Query gi|254780844|ref|YP_003065257.1| hypothetical protein CLIBASIA_03695 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 113 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 39220 Date Sun May 29 23:27:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780844.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 TIGR01225 hutH histidine ammon 50.4 8.2 0.00021 19.8 1.4 30 57-86 399-433 (529) 2 pfam05399 EVI2A Ectropic viral 40.0 32 0.0008 16.5 3.0 34 9-51 129-162 (227) 3 pfam02510 SPAN Surface present 35.0 17 0.00043 18.1 1.0 53 58-110 172-224 (336) 4 pfam03753 HHV6-IE Human herpes 31.6 27 0.00069 16.9 1.6 50 6-61 243-297 (993) 5 KOG4801 consensus 31.0 18 0.00047 17.8 0.6 24 69-96 138-161 (321) 6 COG2986 HutH Histidine ammonia 30.7 26 0.00066 17.0 1.3 53 47-99 370-431 (498) 7 KOG3286 consensus 27.7 34 0.00088 16.3 1.6 50 20-75 13-62 (226) 8 pfam06716 DUF1201 Protein of u 18.6 76 0.0019 14.4 1.8 28 10-37 9-36 (54) 9 PRK11034 clpA ATP-dependent Cl 15.5 10 0.00026 19.3 -3.2 77 21-99 281-359 (758) 10 cd05798 SIS_TAL_PGI SIS_TAL_PG 15.2 1E+02 0.0026 13.7 1.9 29 48-79 9-37 (129) No 1 >TIGR01225 hutH histidine ammonia-lyase; InterPro: IPR005921 Histidine ammonia-lyase deaminates histidine to urocanic acid, the first step in histidine degradation. It is closely related to phenylalanine ammonia-lyase. ; GO: 0004397 histidine ammonia-lyase activity, 0006548 histidine catabolic process, 0005737 cytoplasm. Probab=50.40 E-value=8.2 Score=19.82 Aligned_cols=30 Identities=40% Similarity=0.543 Sum_probs=25.0 Q ss_pred HHHHHHHHHHCCCHHHCC-----CCCCCCCCHHHC Q ss_conf 888753454202001003-----488655512212 Q gi|254780844|r 57 CEQLVGATVHSEGKKRSH-----DVPSSSNQEDQR 86 (113) Q Consensus 57 ceqlvgatvhsegkkrsh-----dvpsssnqedqr 86 (113) --|..-|-.-||-|.=+| -.|+|.||||.- T Consensus 399 IaQyTaAALvSEnK~L~hPaSvDSiPtSAnQEDHV 433 (529) T TIGR01225 399 IAQYTAAALVSENKALAHPASVDSIPTSANQEDHV 433 (529) T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH T ss_conf 78999999875410137772445657664625533 No 2 >pfam05399 EVI2A Ectropic viral integration site 2A protein (EVI2A). This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours. Probab=40.03 E-value=32 Score=16.54 Aligned_cols=34 Identities=35% Similarity=0.686 Sum_probs=26.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC Q ss_conf 8999999999999999867655320587776312444321212 Q gi|254780844|r 9 NLLVCILSIQCLVLFCSEIFAFEKYKAPSYPTTVALNVLSPLA 51 (113) Q Consensus 9 nllvcilsiqclvlfcseifafekykapsypttvalnvlspla 51 (113) -.|+|..-|..|+|.|.-.|- -|.|.-|-+|-|. T Consensus 129 amLIClIiIAvLfLICtfLFL---------STVVlANKvSsLk 162 (227) T pfam05399 129 AMLICLIIIAALFLICTFLFL---------STVVLANKVSSLK 162 (227) T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH T ss_conf 689999999999999999999---------9999986888989 No 3 >pfam02510 SPAN Surface presentation of antigens protein. Surface presentation of antigens protein (SPAN), also know as invasion protein invJ, is a Salmonella secretory pathway protein involved in presentation of determinants required for mammalian host cell invasion. Probab=35.00 E-value=17 Score=18.08 Aligned_cols=53 Identities=30% Similarity=0.418 Sum_probs=43.6 Q ss_pred HHHHHHHHHCCCHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCHHH Q ss_conf 88753454202001003488655512212799742220046541678872110 Q gi|254780844|r 58 EQLVGATVHSEGKKRSHDVPSSSNQEDQRGSPSPKKTKNILELFPLPLPPTQY 110 (113) Q Consensus 58 eqlvgatvhsegkkrshdvpsssnqedqrgspspkktknilelfplplpptqy 110 (113) .-+.|..|..||.--..||..|.-.....+.+..|..|.|-|.-.|||.||.. T Consensus 172 k~iagegvrkeg~~la~dvapsrmaa~nt~k~ddk~hkkikeasqlplqptti 224 (336) T pfam02510 172 KAIAGEGIRKEGALLAGDVAPSRMAAANTGKADDKDHKKIKEAPQLPLQPTTI 224 (336) T ss_pred CEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHH T ss_conf 22405650346884543331456665126887504567664210188787407 No 4 >pfam03753 HHV6-IE Human herpesvirus 6 immediate early protein. The proteins in this family are poorly characterized, but an investigation has indicated that the immediate early protein is required the down-regulation of MHC class I expression in dendritic cells. Human herpesvirus 6 immediate early protein is also referred to as U90. Probab=31.61 E-value=27 Score=16.91 Aligned_cols=50 Identities=30% Similarity=0.632 Sum_probs=30.0 Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 88889999-----999999999998676553205877763124443212120010188875 Q gi|254780844|r 6 ACRNLLVC-----ILSIQCLVLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGCEQLV 61 (113) Q Consensus 6 acrnllvc-----ilsiqclvlfcseifafekykapsypttvalnvlsplaplgdgceqlv 61 (113) .|.||.-. +--.||.|+ ||.-|.+.+.|+-.-.-.+.+ +.-..|.|||+- T Consensus 243 NCkNLI~AAKNlg~avLQsIVi-CSnEFSwq~lk~~R~~FKiTm-----m~MIt~ACe~iE 297 (993) T pfam03753 243 NCKNLIEAAKNLGAAVLQSIVI-CSNEFSWQKLKANRKEFKITM-----MHMITDACEQIE 297 (993) T ss_pred CHHHHHHHHHHHHHHHHHHHEE-ECCCCCHHHHHHHHCCCEEEH-----HHHHHHHHHHHH T ss_conf 2788999988888988878202-244010877654320224529-----998888999998 No 5 >KOG4801 consensus Probab=31.00 E-value=18 Score=17.85 Aligned_cols=24 Identities=46% Similarity=0.826 Sum_probs=17.3 Q ss_pred CHHHCCCCCCCCCCHHHCCCCCCHHHHH Q ss_conf 0010034886555122127997422200 Q gi|254780844|r 69 GKKRSHDVPSSSNQEDQRGSPSPKKTKN 96 (113) Q Consensus 69 gkkrshdvpsssnqedqrgspspkktkn 96 (113) |-||... +.++|.||||-||+.|. T Consensus 138 giKrGrq----a~~~~hrGsp~pk~rKg 161 (321) T KOG4801 138 GIKRGRQ----ADSSDHRGSPHPKDRKG 161 (321) T ss_pred CCCCCCC----CCCCCCCCCCCCCCCCC T ss_conf 6444431----44222369988522457 No 6 >COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism] Probab=30.70 E-value=26 Score=17.03 Aligned_cols=53 Identities=36% Similarity=0.510 Sum_probs=32.8 Q ss_pred HCCCCCHHHH--HHHHHHHHHHCCCHHHCCC-----CCCCCCCHHHCC--CCCCHHHHHHHH Q ss_conf 2121200101--8887534542020010034-----886555122127--997422200465 Q gi|254780844|r 47 LSPLAPLGDG--CEQLVGATVHSEGKKRSHD-----VPSSSNQEDQRG--SPSPKKTKNILE 99 (113) Q Consensus 47 lsplaplgdg--ceqlvgatvhsegkkrshd-----vpsssnqedqrg--spspkktknile 99 (113) |+|-..+..| --|..-|..-||.|...|- .|+|.||||+-- ...-+|...|.| T Consensus 370 L~~~~G~nsGfMI~Q~taAAL~sENk~LA~PaSvDs~ptSanqEDhvSm~~~aa~k~~~iie 431 (498) T COG2986 370 LVPKPGLNSGFMIAQYTAAALVSENKVLAHPASVDSIPTSANQEDHVSMATHAARKLLEIIE 431 (498) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHH T ss_conf 25999866422899999999998877534886447765657644102002899999999999 No 7 >KOG3286 consensus Probab=27.75 E-value=34 Score=16.33 Aligned_cols=50 Identities=24% Similarity=0.328 Sum_probs=33.5 Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHCCC Q ss_conf 99999867655320587776312444321212001018887534542020010034 Q gi|254780844|r 20 LVLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGCEQLVGATVHSEGKKRSHD 75 (113) Q Consensus 20 lvlfcseifafekykapsypttvalnvlsplaplgdgceqlvgatvhsegkkrshd 75 (113) ..++|++.|..++ |.-+. .-|-.+|-.++-.-| ..+-++++++|.|.++- T Consensus 13 ~f~~~~Dvf~~~t---p~e~s--~e~h~~~~~~~~~~p-~~~~e~~~~~g~ke~gv 62 (226) T KOG3286 13 FFLSCSDVFRLFT---PPEHS--DENHQSPKDDFEAEP-DEIDETSFAQGQKESGV 62 (226) T ss_pred HHHHHHHHHHCCC---CCCCC--CCCCCCCCCCCCCCC-CCCCHHCCCCCCCCCCC T ss_conf 9999999987049---98544--223578776531256-53302104676444574 No 8 >pfam06716 DUF1201 Protein of unknown function (DUF1201). This family consists of several Sugar beet yellow virus (SBYV) putative membrane-binding proteins of around 54 residues in length. The function of this family is unknown. Probab=18.60 E-value=76 Score=14.40 Aligned_cols=28 Identities=36% Similarity=0.625 Sum_probs=19.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9999999999999998676553205877 Q gi|254780844|r 10 LLVCILSIQCLVLFCSEIFAFEKYKAPS 37 (113) Q Consensus 10 llvcilsiqclvlfcseifafekykaps 37 (113) ||...--.-||.|||--+|.+--||.-- T Consensus 9 lllafgfliclflfclvvfiwfvykqil 36 (54) T pfam06716 9 LLLAFGFLICLFLFCLVVFIWFVYKQIL 36 (54) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999 No 9 >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Probab=15.54 E-value=10 Score=19.27 Aligned_cols=77 Identities=27% Similarity=0.286 Sum_probs=28.8 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHC-CCCC-CCCCCHHHCCCCCCHHHHHHH Q ss_conf 99998676553205877763124443212120010188875345420200100-3488-655512212799742220046 Q gi|254780844|r 21 VLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGCEQLVGATVHSEGKKRS-HDVP-SSSNQEDQRGSPSPKKTKNIL 98 (113) Q Consensus 21 vlfcseifafekykapsypttvalnvlsplaplgdgceqlvgatvhsegkkrs-hdvp-sssnqedqrgspspkktknil 98 (113) +||..||...----+-+--..-|-|+|.|. |..|--|.+|||...|-+|-- .|-. +.--|.-.-.-||...|..|| T Consensus 281 ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~--LarG~l~~IgaTT~~EYrk~iekD~AL~RRFq~V~V~EPs~e~t~~IL 358 (758) T PRK11034 281 ILFIDEIHTIIGAGAASGGQVDAANLIKPL--LSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQII 358 (758) T ss_pred EEEEECHHHHCCCCCCCCCCCCHHHHHHHH--HHCCCCEEEEECCHHHHHHCCCCCHHHHHCCCEEECCCCCHHHHHHHH T ss_conf 999804344226887677764678874578--746972399943779987503214788842826531899989999999 Q ss_pred H Q ss_conf 5 Q gi|254780844|r 99 E 99 (113) Q Consensus 99 e 99 (113) . T Consensus 359 ~ 359 (758) T PRK11034 359 N 359 (758) T ss_pred H T ss_conf 9 No 10 >cd05798 SIS_TAL_PGI SIS_TAL_PGI: Transaldolase (TAL)/ Phosphoglucose isomerase (PGI). This group represents the SIS (Sugar ISomerase) PGI domain, of a multifunctional protein (TAL-PGI ) having both TAL and PGI activities. TAL_PGI contains an N-terminal TAL domain and a C-terminal PGI domain. TAL catalyzes the reversible conversion of sedoheptulose-7-phosphate (S7P) and glyceraldehyde-3-phosphate (G3P), to fructose-6-phosphate (F6P) and erythrose-4-phosphate (E4P). PGI catalyzes the reversible isomerization of F6P to glucose-6-phosphate (G6P). It has been suggested for Gluconobacter oxydans TAL_PGI that this enzyme generates E4P and G6P directly from S7P and G3P. G. oxydans TAL_PGI contributes to increased xylitol production from D-arabitol. As xylitol is an alternative natural sweetner to sucrose, the microbial conversion of D-arabitol to xylitol is of interest to food and pharmaceutical industries. Probab=15.21 E-value=1e+02 Score=13.66 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=22.1 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCC Q ss_conf 12120010188875345420200100348865 Q gi|254780844|r 48 SPLAPLGDGCEQLVGATVHSEGKKRSHDVPSS 79 (113) Q Consensus 48 splaplgdgceqlvgatvhsegkkrshdvpss 79 (113) ..|..+|+=++||++- |+||+-.--.|.. T Consensus 9 ~~L~~f~~W~~QL~AE---S~GK~gkGi~Pv~ 37 (129) T cd05798 9 PGIASLGAWLEQLIAE---STGKEGKGIIPVD 37 (129) T ss_pred CCCCCHHHHHHHHHHH---CCCCCCCCEEECC T ss_conf 8640077999999987---0576885314068 Done!