HHSEARCH alignment of GI: 254780845 and SCOP domain: d1jk0b_

Alignment
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
Probab=100.00  E-value=0  Score=505.43  Aligned_cols=272  Identities=22%  Similarity=0.376  Sum_probs=252.1

Q ss_pred             HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13374868899800017861679999999999457987036747989985202689989999999999999864333345
Q gi|254780845|r   19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN   98 (352)
Q Consensus        19 ~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~   98 (352)
                      ..+++++.++++|++++|+||||+|++|++++++||+|+|||+++|++||++   ||++||++++++|++|+++|++|++
T Consensus        12 ~~~e~~l~e~~~r~~l~Piky~~~~~~y~~~~~~fW~peEi~l~~D~~d~~~---Lt~~Ek~~~~~~l~~f~~~D~~v~~   88 (285)
T d1jk0b_          12 EKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSDNLVNK   88 (285)
T ss_dssp             TTTCTTTSCCTTCCSCCSCSCHHHHHHHHHHHHTCCCGGGCCCTTTSTTTTT---SCTTHHHHHHHHHHHHC--------
T ss_pred             CCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             1278766789986356687687999999999976998300370621898986---9999999999999999998633654


Q ss_pred             HHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHC
Q ss_conf             566640133057799999999999999778999999997146469--999999720018987788999997401210102
Q gi|254780845|r   99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTT  176 (352)
Q Consensus        99 ~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~--e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~  176 (352)
                      ++...+++.++.||+++++++|+++|+||++|||+++++++++++  ++|+++.+.|.+++|++|+.++++.        
T Consensus        89 ~~~~~i~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~~l~~~~e~~~~f~~~~~~~~~~~k~~~~~~~~~~--------  160 (285)
T d1jk0b_          89 YLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWISN--------  160 (285)
T ss_dssp             -CHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTSCSGGGGCSCHHHHHHHHHHHHTTSS--------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCC--------
T ss_conf             327666564044799999999999997999999999999656758889999886258899776666631143--------


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             67774014999999997400014441147889989975980128999999985666669999999997655375422067
Q gi|254780845|r  177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE  256 (352)
Q Consensus       177 ~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~  256 (352)
                          ....+..+++ +++++||++|||||+++++|+++|+|+|+++++++|+|||++|+.|++.+++++..+.|      
T Consensus       161 ----~~~~~~~~~i-~~~~~Egi~f~s~Fa~~~~l~~~~~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~------  229 (285)
T d1jk0b_         161 ----DDSLYAERLV-AFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPN------  229 (285)
T ss_dssp             ----SSCCHHHHHH-HHHHHHHTTTHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC------
T ss_pred             ----CHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------
T ss_conf             ----3167999999-99988888724505899986320014159999999999999999899899998752454------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             899999999999987688688751888479998999999999999999978879889
Q gi|254780845|r  257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF  313 (352)
Q Consensus       257 ~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f  313 (352)
                       .+++.+++++||++|++|++++++.+++|||++++++||+|+||+||.+||++|+|
T Consensus       230 -~~~i~~l~~eAv~lE~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an~~L~~lG~~~~y  285 (285)
T d1jk0b_         230 -PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYY  285 (285)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTTSCC-----------CTHHHHHHHHHHHHTTCCCCC
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             -99999999999999999999974787689799999999999999999987699999


SCOP domain information

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]