HHsearch alignment for GI: 254780845 and conserved domain: COG3396
>COG3396 Uncharacterized conserved protein [Function unknown].
Probab=95.69 E-value=0.18 Score=29.21 Aligned_cols=225 Identities=17% Similarity=0.135 Sum_probs=133.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Q ss_conf 99899999999999998643333455666401330577999999999999997789999999971-46469999999720
Q gi|254780845|r 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREV 152 (352)
Q Consensus 74 Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l-~~~~~e~f~~~~~~ 152 (352)
T Consensus 12 ~p~~~~~tLi~~i~~~ad~elv~~~r~~-eW~~~AP~Le~~~ala~~vqDe~GHg~~l~~laeel~Gk~~~d~la~~r~g 90 (265)
T COG3396 12 MPEAYRRTLIRLISQLADSELVLALREG-EWLGHAPTLEEDLALANIVQDEMGHGWLLYRLAEELEGKGREDDLAYLRDG 90 (265)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 7999999999999983216888724578-631468608999999999899886899999999996698759899998642
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHH
Q ss_conf 018987788999997401210102677740149999999974000144411478899899-7598012899999998566
Q gi|254780845|r 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRDE 231 (352)
Q Consensus 153 ~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~-~~g~m~g~~~~i~~I~RDE 231 (352)
T Consensus 91 ~~---k~n~~~n----~P~~-----------~Wadt-~~------~~fLvD~~~~~~l~~l~~ssy~PlA~~a~k~~kEe 145 (265)
T COG3396 91 RH---KRNSLFN----LPTG-----------DWADT-IV------RGFLVDGAAIYQLEALADSSYGPLARAAQKICKEE 145 (265)
T ss_pred HH---HHHHHHH----CCCC-----------CHHHH-HH------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 88---8888870----8886-----------58888-78------88788478999899987665367999999999868
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH------HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6669999999997655375422067899999999999987------6886887518884799989999999999999999
Q gi|254780845|r 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL------EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 (352)
Q Consensus 232 ~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~------E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~ 305 (352)
T Consensus 146 ~fHl~~~~~~l~~l~~gT~~~~-~~~Q~AlN~wwp~~lemf~~~~~~~~~~a~--~~gI~~~~n~~Lrq~~i~~~~~~l~ 222 (265)
T COG3396 146 EFHLRHGKTWLKRLANGTEESR-QMAQAALNRWWPRALEMFGPSASESELSAA--KWGIKVDPNDELRQAWIKEVNEELR 222 (265)
T ss_pred HHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCHHHHH--HCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999998999999983578899-999999999989999883866443324788--7288779789999999999999999
Q ss_pred HCCCCCC-----CCC-----CCCCHHHHHHHH
Q ss_conf 7887988-----999-----888325789971
Q gi|254780845|r 306 QIGLEPL-----FKY-----TENPFPWMSEVI 327 (352)
Q Consensus 306 ~lG~~~~-----f~~-----~~nP~~W~~~~~ 327 (352)
T Consensus 223 ~~gltvPd~~l~~n~~~g~h~~~~~~~l~~~q 254 (265)
T COG3396 223 ELGLTVPDPNLHYNGKRGHHTEHLGDWLAEMQ 254 (265)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 71677786111256545876665043999999