RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780844|ref|YP_003065257.1| hypothetical protein
CLIBASIA_03695 [Candidatus Liberibacter asiaticus str. psy62]
         (113 letters)



>gnl|CDD|185234 PRK15334, PRK15334, antigen presentation protein SpaN; Provisional.
          Length = 336

 Score = 28.6 bits (63), Expect = 0.35
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 60  LVGATVHSEGKKRSHDVPSSSNQEDQRGSPSPKKTKNILELFPLPLPPT 108
           + G  V  EG   + DV  +       G P  K  K + ++  LPL PT
Sbjct: 174 IAGEGVRKEGAPLARDVAPARMAAANTGKPDDKDHKKVKDVSQLPLQPT 222


>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter. 
          Length = 429

 Score = 27.4 bits (61), Expect = 0.95
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 4   RSACRNLLVCILSIQCLVLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGCEQLVGA 63
            S   N ++ +L +  L+LF         + + +Y         +P  P+G G      A
Sbjct: 154 ESGKVNDILVVLKVAALLLFA--ALGAIHFASNNY---------TPFMPMGFGGVGAATA 202

Query: 64  TV 65
            V
Sbjct: 203 LV 204


>gnl|CDD|181802 PRK09367, PRK09367, histidine ammonia-lyase; Provisional.
          Length = 500

 Score = 26.6 bits (60), Expect = 1.4
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 5/23 (21%)

Query: 67  SEGKKRSH----D-VPSSSNQED 84
           SE K  +H    D +P+S+NQED
Sbjct: 392 SENKTLAHPASVDSIPTSANQED 414


>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR).  This
           family consists of several bovine specific leukaemia
           virus receptors which are thought to function as
           transmembrane proteins, although their exact function is
           unknown.
          Length = 561

 Score = 25.8 bits (56), Expect = 2.3
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 51  APLGDGCEQLVGATVHSEGKKRSHDVPSSSNQEDQRGSPSPKKTK 95
           A + +  E  +  TV         D P  +  E+ + SP  KK K
Sbjct: 240 ASVAEADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKK 284


>gnl|CDD|162347 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like
           enzyme.  This model represents a family of
           pyridoxal-phosphate dependent enzyme (pfam00291) closely
           related to the beta subunit of tryptophan synthase
           (TIGR00263). However, the only case in which a member of
           this family replaces a member of TIGR00263 is in
           Sulfolobus species which contain two sequences which hit
           this model, one of which is proximal to the alpha
           subunit. In every other case so far, either the species
           appears not to make tryptophan (there is no trp synthase
           alpha subunit), or a trp synthase beta subunit matching
           TIGR00263 is also found.
          Length = 419

 Score = 25.1 bits (55), Expect = 4.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)

Query: 91  PKKTKNILELFPLPLPP 107
           PK   NIL   P PLPP
Sbjct: 2   PKHWYNILPDLPEPLPP 18


>gnl|CDD|130292 TIGR01225, hutH, histidine ammonia-lyase.  This enzyme deaminates
           histidine to urocanic acid, the first step in histidine
           degradation. It is closely related to phenylalanine
           ammonia-lyase.
          Length = 506

 Score = 25.0 bits (55), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 5/31 (16%)

Query: 59  QLVGATVHSEGKKRSH-----DVPSSSNQED 84
           Q   A + SE K  SH      +P+S+NQED
Sbjct: 382 QYTAAALVSENKALSHPASVDSIPTSANQED 412


>gnl|CDD|151665 pfam11223, DUF3020, Protein of unknown function (DUF3020).  This
          family of fungal proteins is conserved towards the
          C-terminus of HMG domains. The function is not known.
          Length = 49

 Score = 24.9 bits (54), Expect = 4.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 68 EGKKRSHDVPSSSNQEDQRGSPSPKKTK 95
          E KK+  +  S  N+++   S   KK K
Sbjct: 3  ERKKKWREANSERNKDNDLRSRVKKKAK 30


>gnl|CDD|163241 TIGR03377, glycerol3P_GlpA, glycerol-3-phosphate dehydrogenase,
           anaerobic, A subunit.  Members of this protein family
           are the A subunit, product of the glpA gene, of a
           three-subunit, membrane-anchored, FAD-dependent
           anaerobic glycerol-3-phosphate dehydrogenase.
          Length = 516

 Score = 24.6 bits (54), Expect = 6.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 69  GKKRSHDVPSSSNQEDQRGSPSPKKTKNILELFPLPLP 106
            KK  +D P  +  E   GS  P   K + +L  LP P
Sbjct: 345 CKKLGNDRPCRTADEPLPGSEDPTAVKTLKKLISLPSP 382


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0722    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,757,562
Number of extensions: 91838
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 11
Length of query: 113
Length of database: 5,994,473
Length adjustment: 78
Effective length of query: 35
Effective length of database: 4,309,049
Effective search space: 150816715
Effective search space used: 150816715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)