Query         gi|254780844|ref|YP_003065257.1| hypothetical protein CLIBASIA_03695 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 113
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Sun May 29 23:27:32 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780844.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01225 hutH histidine ammon  50.4     8.2 0.00021   19.8   1.4   30   57-86    399-433 (529)
  2 pfam05399 EVI2A Ectropic viral  40.0      32  0.0008   16.5   3.0   34    9-51    129-162 (227)
  3 pfam02510 SPAN Surface present  35.0      17 0.00043   18.1   1.0   53   58-110   172-224 (336)
  4 pfam03753 HHV6-IE Human herpes  31.6      27 0.00069   16.9   1.6   50    6-61    243-297 (993)
  5 KOG4801 consensus               31.0      18 0.00047   17.8   0.6   24   69-96    138-161 (321)
  6 COG2986 HutH Histidine ammonia  30.7      26 0.00066   17.0   1.3   53   47-99    370-431 (498)
  7 KOG3286 consensus               27.7      34 0.00088   16.3   1.6   50   20-75     13-62  (226)
  8 pfam06716 DUF1201 Protein of u  18.6      76  0.0019   14.4   1.8   28   10-37      9-36  (54)
  9 PRK11034 clpA ATP-dependent Cl  15.5      10 0.00026   19.3  -3.2   77   21-99    281-359 (758)
 10 cd05798 SIS_TAL_PGI SIS_TAL_PG  15.2   1E+02  0.0026   13.7   1.9   29   48-79      9-37  (129)

No 1  
>TIGR01225 hutH histidine ammonia-lyase; InterPro: IPR005921    Histidine ammonia-lyase deaminates histidine to urocanic acid, the first step in histidine degradation. It is closely related to phenylalanine ammonia-lyase. ; GO: 0004397 histidine ammonia-lyase activity, 0006548 histidine catabolic process, 0005737 cytoplasm.
Probab=50.40  E-value=8.2  Score=19.82  Aligned_cols=30  Identities=40%  Similarity=0.543  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHCCCHHHCC-----CCCCCCCCHHHC
Q ss_conf             888753454202001003-----488655512212
Q gi|254780844|r   57 CEQLVGATVHSEGKKRSH-----DVPSSSNQEDQR   86 (113)
Q Consensus        57 ceqlvgatvhsegkkrsh-----dvpsssnqedqr   86 (113)
                      --|..-|-.-||-|.=+|     -.|+|.||||.-
T Consensus       399 IaQyTaAALvSEnK~L~hPaSvDSiPtSAnQEDHV  433 (529)
T TIGR01225       399 IAQYTAAALVSENKALAHPASVDSIPTSANQEDHV  433 (529)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
T ss_conf             78999999875410137772445657664625533


No 2  
>pfam05399 EVI2A Ectropic viral integration site 2A protein (EVI2A). This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours.
Probab=40.03  E-value=32  Score=16.54  Aligned_cols=34  Identities=35%  Similarity=0.686  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
Q ss_conf             8999999999999999867655320587776312444321212
Q gi|254780844|r    9 NLLVCILSIQCLVLFCSEIFAFEKYKAPSYPTTVALNVLSPLA   51 (113)
Q Consensus         9 nllvcilsiqclvlfcseifafekykapsypttvalnvlspla   51 (113)
                      -.|+|..-|..|+|.|.-.|-         -|.|.-|-+|-|.
T Consensus       129 amLIClIiIAvLfLICtfLFL---------STVVlANKvSsLk  162 (227)
T pfam05399       129 AMLICLIIIAALFLICTFLFL---------STVVLANKVSSLK  162 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_conf             689999999999999999999---------9999986888989


No 3  
>pfam02510 SPAN Surface presentation of antigens protein. Surface presentation of antigens protein (SPAN), also know as invasion protein invJ, is a Salmonella secretory pathway protein involved in presentation of determinants required for mammalian host cell invasion.
Probab=35.00  E-value=17  Score=18.08  Aligned_cols=53  Identities=30%  Similarity=0.418  Sum_probs=43.6

Q ss_pred             HHHHHHHHHCCCHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCHHH
Q ss_conf             88753454202001003488655512212799742220046541678872110
Q gi|254780844|r   58 EQLVGATVHSEGKKRSHDVPSSSNQEDQRGSPSPKKTKNILELFPLPLPPTQY  110 (113)
Q Consensus        58 eqlvgatvhsegkkrshdvpsssnqedqrgspspkktknilelfplplpptqy  110 (113)
                      .-+.|..|..||.--..||..|.-.....+.+..|..|.|-|.-.|||.||..
T Consensus       172 k~iagegvrkeg~~la~dvapsrmaa~nt~k~ddk~hkkikeasqlplqptti  224 (336)
T pfam02510       172 KAIAGEGIRKEGALLAGDVAPSRMAAANTGKADDKDHKKIKEAPQLPLQPTTI  224 (336)
T ss_pred             CEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHH
T ss_conf             22405650346884543331456665126887504567664210188787407


No 4  
>pfam03753 HHV6-IE Human herpesvirus 6 immediate early protein. The proteins in this family are poorly characterized, but an investigation has indicated that the immediate early protein is required the down-regulation of MHC class I expression in dendritic cells. Human herpesvirus 6 immediate early protein is also referred to as U90.
Probab=31.61  E-value=27  Score=16.91  Aligned_cols=50  Identities=30%  Similarity=0.632  Sum_probs=30.0

Q ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             88889999-----999999999998676553205877763124443212120010188875
Q gi|254780844|r    6 ACRNLLVC-----ILSIQCLVLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGCEQLV   61 (113)
Q Consensus         6 acrnllvc-----ilsiqclvlfcseifafekykapsypttvalnvlsplaplgdgceqlv   61 (113)
                      .|.||.-.     +--.||.|+ ||.-|.+.+.|+-.-.-.+.+     +.-..|.|||+-
T Consensus       243 NCkNLI~AAKNlg~avLQsIVi-CSnEFSwq~lk~~R~~FKiTm-----m~MIt~ACe~iE  297 (993)
T pfam03753       243 NCKNLIEAAKNLGAAVLQSIVI-CSNEFSWQKLKANRKEFKITM-----MHMITDACEQIE  297 (993)
T ss_pred             CHHHHHHHHHHHHHHHHHHHEE-ECCCCCHHHHHHHHCCCEEEH-----HHHHHHHHHHHH
T ss_conf             2788999988888988878202-244010877654320224529-----998888999998


No 5  
>KOG4801 consensus
Probab=31.00  E-value=18  Score=17.85  Aligned_cols=24  Identities=46%  Similarity=0.826  Sum_probs=17.3

Q ss_pred             CHHHCCCCCCCCCCHHHCCCCCCHHHHH
Q ss_conf             0010034886555122127997422200
Q gi|254780844|r   69 GKKRSHDVPSSSNQEDQRGSPSPKKTKN   96 (113)
Q Consensus        69 gkkrshdvpsssnqedqrgspspkktkn   96 (113)
                      |-||...    +.++|.||||-||+.|.
T Consensus       138 giKrGrq----a~~~~hrGsp~pk~rKg  161 (321)
T KOG4801         138 GIKRGRQ----ADSSDHRGSPHPKDRKG  161 (321)
T ss_pred             CCCCCCC----CCCCCCCCCCCCCCCCC
T ss_conf             6444431----44222369988522457


No 6  
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism]
Probab=30.70  E-value=26  Score=17.03  Aligned_cols=53  Identities=36%  Similarity=0.510  Sum_probs=32.8

Q ss_pred             HCCCCCHHHH--HHHHHHHHHHCCCHHHCCC-----CCCCCCCHHHCC--CCCCHHHHHHHH
Q ss_conf             2121200101--8887534542020010034-----886555122127--997422200465
Q gi|254780844|r   47 LSPLAPLGDG--CEQLVGATVHSEGKKRSHD-----VPSSSNQEDQRG--SPSPKKTKNILE   99 (113)
Q Consensus        47 lsplaplgdg--ceqlvgatvhsegkkrshd-----vpsssnqedqrg--spspkktknile   99 (113)
                      |+|-..+..|  --|..-|..-||.|...|-     .|+|.||||+--  ...-+|...|.|
T Consensus       370 L~~~~G~nsGfMI~Q~taAAL~sENk~LA~PaSvDs~ptSanqEDhvSm~~~aa~k~~~iie  431 (498)
T COG2986         370 LVPKPGLNSGFMIAQYTAAALVSENKVLAHPASVDSIPTSANQEDHVSMATHAARKLLEIIE  431 (498)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHH
T ss_conf             25999866422899999999998877534886447765657644102002899999999999


No 7  
>KOG3286 consensus
Probab=27.75  E-value=34  Score=16.33  Aligned_cols=50  Identities=24%  Similarity=0.328  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHCCC
Q ss_conf             99999867655320587776312444321212001018887534542020010034
Q gi|254780844|r   20 LVLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGCEQLVGATVHSEGKKRSHD   75 (113)
Q Consensus        20 lvlfcseifafekykapsypttvalnvlsplaplgdgceqlvgatvhsegkkrshd   75 (113)
                      ..++|++.|..++   |.-+.  .-|-.+|-.++-.-| ..+-++++++|.|.++-
T Consensus        13 ~f~~~~Dvf~~~t---p~e~s--~e~h~~~~~~~~~~p-~~~~e~~~~~g~ke~gv   62 (226)
T KOG3286          13 FFLSCSDVFRLFT---PPEHS--DENHQSPKDDFEAEP-DEIDETSFAQGQKESGV   62 (226)
T ss_pred             HHHHHHHHHHCCC---CCCCC--CCCCCCCCCCCCCCC-CCCCHHCCCCCCCCCCC
T ss_conf             9999999987049---98544--223578776531256-53302104676444574


No 8  
>pfam06716 DUF1201 Protein of unknown function (DUF1201). This family consists of several Sugar beet yellow virus (SBYV) putative membrane-binding proteins of around 54 residues in length. The function of this family is unknown.
Probab=18.60  E-value=76  Score=14.40  Aligned_cols=28  Identities=36%  Similarity=0.625  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999999999998676553205877
Q gi|254780844|r   10 LLVCILSIQCLVLFCSEIFAFEKYKAPS   37 (113)
Q Consensus        10 llvcilsiqclvlfcseifafekykaps   37 (113)
                      ||...--.-||.|||--+|.+--||.--
T Consensus         9 lllafgfliclflfclvvfiwfvykqil   36 (54)
T pfam06716         9 LLLAFGFLICLFLFCLVVFIWFVYKQIL   36 (54)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999


No 9  
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=15.54  E-value=10  Score=19.27  Aligned_cols=77  Identities=27%  Similarity=0.286  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHC-CCCC-CCCCCHHHCCCCCCHHHHHHH
Q ss_conf             99998676553205877763124443212120010188875345420200100-3488-655512212799742220046
Q gi|254780844|r   21 VLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGCEQLVGATVHSEGKKRS-HDVP-SSSNQEDQRGSPSPKKTKNIL   98 (113)
Q Consensus        21 vlfcseifafekykapsypttvalnvlsplaplgdgceqlvgatvhsegkkrs-hdvp-sssnqedqrgspspkktknil   98 (113)
                      +||..||...----+-+--..-|-|+|.|.  |..|--|.+|||...|-+|-- .|-. +.--|.-.-.-||...|..||
T Consensus       281 ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~--LarG~l~~IgaTT~~EYrk~iekD~AL~RRFq~V~V~EPs~e~t~~IL  358 (758)
T PRK11034        281 ILFIDEIHTIIGAGAASGGQVDAANLIKPL--LSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQII  358 (758)
T ss_pred             EEEEECHHHHCCCCCCCCCCCCHHHHHHHH--HHCCCCEEEEECCHHHHHHCCCCCHHHHHCCCEEECCCCCHHHHHHHH
T ss_conf             999804344226887677764678874578--746972399943779987503214788842826531899989999999


Q ss_pred             H
Q ss_conf             5
Q gi|254780844|r   99 E   99 (113)
Q Consensus        99 e   99 (113)
                      .
T Consensus       359 ~  359 (758)
T PRK11034        359 N  359 (758)
T ss_pred             H
T ss_conf             9


No 10 
>cd05798 SIS_TAL_PGI SIS_TAL_PGI: Transaldolase (TAL)/ Phosphoglucose isomerase (PGI). This group represents the SIS (Sugar ISomerase) PGI domain, of a multifunctional protein (TAL-PGI ) having both TAL and PGI activities. TAL_PGI contains an N-terminal TAL domain and a C-terminal PGI domain. TAL catalyzes the reversible conversion of sedoheptulose-7-phosphate (S7P) and glyceraldehyde-3-phosphate (G3P), to fructose-6-phosphate (F6P) and erythrose-4-phosphate (E4P). PGI catalyzes the reversible isomerization of F6P to glucose-6-phosphate (G6P). It has been suggested for Gluconobacter oxydans TAL_PGI that this enzyme generates E4P and G6P directly from S7P and G3P. G. oxydans TAL_PGI contributes to increased xylitol production from D-arabitol. As xylitol is an alternative natural sweetner to sucrose, the microbial conversion of D-arabitol to xylitol is of interest to food and pharmaceutical industries.
Probab=15.21  E-value=1e+02  Score=13.66  Aligned_cols=29  Identities=34%  Similarity=0.464  Sum_probs=22.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCC
Q ss_conf             12120010188875345420200100348865
Q gi|254780844|r   48 SPLAPLGDGCEQLVGATVHSEGKKRSHDVPSS   79 (113)
Q Consensus        48 splaplgdgceqlvgatvhsegkkrshdvpss   79 (113)
                      ..|..+|+=++||++-   |+||+-.--.|..
T Consensus         9 ~~L~~f~~W~~QL~AE---S~GK~gkGi~Pv~   37 (129)
T cd05798           9 PGIASLGAWLEQLIAE---STGKEGKGIIPVD   37 (129)
T ss_pred             CCCCCHHHHHHHHHHH---CCCCCCCCEEECC
T ss_conf             8640077999999987---0576885314068


Done!