HHsearch alignment for GI: 254780845 and conserved domain: PRK13778
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional.
Probab=95.91 E-value=0.15 Score=29.80 Aligned_cols=224 Identities=15% Similarity=0.124 Sum_probs=125.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99899999999999998643333455666401330577999999999999997789999999971464699999997200
Q gi|254780845|r 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 (352)
Q Consensus 74 Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~ 153 (352)
T Consensus 36 MP~~YR~~L~R~i~qHAhSEI-vG~lpE~~Wi~rAPsL~rK~~llAKVQDE~GHg~~ly~aaEtLG~~Reel~~~l~~g~ 114 (316)
T PRK13778 36 MPDAYRKTLIRQISQHAHSEI-VGMLPEGNWITRAPSLKRKAILLAKVQDEAGHGLYLYSAAETLGVSREELIDDLHSGK 114 (316)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 889999999999999877788-8357454510038757788999999753101699999999980999999999985585
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 18987788999997401210102677740149999999974000144411478899899759801289999999856666
Q gi|254780845|r 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 (352)
Q Consensus 154 ~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~l 233 (352)
T Consensus 115 ~---KyssiFn---------------ypt~twAD~g~ig-wLvDgAAi~n----Q~~l-~~~SYgPYaRAm~RIckEEsF 170 (316)
T PRK13778 115 A---KYSSIFN---------------YPTLTWADVGVIG-WLVDGAAIMN----QVPL-CRCSYGPYARAMVRICKEESF 170 (316)
T ss_pred C---CCCCCCC---------------CCCCHHHHHHHHH-HHHHHHHHHH----HHHH-HCCCCHHHHHHHHHHHHHHHH
T ss_conf 1---0220157---------------7641199999999-9850688873----3554-037842699999999988878
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------CCCCCCHHHH-HHHHHH
Q ss_conf 6999999999765537542206789999999999998768868875188--------------8479998999-999999
Q gi|254780845|r 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK--------------GFVGLNAPSC-EQYMQF 298 (352)
Q Consensus 234 H~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~--------------~~~Gl~~~~~-~~yi~y 298 (352)
T Consensus 171 H~RqG~~i~~~la~GT---------~~Qk~M~QdAvnRWW~p~LmmFGPpD~~s~~s~q~m~w~IK~~sNDeLRQ~Fvd~ 241 (316)
T PRK13778 171 HQRQGYEILLALAKGT---------PAQKAMVQDALNRWWWPALMMFGPPDADSPHSAQSMAWKIKRFSNDELRQKFVDA 241 (316)
T ss_pred HHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCEEEEECCCCHHHHHHHHHH
T ss_conf 9870899999998199---------9999999999999899888753889868897113102111247879999999999
Q ss_pred HHHHHHHHCCCCCC-----CCCC-----CCCHHH--HHHHHCCCCC
Q ss_conf 99999997887988-----9998-----883257--8997178867
Q gi|254780845|r 299 IANRRCHQIGLEPL-----FKYT-----ENPFPW--MSEVIDLKKE 332 (352)
Q Consensus 299 ~an~rL~~lG~~~~-----f~~~-----~nP~~W--~~~~~~~~~~ 332 (352)
T Consensus 242 -~VPqa~~lGltvPD~~L~~nee~G~~~~~~iDW~ef~~vi~g~Gp 286 (316)
T PRK13778 242 -TVPQAEVLGLTLPDPDLKWNEERGHYDFGEIDWDEFKEVIKGNGP 286 (316)
T ss_pred -HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf -878999808757980124565669855789998999999828997