HHSEARCH alignment of GI: 254780845 and SCOP domain: d1mtyd_

Alignment
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]}
Probab=98.67  E-value=7.9e-06  Score=56.00  Aligned_cols=219  Identities=13%  Similarity=0.064  Sum_probs=122.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCHH---HH
Q ss_conf             6899899999999999998643333455666401330577999999999999997789999999971---46469---99
Q gi|254780845|r   72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEG---EL  145 (352)
Q Consensus        72 ~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l---~~~~~---e~  145 (352)
                      .++++.-.+.++..|+.+..++-...... ..+.+..+.++++.+.++|++.|++|++..++...-+   +.++.   ..
T Consensus        79 ~~~d~~wl~~lk~~ls~~~hgE~gA~l~~-A~l~r~apt~~ak~~aa~Qt~DE~RH~q~~a~~~~~l~~~~~d~~~~~~~  157 (512)
T d1mtyd_          79 VRVHPKWNETMKVVSNFLEVGEYNAIAAT-GMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDA  157 (512)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTTTTH
T ss_pred             CCCCHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             02797899999998545477999999999-99987577588999999987689999999999999998647985202244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             9999720018987788999997401210102677740149999999974000144---4114788998997598012899
Q gi|254780845|r  146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRANKMVGIAE  222 (352)
Q Consensus       146 f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~---Fys~Fa~~~~l~~~g~m~g~~~  222 (352)
                      ......+|.-+.-    .+..+++-          ....-.+..+..++++|.++   ++++|   ...+..+-=+-+.+
T Consensus       158 r~~~~~~Pi~q~~----r~lfed~l----------~~~Dw~e~~ial~~v~E~~ftnL~fv~f---~~~Aa~nGD~~~~t  220 (512)
T d1mtyd_         158 RRTRTIGPLWKGM----KRVFSDGF----------ISGDAVECSLNLQLVGEACFTNPLIVAV---TEWAAANGDEITPT  220 (512)
T ss_dssp             HHHGGGSSHHHHH----HHHHTHHH----------HSSCHHHHHHHHTTTHHHHTHHHHHHHH---HHHHHHTTCCHHHH
T ss_pred             HHHHCCCCHHHHH----HHHHHHHH----------HCCCHHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHCCCCCHHH
T ss_conf             5540227315779----99999887----------3387899987654004541107899999---99998746910999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCC-HHHHHHHH-
Q ss_conf             99999856666699999999976553754220678999999999999876886----8875188847999-89999999-
Q gi|254780845|r  223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY----AHETMPKGFVGLN-APSCEQYM-  296 (352)
Q Consensus       223 ~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~----~~~~~~~~~~Gl~-~~~~~~yi-  296 (352)
                      ++..|..||++|+..|...+..+.++ |.- -+..+..+...+-.+..+=...    .+|..+.-  -.+ ++.-++|| 
T Consensus       221 l~~SiqsDEaRH~~~g~~tL~~~l~~-~~n-~~~~q~~id~~FWr~~r~~~~l~G~~mDY~tp~r--~~s~~e~w~~~i~  296 (512)
T d1mtyd_         221 VFLSIETDELRHMANGYQTVVSIAND-PAS-AKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFK--VEPWVKTWDRWVY  296 (512)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTS-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC--SSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC-CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHH
T ss_conf             99999846756534009999999956-222-7999999999999888999999888887368764--3149999999999


Q ss_pred             HHHHH---HHHHHCCCCCC
Q ss_conf             99999---99997887988
Q gi|254780845|r  297 QFIAN---RRCHQIGLEPL  312 (352)
Q Consensus       297 ~y~an---~rL~~lG~~~~  312 (352)
                      +..+.   ++|..+|+++.
T Consensus       297 ed~~g~~~~~L~~yGl~~P  315 (512)
T d1mtyd_         297 EDWGGIWIGRLGKYGVESP  315 (512)
T ss_dssp             TTTTTHHHHTTGGGTCCCC
T ss_pred             HHHHHHHHHHHHHHCCCCC
T ss_conf             9999999999999489897


SCOP domain information

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Methane monooxygenase hydrolase alpha subunit
species: Methylococcus capsulatus [TaxId: 414]