BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780844|ref|YP_003065257.1| hypothetical protein
CLIBASIA_03695 [Candidatus Liberibacter asiaticus str. psy62]
         (113 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780844|ref|YP_003065257.1| hypothetical protein CLIBASIA_03695 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 113

 Score =  231 bits (590), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MFLRSACRNLLVCILSIQCLVLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGCEQL 60
           MFLRSACRNLLVCILSIQCLVLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGCEQL
Sbjct: 1   MFLRSACRNLLVCILSIQCLVLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGCEQL 60

Query: 61  VGATVHSEGKKRSHDVPSSSNQEDQRGSPSPKKTKNILELFPLPLPPTQYYSF 113
           VGATVHSEGKKRSHDVPSSSNQEDQRGSPSPKKTKNILELFPLPLPPTQYYSF
Sbjct: 61  VGATVHSEGKKRSHDVPSSSNQEDQRGSPSPKKTKNILELFPLPLPPTQYYSF 113


>gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 384

 Score = 23.5 bits (49), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 42  VALNVLSPLAPLGD--GCEQLVGATVHSEGKKRSHDV 76
           + L VL   + LGD  GCE + G  + S G+K S+ V
Sbjct: 147 ILLQVLLARSLLGDFPGCEDIEGMVIPSVGRKISNIV 183


>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 472

 Score = 23.1 bits (48), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 31  EKYKAPSYPTTVALNVLSPLAPLGDG 56
           E Y A       A++VLS ++P G+G
Sbjct: 344 ESYNANPASMKAAISVLSQISPHGEG 369


>gi|254780763|ref|YP_003065176.1| hypothetical protein CLIBASIA_03260 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 107

 Score = 21.9 bits (45), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 66  HSEGKKRSHDVPSSSNQEDQRGSPSP 91
           HS+  K+  D+ ++  QE   G P P
Sbjct: 75  HSDAHKKIEDLVATKTQEITEGLPIP 100


>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 959

 Score = 21.9 bits (45), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 54 GDGCEQLVGATVHSEGKKR 72
          G G   L   T+H+EG++R
Sbjct: 37 GSGKSSLAFDTIHAEGQRR 55


>gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 673

 Score = 21.2 bits (43), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 6   ACRNLLVCILSIQCLVLFCSEIFAFEKYKAPSYPTTVALNVLSPLAPLGDGCEQLVGA 63
           + RN+   ++S+ C  LF  +  ++      S P  +A+      A L  G +  +G+
Sbjct: 581 SSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIE-----AGLRQGWDAFIGS 633


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1828

 Score = 20.8 bits (42), Expect = 7.2,   Method: Composition-based stats.
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 59   QLVGATVHSEGKKRSH 74
            +++ ++ HS+GK  SH
Sbjct: 1693 KILSSSTHSKGKSSSH 1708


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,946
Number of Sequences: 1233
Number of extensions: 2674
Number of successful extensions: 8
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 113
length of database: 328,796
effective HSP length: 63
effective length of query: 50
effective length of database: 251,117
effective search space: 12555850
effective search space used: 12555850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 33 (17.3 bits)