RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780843|ref|YP_003065256.1| glucose/galactose transporter [Candidatus Liberibacter asiaticus str. psy62] (420 letters) >gnl|CDD|162089 TIGR00885, fucP, L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. Length = 410 Score = 196 bits (500), Expect = 9e-51 Identities = 121/409 (29%), Positives = 203/409 (49%), Gaps = 23/409 (5%) Query: 14 IYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRY 73 I LF L+G + + +VP+ Q +F+LT QA LV++ F+ YF +IPA +F+++ Sbjct: 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL 65 Query: 74 GYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDP 133 Y GI GL + +LG LF EI + +FL+ L IL G+ ++ A NP+I ++G Sbjct: 66 SYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE 125 Query: 134 NTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKD-----YQTDTARV 188 +TA RL AQ FN G+ I + L+L NL + +L D + + Sbjct: 126 STATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL-DKLSPEELSAIKHSDLAS 184 Query: 189 ISQMYLVLAIILFLATWLCWMQRNSFADHKRNH-ISFLKTLDILAN-PRFTMGAVCIFLY 246 + Y+++ ++ L + + +H ISF +L LA + G + F Y Sbjct: 185 VQTPYMIIGAVVLAVALLIMLTKMPALNHSDAKQISFSASLSRLARIRHYREGVIAQFFY 244 Query: 247 VGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAM----IGRFIGTWILSRFSAE 302 VG ++ + +++++ + G++AG A Y AM I RFIGTW++S +A Sbjct: 245 VGVQIMCWT----FIIQYAVRLIPGMTAGF-AANYNIGAMVIFFISRFIGTWLISYLAAH 299 Query: 303 KTLCAFATTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGGSG 362 K L A+A +L + S + G + + L F S+MFPTI+ +A L G+ Sbjct: 300 KVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAA 359 Query: 363 IICTTISGGVIIPLGVGYLVDIASLRD------AMFVPAVCYIIIAIYG 405 + I GG I+P G+++D+ + + +P +C+ +I IYG Sbjct: 360 GLVMAIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVIFIYG 408 >gnl|CDD|182260 PRK10133, PRK10133, L-fucose transporter; Provisional. Length = 438 Score = 193 bits (493), Expect = 5e-50 Identities = 143/403 (35%), Positives = 217/403 (53%), Gaps = 25/403 (6%) Query: 19 LFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKG 78 LFFL+ +LN IL+P+ Q +F+LT QA L+++ F+ YF IPAG+ +++ Y G Sbjct: 34 LFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG 93 Query: 79 ICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAVS 138 I TGL + +LG LF EI + +FL+ L I+A G+ ++ A NPF+++LG ++ Sbjct: 94 IITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHF 153 Query: 139 RLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKDYQTDTAR------VISQM 192 RL AQ FNS G I G L+L N+ + +L D M Q + V + Sbjct: 154 RLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL-DKMTPEQLSAYKHSLVLSVQTPY 212 Query: 193 YLVLAIILFLA-----TWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCI-FLY 246 +++AI+L +A T +Q ++ +D K SF +L LA R AV F Y Sbjct: 213 MIIVAIVLLVALLIMLTKFPALQSDNHSDAK--QGSFSASLSRLARIRHWRWAVLAQFCY 270 Query: 247 VGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAM----IGRFIGTWILSRFSAE 302 VGA+ A S YL+R+ + G++AG A Y M IGRF GTW++SRF+ Sbjct: 271 VGAQTACWS----YLIRYAVEEIPGMTAG-FAANYLTGTMVCFFIGRFTGTWLISRFAPH 325 Query: 303 KTLCAFATTACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASGGSG 362 K L A+A A +L ++S++ G + +L F SI +PTIFSL +L GS Sbjct: 326 KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSS 385 Query: 363 IICTTISGGVIIPLGVGYLVDIA-SLRDAMFVPAVCYIIIAIY 404 I TI GG I+ +G++ D A ++ A +PA+C+ +I I+ Sbjct: 386 FIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 >gnl|CDD|162278 TIGR01272, gluP, glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. Length = 310 Score = 191 bits (486), Expect = 3e-49 Identities = 119/308 (38%), Positives = 161/308 (52%), Gaps = 10/308 (3%) Query: 101 TFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSV 160 + +FL AL +LA G+ I+QVA NP++S+LG TA SRL Q FN LGT + P G Sbjct: 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGS 68 Query: 161 LMLGNLASPNTSMLADTMKDYQTDTARVISQMYLVLAIIL-FLATWLCWMQRNSFADHKR 219 L+L SM T A + YL+LA L LA ++ + Sbjct: 69 LILSGAGD--LSMQVATANAE----AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADV 122 Query: 220 NHISFLKTL---DILANPRFTMGAVCIFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQ 276 +S T +GA+ IF+YVGAEV+ GS + N+L L L A Sbjct: 123 ARVSSGDTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAH 182 Query: 277 HTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYTTGFISGWSLIAVGL 336 TA WG AM+GRFIG+ ++ S + L A A L I ++ T G+++ W ++A+GL Sbjct: 183 FTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMWFVLALGL 242 Query: 337 FNSIMFPTIFSLASASLEDQASGGSGIICTTISGGVIIPLGVGYLVDIASLRDAMFVPAV 396 FNSIMFPTIFSLA +L S GSGI+C I GG I+PL G L D ++ A +P Sbjct: 243 FNSIMFPTIFSLALNALGRHTSQGSGILCLAIVGGAIVPLLQGSLADCLGIQLAFALPVP 302 Query: 397 CYIIIAIY 404 CY+ I Y Sbjct: 303 CYLYILFY 310 >gnl|CDD|148990 pfam07690, MFS_1, Major Facilitator Superfamily. Length = 345 Score = 67.8 bits (166), Expect = 5e-12 Identities = 62/364 (17%), Positives = 115/364 (31%), Gaps = 27/364 (7%) Query: 16 IFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGY 75 F G + L L L ++ + L+ F Y AG R+G Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGR 61 Query: 76 IKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNT 135 + + GLL+ +LG +L ++ + L+ + +G + A I+ P Sbjct: 62 RRVLLIGLLLFALGLLLLLFA---SSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118 Query: 136 AVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSMLADTMKDYQTDTARVISQMYLV 195 L LG A+ P +G +L R + + Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLL-------------------ASLFGWRAAFLILAI 159 Query: 196 LAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCIFLYVGAEVAIGS 255 LA++ + L + + + L + + A + Sbjct: 160 LALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPWKLLLRDPVLWLLLALLLFGFAFFA 219 Query: 256 IMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTL----CAFATT 311 + + + L L + AG + IGR + + R + L Sbjct: 220 LFTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILA 279 Query: 312 ACSLVILSSYTTGFISGWSLIAVGLFNSIMFPTIFSLASASLEDQASG-GSGIICTTISG 370 A L +LS + +L+ +G ++FP + +LAS + G SG+ T S Sbjct: 280 ALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALASDLAPKEERGTASGLYNTAGSL 339 Query: 371 GVII 374 G + Sbjct: 340 GGAL 343 Score = 42.8 bits (101), Expect = 2e-04 Identities = 30/142 (21%), Positives = 51/142 (35%) Query: 14 IYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRY 73 +++ + LFG +P Q L+ L A L+ + + G R Sbjct: 204 LWLLLALLLFGFAFFALFTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRL 263 Query: 74 GYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDP 133 G + + LL++ L + + L+AL +L G ++ ALN S L Sbjct: 264 GRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALASDLAPK 323 Query: 134 NTAVSRLTFAQFFNSLGTAIFP 155 + SLG A+ P Sbjct: 324 EERGTASGLYNTAGSLGGALGP 345 >gnl|CDD|179633 PRK03699, PRK03699, putative transporter; Provisional. Length = 394 Score = 41.4 bits (98), Expect = 4e-04 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 233 NPRFTMGAVCIFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIG 292 A+ LY+ A++ S + Y + + AG + +W + M+G +I Sbjct: 204 GIGVLFLAIAALLYILAQLTFISWVPEYAQK--KFGMSLEDAGNLVSNFWMAYMVGMWIF 261 Query: 293 TWILSRFSAEKTLCAFATTACSLVILSSYTTGF-ISGWSLIAVGLFNSIMFPTIFSLAS 350 ++I+ F ++ L A A L+ L T ++++ +G F+S ++ TI +L S Sbjct: 262 SFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGS 320 >gnl|CDD|162094 TIGR00893, 2A0114, d-galactonate transporter. Length = 399 Score = 34.2 bits (79), Expect = 0.066 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 13/112 (11%) Query: 278 TAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYTTGFISGWSLIA-VGL 336 +A WG +G+F G W+L RF A KTL F L ++ ++S + L +G Sbjct: 36 SAFSWGYV-VGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGA 94 Query: 337 FNSIMFPTIFSLASA-----------SLEDQASGGSGIICTTISGGVIIPLG 377 + FP I + ++ S+ + A G GII + G ++I Sbjct: 95 AEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS 146 Score = 32.7 bits (75), Expect = 0.18 Identities = 16/65 (24%), Positives = 25/65 (38%) Query: 28 SLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMS 87 + S P LQ L+ Q V + F Y P G + R+G K + ++I Sbjct: 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWG 70 Query: 88 LGCIL 92 + L Sbjct: 71 VFTGL 75 >gnl|CDD|129974 TIGR00896, CynX, cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. Length = 355 Score = 30.9 bits (70), Expect = 0.66 Identities = 22/104 (21%), Positives = 52/104 (50%), Gaps = 1/104 (0%) Query: 16 IFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGY 75 + I L +TS+ +L P+++++ +++ A L+ A+ C+ + A +R+G Sbjct: 6 VLIALNLRPALTSVGPLL-PQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGE 64 Query: 76 IKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVII 119 + + GLL+++ G ++ +A F + +AI V++ Sbjct: 65 ERSVAAGLLLIAAGILIRSAPGTALLFAGTALIGVGIAIINVLL 108 >gnl|CDD|180893 PRK07225, PRK07225, DNA-directed RNA polymerase subunit B'; Validated. Length = 605 Score = 29.2 bits (66), Expect = 1.9 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 10/41 (24%) Query: 232 ANPRFTMGAVCIFLYVGAEVAIGSIMANYLMRHDT----LH 268 A+PR TMGA I + ++G ANY +R DT LH Sbjct: 147 ASPRITMGAGMI------KQSLGLPAANYKLRPDTRGHLLH 181 >gnl|CDD|150295 pfam09581, Spore_III_AF, Stage III sporulation protein AF (Spore_III_AF). This family represents the stage III sporulation protein AF (Spore_III_AF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved. Length = 185 Score = 29.2 bits (66), Expect = 2.3 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Query: 112 LAIGVVIIQVALNPFISLLG-DPNTAVSRLTFAQFFN 147 L +G+++I + LNP + L G DP+ L+ + Sbjct: 25 LVLGLLLIVIILNPVLKLFGKDPDLEFYILSESSLII 61 >gnl|CDD|181750 PRK09277, PRK09277, aconitate hydratase; Validated. Length = 888 Score = 28.9 bits (66), Expect = 2.6 Identities = 8/16 (50%), Positives = 13/16 (81%) Query: 376 LGVGYLVDIASLRDAM 391 GV +VD+A++RDA+ Sbjct: 93 TGVPAVVDLAAMRDAI 108 >gnl|CDD|163424 TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. Length = 511 Score = 28.9 bits (65), Expect = 2.7 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 11/64 (17%) Query: 230 ILANPRFTMGAVCIFLYVGA---EVAIGSIMANYL----MRHDTLHLDGISAGQHTAIYW 282 ++ +PR GA Y+G+ E I +++ L HD L L G+S G A+Y+ Sbjct: 319 LIGDPRLEGGA----FYLGSDEYEQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYY 374 Query: 283 GSAM 286 G+ + Sbjct: 375 GAKL 378 >gnl|CDD|183266 PRK11663, PRK11663, regulatory protein UhpC; Provisional. Length = 434 Score = 28.5 bits (64), Expect = 3.4 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Query: 370 GGVIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYGIYCCYK 411 GG +IPL VG + R M + + I++ G++ C++ Sbjct: 159 GGALIPLVVGAIALHYGWRYGMMIAGIIAIVV---GLFLCWR 197 >gnl|CDD|180481 PRK06231, PRK06231, F0F1 ATP synthase subunit B; Validated. Length = 205 Score = 28.3 bits (63), Expect = 3.7 Identities = 7/29 (24%), Positives = 14/29 (48%) Query: 194 LVLAIILFLATWLCWMQRNSFADHKRNHI 222 + +I+L L +L W F + ++ I Sbjct: 56 IAFSILLLLGIFLFWKPTQRFLNKRKELI 84 >gnl|CDD|148145 pfam06365, CD34_antigen, CD34/Podocalyxin family. This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion. Length = 202 Score = 28.2 bits (63), Expect = 4.2 Identities = 7/16 (43%), Positives = 9/16 (56%) Query: 395 AVCYIIIAIYGIYCCY 410 +I AIY YCC+ Sbjct: 110 GFLLLIAAIYTGYCCH 125 >gnl|CDD|162084 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083). Length = 481 Score = 28.1 bits (63), Expect = 4.5 Identities = 22/84 (26%), Positives = 36/84 (42%) Query: 38 QNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATI 97 NS S + LV +IF F ++ AG R+G K + L+ +G IL Sbjct: 63 ANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA 122 Query: 98 EITTFKVFLIALCILAIGVVIIQV 121 + ++ ++ +L IGV I Sbjct: 123 FALSVEMLIVGRVLLGIGVGIASA 146 Score = 27.7 bits (62), Expect = 6.6 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Query: 315 LVILSSYTTGFISGWSLIAVGLFNSIMFPTIFS--LASASLEDQASGGSGII-CTTISGG 371 L+ L + G + G+ G+ + F SA+ + +S G++ + GG Sbjct: 28 LLSLIAAIGGLMFGYD---TGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGG 84 Query: 372 VIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYGIYCCYKEN 413 I L G+L D + ++ + A+ ++I AI + + Sbjct: 85 FIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALS 126 >gnl|CDD|150165 pfam09402, MSC, Man1-Src1p-C-terminal domain. MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C terminal nucleoplasmic region forms a DNA binding winged helix and binds to Smad. This C-terminal tail is also found in S. cerevisiae and is thought to consist of three conserved helices followed by two downstream strands. Length = 325 Score = 27.4 bits (61), Expect = 6.8 Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 1/36 (2%) Query: 86 MSLGCILFTATIE-ITTFKVFLIALCILAIGVVIIQ 120 + L C + +++ L+ + IL + V ++ Sbjct: 192 LPLSCRFRRFVRLFLKRYRLLLLGIAILLLVVFYLR 227 >gnl|CDD|183810 PRK12881, acnA, aconitate hydratase; Provisional. Length = 889 Score = 27.6 bits (62), Expect = 6.8 Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 376 LGVGYLVDIASLRDAM 391 GV LVD+A++RDA Sbjct: 92 TGVPALVDLAAMRDAA 107 >gnl|CDD|183224 PRK11598, PRK11598, putative metal dependent hydrolase; Provisional. Length = 545 Score = 27.3 bits (61), Expect = 7.6 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 7/61 (11%) Query: 54 IFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILA 113 + + Y + K + L + SL +L A++ + F V I +L+ Sbjct: 17 LLAAFYI-------TLCLNIAFYKQVLQLLPLDSLHNVLVFASMPVVAFSVINIVFTLLS 69 Query: 114 I 114 Sbjct: 70 F 70 >gnl|CDD|162085 TIGR00880, 2_A_01_02, Multidrug resistance protein. Length = 141 Score = 27.2 bits (61), Expect = 8.7 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 3/102 (2%) Query: 60 FFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEITTFKVFLIALCILAIGVVII 119 +S +G+ R+G + GL I L +F + + V +IA + G Sbjct: 12 LIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---SNITVLIIARFLQGFGAAFA 68 Query: 120 QVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVL 161 VA I+ + P L +LG + P +G VL Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVL 110 >gnl|CDD|114690 pfam05982, DUF897, Domain of unknown function (DUF897). Family of bacterial proteins with unknown function. Length = 327 Score = 27.0 bits (60), Expect = 8.8 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 18/122 (14%) Query: 59 YFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILFTATIEI---TTFKVFLIALCILAIG 115 +F + A F + I L + L I +E+ V + +A+G Sbjct: 5 FFALGMLAAAFKSDLEIPEAIYETLSLYLLLAIGLKGGMELRKSNLTAVVGPLVAGVALG 64 Query: 116 VVIIQVALNPFISLLGDPNT-----------AVSRLTFA---QFFNSLGTAIFPYIGSVL 161 +I +A + L +T +VS +TFA F G A Y+ ++L Sbjct: 65 FLIPLIAY-FLLRKLTKLDTVDAAATAAHYGSVSAVTFAAAVTFLEESGIAYEGYMTAML 123 Query: 162 ML 163 L Sbjct: 124 AL 125 >gnl|CDD|150740 pfam10100, DUF2338, Uncharacterized protein conserved in bacteria (DUF2338). Members of this family of hypothetical bacterial proteins have no known function. Length = 429 Score = 27.0 bits (60), Expect = 10.0 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 8/75 (10%) Query: 224 FLKTLDILANPRFTMGAVCIFLYVGAEVAI-------GSIMANYLMRHDTLHLDGISAGQ 276 K L + P AV + L+ A + I + L R DTL L G Q Sbjct: 1 MSKVLILGTGPVAIQLAVDLKLHGDARLGIAGRPSTRSKRLFEALARTDTLFLVGTQNEQ 60 Query: 277 HTAIYWGSAMIGRFI 291 H + G I FI Sbjct: 61 HQQLE-GKCTIDCFI 74 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.331 0.142 0.437 Gapped Lambda K H 0.267 0.0744 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,770,118 Number of extensions: 446944 Number of successful extensions: 1480 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1457 Number of HSP's successfully gapped: 131 Length of query: 420 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 324 Effective length of database: 3,920,105 Effective search space: 1270114020 Effective search space used: 1270114020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 58 (26.1 bits)