P +C+ +I IYG
Sbjct: 360 GLVMAIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVIFIYG 408
>gnl|CDD|182260 PRK10133, PRK10133, L-fucose transporter; Provisional.
Length = 438
Score = 193 bits (493), Expect = 5e-50
Identities = 143/403 (35%), Positives = 217/403 (53%), Gaps = 25/403 (6%)
Query: 19 LFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKG 78
LFFL+ +LN IL+P+ Q +F+LT QA L+++ F+ YF IPAG+ +++ Y G
Sbjct: 34 LFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG 93
Query: 79 ICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAVS 138
I TGL + +LG LF EI + +FL+ L I+A G+ ++ A NPF+++LG ++
Sbjct: 94 IITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHF 153
Query: 139 RLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKDYQTDTAR------VISQM 192
RL AQ FNS G I G L+L N+ + +L D M Q + V +
Sbjct: 154 RLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL-DKMTPEQLSAYKHSLVLSVQTPY 212
Query: 193 YLVLAIILFLA-----TWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCI-FLY 246
+++AI+L +A T +Q ++ +D K SF +L LA R AV F Y
Sbjct: 213 MIIVAIVLLVALLIMLTKFPALQSDNHSDAK--QGSFSASLSRLARIRHWRWAVLAQFCY 270
Query: 247 VGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAM----IGRFIGTWILSRFSAE 302
VGA+ A S YL+R+ + G++AG A Y M IGRF GTW++SRF+
Sbjct: 271 VGAQTACWS----YLIRYAVEEIPGMTAG-FAANYLTGTMVCFFIGRFTGTWLISRFAPH 325
Query: 303 KTLCAFATTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGGSG 362
K L A+A A +L ++S++ G + +L F SI +PTIFSL +L GS
Sbjct: 326 KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSS 385
Query: 363 IICTTISGGVIIPLGVGYLVDIA-SLRDAMFVPAVCYIIIAIY 404
I TI GG I+ +G++ D A ++ A +PA+C+ +I I+
Sbjct: 386 FIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428
>gnl|CDD|162278 TIGR01272, gluP, glucose/galactose transporter. Disruption of the
loci leads to the total loss of glucose or galactose
uptake in E.coli. Putative transporters in other
bacterial species were isolated by functional
complementation, which restored it functional activity.
Length = 310
Score = 191 bits (486), Expect = 3e-49
Identities = 119/308 (38%), Positives = 161/308 (52%), Gaps = 10/308 (3%)
Query: 101 TFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSV 160
+ +FL AL +LA G+ I+QVA NP++S+LG TA SRL Q FN LGT + P G
Sbjct: 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGS 68
Query: 161 LMLGNLASPNTSMLADTMKDYQTDTARVISQMYLVLAIIL-FLATWLCWMQRNSFADHKR 219
L+L SM T A + YL+LA L LA ++ +
Sbjct: 69 LILSGAGD--LSMQVATANAE----AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADV 122
Query: 220 NHISFLKTL---DILANPRFTMGAVCIFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQ 276
+S T +GA+ IF+YVGAEV+ GS + N+L L L A
Sbjct: 123 ARVSSGDTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAH 182
Query: 277 HTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYTTGFISGWSLIAVGL 336
TA WG AM+GRFIG+ ++ S + L A A L I ++ T G+++ W ++A+GL
Sbjct: 183 FTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMWFVLALGL 242
Query: 337 FNSIMFPTIFSLASASLEDQASGGSGIICTTISGGVIIPLGVGYLVDIASLRDAMFVPAV 396
FNSIMFPTIFSLA +L S GSGI+C I GG I+PL G L D ++ A +P
Sbjct: 243 FNSIMFPTIFSLALNALGRHTSQGSGILCLAIVGGAIVPLLQGSLADCLGIQLAFALPVP 302
Query: 397 CYIIIAIY 404
CY+ I Y
Sbjct: 303 CYLYILFY 310
>gnl|CDD|148990 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 345
Score = 67.8 bits (166), Expect = 5e-12
Identities = 62/364 (17%), Positives = 115/364 (31%), Gaps = 27/364 (7%)
Query: 16 IFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGY 75
F G + L L L ++ + L+ F Y AG R+G
Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGR 61
Query: 76 IKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNT 135
+ + GLL+ +LG +L ++ + L+ + +G + A I+ P
Sbjct: 62 RRVLLIGLLLFALGLLLLLFA---SSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118
Query: 136 AVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKDYQTDTARVISQMYLV 195
L LG A+ P +G +L R + +
Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLL-------------------ASLFGWRAAFLILAI 159
Query: 196 LAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCIFLYVGAEVAIGS 255
LA++ + L + + + L + + A +
Sbjct: 160 LALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPWKLLLRDPVLWLLLALLLFGFAFFA 219
Query: 256 IMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTL----CAFATT 311
+ + + L L + AG + IGR + + R + L
Sbjct: 220 LFTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILA 279
Query: 312 ACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASG-GSGIICTTISG 370
A L +LS + +L+ +G ++FP + +LAS + G SG+ T S
Sbjct: 280 ALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALASDLAPKEERGTASGLYNTAGSL 339
Query: 371 GVII 374
G +
Sbjct: 340 GGAL 343
Score = 42.8 bits (101), Expect = 2e-04
Identities = 30/142 (21%), Positives = 51/142 (35%)
Query: 14 IYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRY 73
+++ + LFG +P Q L+ L A L+ + + G R
Sbjct: 204 LWLLLALLLFGFAFFALFTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRL 263
Query: 74 GYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDP 133
G + + LL++ L + + L+AL +L G ++ ALN S L
Sbjct: 264 GRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALASDLAPK 323
Query: 134 NTAVSRLTFAQFFNSLGTAIFP 155
+ SLG A+ P
Sbjct: 324 EERGTASGLYNTAGSLGGALGP 345
>gnl|CDD|179633 PRK03699, PRK03699, putative transporter; Provisional.
Length = 394
Score = 41.4 bits (98), Expect = 4e-04
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 233 NPRFTMGAVCIFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIG 292
A+ LY+ A++ S + Y + + AG + +W + M+G +I
Sbjct: 204 GIGVLFLAIAALLYILAQLTFISWVPEYAQK--KFGMSLEDAGNLVSNFWMAYMVGMWIF 261
Query: 293 TWILSRFSAEKTLCAFATTACSLVILSSYTTGF-ISGWSLIAVGLFNSIMFPTIFSLAS 350
++I+ F ++ L A A L+ L T ++++ +G F+S ++ TI +L S
Sbjct: 262 SFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGS 320
>gnl|CDD|162094 TIGR00893, 2A0114, d-galactonate transporter.
Length = 399
Score = 34.2 bits (79), Expect = 0.066
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 278 TAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYTTGFISGWSLIA-VGL 336
+A WG +G+F G W+L RF A KTL F L ++ ++S + L +G
Sbjct: 36 SAFSWGYV-VGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGA 94
Query: 337 FNSIMFPTIFSLASA-----------SLEDQASGGSGIICTTISGGVIIPLG 377
+ FP I + ++ S+ + A G GII + G ++I
Sbjct: 95 AEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS 146
Score = 32.7 bits (75), Expect = 0.18
Identities = 16/65 (24%), Positives = 25/65 (38%)
Query: 28 SLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMS 87
+ S P LQ L+ Q V + F Y P G + R+G K + ++I
Sbjct: 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWG 70
Query: 88 LGCIL 92
+ L
Sbjct: 71 VFTGL 75
>gnl|CDD|129974 TIGR00896, CynX, cyanate transporter. This family of proteins is
involved in active transport of cyanate. The cyanate
transporter in E.Coli is used to transport cyanate into
the cell so it can be metabolized into ammonia and
bicarbonate. This process is used to overcome the
toxicity of environmental cyanate.
Length = 355
Score = 30.9 bits (70), Expect = 0.66
Identities = 22/104 (21%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 16 IFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGY 75
+ I L +TS+ +L P+++++ +++ A L+ A+ C+ + A +R+G
Sbjct: 6 VLIALNLRPALTSVGPLL-PQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGE 64
Query: 76 IKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVII 119
+ + GLL+++ G ++ +A F + +AI V++
Sbjct: 65 ERSVAAGLLLIAAGILIRSAPGTALLFAGTALIGVGIAIINVLL 108
>gnl|CDD|180893 PRK07225, PRK07225, DNA-directed RNA polymerase subunit B';
Validated.
Length = 605
Score = 29.2 bits (66), Expect = 1.9
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 10/41 (24%)
Query: 232 ANPRFTMGAVCIFLYVGAEVAIGSIMANYLMRHDT----LH 268
A+PR TMGA I + ++G ANY +R DT LH
Sbjct: 147 ASPRITMGAGMI------KQSLGLPAANYKLRPDTRGHLLH 181
>gnl|CDD|150295 pfam09581, Spore_III_AF, Stage III sporulation protein AF
(Spore_III_AF). This family represents the stage III
sporulation protein AF (Spore_III_AF) of the bacterial
endospore formation program, which exists in some but
not all members of the Firmicutes (formerly called
low-GC Gram-positives). The C-terminal region of these
proteins is poorly conserved.
Length = 185
Score = 29.2 bits (66), Expect = 2.3
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 112 LAIGVVIIQVALNPFISLLG-DPNTAVSRLTFAQFFN 147
L +G+++I + LNP + L G DP+ L+ +
Sbjct: 25 LVLGLLLIVIILNPVLKLFGKDPDLEFYILSESSLII 61
>gnl|CDD|181750 PRK09277, PRK09277, aconitate hydratase; Validated.
Length = 888
Score = 28.9 bits (66), Expect = 2.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 376 LGVGYLVDIASLRDAM 391
GV +VD+A++RDA+
Sbjct: 93 TGVPAVVDLAAMRDAI 108
>gnl|CDD|163424 TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2. This
protein is designated Asp2 because, along with SecY2,
SecA2, and other proteins it is part of the accessory
secretory protein system. The system is involved in the
export of serine-rich glycoproteins important for
virulence in a number of Gram-positive species,
including Streptococcus gordonii and Staphylococcus
aureus. This protein family is assigned to transport
rather than glycosylation function, but the specific
molecular role is unknown.
Length = 511
Score = 28.9 bits (65), Expect = 2.7
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 230 ILANPRFTMGAVCIFLYVGA---EVAIGSIMANYL----MRHDTLHLDGISAGQHTAIYW 282
++ +PR GA Y+G+ E I +++ L HD L L G+S G A+Y+
Sbjct: 319 LIGDPRLEGGA----FYLGSDEYEQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYY 374
Query: 283 GSAM 286
G+ +
Sbjct: 375 GAKL 378
>gnl|CDD|183266 PRK11663, PRK11663, regulatory protein UhpC; Provisional.
Length = 434
Score = 28.5 bits (64), Expect = 3.4
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 370 GGVIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYGIYCCYK 411
GG +IPL VG + R M + + I++ G++ C++
Sbjct: 159 GGALIPLVVGAIALHYGWRYGMMIAGIIAIVV---GLFLCWR 197
>gnl|CDD|180481 PRK06231, PRK06231, F0F1 ATP synthase subunit B; Validated.
Length = 205
Score = 28.3 bits (63), Expect = 3.7
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 194 LVLAIILFLATWLCWMQRNSFADHKRNHI 222
+ +I+L L +L W F + ++ I
Sbjct: 56 IAFSILLLLGIFLFWKPTQRFLNKRKELI 84
>gnl|CDD|148145 pfam06365, CD34_antigen, CD34/Podocalyxin family. This family
consists of several mammalian CD34 antigen proteins. The
CD34 antigen is a human leukocyte membrane protein
expressed specifically by lymphohematopoietic progenitor
cells. CD34 is a phosphoprotein. Activation of protein
kinase C (PKC) has been found to enhance CD34
phosphorylation. This family contains several eukaryotic
podocalyxin proteins. Podocalyxin is a major membrane
protein of the glomerular epithelium and is thought to
be involved in maintenance of the architecture of the
foot processes and filtration slits characteristic of
this unique epithelium by virtue of its high negative
charge. Podocalyxin functions as an anti-adhesin that
maintains an open filtration pathway between
neighbouring foot processes in the glomerular epithelium
by charge repulsion.
Length = 202
Score = 28.2 bits (63), Expect = 4.2
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 395 AVCYIIIAIYGIYCCY 410
+I AIY YCC+
Sbjct: 110 GFLLLIAAIYTGYCCH 125
>gnl|CDD|162084 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083).
Length = 481
Score = 28.1 bits (63), Expect = 4.5
Identities = 22/84 (26%), Positives = 36/84 (42%)
Query: 38 QNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATI 97
NS S + LV +IF F ++ AG R+G K + L+ +G IL
Sbjct: 63 ANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA 122
Query: 98 EITTFKVFLIALCILAIGVVIIQV 121
+ ++ ++ +L IGV I
Sbjct: 123 FALSVEMLIVGRVLLGIGVGIASA 146
Score = 27.7 bits (62), Expect = 6.6
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 315 LVILSSYTTGFISGWSLIAVGLFNSIMFPTIFS--LASASLEDQASGGSGII-CTTISGG 371
L+ L + G + G+ G+ + F SA+ + +S G++ + GG
Sbjct: 28 LLSLIAAIGGLMFGYD---TGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGG 84
Query: 372 VIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYGIYCCYKEN 413
I L G+L D + ++ + A+ ++I AI + +
Sbjct: 85 FIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALS 126
>gnl|CDD|150165 pfam09402, MSC, Man1-Src1p-C-terminal domain. MAN1 is an integral
protein of the inner nuclear membrane which binds to
chromatin associated proteins and plays a role in
nuclear organisation. The C terminal nucleoplasmic
region forms a DNA binding winged helix and binds to
Smad. This C-terminal tail is also found in S.
cerevisiae and is thought to consist of three conserved
helices followed by two downstream strands.
Length = 325
Score = 27.4 bits (61), Expect = 6.8
Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 86 MSLGCILFTATIE-ITTFKVFLIALCILAIGVVIIQ 120
+ L C + +++ L+ + IL + V ++
Sbjct: 192 LPLSCRFRRFVRLFLKRYRLLLLGIAILLLVVFYLR 227
>gnl|CDD|183810 PRK12881, acnA, aconitate hydratase; Provisional.
Length = 889
Score = 27.6 bits (62), Expect = 6.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 376 LGVGYLVDIASLRDAM 391
GV LVD+A++RDA
Sbjct: 92 TGVPALVDLAAMRDAA 107
>gnl|CDD|183224 PRK11598, PRK11598, putative metal dependent hydrolase;
Provisional.
Length = 545
Score = 27.3 bits (61), Expect = 7.6
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 54 IFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILA 113
+ + Y + K + L + SL +L A++ + F V I +L+
Sbjct: 17 LLAAFYI-------TLCLNIAFYKQVLQLLPLDSLHNVLVFASMPVVAFSVINIVFTLLS 69
Query: 114 I 114
Sbjct: 70 F 70
>gnl|CDD|162085 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 27.2 bits (61), Expect = 8.7
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 60 FFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVII 119
+S +G+ R+G + GL I L +F + + V +IA + G
Sbjct: 12 LIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---SNITVLIIARFLQGFGAAFA 68
Query: 120 QVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVL 161
VA I+ + P L +LG + P +G VL
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVL 110
>gnl|CDD|114690 pfam05982, DUF897, Domain of unknown function (DUF897). Family of
bacterial proteins with unknown function.
Length = 327
Score = 27.0 bits (60), Expect = 8.8
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 18/122 (14%)
Query: 59 YFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEI---TTFKVFLIALCILAIG 115
+F + A F + I L + L I +E+ V + +A+G
Sbjct: 5 FFALGMLAAAFKSDLEIPEAIYETLSLYLLLAIGLKGGMELRKSNLTAVVGPLVAGVALG 64
Query: 116 VVIIQVALNPFISLLGDPNT-----------AVSRLTFA---QFFNSLGTAIFPYIGSVL 161
+I +A + L +T +VS +TFA F G A Y+ ++L
Sbjct: 65 FLIPLIAY-FLLRKLTKLDTVDAAATAAHYGSVSAVTFAAAVTFLEESGIAYEGYMTAML 123
Query: 162 ML 163
L
Sbjct: 124 AL 125
>gnl|CDD|150740 pfam10100, DUF2338, Uncharacterized protein conserved in bacteria
(DUF2338). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 429
Score = 27.0 bits (60), Expect = 10.0
Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 224 FLKTLDILANPRFTMGAVCIFLYVGAEVAI-------GSIMANYLMRHDTLHLDGISAGQ 276
K L + P AV + L+ A + I + L R DTL L G Q
Sbjct: 1 MSKVLILGTGPVAIQLAVDLKLHGDARLGIAGRPSTRSKRLFEALARTDTLFLVGTQNEQ 60
Query: 277 HTAIYWGSAMIGRFI 291
H + G I FI
Sbjct: 61 HQQLE-GKCTIDCFI 74
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.331 0.142 0.437
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,770,118
Number of extensions: 446944
Number of successful extensions: 1480
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1457
Number of HSP's successfully gapped: 131
Length of query: 420
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 324
Effective length of database: 3,920,105
Effective search space: 1270114020
Effective search space used: 1270114020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.1 bits)