Query gi|254780844|ref|YP_003065257.1| hypothetical protein CLIBASIA_03695 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 113
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:06:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780844.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ej5a_ a.68.1.1 (A:) Wiscott- 48.0 4.1 0.0003 19.0 1.8 32 55-87 76-107 (107)
2 d1wkva1 c.79.1.1 (A:2-383) O-a 6.1 75 0.0055 11.9 0.7 15 87-101 76-90 (382)
3 d1x6oa1 b.34.5.2 (A:19-86) Euk 5.9 42 0.003 13.3 -0.7 23 60-83 43-65 (68)
4 d1yf2a1 d.287.1.2 (A:1-220) Bi 5.1 93 0.0068 11.3 0.8 24 85-108 145-168 (220)
5 d1tzpa_ d.65.1.3 (A:) D-alanyl 4.7 88 0.0064 11.5 0.3 13 49-61 208-221 (255)
6 d1h05a_ c.23.13.1 (A:) Type II 3.9 1.1E+02 0.0079 11.0 0.2 28 24-51 100-127 (144)
7 d2jeka1 a.255.1.1 (A:6-145) Hy 3.8 1E+02 0.0074 11.1 0.1 21 83-103 89-109 (140)
8 d2oc5a1 a.25.1.6 (A:20-241) Hy 3.7 1.2E+02 0.0088 10.7 2.5 26 10-35 96-121 (222)
9 d1pp0a_ d.103.1.1 (A:) Volvato 3.3 80 0.0059 11.7 -0.8 30 49-78 12-41 (194)
10 d1gtza_ c.23.13.1 (A:) Type II 3.3 1.3E+02 0.0096 10.5 0.2 29 24-52 106-134 (149)
No 1
>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.00 E-value=4.1 Score=18.95 Aligned_cols=32 Identities=47% Similarity=0.593 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHCC
Q ss_conf 018887534542020010034886555122127
Q gi|254780844|r 55 DGCEQLVGATVHSEGKKRSHDVPSSSNQEDQRG 87 (113)
Q Consensus 55 dgceqlvgatvhsegkkrshdvpsssnqedqrg 87 (113)
+.-+-++|++.+--- ||+.-.|||-|-|||.|
T Consensus 76 ~ss~Gli~s~~~~~q-~R~~~~~~~~~~~~~~~ 107 (107)
T d1ej5a_ 76 QSSEGLVGALMHVMQ-KRSRAIHSSDEGEDQAG 107 (107)
T ss_dssp CTTTTHHHHHHHHGG-GGSSCCCCCCSSCCSCC
T ss_pred CCCHHHHHHHHHHHH-HHHHCCCCCCCCCCCCC
T ss_conf 553267788999999-87512567766553469
No 2
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=6.10 E-value=75 Score=11.85 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=9.8
Q ss_pred CCCCCHHHHHHHHHC
Q ss_conf 799742220046541
Q gi|254780844|r 87 GSPSPKKTKNILELF 101 (113)
Q Consensus 87 gspspkktknilelf 101 (113)
++|++.--.|.||+|
T Consensus 76 ~~~~~~~~~~~l~~~ 90 (382)
T d1wkva1 76 SVPGEMVFPSPLDFF 90 (382)
T ss_dssp CSCTTCEESSHHHHH
T ss_pred CCCCCEEECCHHHHH
T ss_conf 898546757989985
No 3
>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}
Probab=5.88 E-value=42 Score=13.29 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=15.4
Q ss_pred HHHHHHHCCCHHHCCCCCCCCCCH
Q ss_conf 753454202001003488655512
Q gi|254780844|r 60 LVGATVHSEGKKRSHDVPSSSNQE 83 (113)
Q Consensus 60 lvgatvhsegkkrshdvpsssnqe 83 (113)
++|-.+. .|||+++-.|++.|-+
T Consensus 43 i~~idIF-tgkK~~~v~P~~~~v~ 65 (68)
T d1x6oa1 43 IVATDIF-TGNRLEDQAPSTHNVE 65 (68)
T ss_dssp EEEEETT-TCCEEEEEEETTSEEE
T ss_pred EEEEECC-CCCEEEEECCCCCEEE
T ss_conf 9999710-6978898805773253
No 4
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=5.07 E-value=93 Score=11.33 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=18.6
Q ss_pred HCCCCCCHHHHHHHHHCCCCCCCH
Q ss_conf 127997422200465416788721
Q gi|254780844|r 85 QRGSPSPKKTKNILELFPLPLPPT 108 (113)
Q Consensus 85 qrgspspkktknilelfplplppt 108 (113)
.+|+..|.-+++.+.-+++|+||-
T Consensus 145 ~~g~~~~~i~~~~l~~~~i~iPp~ 168 (220)
T d1yf2a1 145 GMQTTQKNLNAQIVKSFKIPLPPL 168 (220)
T ss_dssp SSSSSCCCCCHHHHHTCEECCCCH
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCH
T ss_conf 245551214565543246522458
No 5
>d1tzpa_ d.65.1.3 (A:) D-alanyl-D-alanine-endopeptidase MepA {Escherichia coli [TaxId: 562]}
Probab=4.74 E-value=88 Score=11.47 Aligned_cols=13 Identities=62% Similarity=1.306 Sum_probs=7.6
Q ss_pred CCCCHHHHH-HHHH
Q ss_conf 212001018-8875
Q gi|254780844|r 49 PLAPLGDGC-EQLV 61 (113)
Q Consensus 49 plaplgdgc-eqlv 61 (113)
+..|-|||| +.|-
T Consensus 208 ~~~p~gdGC~~~l~ 221 (255)
T d1tzpa_ 208 PLPPSGDGCGAELQ 221 (255)
T ss_dssp CCCCSSCCTTHHHH
T ss_pred CCCCCCCCCHHHHH
T ss_conf 99788897068899
No 6
>d1h05a_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.86 E-value=1.1e+02 Score=10.97 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=17.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCC
Q ss_conf 9867655320587776312444321212
Q gi|254780844|r 24 CSEIFAFEKYKAPSYPTTVALNVLSPLA 51 (113)
Q Consensus 24 cseifafekykapsypttvalnvlspla 51 (113)
-|.|++.|.+...|+-..++..+.+-+.
T Consensus 100 lSNi~~RE~fR~~S~is~~~~g~I~G~G 127 (144)
T d1h05a_ 100 ISNVHAREEFRRHSYLSPIATGVIVGLG 127 (144)
T ss_dssp SSCGGGSCGGGGCCSSGGGSSEEEESST
T ss_pred ECCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 5374345555544323642439993498
No 7
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.82 E-value=1e+02 Score=11.13 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=11.8
Q ss_pred HHHCCCCCCHHHHHHHHHCCC
Q ss_conf 221279974222004654167
Q gi|254780844|r 83 EDQRGSPSPKKTKNILELFPL 103 (113)
Q Consensus 83 edqrgspspkktknilelfpl 103 (113)
++--|+|.-.|-+.-+.||-.
T Consensus 89 ~~IfG~~D~lKlrSsmTLF~~ 109 (140)
T d2jeka1 89 EEIFGPPDDLKLCSSMTLFAR 109 (140)
T ss_dssp HHHSCTTHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
T ss_conf 997798468899858999987
No 8
>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]}
Probab=3.65 E-value=1.2e+02 Score=10.69 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999986765532058
Q gi|254780844|r 10 LLVCILSIQCLVLFCSEIFAFEKYKA 35 (113)
Q Consensus 10 llvcilsiqclvlfcseifafekyka 35 (113)
-+|.-|-||.|..-|-.|-|+.-|-.
T Consensus 96 k~~tCLlIQaliIE~FAIaAY~iYip 121 (222)
T d2oc5a1 96 KTPTCLLIQALLIEAFAISAYHTYIP 121 (222)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHHHGG
T ss_pred CEEEHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 93214989999999999998773110
No 9
>d1pp0a_ d.103.1.1 (A:) Volvatoxin A2 {Volvariella volvacea, different isoforms [TaxId: 36659]}
Probab=3.34 E-value=80 Score=11.69 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHCCCCCC
Q ss_conf 212001018887534542020010034886
Q gi|254780844|r 49 PLAPLGDGCEQLVGATVHSEGKKRSHDVPS 78 (113)
Q Consensus 49 plaplgdgceqlvgatvhsegkkrshdvps 78 (113)
.|+|-+--.-+|+|+-+.+|-.+|+-|-|+
T Consensus 12 ~l~~~~~Qv~kl~~~~~~le~d~~~fdwp~ 41 (194)
T d1pp0a_ 12 DLIPSSIQVLKFSGKYLKLEQDKAYFDWPG 41 (194)
T ss_dssp GGHHHHHHHHHHHHTTEEEETTEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 577879999999756610126765466721
No 10
>d1gtza_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.28 E-value=1.3e+02 Score=10.48 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=18.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCCC
Q ss_conf 98676553205877763124443212120
Q gi|254780844|r 24 CSEIFAFEKYKAPSYPTTVALNVLSPLAP 52 (113)
Q Consensus 24 cseifafekykapsypttvalnvlsplap 52 (113)
-|.|++.|.+..-||-..++..+.+-+..
T Consensus 106 lSNi~~RE~fR~~S~is~~~~g~I~G~G~ 134 (149)
T d1gtza_ 106 ISNIHQREPFRHHSYVSQRADGVVAGCGV 134 (149)
T ss_dssp SSCGGGSCGGGSCCSGGGTCSEEEESSTT
T ss_pred ECCCCCCCCCCCCCCCCCCCEEEEECCCH
T ss_conf 44732235435411126535389954886
Done!