HHsearch results for GI: 254780845 and protein with PDBid: 1jk0_B
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
Probab=100.00 E-value=0 Score=568.03 Aligned_cols=307 Identities=23% Similarity=0.421 Sum_probs=282.5
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13374868899800017861679999999999457987036747989985202689989999999999999864333345
Q gi|254780845|r 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 (352)
Q Consensus 19 ~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~ 98 (352)
..+++++.++++|++++|+||||+|++|++++++||+|+|||+++|++||++ ||++||++++++|++|+++|++|++
T Consensus 22 ~~~e~~l~en~~r~~~~PikY~~~~~~ykk~~~~fW~peEi~ls~D~~d~~~---Ls~~Er~~~~~~L~~~~~~D~~v~~ 98 (345)
T 1jk0_B 22 EKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSDNLVNK 98 (345)
T ss_dssp TTTCTTTSCCTTCCSCCSCSCHHHHHHHHHHHHTCCCGGGCCCTTTSTTTTT---SCTTHHHHHHHHHHHHC--------
T ss_pred CCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2368655689886243286787999999999976998201170644898986---9999999999999999999999998
Q ss_pred HHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHC
Q ss_conf 5666401330577999999999999997789999999971464699--99999720018987788999997401210102
Q gi|254780845|r 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTT 176 (352)
Q Consensus 99 ~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e--~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~ 176 (352)
++...+.+.++.||+++++++|+++|+||++|||+|+++++.++++ +|+++.+.|.++.|..|+.++++
T Consensus 99 ~~~~~~~~~i~~pE~~~~~~~q~~~E~iHs~sYs~il~~l~~d~~~~~~f~~~~~~~~~~~k~~~~~~~~~--------- 169 (345)
T 1jk0_B 99 YLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWIS--------- 169 (345)
T ss_dssp -CHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTSCSGGGGCSCHHHHHHHHHHHHTTS---------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_conf 78999998778399999999999999999999999999854674688999999843999999888775125---------
Q ss_pred CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 67774014999999997400014441147889989975980128999999985666669999999997655375422067
Q gi|254780845|r 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 (352)
Q Consensus 177 ~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~ 256 (352)
..+..+..++++ ++++|||+|||||+++++|+++|+|+|+|++|++|+|||++|+.|++.+++.++.+.|
T Consensus 170 ---~~~~~~~~~li~-~~~~Egi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~e~~------ 239 (345)
T 1jk0_B 170 ---NDDSLYAERLVA-FAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPN------ 239 (345)
T ss_dssp ---SSSCCHHHHHHH-HHHHHHTTTHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC------
T ss_pred ---CCHHHHHHHHHH-HHHCCCEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------
T ss_conf ---637889999999-8731110002420677799760974115999889886899999999999999751000------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 89999999999998768868875188847999899999999999999997887988999888325789971788675557
Q gi|254780845|r 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336 (352)
Q Consensus 257 ~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~~~~~~~~~tnFF 336 (352)
.+.+.+++++||++|.+|+.++++.+++||+++++++||+|+||+||.+||++|+|++ +||+|||++..+ .++||||
T Consensus 240 -~~~i~~~~~eave~e~~~~~~~~~~~~~gl~~~~~~~Yi~y~an~~L~~lG~~~~f~~-~nP~~w~~~~~~-~~ktnFF 316 (345)
T 1jk0_B 240 -PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNA-VNPFEFMEDVAT-AGKTTFF 316 (345)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSCC-----------CTHHHHHHHHHHHHTTCCCCC-----------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHC-CCCCCCC
T ss_conf -3589999999999999999854565533658999999999999999997799987899-997489998737-6776445
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 66711221058677
Q gi|254780845|r 337 ETRVTEYQQGAELK 350 (352)
Q Consensus 337 e~~~t~Y~k~~~~~ 350 (352)
|+|||+|+|+|.+.
T Consensus 317 e~r~t~Y~k~~~~~ 330 (345)
T 1jk0_B 317 EKKVSDYQKASDMS 330 (345)
T ss_dssp --------------
T ss_pred CCCHHHCCCCCCCC
T ss_conf 77633120355566