HHSEARCH alignment of GI: 254780845 and SCOP domain: d1mtyb_

Alignment
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]}
Probab=97.78  E-value=0.0015  Score=40.46  Aligned_cols=218  Identities=12%  Similarity=-0.005  Sum_probs=143.8

Q ss_pred             CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CH--HH
Q ss_conf             8998999-9999999999864333345566640133057799999999999999778999999997146-----46--99
Q gi|254780845|r   73 GLTDDER-LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-----DE--GE  144 (352)
Q Consensus        73 ~Lt~~Ek-~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~-----~~--~e  144 (352)
                      +|++..+ +++...|+-+...+-....+. ..+....+.+.++.+..+|++.|..|++.-.+.+.-|++     +.  +.
T Consensus       130 ~l~~~w~~~~L~~~l~p~r~~E~ga~~~~-a~i~r~~~g~~i~~a~~fqa~DeLR~aQ~i~~~~~~L~~~~pgf~~~~~~  208 (384)
T d1mtyb_         130 AMNPTWRDEFINRYWGAFLFNEYGLFNAH-SQGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDESTAV  208 (384)
T ss_dssp             GSCHHHHHTTTTTHHHHHHHHHHHHHHTT-HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHH
T ss_pred             CCCHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             19999999999998602407999999878-99986468689999999987668889999999999998747898623379


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHH
Q ss_conf             99999720018987788999997401210102677740149999999974000144---411478899899759801289
Q gi|254780845|r  145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRANKMVGIA  221 (352)
Q Consensus       145 ~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~---Fys~Fa~~~~l~~~g~m~g~~  221 (352)
                      -=..+.++|..+.--+++.+....             .....+.+++.++++|+++   |++.|..-.+ +.+| =.-+.
T Consensus       209 ~k~~W~~dp~wQg~R~~vE~~l~~-------------~~Dw~E~~vA~Nlv~dpll~~L~~~~f~~~~A-a~nG-D~~t~  273 (384)
T d1mtyb_         209 PKAEWTNGEVYKSARLAVEGLWQE-------------VFDWNESAFSVHAVYDALFGQFVRREFFQRLA-PRFG-DNLTP  273 (384)
T ss_dssp             HHHHHHHCSTTHHHHHHHHHHHHT-------------CCCHHHHHHHHHHTHHHHHHHHHHHTTHHHHG-GGGT-CCHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCC-CCHHH
T ss_conf             988860480657799999989871-------------14499999998764886448999999999999-9769-80479


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHH
Q ss_conf             9999998566666999999999765537542---2067899999999999987688688751888479-99899999999
Q gi|254780845|r  222 EQYQYIMRDESLHLNFGIDVINQIKIENPHL---WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQ  297 (352)
Q Consensus       222 ~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l---~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~G-l~~~~~~~yi~  297 (352)
                      ..+.....||..|...+..+++.+..++|+.   ....++.|+.+....|.+.=.++.- +++....| -+.+.+..-++
T Consensus       274 ~l~~s~q~D~~Rh~~~~~alvk~~l~~dpe~~~~Nr~llq~Wi~~W~~~a~~Al~~~~p-i~s~~p~~~~~~~~~~a~~~  352 (384)
T d1mtyb_         274 FFINQAQTYFQIAKQGVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWLEPTIAALRDFMG-LFAKLPAGTTDKEEITASLY  352 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GGGGSCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHH
T ss_conf             99999998999999899999999984585332668999999999999999999998768-76106778788899999999


Q ss_pred             HHHHHHHHHC
Q ss_conf             9999999978
Q gi|254780845|r  298 FIANRRCHQI  307 (352)
Q Consensus       298 y~an~rL~~l  307 (352)
                      .+.+.-....
T Consensus       353 rv~~d~~~~~  362 (384)
T d1mtyb_         353 RVVDDWIEDY  362 (384)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHCC
T ss_conf             9998765302


SCOP domain information

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Methane monooxygenase hydrolase beta subunit
species: Methylococcus capsulatus [TaxId: 414]