BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate
reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
         (352 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|288941383|ref|YP_003443623.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM
           180]
 gi|288896755|gb|ADC62591.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM
           180]
          Length = 458

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 232/349 (66%), Positives = 283/349 (81%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  +  G  RV VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M  
Sbjct: 110 ATGLESLAMGASRVRVDDKRIINCRADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNA 169

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DLALWK  +GLT+DERL++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 170 DLALWKDPHGLTEDERLIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 229

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY++ SLGLDEGE+FNMYREVP++  KA WAL +TQ L+ P F TGT + DQ
Sbjct: 230 EALHTHAYQYVVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPHFQTGTPENDQ 289

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L++L  FYV+FEG++FY GF QILS+GR NKM G AEQ+QYI+RDES+H+NFGIDVIN
Sbjct: 290 KLLRELVAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVIN 349

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EF+Q+   M+ EA  LE  YAH+TMP+G +GLNA   E Y+ FIANRR
Sbjct: 350 QIKIENPHLWTPEFRQELVGMIREAVELEARYAHDTMPRGVLGLNAQMFEDYLHFIANRR 409

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL   +    NPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 410 CAQIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALNWD 458


>gi|53804295|ref|YP_114081.1| ribonucleotide-diphosphate reductase subunit beta [Methylococcus
           capsulatus str. Bath]
 gi|53758056|gb|AAU92347.1| ribonucleoside-diphosphate reductase, beta subunit [Methylococcus
           capsulatus str. Bath]
          Length = 403

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 229/349 (65%), Positives = 286/349 (81%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  I+ G +R+ VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M  
Sbjct: 55  ATGLENIEMGARRIQVDDKRIINCRADLNQLVPFKYQWAWQKYLDACANHWMPQEINMNA 114

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWKS +GLT DER++IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 115 DIALWKSADGLTPDERIIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 174

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY++ SLGLDEGE+FNMYREVP++  KA WAL +TQ L+ P F TGT + DQ
Sbjct: 175 EALHTHAYQYVVESLGLDEGEVFNMYREVPAVARKAEWALPFTQYLADPYFKTGTPENDQ 234

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L++L  FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVIN
Sbjct: 235 KLLRELIAFYVIFEGIFFYVGFTQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVIN 294

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT  F+ +   M+ EA  +E  YA++TMP+G +GLNAP  ++Y+QFIANRR
Sbjct: 295 QIKVENPHLWTDGFKVEMVQMIREAVDIETQYAYDTMPRGILGLNAPMFKEYLQFIANRR 354

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL   +    NPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 355 CAQIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGTLSWD 403


>gi|300113307|ref|YP_003759882.1| ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113]
 gi|299539244|gb|ADJ27561.1| Ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113]
          Length = 412

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 231/347 (66%), Positives = 284/347 (81%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G+  I+ G  R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M  D+
Sbjct: 66  GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA
Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VH+H +QY + SLGLDEGE+FNMYREVP++  KA WAL +TQ L+ P F TGT + DQ+ 
Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI
Sbjct: 246 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 305

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLW+  F+Q++  M+ EA  LE  YAH+TMP+G +GLNAP  E+Y++FIANRRC 
Sbjct: 306 KLENPHLWSDSFKQETLRMIQEAVSLETQYAHDTMPRGVLGLNAPMFEEYLKFIANRRCA 365

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL   +    NPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 366 QIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412


>gi|312795100|ref|YP_004028022.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
           rhizoxinica HKI 454]
 gi|312166875|emb|CBW73878.1| Ribonucleoside-diphosphate reductase beta chain (EC 1.17.4.1)
           [Burkholderia rhizoxinica HKI 454]
          Length = 416

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 220/351 (62%), Positives = 269/351 (76%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
              +  SP  A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M
Sbjct: 66  DQQSNASPAPAPEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 125

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+ALWK  NGLTDDER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQA
Sbjct: 126 SRDIALWKDPNGLTDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 185

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ PSF TGT +A
Sbjct: 186 FEEAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPSFKTGTLEA 245

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ+ L+ L VF  V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+
Sbjct: 246 DQKLLKSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 305

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIK+ENPHLWT  F+++   +   A  LE  YA +TMP+G +GLNA   + Y++FI N
Sbjct: 306 INQIKLENPHLWTPAFREEICGLFKHAVELEYRYAEDTMPRGVLGLNAGMFKSYLRFICN 365

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC QIGLEPLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 366 RRCQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416


>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040522|gb|ACT57318.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040641|gb|ACT57437.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 352

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 352/352 (100%), Positives = 352/352 (100%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP
Sbjct: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ
Sbjct: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD
Sbjct: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID
Sbjct: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA
Sbjct: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD
Sbjct: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352


>gi|220935777|ref|YP_002514676.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997087|gb|ACL73689.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 408

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 226/349 (64%), Positives = 287/349 (82%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           NTGL  I+ G +R+ VDDK+++N R+D+NQL+P KY WAW+KYL  C NHWMP E+ M  
Sbjct: 60  NTGLEDIELGAERIRVDDKKIINCRADLNQLVPFKYQWAWQKYLDGCANHWMPQEINMNA 119

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 120 DIALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 179

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY + SLGLDEGE+FNMYREVP++  KA WAL +T+ L+ P F TGT + DQ
Sbjct: 180 EALHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTRYLADPDFHTGTPENDQ 239

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L++L  FYV+FEG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVIN
Sbjct: 240 KLLRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVIN 299

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLWT  F+++ RTM+ +A  LE  YA +TMP+G +G+NA   E+Y+ FIANRR
Sbjct: 300 QIKVENPHLWTAAFKEEMRTMIRDAVELEAQYARDTMPRGVLGMNAAMFEEYLHFIANRR 359

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL  ++   ENPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 360 CAQIGLAEIYPGAENPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 408


>gi|77165986|ref|YP_344511.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosococcus
           oceani ATCC 19707]
 gi|254436303|ref|ZP_05049809.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus
           oceani AFC27]
 gi|76884300|gb|ABA58981.1| Ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC
           19707]
 gi|207087993|gb|EDZ65266.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus
           oceani AFC27]
          Length = 412

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 231/347 (66%), Positives = 284/347 (81%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G+  I+ G  R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M  D+
Sbjct: 66  GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA
Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VH+H +QY + SLGLDEGE+FNMYREVP++  KA WAL +TQ L+ P F TGT + DQ+ 
Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI
Sbjct: 246 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 305

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K+ENPHLW+  F+Q++  M+ EA  LE  YAH+TMP+G +GLNAP  E+Y++FIANRRC 
Sbjct: 306 KLENPHLWSDSFKQETLRMIQEAVSLETQYAHDTMPRGVLGLNAPMFEEYLKFIANRRCA 365

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL   +    NPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 366 QIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412


>gi|307731037|ref|YP_003908261.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003]
 gi|307585572|gb|ADN58970.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003]
          Length = 411

 Score =  349 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 218/358 (60%), Positives = 270/358 (75%), Gaps = 7/358 (1%)

Query: 2   ANNTGLSPIQAGEK-------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54
           AN+  ++P+  G         RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHW
Sbjct: 54  ANDIAVAPVARGAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHW 113

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           MP EV M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECR
Sbjct: 114 MPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 173

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
           Q+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + Y   L+ P F
Sbjct: 174 QFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGF 233

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
            TGT + DQ  L+ L VF  V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H
Sbjct: 234 KTGTLETDQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMH 293

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
            NFGID+INQIK+ENP LWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + 
Sbjct: 294 CNFGIDLINQIKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKS 353

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Y++FI NRRC QIGL+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 354 YLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 411


>gi|148546452|ref|YP_001266554.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           putida F1]
 gi|148510510|gb|ABQ77370.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida F1]
          Length = 415

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 277/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 64  LDVAEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVE 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW    ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 364 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|292490774|ref|YP_003526213.1| ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
 gi|291579369|gb|ADE13826.1| Ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
          Length = 415

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 230/347 (66%), Positives = 285/347 (82%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           G+  I+ G  R+ VDDKR++N R+D+NQL+P KY WAWEKYL+ C NHWMP E+ M  D+
Sbjct: 69  GIENIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLNGCANHWMPQEINMNADI 128

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA
Sbjct: 129 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 188

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VH+H +QY + SLGLDEGE+FNMYREVP++  KA WAL +TQ L+ P F TGT + DQ+ 
Sbjct: 189 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQYLADPQFHTGTDENDQKL 248

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L++L  FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI
Sbjct: 249 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 308

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLWT  F+Q++  M+ EA  LE  YA++TMP+G +GLNAP  ++Y++FIANRRC 
Sbjct: 309 KIENPHLWTDSFKQETIQMIREAVSLETQYAYDTMPRGVLGLNAPMFDEYLKFIANRRCA 368

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           QIGL   +    NPFPWMSE++DLKKEKNFFETRVTEYQ G  LKWD
Sbjct: 369 QIGLPEQYPGASNPFPWMSEILDLKKEKNFFETRVTEYQTGGALKWD 415


>gi|226945386|ref|YP_002800459.1| ribonucleotide-diphosphate reductase subunit beta [Azotobacter
           vinelandii DJ]
 gi|226720313|gb|ACO79484.1| Ribonucleoside-diphosphate reductase beta subunit [Azotobacter
           vinelandii DJ]
          Length = 416

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 277/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP E+ 
Sbjct: 65  LDIREGLEDLEGAAARVRVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEIN 124

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS +GLT+DER +IKRNLGFF++++SLVANN+ LAIYR ++NPECRQY+LRQ
Sbjct: 125 MNADIALWKSADGLTEDERRIIKRNLGFFSTADSLVANNLALAIYRLITNPECRQYILRQ 184

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA+W L+YT+++S P+F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFDTGTPE 244

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D++ L++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDRQLLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 304

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLW  E + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 305 MINQIKIENPHLWDAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNATMMEDYLKFIA 364

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  Q+GL   +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 365 NRRLSQLGLPEQYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|91785256|ref|YP_560462.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           xenovorans LB400]
 gi|91689210|gb|ABE32410.1| Ribonucleoside-diphosphate reductase [Burkholderia xenovorans
           LB400]
          Length = 411

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 215/339 (63%), Positives = 264/339 (77%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 73  EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 132

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 133 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 192

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI AK  + + Y   L+ P+F TGT +ADQ  L+ L VF 
Sbjct: 193 IVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFA 252

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW
Sbjct: 253 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 312

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIGL+PL+
Sbjct: 313 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 372

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 373 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 411


>gi|330811278|ref|YP_004355740.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379386|gb|AEA70736.1| Ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 415

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 216/352 (61%), Positives = 277/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 64  LDVAEGLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTPD 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|110635036|ref|YP_675244.1| ribonucleotide-diphosphate reductase subunit beta [Mesorhizobium
           sp. BNC1]
 gi|110286020|gb|ABG64079.1| ribonucleotide reductase [Chelativorans sp. BNC1]
          Length = 369

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 273/351 (77%), Positives = 304/351 (86%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            + TGL  I+ G  RV+VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M
Sbjct: 19  TDATGLGTIERGAGRVSVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSM 78

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 79  QADIALWKSRDGLTEDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 138

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL+YT+ L  P+F TGT +A
Sbjct: 139 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALEYTRHLDDPNFRTGTPEA 198

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV
Sbjct: 199 DQAFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 258

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIK ENPHLWT EFQ++ R ML +A  LE AY  +TMP+GF+GLNA  CEQYM FIAN
Sbjct: 259 INQIKHENPHLWTPEFQEELRRMLKDAAELEAAYGRDTMPRGFLGLNAGQCEQYMHFIAN 318

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC Q+GL P+F  TENPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 319 RRCAQLGLPPVFPETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWD 369


>gi|293609145|ref|ZP_06691448.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024]
 gi|292829718|gb|EFF88080.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024]
          Length = 427

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 281/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 77  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+L+ P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPE 256

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 317 MINQIKIENPHLWTAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|209885874|ref|YP_002289731.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha
           carboxidovorans OM5]
 gi|209874070|gb|ACI93866.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha
           carboxidovorans OM5]
          Length = 377

 Score =  347 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 273/351 (77%), Positives = 299/351 (85%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A  TGL  I     RV+VD+KRM+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M
Sbjct: 27  AEQTGLGEIDRTGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLSGCNNHWMPTEVSM 86

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKS++GLTDDER  IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 87  QADIALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 146

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L  P F TGT +A
Sbjct: 147 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTKNLDDPDFKTGTLEA 206

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV
Sbjct: 207 DQAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 266

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIK+ENPHLWTK FQ + R M+ EA  LE AY  +TMP+GF+GLNA  CEQYM FIAN
Sbjct: 267 INQIKLENPHLWTKAFQDEVRGMISEAAGLEAAYGRDTMPRGFLGLNAALCEQYMHFIAN 326

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC QIGL P+F  TENPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 327 RRCAQIGLAPVFAETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWD 377


>gi|296160506|ref|ZP_06843322.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1]
 gi|295889255|gb|EFG69057.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1]
          Length = 415

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 215/339 (63%), Positives = 264/339 (77%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 77  EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 136

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 137 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 196

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI AK  + + Y   L+ P+F TGT +ADQ  L+ L VF 
Sbjct: 197 IVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFA 256

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW
Sbjct: 257 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 316

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIGL+PL+
Sbjct: 317 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 376

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 377 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 415


>gi|192360823|ref|YP_001982048.1| ribonucleotide-diphosphate reductase subunit beta [Cellvibrio
           japonicus Ueda107]
 gi|190686988|gb|ACE84666.1| ribonucleoside reductase, beta subunit [Cellvibrio japonicus
           Ueda107]
          Length = 429

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 222/352 (63%), Positives = 285/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G  R+ VDDKRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 78  LDPAPGLEELEMGAARIQVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 137

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKSK+GLT+DER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQ
Sbjct: 138 MTADIALWKSKDGLTEDERRIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQ 197

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +FEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W+L +T +L +P+FTTGT +
Sbjct: 198 SFEEAIHTHAYQYCIESLGMDEGEVFNMYRELPSVANKAAWSLHHTHSLGNPTFTTGTPE 257

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQE L++L  FYVV EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 258 TDQELLRNLVAFYVVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 317

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENPHLWT EFQQ+   M+ E T LEI YA ++MP+G +G+NA   E+Y+ FIA
Sbjct: 318 VINQIKLENPHLWTAEFQQEVLQMILEGTELEIQYARDSMPRGVLGMNAAMMEEYLHFIA 377

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC Q+GL+  F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 378 NRRCAQLGLKEQFPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 429


>gi|70731866|ref|YP_261608.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           fluorescens Pf-5]
 gi|68346165|gb|AAY93771.1| ribonucleoside-diphosphate reductase, beta subunit, putative
           [Pseudomonas fluorescens Pf-5]
          Length = 415

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 216/352 (61%), Positives = 277/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 64  LDIAEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVD 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|161525957|ref|YP_001580969.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           multivorans ATCC 17616]
 gi|160343386|gb|ABX16472.1| Ribonucleoside-diphosphate reductase [Burkholderia multivorans ATCC
           17616]
          Length = 396

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 217/344 (63%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 53  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 112

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 113 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 172

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 173 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 232

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 233 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 292

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIG
Sbjct: 293 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 352

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 353 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 396


>gi|88812072|ref|ZP_01127324.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus
           mobilis Nb-231]
 gi|88790576|gb|EAR21691.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus
           mobilis Nb-231]
          Length = 370

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 220/348 (63%), Positives = 278/348 (79%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL   + G  R+ VDDKR++N R+D+NQL+P KY WAWEKYL    NHWMP E+PM  D
Sbjct: 23  TGLDAPERGAARIRVDDKRIINCRADLNQLVPFKYHWAWEKYLQGSANHWMPQEIPMGRD 82

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           + LWK ++GLT+DER ++KR+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 83  IELWKRRDGLTEDERTIVKRSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 142

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY+I SL +DEGE+FNMYREVPS+  KA WAL +T++L  P F TGT  ADQ 
Sbjct: 143 ALHTHAYQYVIESLAMDEGEVFNMYREVPSVARKAEWALPFTESLGDPDFRTGTPAADQR 202

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+DL  FYV FEG++FYTGFAQ+L++GR NKM G AEQ+QYI+RDES+HLNFGIDVINQ
Sbjct: 203 LLRDLIAFYVCFEGIFFYTGFAQVLAMGRRNKMTGTAEQFQYILRDESIHLNFGIDVINQ 262

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK ENPHLWT EFQ  ++  + E+  LE+ YA +T+P+G +GLNA   E+Y++FI NRR 
Sbjct: 263 IKQENPHLWTAEFQATAQRTILESMALEVDYARDTLPRGVLGLNAAMIEEYLRFITNRRL 322

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL   F   ENP PWMSE++DLKKEKNFFETRVTEY+ G  L W+
Sbjct: 323 AQIGLTEAFPGAENPLPWMSELVDLKKEKNFFETRVTEYRTGGALSWE 370


>gi|82703584|ref|YP_413150.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosospira
           multiformis ATCC 25196]
 gi|82411649|gb|ABB75758.1| Ribonucleoside-diphosphate reductase [Nitrosospira multiformis ATCC
           25196]
          Length = 408

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 217/339 (64%), Positives = 272/339 (80%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RV+V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP E+ M  D+ALWK  NG
Sbjct: 70  HRRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEINMSRDIALWKDPNG 129

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H +QY
Sbjct: 130 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHVTNPECRQYLLRQAFEEAIHTHAYQY 189

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI  K  + + +  TL+ PSF TGT +ADQ+ L+ L VF 
Sbjct: 190 IVESLGLDEGEIFNAYHEVRSIREKDEFLIPFIDTLTDPSFRTGTLEADQKLLKSLIVFA 249

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDV+NQIK+ENPHLW
Sbjct: 250 CIMEGLFFYVGFIQILALGRQNKMTGSAEQYQYILRDESMHCNFGIDVVNQIKMENPHLW 309

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           TKEF+ +   ++ +A  LE  YA +TMP+G +GLNAP  ++Y+++IANRRC QIGL+ L+
Sbjct: 310 TKEFRSEISALMQKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRYIANRRCQQIGLDILY 369

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
               NPFPWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 370 PGASNPFPWMSEMIDLKKEKNFFETRVTEYQTGGVLNWD 408


>gi|88705571|ref|ZP_01103281.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter
           litoralis KT71]
 gi|88700084|gb|EAQ97193.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter
           litoralis KT71]
          Length = 469

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 216/352 (61%), Positives = 279/352 (79%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G  RV++D+K M+N R+D+NQL+P KY WAW+KY+  C NHWMP EV 
Sbjct: 118 LDVAPGLEELEMGASRVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVN 177

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WK+  GLTDDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ
Sbjct: 178 MTADVATWKNPEGLTDDERRIVLRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQ 237

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W++ +T  LS P+F TGT +
Sbjct: 238 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSISHTHELSDPNFRTGTLE 297

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           +DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 298 SDQTLLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 357

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENP LWT+EF+Q++  M+ E T LEI YA +TMP+G +G+NA   E+Y+QFIA
Sbjct: 358 VINQIKLENPQLWTEEFKQEAIQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIA 417

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL   F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 418 NRRLSQIGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 469


>gi|110833571|ref|YP_692430.1| ribonucleotide-diphosphate reductase subunit beta [Alcanivorax
           borkumensis SK2]
 gi|110646682|emb|CAL16158.1| ribonucleoside reductase, beta subunit [Alcanivorax borkumensis
           SK2]
          Length = 430

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 221/352 (62%), Positives = 279/352 (79%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M    G++ ++    RV VDDKRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 79  MDIEDGVAELEGAAGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 138

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  DLALWK  +GLTDDER ++KRNLGFFA+++SLVANN+VLAIYR ++NPECRQY+LRQ
Sbjct: 139 MNADLALWKKADGLTDDERRIVKRNLGFFATADSLVANNLVLAIYRLITNPECRQYILRQ 198

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +FEEA+H+H +QY I SLG+DEGE+FNMY+E+PS+  KA W +QYT+ LS P FTTGT +
Sbjct: 199 SFEEAIHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTPE 258

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGID
Sbjct: 259 TDKALLENLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGID 318

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENPHLW  + + K+  M+ E T LEI YA +TMP+G +G+NA   E+Y+QFIA
Sbjct: 319 VINQIKLENPHLWDAQMRDKATQMILEGTELEIQYARDTMPRGVLGMNAAMMEEYLQFIA 378

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  Q+GL   FK   NPFPWMSE++DL+KEKNFFETRVTEYQ G  L W+
Sbjct: 379 NRRLAQLGLPEQFKGVNNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWE 430


>gi|187925407|ref|YP_001897049.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           phytofirmans PsJN]
 gi|187716601|gb|ACD17825.1| Ribonucleoside-diphosphate reductase [Burkholderia phytofirmans
           PsJN]
          Length = 415

 Score =  345 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 215/339 (63%), Positives = 264/339 (77%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 77  EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 136

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 137 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 196

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI AK  + + Y   L+ P+F TGT +ADQ  L+ L VF 
Sbjct: 197 IVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFA 256

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW
Sbjct: 257 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 316

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIGL+PL+
Sbjct: 317 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 376

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 377 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 415


>gi|256377255|ref|YP_003100915.1| ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM
           43827]
 gi|255921558|gb|ACU37069.1| Ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM
           43827]
          Length = 358

 Score =  345 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 265/347 (76%), Positives = 296/347 (85%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           GL  I+ G  RV+VDDK M+NAR+DVNQLLPLKY WAWEKYL+ C NHWMPTEV MQ D+
Sbjct: 12  GLGEIERGAGRVHVDDKAMINARADVNQLLPLKYHWAWEKYLAGCANHWMPTEVSMQADI 71

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           ALW+S NGLT DER  IKRNLGFFA+SESLVANN+VLA+YR+++NPECRQYLLRQAFEEA
Sbjct: 72  ALWRSPNGLTADERHAIKRNLGFFATSESLVANNVVLAVYRNITNPECRQYLLRQAFEEA 131

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VH+HTF+YI +SLGLDEGELFNMYREVPSIT KA WAL+YT++L  P F TGT +ADQ F
Sbjct: 132 VHTHTFEYICSSLGLDEGELFNMYREVPSITDKAAWALKYTKSLEDPEFRTGTPEADQAF 191

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID INQI
Sbjct: 192 LRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDAINQI 251

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           KIENPHLW + FQ + RTML EA  LEIAY  +TMP G +GLNA  CEQYM+FI NRRC 
Sbjct: 252 KIENPHLWGEAFQAEVRTMLAEACELEIAYGRDTMPNGLLGLNAELCEQYMRFITNRRCA 311

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q+GLEP+F  TENPFPWMSE +DLKKEKNFFETRVTEY  G  L WD
Sbjct: 312 QLGLEPVFAATENPFPWMSEAVDLKKEKNFFETRVTEYASGGTLDWD 358


>gi|262376783|ref|ZP_06070011.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           lwoffii SH145]
 gi|262308493|gb|EEY89628.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           lwoffii SH145]
          Length = 427

 Score =  344 bits (883), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 282/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 77  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPE 256

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQILLRNLIAFYCVLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENP LWT EFQ++   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FIA
Sbjct: 317 MINQIKIENPGLWTTEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAGMMEEYLKFIA 376

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 377 NRRLAQLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|170699976|ref|ZP_02891003.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria
           IOP40-10]
 gi|170135124|gb|EDT03425.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria
           IOP40-10]
          Length = 403

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|115350552|ref|YP_772391.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           ambifaria AMMD]
 gi|172059584|ref|YP_001807236.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           ambifaria MC40-6]
 gi|115280540|gb|ABI86057.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria AMMD]
 gi|171992101|gb|ACB63020.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria
           MC40-6]
          Length = 403

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|72163401|ref|YP_291058.1| ribonucleotide-diphosphate reductase subunit beta [Thermobifida
           fusca YX]
 gi|71917133|gb|AAZ57035.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
          Length = 354

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 274/350 (78%), Positives = 309/350 (88%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           N TGL  IQ+G  RV+V+DKRM+N+R+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV MQ
Sbjct: 5   NTTGLGEIQSGAARVDVEDKRMINSRADVNQLLPLKYRWAWEKYLAACNNHWMPTEVSMQ 64

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALWKSK+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YRHL+NPECRQYLLRQAF
Sbjct: 65  ADIALWKSKDGLTEDERLMVKRNLGFFATAESLVANNIVLAVYRHLTNPECRQYLLRQAF 124

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEAVH+HTFQYI  SLGLDEGELFNMYREVPSITAK  WAL+YT+ L +P+FTTGT +AD
Sbjct: 125 EEAVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALRYTRNLENPNFTTGTPEAD 184

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q FL+DL  FYVV EGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI
Sbjct: 185 QAFLRDLVAFYVVLEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 244

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIKIENPHLWT+EFQ + RTML EA  LE AY  ETMP+G +GLNA  CEQYM+FI +R
Sbjct: 245 NQIKIENPHLWTEEFQDEVRTMLIEACELEAAYGRETMPRGILGLNAKLCEQYMRFITDR 304

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           R  Q+GL P+F  TENPFPWMSE++DLKKEKNFFETRV EYQ G+ L WD
Sbjct: 305 RAEQLGLAPIFGETENPFPWMSEMMDLKKEKNFFETRVIEYQTGSGLSWD 354


>gi|169797064|ref|YP_001714857.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AYE]
 gi|213156529|ref|YP_002318190.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii AB0057]
 gi|215484526|ref|YP_002326761.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter
           baumannii AB307-0294]
 gi|239501302|ref|ZP_04660612.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AB900]
 gi|260555643|ref|ZP_05827863.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|301345633|ref|ZP_07226374.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AB056]
 gi|301512780|ref|ZP_07238017.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AB058]
 gi|301596291|ref|ZP_07241299.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AB059]
 gi|169149991|emb|CAM87885.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii AYE]
 gi|193076530|gb|ABO11186.2| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
           baumannii ATCC 17978]
 gi|213055689|gb|ACJ40591.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii AB0057]
 gi|213987168|gb|ACJ57467.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter
           baumannii AB307-0294]
 gi|260410554|gb|EEX03852.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii ATCC 19606]
          Length = 427

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 281/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 77  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPE 256

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 317 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|260551040|ref|ZP_05825245.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
           sp. RUH2624]
 gi|260405988|gb|EEW99475.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
           sp. RUH2624]
          Length = 427

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 281/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 77  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPE 256

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 317 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|325272776|ref|ZP_08139120.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
           TJI-51]
 gi|324102083|gb|EGB99585.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
           TJI-51]
          Length = 416

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 277/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 65  LDVAEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQ
Sbjct: 125 MTADIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQ 184

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVE 244

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 304

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW    ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 365 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|77460516|ref|YP_350023.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           fluorescens Pf0-1]
 gi|77384519|gb|ABA76032.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas
           fluorescens Pf0-1]
          Length = 416

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 215/352 (61%), Positives = 276/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 65  LDVAEGLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQ
Sbjct: 125 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQ 184

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVE 244

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 304

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAEMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 365 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|50083944|ref|YP_045454.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           sp. ADP1]
 gi|49529920|emb|CAG67632.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           sp. ADP1]
          Length = 427

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 221/351 (62%), Positives = 281/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  I+ G  RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 77  LDITAGLQEIETGAARVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER+++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERVIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQ 196

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YTQ+LS P F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVARKAAWGLKYTQSLSDPKFETGTPE 256

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+ L++L  FY V EG++FY GF QILS+GR NKM G++EQ+QYI+RDES+H+NFGID
Sbjct: 257 TDQQLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVSEQFQYILRDESMHVNFGID 316

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT EFQQ+   M+ E TLLEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 317 MINQIKIENPHLWTAEFQQEVIQMIVEGTLLEIEYARDTMPRGVLGMNAAMMEEYLKFIC 376

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   ++   NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 377 NRRLAQLGLPEQYRGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|289208615|ref|YP_003460681.1| ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix]
 gi|288944246|gb|ADC71945.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix]
          Length = 412

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 225/350 (64%), Positives = 288/350 (82%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
             TGL  ++ G +R+ VDDK+++N  +D+NQL+P KY WAW+KYL  C NHWMP E+ M 
Sbjct: 63  TGTGLEDLEMGAERIRVDDKKIINCHADLNQLVPFKYKWAWQKYLDGCANHWMPQEINMN 122

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALWK  NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAF
Sbjct: 123 ADIALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAF 182

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEA+H+H +QY + SLGLDEGE+FNMYREVPS+  KA WAL +T+ L+ P+F TGT +AD
Sbjct: 183 EEALHTHAYQYCVESLGLDEGEIFNMYREVPSVATKAEWALPFTKHLADPNFRTGTPEAD 242

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q+ L++L  FYVVFEG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVI
Sbjct: 243 QKLLRELIAFYVVFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVI 302

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIK+ENPHLWT+EF+ + RT++ +A  LE  YA +TMP+G +G+NA   E+Y+ FIANR
Sbjct: 303 NQIKVENPHLWTEEFKNEMRTLISDAVELEAQYARDTMPRGVLGMNAQMFEEYLHFIANR 362

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RC QIGL  ++   +NPFPWMSEV+DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 363 RCAQIGLAEMYPGADNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412


>gi|184157022|ref|YP_001845361.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii ACICU]
 gi|183208616|gb|ACC56014.1| Ribonucleotide reductase, beta subunit [Acinetobacter baumannii
           ACICU]
          Length = 427

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 281/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 77  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPE 256

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 317 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|297538242|ref|YP_003674011.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301]
 gi|297257589|gb|ADI29434.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301]
          Length = 376

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 212/352 (60%), Positives = 270/352 (76%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + + T  +   +   RVN  DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV 
Sbjct: 25  IKSATAAANQPSHSGRVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVS 84

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WK    L+DDERL++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQ
Sbjct: 85  MSRDIAQWKDSTALSDDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQ 144

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
            FEEA+H+H +QYI+ SLGLDE E+FN Y+E+PSI AK ++ + +  TL+ P+F TGT +
Sbjct: 145 GFEEAIHTHAYQYIVESLGLDESEVFNAYQEIPSIKAKDDFLIPFINTLTDPAFKTGTAE 204

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQE L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID
Sbjct: 205 ADQELLRSLIVFACIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGID 264

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VIN IK+ENPHLWT EF+++ +T++ +   LE  YA  TMP+G +GLNA   ++Y++FIA
Sbjct: 265 VINTIKLENPHLWTAEFREEIKTLMQKGVELEYQYAEATMPRGVLGLNATMFKEYLRFIA 324

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+ L+    NPFPWMSE++DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 325 NRRCTQIGLDVLYPGATNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 376


>gi|78065156|ref|YP_367925.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp.
           383]
 gi|77965901|gb|ABB07281.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. 383]
          Length = 403

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|254253304|ref|ZP_04946622.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
           dolosa AUO158]
 gi|124895913|gb|EAY69793.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
           dolosa AUO158]
          Length = 403

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 217/344 (63%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIG
Sbjct: 300 NPHLWTPEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|253997287|ref|YP_003049351.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8]
 gi|253983966|gb|ACT48824.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8]
          Length = 377

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 209/339 (61%), Positives = 260/339 (76%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
             RVN  DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV M  D+A WK    
Sbjct: 39  SGRVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVSMSRDIAQWKDSTA 98

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LTDDERL++KRNLGFF +++SL ANNIVL  YRH++ PE RQYLLRQ FEEA+H+H +QY
Sbjct: 99  LTDDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPEARQYLLRQGFEEAIHTHAYQY 158

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDE E+FN Y+EV SI  K ++ + +  TL++P F TGT +ADQ+ L+ L VF 
Sbjct: 159 IVESLGLDESEVFNAYQEVASIKDKDDFLIPFINTLTNPEFKTGTAEADQQLLRSLIVFA 218

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVIN IK+ENPHLW
Sbjct: 219 CIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDVINTIKLENPHLW 278

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + + ++     LE  YA  TMP+G +GLNA   ++Y++FIANRRC QIGL+ L+
Sbjct: 279 TAEFRDEIKGLIQHGVELEYRYAEATMPRGVLGLNATMFKEYLRFIANRRCQQIGLDVLY 338

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +   NPFPWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 339 QGATNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 377


>gi|254282900|ref|ZP_04957868.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium NOR51-B]
 gi|219679103|gb|EED35452.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium NOR51-B]
          Length = 421

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 215/352 (61%), Positives = 279/352 (79%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV+VD+K M+N R+D+NQL+P KY WAW+KY+  C NHWMP EV 
Sbjct: 70  LDVAPGLEELEMGAQRVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVN 129

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WKS +GLT+DER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQ
Sbjct: 130 MTADVATWKSSDGLTEDERRIVLRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQ 189

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEG +FNMYREVPS+  KA W+L +T +LS P+F TGT +
Sbjct: 190 AFEEAIHTHAYQYCIESLGMDEGAVFNMYREVPSVARKATWSLSHTHSLSDPNFKTGTVE 249

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+ L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 250 TDQQLLRNLVGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 309

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENPHLWT EFQ++   M+ E T LEI YA +TMP+G +G+NA   E+Y+QFI 
Sbjct: 310 VINQIKLENPHLWTAEFQEEVVQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIC 369

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR +Q+GL   +   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 370 NRRLNQLGLSEQYPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 421


>gi|312960686|ref|ZP_07775192.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           fluorescens WH6]
 gi|311285212|gb|EFQ63787.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           fluorescens WH6]
          Length = 416

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 216/352 (61%), Positives = 277/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 65  LDVAEGLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 125 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 184

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D
Sbjct: 185 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVD 244

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDKELLRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 304

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 365 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|209521089|ref|ZP_03269819.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160]
 gi|209498472|gb|EDZ98597.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160]
          Length = 411

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 216/337 (64%), Positives = 265/337 (78%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGLT
Sbjct: 75  RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNGLT 134

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 135 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 194

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDEGE+FN Y EVPSI AK  + + Y   L+ P+F TGT +ADQ  L+ L VF  V
Sbjct: 195 ESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFACV 254

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLWT 
Sbjct: 255 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 314

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIGL+PL+  
Sbjct: 315 EFRAEIRAIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLYPN 374

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 375 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 411


>gi|28868867|ref|NP_791486.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213969520|ref|ZP_03397656.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           syringae pv. tomato T1]
 gi|301385974|ref|ZP_07234392.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058701|ref|ZP_07250242.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tomato K40]
 gi|302134408|ref|ZP_07260398.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852106|gb|AAO55181.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213925616|gb|EEB59175.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           syringae pv. tomato T1]
 gi|330960626|gb|EGH60886.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. maculicola str. ES4326]
 gi|331016758|gb|EGH96814.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 415

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 215/352 (61%), Positives = 275/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 64  LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK   GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVD 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|226953559|ref|ZP_03824023.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC
           27244]
 gi|294649451|ref|ZP_06726876.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226835696|gb|EEH68079.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC
           27244]
 gi|292824656|gb|EFF83434.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 427

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 223/351 (63%), Positives = 280/351 (79%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 77  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER +I R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIIMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFHTGTPE 256

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQILLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT  FQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 317 MINQIKIENPHLWTATFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 377 NRRLAQLGLPEQFAGVTNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|295677726|ref|YP_003606250.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002]
 gi|295437569|gb|ADG16739.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002]
          Length = 411

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 216/337 (64%), Positives = 265/337 (78%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGLT
Sbjct: 75  RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNGLT 134

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 135 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 194

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDEGE+FN Y EVPSI AK  + + Y   L+ P+F TGT +ADQ  L+ L VF  V
Sbjct: 195 ESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFACV 254

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLWT 
Sbjct: 255 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 314

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIGL+PL+  
Sbjct: 315 EFRAEIRAIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLYPN 374

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 375 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 411


>gi|170720377|ref|YP_001748065.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           putida W619]
 gi|169758380|gb|ACA71696.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida W619]
          Length = 416

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 277/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 65  LDIAEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQ
Sbjct: 125 MTADIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQ 184

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVE 244

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 304

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW    ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 365 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|169634186|ref|YP_001707922.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii SDF]
 gi|169152978|emb|CAP02026.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii]
          Length = 427

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 281/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 77  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPE 256

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 317 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|262373382|ref|ZP_06066661.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           junii SH205]
 gi|262313407|gb|EEY94492.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           junii SH205]
          Length = 427

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 282/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 77  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+  KA+W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKASWGLKYTQSLSDPTFHTGTPE 256

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 317 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|171318520|ref|ZP_02907672.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5]
 gi|171096306|gb|EDT41212.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5]
          Length = 403

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|94312018|ref|YP_585228.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus
           metallidurans CH34]
 gi|93355870|gb|ABF09959.1| Ribonucleoside-diphosphate reductase beta subunit [Cupriavidus
           metallidurans CH34]
          Length = 395

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 211/339 (62%), Positives = 260/339 (76%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 57  TRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 116

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H+H +QY
Sbjct: 117 LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQY 176

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF 
Sbjct: 177 IVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFA 236

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLW
Sbjct: 237 CIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLW 296

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QIGL+ LF
Sbjct: 297 TAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDQLF 356

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 357 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 395


>gi|327480258|gb|AEA83568.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           stutzeri DSM 4166]
          Length = 415

 Score =  343 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 218/352 (61%), Positives = 282/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+KRM+NAR+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 64  LDVREGLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQ
Sbjct: 124 MNADIALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMY EVPS+  KA+W L+YT+++S P+F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEVPSVAKKASWGLKYTRSISDPTFQTGTPE 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D++FL++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKQFLKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 303

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLW  E + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 304 MINQIKIENPHLWNAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 364 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|262369327|ref|ZP_06062655.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
           johnsonii SH046]
 gi|262315395|gb|EEY96434.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
           johnsonii SH046]
          Length = 427

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 221/351 (62%), Positives = 281/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 77  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFQTGTPE 256

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQILLRNLIAFYCVLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENP LWT EFQ++   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 317 MINQIKIENPSLWTAEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFIC 376

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 377 NRRLAQLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|66046950|ref|YP_236791.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. syringae B728a]
 gi|237798938|ref|ZP_04587399.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|237806191|ref|ZP_04592895.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|63257657|gb|AAY38753.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv.
           syringae B728a]
 gi|330980156|gb|EGH78342.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. aptata str. DSM 50252]
 gi|331021792|gb|EGI01849.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331027304|gb|EGI07359.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 415

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 215/352 (61%), Positives = 276/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 64  LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVD 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|134294683|ref|YP_001118418.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           vietnamiensis G4]
 gi|134137840|gb|ABO53583.1| Ribonucleoside-diphosphate reductase [Burkholderia vietnamiensis
           G4]
          Length = 403

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 215/344 (62%), Positives = 268/344 (77%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKHAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|26987912|ref|NP_743337.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           putida KT2440]
 gi|167035231|ref|YP_001670462.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           putida GB-1]
 gi|24982621|gb|AAN66801.1|AE016309_3 ribonucleoside reductase, beta subunit [Pseudomonas putida KT2440]
 gi|166861719|gb|ABZ00127.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida GB-1]
 gi|313497534|gb|ADR58900.1| NrdB [Pseudomonas putida BIRD-1]
          Length = 416

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 277/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 65  LDVAEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQ
Sbjct: 125 MTADIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQ 184

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVE 244

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 304

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW    ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 365 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|92112799|ref|YP_572727.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter
           salexigens DSM 3043]
 gi|91795889|gb|ABE58028.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens
           DSM 3043]
          Length = 420

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 220/352 (62%), Positives = 285/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G  R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL    NHWMP EV 
Sbjct: 69  LDVAAGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVN 128

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS +GLT+DER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ
Sbjct: 129 MNADIALWKSNDGLTEDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQ 188

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY + SLG+DEGE+FNMYREVPS+ AK+ W+L++TQ+L+ P F TGT +
Sbjct: 189 AFEEAIHTHAYQYCVESLGMDEGEVFNMYREVPSVAAKSAWSLKHTQSLARPDFHTGTPE 248

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQE L++L  FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D
Sbjct: 249 TDQELLRNLIAFYCVTEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVD 308

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT EFQ +   M+ E T LEIAYA ++MP+G +G+NA   E+Y+ FI 
Sbjct: 309 MINQIKIENPHLWTPEFQDEVTQMIIEGTELEIAYARDSMPRGVLGMNAAIMEEYLHFIC 368

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +   ENPFPWMSE+IDL+KEKNFFETRVTEYQ G  L WD
Sbjct: 369 NRRLAQIGLKEQYPGAENPFPWMSEIIDLRKEKNFFETRVTEYQVGGALSWD 420


>gi|262280153|ref|ZP_06057938.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
           calcoaceticus RUH2202]
 gi|262260504|gb|EEY79237.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
           calcoaceticus RUH2202]
          Length = 427

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 221/351 (62%), Positives = 281/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 77  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNLDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+L+ P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPE 256

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLW+ EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 317 MINQIKIENPHLWSAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|189349324|ref|YP_001944952.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           multivorans ATCC 17616]
 gi|221213238|ref|ZP_03586213.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD1]
 gi|189333346|dbj|BAG42416.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
           multivorans ATCC 17616]
 gi|221166690|gb|EED99161.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD1]
          Length = 403

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 217/344 (63%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|170695324|ref|ZP_02886470.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M]
 gi|170139724|gb|EDT07906.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M]
          Length = 414

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 215/339 (63%), Positives = 263/339 (77%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 76  EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 135

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 136 LTEDERRVVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 195

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EVPSI AK  + + Y   L+ P F TGT + DQ  L+ L VF 
Sbjct: 196 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGFKTGTLETDQTLLRSLIVFA 255

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW
Sbjct: 256 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 315

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIGL+PL+
Sbjct: 316 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 375

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 376 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 414


>gi|330880140|gb|EGH14289.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330966559|gb|EGH66819.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 415

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 215/352 (61%), Positives = 275/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 64  LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK   GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT D
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVD 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|332852155|ref|ZP_08433982.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6013150]
 gi|332867554|ref|ZP_08437707.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6013113]
 gi|332729527|gb|EGJ60866.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6013150]
 gi|332733971|gb|EGJ65116.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6013113]
          Length = 440

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 281/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 90  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 149

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 150 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 209

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT +
Sbjct: 210 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPE 269

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 270 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 329

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 330 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 389

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 390 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 440


>gi|113869188|ref|YP_727677.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
           eutropha H16]
 gi|113527964|emb|CAJ94309.1| Ribonucleoside-diphosphate reductase beta subunit [Ralstonia
           eutropha H16]
          Length = 395

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 211/338 (62%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGL
Sbjct: 58  RRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 117

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 118 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 177

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 178 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 237

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 238 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 297

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QIGL+ LF 
Sbjct: 298 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQIGLDQLFP 357

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 358 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 395


>gi|104780527|ref|YP_607025.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           entomophila L48]
 gi|95109514|emb|CAK14215.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           entomophila L48]
          Length = 415

 Score =  342 bits (877), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 276/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 64  LDIAEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS +GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKSMDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA W L+YT+ +S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVE 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW    ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 364 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|90022104|ref|YP_527931.1| ribonucleotide-diphosphate reductase subunit beta [Saccharophagus
           degradans 2-40]
 gi|89951704|gb|ABD81719.1| Class Ia ribonucleoside-diphosphate reductase beta subunit
           [Saccharophagus degradans 2-40]
          Length = 423

 Score =  342 bits (877), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 221/352 (62%), Positives = 285/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M    GL  ++ G +R+ VDDKRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 72  MDPTLGLEELEIGAERIEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 131

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WKS +GL++DER +I R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQ
Sbjct: 132 MTADVATWKSPDGLSEDERRIIMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQ 191

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W++ +TQ +S P+F TGT +
Sbjct: 192 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSIAHTQGMSDPTFKTGTPE 251

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQE L++L  FYV+ EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 252 ADQELLRNLIGFYVITEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 311

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENPHLWT+EFQ +++ M+ E T LEIAYA +TMP+G +G+NA   E+Y+ FIA
Sbjct: 312 VINQIKLENPHLWTEEFQAETKQMILEGTELEIAYARDTMPRGVLGMNAAMMEEYLHFIA 371

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  Q+GL   +   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L W+
Sbjct: 372 NRRMAQLGLAEAYPGAKNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWE 423


>gi|229590245|ref|YP_002872364.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           fluorescens SBW25]
 gi|229362111|emb|CAY49013.1| putative ribonucleoside-diphosphate reductase beta chain
           [Pseudomonas fluorescens SBW25]
          Length = 416

 Score =  342 bits (877), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 215/352 (61%), Positives = 277/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 65  LDVAEGLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 125 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 184

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVE 244

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDKELLRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 304

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 365 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|229592166|ref|YP_002874285.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           fluorescens SBW25]
 gi|229364032|emb|CAY51597.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas
           fluorescens SBW25]
          Length = 416

 Score =  342 bits (877), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 215/352 (61%), Positives = 277/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+KRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 65  LDVAEGLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 125 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 184

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVE 244

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDKELLRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 304

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 365 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|332872596|ref|ZP_08440564.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6014059]
 gi|332739125|gb|EGJ69984.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           baumannii 6014059]
          Length = 440

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 281/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 90  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 149

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 150 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 209

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT +
Sbjct: 210 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPE 269

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 270 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 329

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 330 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 389

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 390 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 440


>gi|302525965|ref|ZP_07278307.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. AA4]
 gi|302434860|gb|EFL06676.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. AA4]
          Length = 357

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 260/351 (74%), Positives = 297/351 (84%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            + TGL  I+ G  R+NVDDKRM+NAR+DVNQLLP+KY WAW+KYL+ACNNHWMPTEV M
Sbjct: 7   TDATGLGEIEVGAARINVDDKRMINARADVNQLLPMKYRWAWDKYLAACNNHWMPTEVAM 66

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQA
Sbjct: 67  QADIALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQA 126

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI  SLGL EGELFNMYREVPSI+ K  WAL+YTQ L +P F TGT +A
Sbjct: 127 FEEAVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEA 186

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID 
Sbjct: 187 DQAFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDC 246

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIKIENPHLWT+EFQ + R ML EA  LE+ YA +TMP+G +GL+A  CEQYM FI +
Sbjct: 247 INQIKIENPHLWTEEFQAEVRGMLQEACELEVKYARDTMPRGMLGLSADLCEQYMHFITD 306

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RR  QIGL P++   ENPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 307 RRAQQIGLPPIYGENENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 357


>gi|71737432|ref|YP_275887.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|257485935|ref|ZP_05639976.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289628680|ref|ZP_06461634.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289648392|ref|ZP_06479735.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|298487941|ref|ZP_07005980.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|302184861|ref|ZP_07261534.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. syringae 642]
 gi|71557985|gb|AAZ37196.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|298157492|gb|EFH98573.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330866023|gb|EGH00732.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330896997|gb|EGH28545.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. japonica str. M301072PT]
 gi|330986742|gb|EGH84845.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. lachrymans str. M301315]
 gi|331010341|gb|EGH90397.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 415

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 276/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 64  LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVE 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|332530699|ref|ZP_08406630.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella
           gracilis ATCC 19624]
 gi|332039867|gb|EGI76262.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella
           gracilis ATCC 19624]
          Length = 399

 Score =  342 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 206/340 (60%), Positives = 257/340 (75%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           G  R+   DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  N
Sbjct: 60  GTHRIKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPN 119

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GL++DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +Q
Sbjct: 120 GLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 179

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDE E+F+ Y EV SI  K  + L +   +  P+F TGT + DQ  L+ L VF
Sbjct: 180 YIVESLGLDESEIFSAYLEVQSIRDKDEFLLPFINAIMDPNFHTGTLETDQTLLKSLIVF 239

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP L
Sbjct: 240 ACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQL 299

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT EF+ + R +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE L
Sbjct: 300 WTPEFKAEIRGLFEKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEAL 359

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 360 FPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 399


>gi|254516739|ref|ZP_05128798.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium NOR5-3]
 gi|219675162|gb|EED31529.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium NOR5-3]
          Length = 441

 Score =  342 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 219/352 (62%), Positives = 280/352 (79%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G  RV++D+K M+N R+D+NQL+P KY WAW+KY+  C NHWMP EV 
Sbjct: 90  LDVAAGLEELEMGAARVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVN 149

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WK+  GLTDDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ
Sbjct: 150 MTADVATWKNPEGLTDDERRIILRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQ 209

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W+L +T  LS P+F TGT +
Sbjct: 210 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSLSHTHELSDPNFNTGTME 269

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           +DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 270 SDQTLLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 329

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENPHLWT+EF+Q++  M+ E T LEI YA +TMP+G +G+NA   E+Y+QFIA
Sbjct: 330 VINQIKLENPHLWTEEFKQEAIQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIA 389

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL   F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 390 NRRLSQIGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 441


>gi|323527395|ref|YP_004229548.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001]
 gi|323384397|gb|ADX56488.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001]
          Length = 414

 Score =  342 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 216/339 (63%), Positives = 265/339 (78%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 76  EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 135

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 136 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 195

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EVPSI AK  + + Y   L+ P+F TGT +ADQ  L+ L VF 
Sbjct: 196 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFA 255

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW
Sbjct: 256 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 315

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIGL+PL+
Sbjct: 316 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 375

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 376 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 414


>gi|325519933|gb|EGC99191.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp.
           TJI49]
          Length = 403

 Score =  342 bits (876), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 218/351 (62%), Positives = 271/351 (77%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A      P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M
Sbjct: 53  APQASAVPAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 112

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQA
Sbjct: 113 SRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 172

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +A
Sbjct: 173 FEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEA 232

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ+ L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+
Sbjct: 233 DQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 292

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIK+ENPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+N
Sbjct: 293 INQIKLENPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISN 352

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC QIGL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 353 RRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|221202418|ref|ZP_03575450.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD2M]
 gi|221208122|ref|ZP_03581127.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD2]
 gi|221172025|gb|EEE04467.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD2]
 gi|221177695|gb|EEE10110.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           multivorans CGD2M]
          Length = 372

 Score =  342 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 217/344 (63%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 29  PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 88

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 89  KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 148

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 149 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 208

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 209 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 268

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIG
Sbjct: 269 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 328

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 329 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372


>gi|332526550|ref|ZP_08402662.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax
           benzoatilyticus JA2]
 gi|332110818|gb|EGJ10995.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax
           benzoatilyticus JA2]
          Length = 385

 Score =  341 bits (875), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 210/354 (59%), Positives = 264/354 (74%), Gaps = 5/354 (1%)

Query: 4   NTGLSPIQAG-----EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTE 58
            T  SP+         +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E
Sbjct: 32  ATNASPVSRPAATAHTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQE 91

Query: 59  VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118
           V M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LL
Sbjct: 92  VNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLL 151

Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
           RQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I  K  + + +   +  P+F+TGT
Sbjct: 152 RQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRDKDEFLIPFIDAIMDPAFSTGT 211

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            +ADQ  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFG
Sbjct: 212 PEADQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFG 271

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
           ID+INQIK+ENP LWT  F+ + R +   A  LE  YA +TMP+G +G+NA   + Y+++
Sbjct: 272 IDLINQIKLENPQLWTPAFKAEIRALFERAVELEYRYAEDTMPRGVLGMNASMFKGYLRY 331

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           IANRR  QIGLE LF   ENPFPWMSE+IDLKKE+NFFETRV +YQ G  L WD
Sbjct: 332 IANRRATQIGLEALFPNEENPFPWMSEMIDLKKERNFFETRVIDYQSGGALSWD 385


>gi|170731918|ref|YP_001763865.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           cenocepacia MC0-3]
 gi|169815160|gb|ACA89743.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia
           MC0-3]
          Length = 403

 Score =  341 bits (875), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|299771426|ref|YP_003733452.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           sp. DR1]
 gi|298701514|gb|ADI92079.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           sp. DR1]
          Length = 427

 Score =  341 bits (875), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 221/351 (62%), Positives = 281/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 77  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNLDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+L+ P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPE 256

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLW+ EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 317 MINQIKIENPHLWSAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|107021673|ref|YP_620000.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           cenocepacia AU 1054]
 gi|116688619|ref|YP_834242.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           cenocepacia HI2424]
 gi|105891862|gb|ABF75027.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia AU
           1054]
 gi|116646708|gb|ABK07349.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia
           HI2424]
          Length = 382

 Score =  341 bits (875), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 215/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 39  PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 98

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 99  KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 158

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 159 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 218

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 219 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 278

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 279 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 338

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PL+   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 339 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 382


>gi|207744360|ref|YP_002260752.1| transmembrane ribonucleoside reductase (small chain) protein
           [Ralstonia solanacearum IPO1609]
 gi|206595765|emb|CAQ62692.1| transmembrane ribonucleoside reductase (small chain) protein
           [Ralstonia solanacearum IPO1609]
          Length = 410

 Score =  341 bits (875), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 213/338 (63%), Positives = 261/338 (77%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGL
Sbjct: 73  RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 132

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 133 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 192

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 193 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 252

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 253 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 312

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QIGLEPLF 
Sbjct: 313 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQIGLEPLFP 372

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 373 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 410


>gi|206561765|ref|YP_002232530.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           cenocepacia J2315]
 gi|254246390|ref|ZP_04939711.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
           cenocepacia PC184]
 gi|124871166|gb|EAY62882.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
           cenocepacia PC184]
 gi|198037807|emb|CAR53751.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
           cenocepacia J2315]
          Length = 403

 Score =  341 bits (875), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 216/344 (62%), Positives = 269/344 (78%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P    E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALW
Sbjct: 60  PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ 
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|300703002|ref|YP_003744604.1| ribonucleoside diphosphate reductase 1 subunit beta, ferritin-like
           [Ralstonia solanacearum CFBP2957]
 gi|299070665|emb|CBJ41960.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Ralstonia solanacearum CFBP2957]
          Length = 402

 Score =  341 bits (875), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 214/338 (63%), Positives = 261/338 (77%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGL
Sbjct: 65  RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 124

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDE E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 185 VESLGLDEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 245 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 304

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QIGLEPLF 
Sbjct: 305 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQIGLEPLFP 364

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402


>gi|83746810|ref|ZP_00943858.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia
           solanacearum UW551]
 gi|207721465|ref|YP_002251905.1| transmembrane ribonucleoside reductase (small chain) protein
           [Ralstonia solanacearum MolK2]
 gi|83726579|gb|EAP73709.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia
           solanacearum UW551]
 gi|206586625|emb|CAQ17211.1| transmembrane ribonucleoside reductase (small chain) protein
           [Ralstonia solanacearum MolK2]
          Length = 402

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 213/338 (63%), Positives = 261/338 (77%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGL
Sbjct: 65  RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 124

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 185 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 245 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 304

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QIGLEPLF 
Sbjct: 305 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQIGLEPLFP 364

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402


>gi|73542624|ref|YP_297144.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
           eutropha JMP134]
 gi|72120037|gb|AAZ62300.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134]
          Length = 394

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 210/338 (62%), Positives = 259/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+A WK  NGL
Sbjct: 57  RRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIATWKDPNGL 116

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 117 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 176

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 177 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 236

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 237 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 296

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QIGL+ LF 
Sbjct: 297 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQIGLDQLFP 356

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 357 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 394


>gi|324998522|ref|ZP_08119634.1| ribonucleoside-diphosphate reductase beta chain [Pseudonocardia sp.
           P1]
          Length = 358

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 254/350 (72%), Positives = 298/350 (85%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           + TGL  I  G   ++ DDKRM+NAR+DVNQLLPLKY WAW+KYL+ C+NHWMPTEV MQ
Sbjct: 9   DTTGLGEIDRGAAPIDADDKRMINARADVNQLLPLKYHWAWDKYLAGCSNHWMPTEVAMQ 68

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALW+S++GLTDDERLM+ RNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQ+F
Sbjct: 69  ADIALWRSRDGLTDDERLMLTRNLGFFATAESLVANNVVLAVYRHLTNPECRQYLLRQSF 128

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEAVH+HTFQY+  SLGLDEGELFN YR+VPSIT K  WAL+YTQ LS P F TGT + D
Sbjct: 129 EEAVHTHTFQYVCESLGLDEGELFNAYRQVPSITDKDAWALRYTQALSDPDFCTGTPEND 188

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           + FL+DL  FYVVFEGMWFYTGFAQIL+LGR NKMVG+AEQYQYI+RDES+HLNFGID I
Sbjct: 189 RAFLRDLVAFYVVFEGMWFYTGFAQILALGRRNKMVGVAEQYQYILRDESIHLNFGIDCI 248

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIKIENPHLWT+EF  + R MLHEA  LE+AYA +TMP+G +GL A SCEQY++FI +R
Sbjct: 249 NQIKIENPHLWTEEFAAEIRAMLHEACELEVAYARDTMPRGMLGLTAESCEQYLRFITDR 308

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           R  QIGL PLF   +NPFPWMSE +DL+KEKNFFETRVTEY+ G  L+WD
Sbjct: 309 RAEQIGLAPLFGQADNPFPWMSEAMDLRKEKNFFETRVTEYRTGGSLEWD 358


>gi|300784783|ref|YP_003765074.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
           mediterranei U32]
 gi|299794297|gb|ADJ44672.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
           mediterranei U32]
          Length = 357

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 261/351 (74%), Positives = 297/351 (84%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            + TGL  I+ G  R+NVDDKRM+NAR+DVNQLLP+KY WAWEKYL+ CNNHWMPTEV M
Sbjct: 7   TDATGLGEIEVGAARINVDDKRMINARADVNQLLPMKYKWAWEKYLAGCNNHWMPTEVAM 66

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQA
Sbjct: 67  QADIALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQA 126

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI  SLGL EGELFNMYREVPSI+ K  WAL+YTQ L +P F TGT +A
Sbjct: 127 FEEAVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEA 186

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID 
Sbjct: 187 DQAFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDC 246

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIKIENPHLWT+EFQ + R ML EA  LE+ YA +TMP+G +GL+A  CEQYM F+ +
Sbjct: 247 INQIKIENPHLWTEEFQAEVRGMLKEACELEVKYARDTMPRGMLGLSAQLCEQYMHFVTD 306

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RR  QIGL P+F  TENPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 307 RRAQQIGLAPIFGETENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 357


>gi|320323423|gb|EFW79511.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320327620|gb|EFW83632.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330876273|gb|EGH10422.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 415

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 277/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C+NHWMP EV 
Sbjct: 64  LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVE 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|255318309|ref|ZP_05359544.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           radioresistens SK82]
 gi|262379054|ref|ZP_06072210.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           radioresistens SH164]
 gi|255304621|gb|EET83803.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           radioresistens SK82]
 gi|262298511|gb|EEY86424.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           radioresistens SH164]
          Length = 427

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 223/351 (63%), Positives = 282/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 77  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPE 256

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQILLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 317 MINQIKIENPHLWTAEFQQEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFIC 376

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR +Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 377 NRRLNQLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427


>gi|226227154|ref|YP_002761260.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas
           aurantiaca T-27]
 gi|226090345|dbj|BAH38790.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas
           aurantiaca T-27]
          Length = 371

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 269/349 (77%), Positives = 297/349 (85%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  I     RV VDDK M+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV MQ 
Sbjct: 23  ATGLGEIDRHGGRVRVDDKAMINCRADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQA 82

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DLA+W+S++GLTDDER  IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFE
Sbjct: 83  DLAIWRSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFE 142

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+HTFQYI  SLGLDEGELFNMYREVPSITAKA WAL+YTQ L+ P F+TGT + DQ
Sbjct: 143 EAIHTHTFQYICESLGLDEGELFNMYREVPSITAKAAWALKYTQHLADPGFSTGTPETDQ 202

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVIN
Sbjct: 203 AFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVIN 262

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIK+ENPHLW+  FQ++ R ML EA  LE+AY  +TMP+GF+GLNA  CE YM FI NRR
Sbjct: 263 QIKVENPHLWSAAFQEEVRQMLAEACELEVAYGRDTMPRGFLGLNAALCETYMHFITNRR 322

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C Q+GL P+F  T+NPFPWMSE IDLKKEKNFFETRV EYQ G  LKWD
Sbjct: 323 CAQLGLAPVFPETDNPFPWMSEAIDLKKEKNFFETRVIEYQNGGALKWD 371


>gi|121598515|ref|YP_991780.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           mallei SAVP1]
 gi|124385654|ref|YP_001027273.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           mallei NCTC 10229]
 gi|126439848|ref|YP_001060484.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 668]
 gi|126451145|ref|YP_001082790.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           mallei NCTC 10247]
 gi|126453692|ref|YP_001067748.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 1106a]
 gi|134280207|ref|ZP_01766918.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 305]
 gi|166998593|ref|ZP_02264451.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei PRL-20]
 gi|167721297|ref|ZP_02404533.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei DM98]
 gi|167740266|ref|ZP_02413040.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 14]
 gi|167817486|ref|ZP_02449166.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 91]
 gi|167847373|ref|ZP_02472881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei B7210]
 gi|167895962|ref|ZP_02483364.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 7894]
 gi|167904346|ref|ZP_02491551.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912606|ref|ZP_02499697.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 112]
 gi|217420440|ref|ZP_03451945.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 576]
 gi|226196790|ref|ZP_03792369.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813879|ref|YP_002898330.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei MSHR346]
 gi|238561262|ref|ZP_00442338.2| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei GB8 horse 4]
 gi|242316188|ref|ZP_04815204.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1106b]
 gi|254178822|ref|ZP_04885476.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei ATCC 10399]
 gi|254199038|ref|ZP_04905453.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei S13]
 gi|254202774|ref|ZP_04909137.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei FMH]
 gi|254259655|ref|ZP_04950709.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1710a]
 gi|254299327|ref|ZP_04966777.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 406e]
 gi|121227325|gb|ABM49843.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei SAVP1]
 gi|124293674|gb|ABN02943.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei NCTC 10229]
 gi|126219341|gb|ABN82847.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 668]
 gi|126227334|gb|ABN90874.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1106a]
 gi|126244015|gb|ABO07108.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei NCTC 10247]
 gi|134248214|gb|EBA48297.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 305]
 gi|147747021|gb|EDK54098.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei FMH]
 gi|157808756|gb|EDO85926.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 406e]
 gi|160694736|gb|EDP84744.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei ATCC 10399]
 gi|169656868|gb|EDS88265.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei S13]
 gi|217395852|gb|EEC35869.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 576]
 gi|225931050|gb|EEH27058.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237506031|gb|ACQ98349.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei MSHR346]
 gi|238524965|gb|EEP88395.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei GB8 horse 4]
 gi|242139427|gb|EES25829.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1106b]
 gi|243065276|gb|EES47462.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei PRL-20]
 gi|254218344|gb|EET07728.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1710a]
          Length = 403

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 217/339 (64%), Positives = 269/339 (79%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 65  EARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 124

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 125 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 184

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+FTTGT +ADQ+ L+ L VF 
Sbjct: 185 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLKSLIVFA 244

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 245 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 304

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIGL+PLF
Sbjct: 305 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 364

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 365 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|83719302|ref|YP_441701.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           thailandensis E264]
 gi|83653127|gb|ABC37190.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           thailandensis E264]
          Length = 377

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 216/339 (63%), Positives = 268/339 (79%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 39  EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 98

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 99  LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 158

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+ L VF 
Sbjct: 159 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFA 218

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 219 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 278

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIGL+PLF
Sbjct: 279 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 338

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 339 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 377


>gi|33593916|ref|NP_881560.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
           pertussis Tohama I]
 gi|33598411|ref|NP_886054.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
           parapertussis 12822]
 gi|33603351|ref|NP_890911.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
           bronchiseptica RB50]
 gi|33563990|emb|CAE43255.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
           pertussis Tohama I]
 gi|33574540|emb|CAE39187.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
           parapertussis]
 gi|33577475|emb|CAE34740.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
           bronchiseptica RB50]
 gi|332383335|gb|AEE68182.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
           pertussis CS]
          Length = 398

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 212/349 (60%), Positives = 267/349 (76%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
              L    A   RV V DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  
Sbjct: 50  AASLGASDATAGRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSR 109

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFE
Sbjct: 110 DIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 169

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYI+ SL LDE E+FN Y EVPSI AK  + + +   ++ P+F TGT +ADQ
Sbjct: 170 EAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHTGTPEADQ 229

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L+ L VF  + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN
Sbjct: 230 KLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLIN 289

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
            IK+ENPHLWT EF+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANRR
Sbjct: 290 TIKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRR 349

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIG+EPLF   ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 350 CQQIGIEPLFPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 398


>gi|76808925|ref|YP_334881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 1710b]
 gi|254208116|ref|ZP_04914466.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei JHU]
 gi|76578378|gb|ABA47853.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
           pseudomallei 1710b]
 gi|147752010|gb|EDK59077.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei JHU]
          Length = 376

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 217/339 (64%), Positives = 269/339 (79%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 38  EARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 97

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 98  LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 157

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+FTTGT +ADQ+ L+ L VF 
Sbjct: 158 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLKSLIVFA 217

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 218 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 277

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIGL+PLF
Sbjct: 278 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 337

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 338 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 376


>gi|192291019|ref|YP_001991624.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas
           palustris TIE-1]
 gi|192284768|gb|ACF01149.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris
           TIE-1]
          Length = 373

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 264/350 (75%), Positives = 290/350 (82%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           + TGL  I  G  RV VDDKRM+NAR+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV MQ
Sbjct: 24  DTTGLGTIDRGAARVRVDDKRMINARADVNQLLPLKYHWAWEKYLAACNNHWMPTEVSMQ 83

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF
Sbjct: 84  ADIALWKSRDGLTEDERHMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAF 143

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L  P F TGT   D
Sbjct: 144 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALDYTKHLDDPHFETGTPATD 203

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q FL DL  FYVVFEGMWFYTGFAQILSLGR  KM GIAEQYQYI+RDES+HLNFGIDVI
Sbjct: 204 QAFLLDLIAFYVVFEGMWFYTGFAQILSLGRRQKMTGIAEQYQYILRDESIHLNFGIDVI 263

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIK+EN  +WT  FQ   R M+H+A  LE AY  +TMP G +GLNA  CE YM FIANR
Sbjct: 264 NQIKLENAAVWTASFQDDIRGMIHDAAELEAAYGRDTMPHGLLGLNAALCESYMHFIANR 323

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RC Q+GL P+F  T+NPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 324 RCVQLGLRPVFAETDNPFPWMSETMDLKKEKNFFETRVIEYQNGGALDWD 373


>gi|146282010|ref|YP_001172163.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           stutzeri A1501]
 gi|145570215|gb|ABP79321.1| ribonucleoside reductase, small chain [Pseudomonas stutzeri A1501]
          Length = 415

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 217/352 (61%), Positives = 282/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+KRM+NAR+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 64  LDIREGLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQ
Sbjct: 124 MNADIALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA+W L+YT+++S P+F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPE 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D++FL++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKQFLKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 303

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLW  E + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 304 MINQIKIENPHLWDAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNASMMEDYLKFIA 363

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 364 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|299134880|ref|ZP_07028072.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2]
 gi|298590690|gb|EFI50893.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2]
          Length = 373

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 269/350 (76%), Positives = 300/350 (85%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
             TGL  I     RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ
Sbjct: 24  EQTGLGAIDRSGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLAGCNNHWMPTEVSMQ 83

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALWKS++GLTDDER  IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF
Sbjct: 84  ADIALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAF 143

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L +P F+TGT++AD
Sbjct: 144 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQNLDNPDFSTGTQEAD 203

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI
Sbjct: 204 QSFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 263

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIK+EN HLWTK FQ+  R M+ +A  LE AY  +TMP+GF+GLNA  CEQYM FIANR
Sbjct: 264 NQIKLENQHLWTKAFQEDVRGMIRDAAELEAAYGRDTMPRGFLGLNAALCEQYMHFIANR 323

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RC QIGL P+F  TENPFPWMSE +DLKKEKNFFETRV EYQ G  L W+
Sbjct: 324 RCAQIGLTPVFPETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 373


>gi|238026167|ref|YP_002910398.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           glumae BGR1]
 gi|237875361|gb|ACR27694.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           glumae BGR1]
          Length = 407

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 212/339 (62%), Positives = 268/339 (79%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           ++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 69  QERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 128

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER +++RNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 129 LTEDERRIVRRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI  K  + + +  TL+ P+F TGT+DADQ+ L+ L VF 
Sbjct: 189 IVESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIHTLTDPAFVTGTQDADQKLLKSLIVFA 248

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 249 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 308

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FIANRRC QIGL+PL+
Sbjct: 309 TPEFRAEIRELFKRAVELEYRYAEDTMPRGVLGLNAAMFKSYLRFIANRRCQQIGLDPLY 368

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 369 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407


>gi|254483523|ref|ZP_05096750.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma
           proteobacterium HTCC2148]
 gi|214036244|gb|EEB76924.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma
           proteobacterium HTCC2148]
          Length = 425

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 219/352 (62%), Positives = 283/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M    GL  ++ G  RV+VD+K M+N R+D+NQL+PLKY WAW+KYL  C NHWMP E+ 
Sbjct: 74  MDVAAGLEELEMGASRVSVDEKAMINCRADLNQLVPLKYDWAWQKYLDGCANHWMPQEIN 133

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WKS +GL+DDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ
Sbjct: 134 MTADVATWKSADGLSDDERRIVMRSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQ 193

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ AKA+W+L +T +LS P+F TGT++
Sbjct: 194 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKASWSLSHTHSLSDPTFNTGTQE 253

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQE L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 254 TDQELLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 313

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENP+LWT+ FQQ+   M+ E T +EI YA +TMP+G +G+NA   E+Y+ FIA
Sbjct: 314 VINQIKLENPNLWTETFQQEVIQMILEGTEIEIQYARDTMPRGVLGMNAAIMEEYLHFIA 373

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  Q+GL   F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 374 NRRLSQLGLPEQFAGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 425


>gi|92119123|ref|YP_578852.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter
           hamburgensis X14]
 gi|91802017|gb|ABE64392.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14]
          Length = 416

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 270/351 (76%), Positives = 297/351 (84%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            + TGL  I     RV VDDKRM+NAR+DVNQLLPLKYGWAWEKYLS CNNHWMPTEV M
Sbjct: 66  TDATGLGAIDRSGGRVRVDDKRMINARADVNQLLPLKYGWAWEKYLSGCNNHWMPTEVSM 125

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 126 QADIALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 185

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI+ SLGLDEGELFNMYREV SIT KA WAL++T+ L  P F TGT +A
Sbjct: 186 FEEAVHTHTFQYIVESLGLDEGELFNMYREVSSITDKAAWALKHTRHLDDPGFKTGTPEA 245

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYVVFEGMWFYTGF QILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV
Sbjct: 246 DQAFLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 305

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIKIENPHLW+K FQ++ R ML  A  LE AY  +TMP+GF+GLNA  CEQYM  IAN
Sbjct: 306 INQIKIENPHLWSKPFQEEVRAMLKNAAELEAAYGRDTMPRGFLGLNAALCEQYMHVIAN 365

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC Q+GL P+F   +NPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 366 RRCAQLGLAPVFAEADNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 416


>gi|146308172|ref|YP_001188637.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           mendocina ymp]
 gi|145576373|gb|ABP85905.1| Ribonucleoside-diphosphate reductase [Pseudomonas mendocina ymp]
          Length = 416

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 279/352 (79%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++    RV V DK+M+NAR+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 65  LDIQEGLDDLEGAAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 125 MNADIALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 184

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA+W L+YT+++S P+F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFNTGTPE 244

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D++FL++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDRQFLKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 304

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW  + + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 365 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|54294662|ref|YP_127077.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
           pneumophila str. Lens]
 gi|53754494|emb|CAH15978.1| hypothetical protein lpl1739 [Legionella pneumophila str. Lens]
          Length = 367

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 225/349 (64%), Positives = 282/349 (80%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  ++ G  R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M  
Sbjct: 17  ATGLEALEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 76

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK   GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 77  DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 136

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L   +F TGT + DQ
Sbjct: 137 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 196

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+DL  FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 197 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 256

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EF+ +   ++ E   LE  YA +TMP G +G+NA   E+Y+ FIANRR
Sbjct: 257 QIKIENPHLWTPEFKNEIIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 316

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +QIGL   +   ENPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 317 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365


>gi|119504228|ref|ZP_01626308.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119459736|gb|EAW40831.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 419

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 221/352 (62%), Positives = 280/352 (79%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G  RV+VD+K M+N R+D+NQL+P KY WAW+KY+  C NHWMP EV 
Sbjct: 68  IDIAPGLEELEMGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVN 127

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WK  +GL+DDER +I R+LG+F++++SLVANN+VLAIYR ++NPECRQYLLRQ
Sbjct: 128 MTADVATWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYLLRQ 187

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ AKA W+L  T +LS P+F TGT +
Sbjct: 188 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKATWSLGKTHSLSDPNFRTGTLE 247

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQE L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 248 TDQELLRNLIGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 307

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENP LWT EFQQ++  M+ E T LEIAYA +TMP+G +G+NA   E+Y+QFI 
Sbjct: 308 VINQIKLENPLLWTPEFQQEAIQMILEGTELEIAYARDTMPRGVLGMNAAMMEEYLQFIC 367

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR +Q+GL   F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 368 NRRLNQVGLPEQFPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 419


>gi|330815478|ref|YP_004359183.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           gladioli BSR3]
 gi|327367871|gb|AEA59227.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           gladioli BSR3]
          Length = 407

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 210/339 (61%), Positives = 266/339 (78%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           ++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 69  QERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 128

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 129 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y E+ SI  K  + + +  TL+ P+F TGT +ADQ+ L+ L VF 
Sbjct: 189 IVESLGLDEGEMFNAYHEITSIRDKDEFLIPFIHTLTDPAFVTGTPEADQKLLKSLIVFA 248

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 249 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 308

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FIANRRC QIGL+ L+
Sbjct: 309 TPEFRAEIRELFKHAVELEYRYAEDTMPRGVLGLNASMFKSYLRFIANRRCQQIGLDALY 368

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 369 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407


>gi|124268397|ref|YP_001022401.1| ribonucleotide-diphosphate reductase subunit beta [Methylibium
           petroleiphilum PM1]
 gi|124261172|gb|ABM96166.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum
           PM1]
          Length = 403

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 208/341 (60%), Positives = 260/341 (76%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           AG +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+A WK  
Sbjct: 63  AGTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWKDP 122

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           NGL++DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +
Sbjct: 123 NGLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 182

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           QYI+ SLGLDE E+FN Y EV SI  K  + + +   +  P+F TGT + D+  L+ L V
Sbjct: 183 QYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIGAIMDPNFHTGTLENDRTLLKSLIV 242

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP 
Sbjct: 243 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQ 302

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           LWT EF+ + + +  +A  LE  YA +TMP+G +GLNA   + Y+++IANRR  QIGLE 
Sbjct: 303 LWTAEFKAEIKALFMKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLEE 362

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 363 LFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 403


>gi|186477386|ref|YP_001858856.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           phymatum STM815]
 gi|184193845|gb|ACC71810.1| Ribonucleoside-diphosphate reductase [Burkholderia phymatum STM815]
          Length = 407

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 215/339 (63%), Positives = 265/339 (78%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYLS C NHWMP E+ M  D+ALWK  NG
Sbjct: 69  EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLSGCANHWMPQEINMSRDIALWKDPNG 128

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 129 LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI  K  + + +  TL+ P+F TGT +ADQ+ L+ L VF 
Sbjct: 189 IVESLGLDEGEIFNAYHEVQSIRDKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFA 248

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 249 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 308

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIG++PL+
Sbjct: 309 TPEFRAEIREIFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGIDPLY 368

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 369 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407


>gi|158341282|ref|YP_001522354.1| ribonucleotide-diphosphate reductase subunit beta [Acaryochloris
           marina MBIC11017]
 gi|158311523|gb|ABW33134.1| ribonucleoside-diphosphate reductase, beta subunit [Acaryochloris
           marina MBIC11017]
          Length = 384

 Score =  339 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 206/344 (59%), Positives = 264/344 (76%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P     +R+NV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M  D+ALW
Sbjct: 41  PETQPPRRINVADKRIINGQTDVNQLVPFKYQWAWDKYLAGCANHWMPQEINMSRDIALW 100

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K+ +GLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+
Sbjct: 101 KTTDGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHT 160

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI+ SLGLDEGE+FN YREV  I  K  + + + +TL+ P+F TGT + DQ+ L+ 
Sbjct: 161 HAYQYIVESLGLDEGEIFNAYREVDCIREKDEFLIPFVETLTDPTFETGTPENDQKLLKS 220

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  F  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID++N IK E
Sbjct: 221 LIAFSCLMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLVNAIKQE 280

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NPHLWT EF ++ R +   A  LE  YA +TMP+G +GLNA   + Y+++IANRR  QIG
Sbjct: 281 NPHLWTPEFCEEIRDLFKRAVELEYRYAEDTMPRGVLGLNASMFKSYLRYIANRRSQQIG 340

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L+P+F   ENPFPWMSE++DLKKE+NFFETRV EYQ G  L WD
Sbjct: 341 LDPIFASEENPFPWMSEMVDLKKERNFFETRVLEYQTGGALSWD 384


>gi|89902117|ref|YP_524588.1| ribonucleotide-diphosphate reductase subunit beta [Rhodoferax
           ferrireducens T118]
 gi|89346854|gb|ABD71057.1| Ribonucleoside-diphosphate reductase [Rhodoferax ferrireducens
           T118]
          Length = 400

 Score =  339 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 264/345 (76%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           + +    +RVN  DKR++N ++DVNQL+P KY WAWEKYLS+C NHWMP EV M  D+AL
Sbjct: 56  AAVSISPRRVNAADKRIINGKTDVNQLVPFKYKWAWEKYLSSCANHWMPQEVNMTRDIAL 115

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 116 WKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 175

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SLGLDE E+FN Y EV SI  K  + + + + +  P+F TGT +ADQ  L+
Sbjct: 176 THAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPAFKTGTHEADQTLLK 235

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GFAQIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+
Sbjct: 236 SLIVFACLMEGLFFYVGFAQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKL 295

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENP LWT EF+ + + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QI
Sbjct: 296 ENPQLWTSEFKAEIKALFEQAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQI 355

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GLE LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 356 GLETLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 400


>gi|325121074|gb|ADY80597.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 370

 Score =  339 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 281/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 20  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 79

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 80  MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 139

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W L+YTQ+L+ P+F TGT +
Sbjct: 140 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPE 199

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 200 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 259

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 260 MINQIKIENPHLWTAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 319

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 320 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 370


>gi|54297688|ref|YP_124057.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
           pneumophila str. Paris]
 gi|53751473|emb|CAH12891.1| hypothetical protein lpp1739 [Legionella pneumophila str. Paris]
          Length = 367

 Score =  339 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 225/349 (64%), Positives = 282/349 (80%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  ++ G  R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M  
Sbjct: 17  ATGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 76

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK   GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 77  DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 136

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L   +F TGT + DQ
Sbjct: 137 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 196

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+DL  FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 197 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 256

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EF+ +   ++ E   LE  YA +TMP G +G+NA   E+Y+ FIANRR
Sbjct: 257 QIKIENPHLWTPEFKNEIIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 316

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +QIGL   +   ENPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 317 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365


>gi|167825888|ref|ZP_02457359.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei 9]
 gi|167924622|ref|ZP_02511713.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei BCC215]
 gi|254180586|ref|ZP_04887184.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1655]
 gi|254190977|ref|ZP_04897483.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157938651|gb|EDO94321.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184211125|gb|EDU08168.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           pseudomallei 1655]
          Length = 372

 Score =  339 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 217/339 (64%), Positives = 269/339 (79%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 34  EARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 93

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 94  LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 153

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+FTTGT +ADQ+ L+ L VF 
Sbjct: 154 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLKSLIVFA 213

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 214 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 273

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIGL+PLF
Sbjct: 274 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 333

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 334 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372


>gi|330504346|ref|YP_004381215.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           mendocina NK-01]
 gi|328918632|gb|AEB59463.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           mendocina NK-01]
          Length = 416

 Score =  338 bits (867), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 278/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++    RV V DK+M+NAR+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 65  LDIQEGLDDLEGASARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 125 MNADIALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 184

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA+W L+YT+++S P F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPQFQTGTPE 244

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D++FL++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDRQFLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 304

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW  + + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 365 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416


>gi|134097869|ref|YP_001103530.1| ribonucleotide-diphosphate reductase subunit beta
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291007412|ref|ZP_06565385.1| ribonucleotide-diphosphate reductase subunit beta
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133910492|emb|CAM00605.1| ribonucleoside-diphosphate reductase, beta subunit
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 360

 Score =  338 bits (867), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 261/349 (74%), Positives = 300/349 (85%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           ++GL  I     RV+V +K M+N+R+DVNQLLPLKYGWAWEKYL+ CNNHWMPTEV MQ 
Sbjct: 12  SSGLGEIDRDGGRVDVAEKAMINSRADVNQLLPLKYGWAWEKYLAGCNNHWMPTEVSMQA 71

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWKS++GLTDDER+M+KRNLGFFA++ESLVANNIVLA+YRH++NPECRQYLLRQAFE
Sbjct: 72  DIALWKSRDGLTDDERMMLKRNLGFFATAESLVANNIVLAVYRHITNPECRQYLLRQAFE 131

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EAVH+HTFQYI  SLGLDEGELFNMYRE+PSI+ K  WAL+YTQ L +P F  GT +ADQ
Sbjct: 132 EAVHTHTFQYICESLGLDEGELFNMYREIPSISDKDAWALRYTQNLENPDFEIGTPEADQ 191

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            FL+DL  FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID IN
Sbjct: 192 AFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCIN 251

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EFQ++ RTML EA  LE+AY  +TMP+G +GLNA  CE+YM+FI NRR
Sbjct: 252 QIKIENPHLWTPEFQEEVRTMLTEACELEVAYGRDTMPRGILGLNAGLCEEYMRFITNRR 311

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C Q+GLEP+F  T NPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 312 CAQLGLEPVFPETANPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 360


>gi|187479453|ref|YP_787478.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella avium
           197N]
 gi|115424040|emb|CAJ50593.1| ribonucleoside-diphosphate reductase beta chain [Bordetella avium
           197N]
          Length = 394

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 209/345 (60%), Positives = 268/345 (77%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           + +    +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+AL
Sbjct: 50  ADLGNTAQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIAL 109

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WK+ NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 110 WKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 169

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI+ SL LDE E+FN Y EVPSI AK  + + +   ++ P+F TGT +ADQ  L+
Sbjct: 170 THAYQYIVESLDLDESEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLK 229

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN IK+
Sbjct: 230 SLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKL 289

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANRRC QI
Sbjct: 290 ENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQI 349

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           G+EPL+   ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 350 GIEPLYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 394


>gi|254784923|ref|YP_003072351.1| ribonucleotide-diphosphate reductase subunit beta [Teredinibacter
           turnerae T7901]
 gi|237687536|gb|ACR14800.1| ribonucleoside-diphosphate reductase [Teredinibacter turnerae
           T7901]
          Length = 453

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 218/351 (62%), Positives = 281/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G  R+ VDDKRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 103 LDVAPGLEELEMGAARIEVDDKRMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 162

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A+WKS+ GL+ DER ++ R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQ
Sbjct: 163 MTADVAIWKSEEGLSADERKIVMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQ 222

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W++ +TQ +S P F TGT +
Sbjct: 223 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSITHTQGISDPQFHTGTPE 282

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQE L++L  FYV+ EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 283 ADQELLRNLIGFYVITEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 342

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENPHLWT+ FQQ+ + M+ E T LEI YA +TMP+G +G+NA   E+Y+ FIA
Sbjct: 343 VINQIKLENPHLWTESFQQEVKQMVLEGTELEIGYARDTMPRGVLGMNAAIMEEYLHFIA 402

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL+  +   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L W
Sbjct: 403 NRRLAQLGLKEAYPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSW 453


>gi|330892405|gb|EGH25066.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 415

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 212/352 (60%), Positives = 275/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 64  LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
              D+ALWK+  GLTDDER ++ RNLGFF++++SLVA+N+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 KTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVAHNLVLAVYRLITNPECRQYILRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVE 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|241664219|ref|YP_002982579.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
           pickettii 12D]
 gi|309783064|ref|ZP_07677783.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp.
           5_7_47FAA]
 gi|240866246|gb|ACS63907.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D]
 gi|308918172|gb|EFP63850.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 402

 Score =  338 bits (866), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 210/338 (62%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGL
Sbjct: 65  RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 124

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 185 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 245 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 304

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QIGL+ LF 
Sbjct: 305 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDALFP 364

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402


>gi|163854887|ref|YP_001629185.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
           petrii DSM 12804]
 gi|163258615|emb|CAP40914.1| ribonucleoside-diphosphate reductase beta chain [Bordetella petrii]
          Length = 396

 Score =  338 bits (866), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 209/342 (61%), Positives = 268/342 (78%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            A   RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK+
Sbjct: 55  DAAAHRVKVADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKN 114

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H 
Sbjct: 115 PNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHA 174

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +QYI+ SL LDE E+FN Y EVPSI AK  + + + + ++ P+F TGT ++DQ+ L+ L 
Sbjct: 175 YQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIEAIADPTFHTGTPESDQKLLKSLI 234

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           VF  + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN IK+ENP
Sbjct: 235 VFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENP 294

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           HLWT EF+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANRRC QIG+E
Sbjct: 295 HLWTPEFREEIRGLFQKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIE 354

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PL+   ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 355 PLYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 396


>gi|307546480|ref|YP_003898959.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
           elongata DSM 2581]
 gi|307218504|emb|CBV43774.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
           elongata DSM 2581]
          Length = 415

 Score =  338 bits (866), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 219/352 (62%), Positives = 284/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G  R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL    NHWMP EV 
Sbjct: 64  LDVAAGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS +GLTDDER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ
Sbjct: 124 MNADIALWKSADGLTDDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY + SL +DEGE+FNMYRE+PS+ AK+ W+L++TQ+L+ P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCVESLAMDEGEVFNMYREIPSVAAKSAWSLKHTQSLARPDFHTGTPE 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQE L++L  FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D
Sbjct: 244 TDQELLRNLVAFYCVTEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVD 303

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT EFQ +   M+ E T LEIAYA ++MP+G +G+NA   E+Y+ FI 
Sbjct: 304 MINQIKIENPHLWTPEFQDECTQMILEGTELEIAYARDSMPRGVLGMNAAIMEEYLHFIC 363

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  F   +NPFPWMSE+IDL+KEKNFFETRVTEYQ G  L WD
Sbjct: 364 NRRLAQIGLKEQFPGAQNPFPWMSEIIDLRKEKNFFETRVTEYQVGGALSWD 415


>gi|17547523|ref|NP_520925.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
           solanacearum GMI1000]
 gi|17429827|emb|CAD16511.1| putative transmembrane ribonucleoside reductase (small chain)
           oxidoreductase protein [Ralstonia solanacearum GMI1000]
          Length = 400

 Score =  338 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 210/339 (61%), Positives = 260/339 (76%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 62  SRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 121

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H+H +QY
Sbjct: 122 LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQY 181

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF 
Sbjct: 182 IVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFA 241

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLW
Sbjct: 242 CIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLW 301

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QIGL+ LF
Sbjct: 302 TAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDALF 361

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              +NPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 362 PNEDNPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 400


>gi|256822964|ref|YP_003146927.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM
           16069]
 gi|256796503|gb|ACV27159.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM
           16069]
          Length = 421

 Score =  338 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 218/352 (61%), Positives = 281/352 (79%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G  R+ VDDK+M+N R+D+NQL+P KY WAW+KYL  C+NHWMP E+ 
Sbjct: 70  LDVAPGLEELEMGAARIEVDDKKMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEIN 129

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WK  NGLTDDER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQ
Sbjct: 130 MTKDVATWKDPNGLTDDERKIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQ 189

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY + SLG+DE E+FNMYREVPSI  KA W++++TQ +S+P+F TGT +
Sbjct: 190 AFEEAIHTHAYQYCVESLGMDEAEVFNMYREVPSIAKKAAWSIKHTQGISNPTFKTGTDE 249

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           ADQE L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D
Sbjct: 250 ADQELLRNLIGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVD 309

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT EF+Q+   M+ E T LEI YA +TMP+G +G+NA   E+Y+QFI 
Sbjct: 310 IINQIKLENPHLWTAEFKQEVLQMILEGTQLEIEYARDTMPRGVLGMNAGMMEEYLQFIC 369

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  Q+GL   FK   NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 370 NRRLAQLGLPEQFKNVSNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 421


>gi|15596352|ref|NP_249846.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           aeruginosa PAO1]
 gi|107100605|ref|ZP_01364523.1| hypothetical protein PaerPA_01001630 [Pseudomonas aeruginosa PACS2]
 gi|116049087|ref|YP_792111.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|152988648|ref|YP_001349579.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           aeruginosa PA7]
 gi|218892881|ref|YP_002441750.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           aeruginosa LESB58]
 gi|254239525|ref|ZP_04932847.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192]
 gi|296390475|ref|ZP_06879950.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           aeruginosa PAb1]
 gi|313106126|ref|ZP_07792381.1| NrdB, tyrosyl radical-harboring component of class Ia
           ribonucleotide reductase [Pseudomonas aeruginosa 39016]
 gi|9947077|gb|AAG04544.1|AE004545_7 NrdB, tyrosyl radical-harboring component of class Ia
           ribonucleotide reductase [Pseudomonas aeruginosa PAO1]
 gi|115584308|gb|ABJ10323.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126192903|gb|EAZ56966.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192]
 gi|150963806|gb|ABR85831.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa PA7]
 gi|187939552|gb|ACD38699.1| ribonucleoside reductase small chain [Pseudomonas aeruginosa]
 gi|218773109|emb|CAW28921.1| NrdB, tyrosyl radical-harboring component of class Ia
           ribonucleotide reductase [Pseudomonas aeruginosa LESB58]
 gi|310878883|gb|EFQ37477.1| NrdB, tyrosyl radical-harboring component of class Ia
           ribonucleotide reductase [Pseudomonas aeruginosa 39016]
          Length = 415

 Score =  338 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 215/352 (61%), Positives = 279/352 (79%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++    RV V DK+M+NAR+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 64  LDIQEGLDDLEGSAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKSK+GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MNADIALWKSKDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+  KA+W L+YT+++S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPMFQTGTPE 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D++FL++L  +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDRQFLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 303

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLW  + + ++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 364 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415


>gi|226940720|ref|YP_002795794.1| ribonucleotide-diphosphate reductase subunit beta [Laribacter
           hongkongensis HLHK9]
 gi|226715647|gb|ACO74785.1| Ribonucleoside-diphosphate reductase beta chain [Laribacter
           hongkongensis HLHK9]
          Length = 357

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 214/338 (63%), Positives = 262/338 (77%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
            RVN  DKR++N  +DVNQL+P KY WAW+KYL+ C NHWMP EV MQ D+ LWK  NGL
Sbjct: 20  GRVNAVDKRIINGDTDVNQLVPFKYHWAWDKYLATCANHWMPQEVNMQRDIELWKRPNGL 79

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           TDDER ++ RNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 80  TDDERRIVIRNLGFFTTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 139

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDEGE+FN Y E+ SI AK  + + +  TL  P+F TGT ++DQ  L+ L VF  
Sbjct: 140 VESLGLDEGEVFNAYHEIASIRAKDEFLIPFIDTLCDPAFKTGTPESDQLLLKSLIVFAC 199

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK ENPHLWT
Sbjct: 200 IMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINSIKQENPHLWT 259

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EFQ++   +  +A  LE AYA +TMP+G +GLNA   ++Y+ FIANRR  QIGLEPLF 
Sbjct: 260 VEFQEELYGLFRKAIDLEYAYAEDTMPRGVLGLNAAMFKEYLDFIANRRMQQIGLEPLFT 319

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           + +NPFPWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 320 HVDNPFPWMSEMIDLKKEKNFFETRVTEYQSGGALDWD 357


>gi|299065648|emb|CBJ36820.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Ralstonia solanacearum CMR15]
          Length = 398

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 210/339 (61%), Positives = 260/339 (76%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 60  SRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 119

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H+H +QY
Sbjct: 120 LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQY 179

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF 
Sbjct: 180 IVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFA 239

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLW
Sbjct: 240 CIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLW 299

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QIGL+ LF
Sbjct: 300 TAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDALF 359

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              +NPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 360 PNEDNPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 398


>gi|313200886|ref|YP_004039544.1| ribonucleoside-diphosphate reductase [Methylovorus sp. MP688]
 gi|312440202|gb|ADQ84308.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. MP688]
          Length = 381

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 203/340 (59%), Positives = 262/340 (77%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
              RV   DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M  D+A WK  +
Sbjct: 42  ATGRVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDSS 101

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT+DERL++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +Q
Sbjct: 102 ALTEDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 161

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDE E+FN Y+EV SI  K ++ + +  TL+ P F TGT  ADQ+ L+ L VF
Sbjct: 162 YIVESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIVF 221

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K+ENPHL
Sbjct: 222 ACIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDLINTLKLENPHL 281

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT EF+++ + ++ +A  LE  YA +TMP+G +GLNA   ++Y++FIANRR  QIG++ L
Sbjct: 282 WTPEFREEIKRLMQQAVELEYRYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGIDAL 341

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +    NPFPWMSE++DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 342 YPGASNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 381


>gi|167564160|ref|ZP_02357076.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           oklahomensis EO147]
          Length = 369

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 215/339 (63%), Positives = 267/339 (78%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 31  EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 90

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 91  LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 150

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ L VF 
Sbjct: 151 IVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFA 210

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 211 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 270

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIGL+PLF
Sbjct: 271 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 330

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 331 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 369


>gi|148359319|ref|YP_001250526.1| ribonucleoside-diphosphate reductase subunit beta [Legionella
           pneumophila str. Corby]
 gi|296107366|ref|YP_003619066.1| ribonucleoside-diphosphate reductase beta chain [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148281092|gb|ABQ55180.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
           pneumophila str. Corby]
 gi|295649267|gb|ADG25114.1| ribonucleoside-diphosphate reductase beta chain [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307610475|emb|CBX00047.1| hypothetical protein LPW_18021 [Legionella pneumophila 130b]
          Length = 367

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 225/349 (64%), Positives = 282/349 (80%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  ++ G  R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M  
Sbjct: 17  ATGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 76

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK   GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 77  DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 136

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L   +F TGT + DQ
Sbjct: 137 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 196

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+DL  FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 197 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 256

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EF+ +   ++ E   LE  YA +TMP G +G+NA   E+Y+ FIANRR
Sbjct: 257 QIKIENPHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 316

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +QIGL   +   ENPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 317 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365


>gi|75677068|ref|YP_319489.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter
           winogradskyi Nb-255]
 gi|74421938|gb|ABA06137.1| ribonucleotide reductase [Nitrobacter winogradskyi Nb-255]
          Length = 391

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 268/351 (76%), Positives = 296/351 (84%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            +  GL  I  G  RV VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M
Sbjct: 41  TDAAGLGDIDRGGARVRVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSM 100

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 101 QADIALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 160

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L  P F TGT +A
Sbjct: 161 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEA 220

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYVVFEGMWFYTGF QILSLGR NKMVGIAEQYQYI+RDES+HLNFGID+
Sbjct: 221 DQAFLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDI 280

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIKIENPHLW+K FQ++ R ML  A  LE AY  +TMP+GF+GLNA  CE YM  IAN
Sbjct: 281 INQIKIENPHLWSKPFQEEVRAMLKNAADLEAAYGRDTMPRGFLGLNATLCETYMHVIAN 340

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC Q+GL P+F   +NPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 341 RRCAQLGLAPVFPDADNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 391


>gi|329893650|ref|ZP_08269784.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
           proteobacterium IMCC3088]
 gi|328923577|gb|EGG30889.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
           proteobacterium IMCC3088]
          Length = 432

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 277/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M    GL  ++ G  RV+VD+K M+N R+D+NQL+P KY WAW+KY+  C NHWMP E+ 
Sbjct: 81  MDLAPGLEELELGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEIN 140

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+A WKS + L+DDER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQ
Sbjct: 141 MTADVATWKSADVLSDDERRIVMRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQ 200

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W+L +T +LS P+F TGT +
Sbjct: 201 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVAKKATWSLSHTHSLSDPNFKTGTTE 260

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 261 NDQTLLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 320

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENPHLWT++FQ++   ML E T +EI YA +TMP+G +G+NA   E+Y+QFI 
Sbjct: 321 VINQIKLENPHLWTEDFQKEVIQMLLEGTQIEIEYARDTMPRGVLGMNAAMMEEYLQFIC 380

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  Q+GL   F   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 381 NRRLAQLGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 432


>gi|253998799|ref|YP_003050862.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4]
 gi|253985478|gb|ACT50335.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4]
          Length = 383

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 203/339 (59%), Positives = 262/339 (77%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
             RV   DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M  D+A WK  + 
Sbjct: 45  TGRVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDSSA 104

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DERL++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QY
Sbjct: 105 LTEDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 164

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDE E+FN Y+EV SI  K ++ + +  TL+ P F TGT  ADQ+ L+ L VF 
Sbjct: 165 IVESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIVFA 224

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K+ENPHLW
Sbjct: 225 CIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDLINTLKLENPHLW 284

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+++ + ++ +A  LE  YA +TMP+G +GLNA   ++Y++FIANRR  QIG++ L+
Sbjct: 285 TPEFREEIKRLMQQAVELEYRYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGIDALY 344

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
               NPFPWMSE++DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 345 PGASNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 383


>gi|160871658|ref|ZP_02061790.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella
           grylli]
 gi|159120457|gb|EDP45795.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella
           grylli]
          Length = 362

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 216/348 (62%), Positives = 277/348 (79%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TGL  ++ G  RV+VDDK+++N R+D+NQL+P KY WAWEKYL+AC NHWMP E+ M  D
Sbjct: 14  TGLETLEVGAARVHVDDKKIINCRADLNQLVPFKYKWAWEKYLAACANHWMPQEINMSAD 73

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +ALW+   GL +DERL+++R+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 74  IALWRDAKGLREDERLIVERSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 133

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QY+I SLG+DE  +FNMYRE+P++  K  WAL +TQ+L+ P+F TGT + DQ 
Sbjct: 134 ALHTHAYQYVIESLGMDEARIFNMYRELPTVAKKTEWALPFTQSLADPNFRTGTPETDQR 193

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+DL  FYVVFEG++FY GF+QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQ
Sbjct: 194 LLRDLIAFYVVFEGIFFYVGFSQILSMGRQNKMTGTAEQFQYILRDESMHLNFGIDVINQ 253

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           IK+ENPHLWT EF++    ++ E   LE  YA +T+P+G +GLNA     Y++FI NRR 
Sbjct: 254 IKLENPHLWTPEFKRYVINLIKEGVDLEYQYALDTLPRGILGLNANLMWDYLRFIGNRRF 313

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL   +    NP PWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 314 TQIGLAEQYPGVSNPLPWMSEIIDLKKEKNFFETRVTEYQTGGSLNWD 361


>gi|167574685|ref|ZP_02367559.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           oklahomensis C6786]
          Length = 369

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 215/339 (63%), Positives = 266/339 (78%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 31  EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 90

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 91  LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 150

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT  ADQ+ L+ L VF 
Sbjct: 151 IVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLVADQKLLKSLIVFA 210

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 211 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 270

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIGL+PLF
Sbjct: 271 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 330

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 331 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 369


>gi|52842002|ref|YP_095801.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629113|gb|AAU27854.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 381

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 225/349 (64%), Positives = 282/349 (80%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  ++ G  R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M  
Sbjct: 31  ATGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 90

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK   GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 91  DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 150

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L   +F TGT + DQ
Sbjct: 151 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 210

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+DL  FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 211 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 270

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EF+ +   ++ E   LE  YA +TMP G +G+NA   E+Y+ FIANRR
Sbjct: 271 QIKIENPHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 330

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +QIGL   +   ENPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 331 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 379


>gi|90425007|ref|YP_533377.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas
           palustris BisB18]
 gi|90107021|gb|ABD89058.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris
           BisB18]
          Length = 386

 Score =  337 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 265/350 (75%), Positives = 297/350 (84%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           + TGL  I     RV++DDK M+N R+DVNQLLPLK+ WAWEKYL+ACNNHWMPTEV MQ
Sbjct: 37  DATGLGAIDRSGARVSIDDKAMINCRADVNQLLPLKHRWAWEKYLAACNNHWMPTEVSMQ 96

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALW S++GLT+DER  IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF
Sbjct: 97  ADIALWTSRDGLTEDERRAIKRNLGFFATSESLVANNIVLAIYRHLTNPECRQYLLRQAF 156

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L  P+F TGT +AD
Sbjct: 157 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQHLDDPTFATGTVEAD 216

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           + FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI
Sbjct: 217 RAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 276

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIKIENP LWT  FQ++ R ML EA  LE AY+ +TMP+GF+GLNA  CEQYM FI NR
Sbjct: 277 NQIKIENPKLWTAGFQEELRGMLQEAAELEAAYSRDTMPRGFLGLNAALCEQYMHFITNR 336

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RC Q+GL P+F   ENPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 337 RCAQLGLAPIFAEVENPFPWMSETMDLKKEKNFFETRVIEYQNGGALTWD 386


>gi|254496936|ref|ZP_05109775.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
           drancourtii LLAP12]
 gi|254353845|gb|EET12541.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
           drancourtii LLAP12]
          Length = 369

 Score =  337 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 227/349 (65%), Positives = 282/349 (80%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TG   I+ G  R++VDDKR++N R+D+NQL+P KY WAW+KYLSAC NHWMP E+ M  
Sbjct: 16  ATGYESIEMGAARIHVDDKRIINCRADLNQLVPFKYTWAWDKYLSACANHWMPNEISMSA 75

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLTDDERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 76  DVALWKDPNGLTDDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 135

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QY+I SLGLDE E+FNMYRE+PS+  KA WAL YTQ+L   SF TGT + DQ
Sbjct: 136 EALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLGDESFHTGTIENDQ 195

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+DL  FYV+FEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 196 RLLRDLIAFYVIFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 255

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLWT EF+++   ++ +   +E  YA +TMP G +G+NA   E+Y+ FIANRR
Sbjct: 256 QIKIENPHLWTPEFKEEIIQLIKDGVAMEYQYAKDTMPHGILGMNAEMFEEYLHFIANRR 315

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +QIGL   +   ENPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 316 LNQIGLPEQYPGAENPFPWMSEMMDLKKEKNFFETRVIEYQAGGTLSWD 364


>gi|270156779|ref|ZP_06185436.1| ribonucleotide-diphosphate reductase beta subunit [Legionella
           longbeachae D-4968]
 gi|289164772|ref|YP_003454910.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
           longbeachae NSW150]
 gi|269988804|gb|EEZ95058.1| ribonucleotide-diphosphate reductase beta subunit [Legionella
           longbeachae D-4968]
 gi|288857945|emb|CBJ11805.1| putative ribonucleoside-diphosphate reductase, beta subunit
           [Legionella longbeachae NSW150]
          Length = 366

 Score =  337 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 223/352 (63%), Positives = 282/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +   TG   ++ G  R++VDDKR++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ 
Sbjct: 13  LTGATGYESLEMGAARIHVDDKRIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEIS 72

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGLT+ ERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQ
Sbjct: 73  MSADVALWKDPNGLTEAERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQ 132

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY+I SLGLDE E+FNMYRE+PS+  KA WAL YTQ+L+  +F TGT +
Sbjct: 133 AFEEALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLADETFHTGTVE 192

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L+DL  FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGID
Sbjct: 193 NDQRLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGID 252

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIKIENPHLWT EF+++   ++ +   LE  YA +TMP+G +G+NA   E+Y+ FIA
Sbjct: 253 VINQIKIENPHLWTSEFKEEIIQLIRQGVDLEYQYAKDTMPQGILGMNAEMFEEYLHFIA 312

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGL   +    NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 313 NRRLTQIGLAEQYPGAVNPFPWMSEMMDLKKEKNFFETRVIEYQAGGTLSWD 364


>gi|224825450|ref|ZP_03698555.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002]
 gi|224602371|gb|EEG08549.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002]
          Length = 360

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 204/340 (60%), Positives = 257/340 (75%), Gaps = 1/340 (0%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           G  RVN  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV MQ D+  WK+  
Sbjct: 22  GTGRVNASDKRVINGQTDVNQLVPFKYKWAWEKYLAQCANHWMPQEVNMQRDIEQWKT-G 80

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L++DE  ++KRNLGFF +++SL ANNIVL  YR ++ PECRQ+LLRQAF+EA+H+H +Q
Sbjct: 81  QLSEDEMRLVKRNLGFFVTADSLAANNIVLGTYRQITAPECRQFLLRQAFDEAIHTHAYQ 140

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDEGE+FN Y E+ SI  K  + + +  TL +P F TGT + DQ+ L+ L VF
Sbjct: 141 YIVESLGLDEGEVFNAYHEIKSIRDKDEFLIPFIDTLCNPEFKTGTTETDQQLLKSLIVF 200

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K ENP L
Sbjct: 201 ACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTVKQENPQL 260

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT+EF+ +   +   A  LE AYA +TMP+G +GLNA   ++Y++FIANRR  QIGLEP+
Sbjct: 261 WTEEFKAEITGLFKHAVELEYAYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGLEPM 320

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F    NPFPWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 321 FPGVTNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 360


>gi|212212091|ref|YP_002303027.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
           burnetii CbuG_Q212]
 gi|212010501|gb|ACJ17882.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
           CbuG_Q212]
          Length = 401

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 222/349 (63%), Positives = 279/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  ++ G  R+ VDDK+++N  +D+NQL+P KY WAW+KYLS C NHWMP E+ M  
Sbjct: 52  ATGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTA 111

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFE
Sbjct: 112 DIALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFE 171

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+
Sbjct: 172 EALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDR 231

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+DL  FYVVFEG++FY GF QIL++GR  KM G +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 232 RLLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVIN 291

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW K FQ++   M+ E   LE  YA +TMP+G +GLNA   + Y+Q+IANRR
Sbjct: 292 QIKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRR 351

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL   F   +N FPWMSE++DLKKEKNFFETRV EYQ G  LKWD
Sbjct: 352 CAQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400


>gi|29654845|ref|NP_820537.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
           burnetii RSA 493]
 gi|154705923|ref|YP_001423853.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
           burnetii Dugway 5J108-111]
 gi|161831080|ref|YP_001597389.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
           burnetii RSA 331]
 gi|29542113|gb|AAO91051.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
           RSA 493]
 gi|154355209|gb|ABS76671.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
           Dugway 5J108-111]
 gi|161762947|gb|ABX78589.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
           burnetii RSA 331]
          Length = 401

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 222/349 (63%), Positives = 279/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  ++ G  R+ VDDK+++N  +D+NQL+P KY WAW+KYLS C NHWMP E+ M  
Sbjct: 52  ATGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTA 111

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFE
Sbjct: 112 DIALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFE 171

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+
Sbjct: 172 EALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDR 231

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+DL  FYVVFEG++FY GF QIL++GR  KM G +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 232 RLLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVIN 291

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW K FQ++   M+ E   LE  YA +TMP+G +GLNA   + Y+Q+IANRR
Sbjct: 292 QIKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRR 351

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL   F   +N FPWMSE++DLKKEKNFFETRV EYQ G  LKWD
Sbjct: 352 CAQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400


>gi|297563527|ref|YP_003682501.1| ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847975|gb|ADH69995.1| Ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 360

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 266/349 (76%), Positives = 301/349 (86%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            +GL  I+   +RVNVDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ 
Sbjct: 12  TSGLGEIERDAERVNVDDKAMINARADVNQLLPLKYTWAWEKYLAGCNNHWMPTEVAMQA 71

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWKS++GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR L+NPECRQYLLRQAFE
Sbjct: 72  DIALWKSRDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLTNPECRQYLLRQAFE 131

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EAVH+HTFQYI  SLGLDEGELFNMYREVPSITAK  WAL+YTQ L +P F TGT +ADQ
Sbjct: 132 EAVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALKYTQNLENPEFRTGTPEADQ 191

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            FL+DL  FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVIN
Sbjct: 192 AFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVIN 251

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW++EFQ + R ML EA  LE+AY  ETMP+G +GLNA  CE+YM FI +RR
Sbjct: 252 QIKIENPHLWSEEFQAEVRQMLTEACELEVAYGRETMPRGVLGLNAELCEKYMHFITDRR 311

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL P+F  TENPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 312 AEQIGLAPIFGETENPFPWMSEMMDLQKEKNFFETRVIEYQTGGGLDWD 360


>gi|119478322|ref|ZP_01618353.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
           proteobacterium HTCC2143]
 gi|119448662|gb|EAW29907.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
           proteobacterium HTCC2143]
          Length = 422

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 213/352 (60%), Positives = 282/352 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G  R+ V+DK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 71  LDVTAGLEELELGAARLTVEDKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 130

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK  NGL+DDER ++ R+LG+F++++SLVANN++LAIYRH++NPECRQYLLRQ
Sbjct: 131 MTADVALWKDPNGLSDDERRIVMRSLGYFSTADSLVANNLILAIYRHITNPECRQYLLRQ 190

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY + SL +DEGE+FNMYRE+PSI  KA W+L++T +LS P+F TGT +
Sbjct: 191 AFEEAIHTHAYQYCVESLAMDEGEVFNMYRELPSIAKKAAWSLRHTHSLSDPNFKTGTPE 250

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQE L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 251 TDQELLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 310

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENP LW+++FQQ+   M+ E T LEI YA ++MP+G +G+NA   E+Y+QFI+
Sbjct: 311 VINQIKLENPQLWSEKFQQEIIQMILEGTQLEIEYARDSMPRGVLGMNAAMMEEYLQFIS 370

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR +Q+GL   ++  +NPFPWMSE++DL+KEKNFFETRV EYQ G  L W+
Sbjct: 371 NRRLNQLGLPEQYQGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALNWE 422


>gi|153208286|ref|ZP_01946665.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165919229|ref|ZP_02219315.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
           burnetii RSA 334]
 gi|212219268|ref|YP_002306055.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
           burnetii CbuK_Q154]
 gi|120576070|gb|EAX32694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165917090|gb|EDR35694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
           burnetii RSA 334]
 gi|212013530|gb|ACJ20910.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
           CbuK_Q154]
          Length = 401

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 222/349 (63%), Positives = 279/349 (79%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  ++ G  R+ VDDK+++N  +D+NQL+P KY WAW+KYLS C NHWMP E+ M  
Sbjct: 52  ATGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTA 111

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+ALWK  NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFE
Sbjct: 112 DIALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFE 171

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           EA+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+
Sbjct: 172 EALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDR 231

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L+DL  FYVVFEG++FY GF QIL++GR  KM G +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 232 RLLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVIN 291

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW K FQ++   M+ E   LE  YA +TMP+G +GLNA   + Y+Q+IANRR
Sbjct: 292 QIKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRR 351

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           C QIGL   F   +N FPWMSE++DLKKEKNFFETRV EYQ G  LKWD
Sbjct: 352 CAQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400


>gi|187930114|ref|YP_001900601.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
           pickettii 12J]
 gi|187727004|gb|ACD28169.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12J]
          Length = 402

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 209/338 (61%), Positives = 259/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+A WK  NGL
Sbjct: 65  RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIATWKDPNGL 124

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 185 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 245 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 304

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QIGL+ LF 
Sbjct: 305 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDALFP 364

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402


>gi|300690381|ref|YP_003751376.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Ralstonia solanacearum PSI07]
 gi|299077441|emb|CBJ50067.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Ralstonia solanacearum PSI07]
          Length = 402

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 210/338 (62%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGL
Sbjct: 65  RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 124

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 185 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 245 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 304

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QIGL+ LF 
Sbjct: 305 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDALFP 364

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402


>gi|326315613|ref|YP_004233285.1| ribonucleoside-diphosphate reductase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372449|gb|ADX44718.1| Ribonucleoside-diphosphate reductase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 387

 Score =  335 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 206/339 (60%), Positives = 260/339 (76%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RVN  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 49  HRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 108

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 109 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 168

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDE E+FN Y EV SI  K  + + + + +  P F TGT + DQ  L+ L VF 
Sbjct: 169 IVESLGLDESEIFNAYNEVDSIRNKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIVFA 228

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLW
Sbjct: 229 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLW 288

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+++ + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF
Sbjct: 289 TAEFKEEIKGLFMKAVELEYQYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALF 348

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 349 PNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387


>gi|121595925|ref|YP_987821.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax sp.
           JS42]
 gi|222112113|ref|YP_002554377.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax
           ebreus TPSY]
 gi|120608005|gb|ABM43745.1| Ribonucleoside-diphosphate reductase [Acidovorax sp. JS42]
 gi|221731557|gb|ACM34377.1| Ribonucleoside-diphosphate reductase [Acidovorax ebreus TPSY]
          Length = 396

 Score =  335 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 207/339 (61%), Positives = 262/339 (77%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RV+  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 58  HRRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 117

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 118 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 177

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI  K  + + + + +  P FTTGT ++DQ  L+ L VF 
Sbjct: 178 IVESLGLDEGEIFNAYNEVQSIRDKDEFLIPFIEAIMDPRFTTGTPESDQTLLKSLIVFA 237

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLW
Sbjct: 238 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLW 297

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF
Sbjct: 298 TAEFKDEIKALFIKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALF 357

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 358 PNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 396


>gi|291615085|ref|YP_003525242.1| ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus
           ES-1]
 gi|291585197|gb|ADE12855.1| Ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus
           ES-1]
          Length = 382

 Score =  335 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 211/342 (61%), Positives = 268/342 (78%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
                R+ V+DKR++N+ +DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK+
Sbjct: 41  STSTGRIRVEDKRIINSSADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSADIALWKN 100

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            NGLTDDER ++KRNLGFF +++SL ANNI L  YRH++NPECRQ+LLRQAFEEA+H+H 
Sbjct: 101 PNGLTDDERRLVKRNLGFFTTADSLAANNIALGTYRHITNPECRQFLLRQAFEEAIHTHA 160

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +QYI+ SLGLDEGE+FNMY EV SI  K  + L +   L++P F TGT + DQ+ L+ L 
Sbjct: 161 YQYIVESLGLDEGEVFNMYHEVQSIRDKDEFLLPFIDVLTNPDFKTGTPENDQKLLRSLI 220

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+HLNFG+DVINQIK+ENP
Sbjct: 221 VFACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHLNFGVDVINQIKLENP 280

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           HLWT  F+++ R ++ +   LE  YA +TMP+G +GLNA   ++Y++FIANRRC QIG++
Sbjct: 281 HLWTPAFREEVRGLIQKGVELEYRYAEDTMPRGVLGLNAGMFKEYLRFIANRRCQQIGVD 340

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            L++   NPFPWM+E+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 341 MLYQGATNPFPWMAEMIDLKKEKNFFETRVTEYQTGGALSWD 382


>gi|126640804|ref|YP_001083788.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii ATCC 17978]
 gi|322506921|gb|ADX02375.1| nrdB [Acinetobacter baumannii 1656-2]
 gi|323516789|gb|ADX91170.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 361

 Score =  335 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 222/351 (63%), Positives = 281/351 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL  ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 11  LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 70

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 71  MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 130

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+  KA W L+YTQ+LS P+F TGT +
Sbjct: 131 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPE 190

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 191 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 250

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT EFQQ+   M+ E T+LEI YA +TMP+G +G+NA   E+Y++FI 
Sbjct: 251 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 310

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NRR  Q+GL   F    NPF WMSE++DL+KEKNFFETRVT+YQ G  L W
Sbjct: 311 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 361


>gi|254429337|ref|ZP_05043044.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp.
           DG881]
 gi|196195506|gb|EDX90465.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp.
           DG881]
          Length = 355

 Score =  335 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 219/352 (62%), Positives = 278/352 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M    G++ ++    RV VDDKRM+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 4   MDIEEGVAELEGASGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 63

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  DLALWK  +GLTDDER ++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ
Sbjct: 64  MNADLALWKKADGLTDDERRIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQ 123

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +FEEA+H+H +QY I SLG+DEGE+FNMY+E+PS+  KA W +QYT+ LS P FTTGT +
Sbjct: 124 SFEEAIHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTVE 183

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+  L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGID
Sbjct: 184 TDKALLENLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGID 243

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           VINQIK+ENPHLW  + + K+  M+ E   LEI YA +TMP+G +G+NA   E+Y+QFIA
Sbjct: 244 VINQIKLENPHLWDAQMRDKATQMILEGAELEIQYARDTMPRGVLGMNAAMMEEYLQFIA 303

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  Q+GL   FK   NPFPWMSE++DL+KEKNFFETRVTEYQ G  L W+
Sbjct: 304 NRRLAQLGLPEQFKGVNNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWE 355


>gi|332286774|ref|YP_004418685.1| ribonucleoside-diphosphate reductase beta chain [Pusillimonas sp.
           T7-7]
 gi|330430727|gb|AEC22061.1| ribonucleoside-diphosphate reductase beta chain [Pusillimonas sp.
           T7-7]
          Length = 387

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 209/340 (61%), Positives = 263/340 (77%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           G  RV   DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D++LWK+ N
Sbjct: 48  GSGRVRAADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDISLWKNPN 107

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +Q
Sbjct: 108 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 167

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SL LDE E+FN Y EVPSI AK  + + +   ++ P F TGT +ADQ  L+ L VF
Sbjct: 168 YIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPHFQTGTPEADQTLLKSLIVF 227

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN IK+ENPHL
Sbjct: 228 ACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPHL 287

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT EF+++ R +  +A  LE AYA +TMP+G +GLNA   + Y++FIANRRC QIGLEPL
Sbjct: 288 WTAEFREELRELFKKAVDLEYAYAEDTMPRGVLGLNASMFKSYLRFIANRRCQQIGLEPL 347

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F   ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 348 FGQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGALSWE 387


>gi|85714830|ref|ZP_01045816.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A]
 gi|85698316|gb|EAQ36187.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A]
          Length = 389

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 270/351 (76%), Positives = 297/351 (84%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A+ TGL  I  G  RV VDDKRM+NAR+DVNQLLP KY WAWEKYLS CNNHWMPTEV M
Sbjct: 39  ADATGLGDIDRGAARVRVDDKRMINARADVNQLLPFKYRWAWEKYLSGCNNHWMPTEVSM 98

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKS++GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 99  QADIALWKSRDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 158

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L  P F TGT +A
Sbjct: 159 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEA 218

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYVVFEGMWFYTGF QILSLGR NKM+GIAEQYQYI+RDES+HLNFGIDV
Sbjct: 219 DQAFLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMIGIAEQYQYILRDESIHLNFGIDV 278

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIKIENPHLWTK FQ + R ML  A  LE AY  +TMP+GF+GLNA  CE YM  IAN
Sbjct: 279 INQIKIENPHLWTKTFQDEVRAMLKNAAELEAAYGRDTMPRGFLGLNAALCETYMHVIAN 338

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC Q+GL P+F  T+NPFPWMSE +DLKKEKNFFETRV EYQ G  L WD
Sbjct: 339 RRCAQLGLAPVFAETDNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 389


>gi|121606275|ref|YP_983604.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas
           naphthalenivorans CJ2]
 gi|120595244|gb|ABM38683.1| Ribonucleoside-diphosphate reductase [Polaromonas naphthalenivorans
           CJ2]
          Length = 387

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 209/344 (60%), Positives = 260/344 (75%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
            I A  KRV   DKR++N ++DVNQL+P KY WAWEKYL++C NHWMP EV M  D+ALW
Sbjct: 44  EIPAKAKRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLASCANHWMPQEVNMTRDIALW 103

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K  NGL+DDER ++ RNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 104 KDPNGLSDDERRLVMRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 163

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H +QYI  SLGLDEGE+FN Y EV SI  K  + + + + +S P F TGT ++DQ  L+ 
Sbjct: 164 HAYQYITESLGLDEGEIFNAYNEVQSIKDKDQFLIPFIEAISDPGFKTGTLESDQTLLKS 223

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+E
Sbjct: 224 LIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLE 283

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP LWT EF+ +   +  +A  LE  YA +TMP+G +GLNA   + Y+++IANRR  QIG
Sbjct: 284 NPQLWTAEFKAEINALFMKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIG 343

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           LE LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 344 LETLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387


>gi|149927167|ref|ZP_01915424.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp.
           MED105]
 gi|149824106|gb|EDM83327.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp.
           MED105]
          Length = 399

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 204/341 (59%), Positives = 257/341 (75%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   RVN  DKR++N  +DVNQL+P KY WAWEKYLS C NHWMP E+ M  D+ALWK  
Sbjct: 59  AKAGRVNAADKRVINGTTDVNQLVPFKYKWAWEKYLSQCANHWMPQEINMDRDIALWKDP 118

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           NGLT+DERL++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAF+EA+H+H +
Sbjct: 119 NGLTEDERLIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFDEAIHTHAY 178

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           QYI+ SLG+ E E FN Y E+  I AK ++ L +   L+ PSF TGT +ADQ  L+ L  
Sbjct: 179 QYIVESLGIPEAETFNAYNEISCIKAKDDFLLPFIDVLTDPSFKTGTLEADQTLLKSLIA 238

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  + EGM+FY GF QIL+LGR NKM+G AEQ+QYI+RDES H  FGID+IN +K+ENPH
Sbjct: 239 FACIMEGMFFYVGFVQILALGRQNKMIGAAEQFQYILRDESAHCTFGIDLINTVKLENPH 298

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           LWT EF+++ + M  +A  LE AYA +TMP+G +GLN+    +YM+FI NRR +QIGL  
Sbjct: 299 LWTPEFKEEIKAMFRKAVELEHAYAVDTMPRGVLGLNSAQFMEYMKFICNRRSNQIGLGT 358

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L++   NPFPWMSE++DLKKE NFFE RVTEYQ G  L WD
Sbjct: 359 LYEGATNPFPWMSEMMDLKKETNFFERRVTEYQTGGALSWD 399


>gi|194290770|ref|YP_002006677.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224605|emb|CAQ70616.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Cupriavidus taiwanensis LMG 19424]
          Length = 396

 Score =  335 bits (858), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 211/338 (62%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVN  DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGL
Sbjct: 59  RRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 118

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER +IKRNLGFF +++SL ANNIVL  YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 119 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 178

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 179 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 238

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 239 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 298

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ +   +  +A  LE  YA +TMP+G +GLNAP  + Y++FI NRRC QIGL+ LF 
Sbjct: 299 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQIGLDQLFP 358

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 359 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 396


>gi|329902475|ref|ZP_08273120.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548767|gb|EGF33404.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 416

 Score =  335 bits (858), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 212/345 (61%), Positives = 263/345 (76%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
            P     +R+N  DKR++N  +DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ L
Sbjct: 72  EPKADPARRMNAADKRIINGNTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIEL 131

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           WKS NGLTDDER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H
Sbjct: 132 WKSPNGLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 191

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +H +QYI  SLGLDE E+FN Y EV SI  K  + + +   L+ P FTTGT   DQ+ L+
Sbjct: 192 THAYQYITESLGLDEAEIFNAYHEVKSIRDKDEFLIPFIDALTDPLFTTGTTINDQKLLK 251

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L VF  + EG++FY GFAQIL+LGR NKMVG AEQYQYI+RDES+H NFGID++N IK+
Sbjct: 252 SLIVFSCLMEGLFFYVGFAQILALGRQNKMVGAAEQYQYILRDESMHCNFGIDLVNTIKM 311

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENPHLWT EF+ + + +   A  LE  YA +TMP+G +GLNAP  + Y++FIANRR  QI
Sbjct: 312 ENPHLWTPEFRDEIKALFLTAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQI 371

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           GLEP+F+  ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 372 GLEPMFENEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416


>gi|53720599|ref|YP_109585.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           pseudomallei K96243]
 gi|53726102|ref|YP_104055.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           mallei ATCC 23344]
 gi|52211013|emb|CAH37001.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
           pseudomallei K96243]
 gi|52429525|gb|AAU50118.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
           mallei ATCC 23344]
          Length = 350

 Score =  334 bits (857), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 217/339 (64%), Positives = 269/339 (79%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 12  EARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 71

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 72  LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 131

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+FTTGT +ADQ+ L+ L VF 
Sbjct: 132 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLKSLIVFA 191

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 192 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 251

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIGL+PLF
Sbjct: 252 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 311

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 312 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 350


>gi|167580513|ref|ZP_02373387.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           thailandensis TXDOH]
 gi|167618621|ref|ZP_02387252.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           thailandensis Bt4]
 gi|257137870|ref|ZP_05586132.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           thailandensis E264]
          Length = 350

 Score =  334 bits (857), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 216/339 (63%), Positives = 268/339 (79%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 12  EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 71

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 72  LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 131

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EVPSI AK  + + +  TL+ P+F TGT +ADQ+ L+ L VF 
Sbjct: 132 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFA 191

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 192 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 251

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + R +   A  LE  YA +TMP+G +GLNA   + Y++FI+NRRC QIGL+PLF
Sbjct: 252 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 311

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 312 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 350


>gi|319791701|ref|YP_004153341.1| ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS]
 gi|315594164|gb|ADU35230.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS]
          Length = 411

 Score =  334 bits (857), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 206/338 (60%), Positives = 256/338 (75%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV   DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGL
Sbjct: 74  QRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 133

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 134 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 193

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDE E+FN Y EV SI  K  + L +   +S P F TGT + DQ  L+ L VF  
Sbjct: 194 VESLGLDESEIFNAYNEVQSIREKDQFLLPFIDAISDPHFKTGTHETDQTLLKSLIVFAC 253

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT
Sbjct: 254 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPGLWT 313

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            EF+ + + +   A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF 
Sbjct: 314 PEFKAEIKDLFMRAVELEYKYAEDTMPRGVLGMNASMFKGYLRYIANRRAQQIGLETLFP 373

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 374 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 411


>gi|331006663|ref|ZP_08329944.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
           proteobacterium IMCC1989]
 gi|330419531|gb|EGG93916.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
           proteobacterium IMCC1989]
          Length = 444

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 280/352 (79%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    G+  ++ G  RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 93  IDPTPGIEELEMGAARVGVDEKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 152

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D++LWK  +GL+DDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ
Sbjct: 153 MTADISLWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQ 212

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+  KA W++ +TQ +S P+F TGT +
Sbjct: 213 AFEEAIHTHAYQYCIESLGMDEGEIFNMYREVPSVANKAAWSIAHTQGISDPTFNTGTTE 272

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQE L++L  FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 273 TDQELLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 332

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLWT+EF+ +   M+ E T LEIAYA +TMP+G +G+NA   E+Y+QFI+
Sbjct: 333 IINQIKLENPHLWTEEFKAEVTQMVLEGTELEIAYARDTMPRGVLGMNAAMMEEYLQFIS 392

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  Q+GL   +   +NPFPWMSE++DL+KEKNFFETRV EYQ G  L W+
Sbjct: 393 NRRLAQLGLTEQYPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWE 444


>gi|74317993|ref|YP_315733.1| ribonucleotide-diphosphate reductase subunit beta [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057488|gb|AAZ97928.1| ribonucleoside-diphosphate reductase beta chain [Thiobacillus
           denitrificans ATCC 25259]
          Length = 376

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 204/339 (60%), Positives = 258/339 (76%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
             RV   DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+A WK    
Sbjct: 38  TTRVRASDKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIAQWKDPTA 97

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QY
Sbjct: 98  LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 157

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDE E+FN Y E+ SI  K ++ + +  TL++P F TGT + DQ+ L+ L VF 
Sbjct: 158 IVESLGLDEAEIFNAYHEIESIRDKDDFLIPFIDTLTNPEFKTGTPENDQKLLKSLIVFA 217

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK ENPHLW
Sbjct: 218 CIMEGIFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTIKQENPHLW 277

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + RT++ +   LE  YA +TMP+G +GLN+   ++Y++FI+NRRC QIGL+ +F
Sbjct: 278 TSEFKAEIRTLIQKGVELEFRYAEDTMPRGVLGLNSAQFKEYLRFISNRRCQQIGLDEMF 337

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
               NPFPWM+E+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 338 PGVSNPFPWMAEMIDLKKEKNFFETRVTEYQTGGALSWD 376


>gi|325983070|ref|YP_004295472.1| ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212]
 gi|325532589|gb|ADZ27310.1| Ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212]
          Length = 381

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 208/338 (61%), Positives = 267/338 (78%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +R+ V+DK+++N  +DVNQL+P KY WAW+KYL AC NHWMP E+ M  D+ALW+  NGL
Sbjct: 44  RRIAVEDKQIINCNADVNQLVPFKYKWAWDKYLGACANHWMPQEISMSRDIALWRDPNGL 103

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H +QYI
Sbjct: 104 TEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQYI 163

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDEGE+FN Y EV SI  K  + + +  TL++P F TGT + DQ+ L+ L VF  
Sbjct: 164 VESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIDTLTNPHFKTGTLETDQQLLRSLIVFAC 223

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVINQIK+ENP LWT
Sbjct: 224 IMEGLFFYVGFTQILALGRQNKMTGSAEQYQYILRDESMHCNFGIDVINQIKMENPQLWT 283

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K F+++   ++ +A  LE  YA +TMP+G +G+NAP  ++Y+++IANRRC QIGL+ L+ 
Sbjct: 284 KAFREEIAALMQKAVALEYRYAEDTMPRGVLGMNAPMFKEYLRYIANRRCQQIGLDTLYP 343

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              NPFPWMSE++DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 344 NANNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 381


>gi|319764328|ref|YP_004128265.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
           BC]
 gi|330826374|ref|YP_004389677.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
           K601]
 gi|317118889|gb|ADV01378.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
           BC]
 gi|329311746|gb|AEB86161.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
           K601]
          Length = 396

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 203/339 (59%), Positives = 260/339 (76%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RV+  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NG
Sbjct: 58  HRRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMTRDIALWKDPNG 117

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 118 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 177

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDEGE+FN Y EV SI AK  + + + + +  P+F TGT + DQ  L+ L VF 
Sbjct: 178 IVESLGLDEGEIFNAYNEVESIRAKDEFLIPFIEAIMDPAFKTGTPENDQTLLKSLIVFA 237

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LW
Sbjct: 238 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPQLW 297

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T  F+ + + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGL+ LF
Sbjct: 298 TPAFKDEIKGLFLKAVDLEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLDALF 357

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 358 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 396


>gi|239813962|ref|YP_002942872.1| ribonucleotide-diphosphate reductase subunit beta [Variovorax
           paradoxus S110]
 gi|239800539|gb|ACS17606.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus S110]
          Length = 391

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 206/337 (61%), Positives = 258/337 (76%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RV   DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGLT
Sbjct: 55  RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 114

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 115 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 174

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDE E+FN Y EVPSI  K  + + +   +S P+F TGT + DQ  L+ L VF  +
Sbjct: 175 ESLGLDESEIFNAYNEVPSIREKDQFLIPFIDAISDPNFKTGTHETDQTLLKSLIVFACL 234

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT 
Sbjct: 235 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPGLWTP 294

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           EF+ + + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF  
Sbjct: 295 EFKAEIKALFLKAVELEYKYAEDTMPRGVLGMNASMFKGYLRYIANRRAQQIGLETLFPN 354

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 355 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 391


>gi|330983931|gb|EGH82034.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 388

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 216/353 (61%), Positives = 283/353 (80%), Gaps = 1/353 (0%)

Query: 1   MANNTGLSPIQAG-EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M    G   ++ G + RV V  K+M+NAR+DVNQL+P KY WAW+KYL  C+NHWMP EV
Sbjct: 36  MDIGAGERELEEGRQNRVQVGQKQMINARADVNQLVPFKYEWAWQKYLDGCSNHWMPQEV 95

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            M  D+ALWK  NGLTDDERL++KRNLG+F++++SLVANN+VLA+YR ++NPECRQY+LR
Sbjct: 96  NMSADIALWKDPNGLTDDERLILKRNLGYFSTADSLVANNLVLAVYRLITNPECRQYILR 155

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAFEEA+H+H +QY + SLGLD+GE+FNMY+EVPS+  KA W++++   ++ P+F TGT 
Sbjct: 156 QAFEEAIHTHAYQYCVESLGLDDGEIFNMYQEVPSVARKAAWSIKHMDAITDPAFQTGTV 215

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +AD  FL++L  +Y V EG++FY GF Q LS+GR NK+VG+AEQ+QYI+RDES+HLNFGI
Sbjct: 216 EADTTFLKNLIAYYCVTEGIFFYCGFTQTLSMGRRNKLVGVAEQFQYILRDESMHLNFGI 275

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           D+INQIKIENPHLWT E ++++  M+ + T LEIAYA +TMP+G +G+NA   E+Y+QFI
Sbjct: 276 DMINQIKIENPHLWTDELKREATVMIIQGTQLEIAYARDTMPRGVLGMNAAMMEEYLQFI 335

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           ANRR  QIGL  ++   +NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 336 ANRRLTQIGLPEVYAGAKNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 388


>gi|119713586|gb|ABL97637.1| ribonucleotide-diphosphate reductase beta subunit [uncultured
           marine bacterium EB0_39H12]
          Length = 412

 Score =  334 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 214/352 (60%), Positives = 274/352 (77%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    G   ++    RV VDDK M+N R+D+NQL+P KY WAW+KYL    NHWMP EV 
Sbjct: 61  LDAKAGEEELEGLAGRVQVDDKAMINCRADLNQLVPFKYDWAWQKYLDGSANHWMPQEVN 120

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWKS +GLT+DER ++ RNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ
Sbjct: 121 MTADIALWKSNDGLTEDERTIVMRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQ 180

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
            FEEA+H+H +QY I SLG+DEG +FNMYRE+PS+  KA+W L+YT+ +S P FTTGT +
Sbjct: 181 GFEEAIHTHAYQYCIESLGMDEGAIFNMYREIPSVAKKASWGLKYTKEISDPGFTTGTDE 240

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+  L++L  FY V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID
Sbjct: 241 TDKLLLKNLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 300

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIK+ENPHLW ++ + ++  M+ E T LEI YA +TMP+G +G+NA   E+Y+QFIA
Sbjct: 301 MINQIKLENPHLWDEQMRHEAAQMILEGTELEIQYARDTMPRGILGMNAGMMEEYLQFIA 360

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRR  QIGLE  F+   NPFPWMSE++DL+KEKNFFETRV EYQ G  L WD
Sbjct: 361 NRRLVQIGLEEEFEGASNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 412


>gi|134095932|ref|YP_001101007.1| ribonucleotide-diphosphate reductase subunit beta [Herminiimonas
           arsenicoxydans]
 gi|133739835|emb|CAL62886.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
           reductase small subunit) [Herminiimonas arsenicoxydans]
          Length = 395

 Score =  334 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 208/340 (61%), Positives = 266/340 (78%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
             +R++  DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ N
Sbjct: 56  PTRRMDAADKRIINGKTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN 115

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GLTDDER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +Q
Sbjct: 116 GLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 175

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDEGE+FN Y E+ SI  K  + + +   L+ P+FTTGT + DQ  L+ L VF
Sbjct: 176 YIVESLGLDEGEIFNAYNEIESIRDKDQFLIPFIDVLTDPNFTTGTTENDQTLLRSLIVF 235

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GFAQIL+LGR NKM+G AEQYQYI+RDES+H NFGID+IN IK+ENPHL
Sbjct: 236 ACLMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHL 295

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT +F+ + + +   A  LE  YA +TMP+G +GLNAP  + Y++FIANRR  QIGLEP+
Sbjct: 296 WTPQFRDEIKALFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPM 355

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F+  ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 356 FEQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 395


>gi|34497739|ref|NP_901954.1| ribonucleotide-diphosphate reductase subunit beta [Chromobacterium
           violaceum ATCC 12472]
 gi|34103595|gb|AAQ59956.1| ribonucleoside-diphosphate reductase system [Chromobacterium
           violaceum ATCC 12472]
          Length = 360

 Score =  334 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 204/340 (60%), Positives = 257/340 (75%), Gaps = 1/340 (0%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           G  RVNV DK+++N  +DVNQL+P K+ WAWEKYL+ C NHWMP EV MQ D+  WK+  
Sbjct: 22  GTGRVNVVDKKVINGTTDVNQLVPFKHKWAWEKYLAQCANHWMPQEVNMQRDIEQWKT-G 80

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT+DE  ++KRNLGFF +++SL ANNIVL  YR +++PECRQ+LLRQAF+EA+H+H +Q
Sbjct: 81  QLTEDEMRIVKRNLGFFVTADSLAANNIVLGTYRQITSPECRQFLLRQAFDEAIHTHAYQ 140

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDEGE+FN Y EV SI  K  + + +   L +P F TGT + DQ+ L+ L VF
Sbjct: 141 YIVESLGLDEGEVFNAYHEVKSIRDKDEFLIPFIDVLCNPEFKTGTVENDQKLLKSLIVF 200

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK+ENP L
Sbjct: 201 ACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTIKLENPLL 260

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT  F+ +   +  +A  LE AYA +TMP+G +GLNA   ++Y++FIANRR  QIGL+PL
Sbjct: 261 WTDSFKAEIVDLFKQAVELEYAYAEDTMPRGVLGLNASMFKEYLRFIANRRMQQIGLDPL 320

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F    NPFPWMSE+IDLKKEKNFFETRVTEYQ G  L WD
Sbjct: 321 FPGVNNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 360


>gi|317402620|gb|EFV83180.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
           xylosoxidans C54]
          Length = 399

 Score =  334 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 210/350 (60%), Positives = 268/350 (76%), Gaps = 1/350 (0%)

Query: 4   NTGLSPIQAGEK-RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
             GL+        RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M 
Sbjct: 50  AAGLTASGNATSQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMS 109

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAF
Sbjct: 110 RDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAF 169

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEA+H+H +QYI+ SL LDE E+FN Y EVPSI AK  + + +   ++ P+F TGT +AD
Sbjct: 170 EEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEAD 229

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+I
Sbjct: 230 QTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLI 289

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           N +K+ENPHLWT EF+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANR
Sbjct: 290 NTVKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANR 349

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RC QIG+EPL+   ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 350 RCQQIGIEPLYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399


>gi|91787004|ref|YP_547956.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas sp.
           JS666]
 gi|91696229|gb|ABE43058.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666]
          Length = 406

 Score =  334 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 208/337 (61%), Positives = 258/337 (76%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RV   DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGLT
Sbjct: 70  RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 129

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI 
Sbjct: 130 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIT 189

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDE E+FN Y EV SI  K  + + + + +S P F TGT +ADQ  L+ L VF  +
Sbjct: 190 ESLGLDEAEIFNAYNEVQSIKDKDQFLIPFIEVISDPHFKTGTTEADQTLLKSLIVFACL 249

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT 
Sbjct: 250 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTA 309

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           EF+ + + +  +A  LE  YA +TMP+G +GLNA   + Y+++IANRR  QIGLE LF  
Sbjct: 310 EFKAEIKALFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLETLFPN 369

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 370 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 406


>gi|167586060|ref|ZP_02378448.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           ubonensis Bu]
          Length = 403

 Score =  334 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 213/337 (63%), Positives = 266/337 (78%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGLT
Sbjct: 67  RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 126

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 127 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 186

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDEGE+FN Y EV SI AK  + + +  TL+ P+F TGT +ADQ+ L+ L VF  +
Sbjct: 187 ESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFACI 246

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLWT 
Sbjct: 247 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 306

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           EF+ + R +  +A  LE  YA +TMP+G +GLNA   + Y++FI NRRC QIGL+PL+  
Sbjct: 307 EFRAEIRELFKQAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLYPN 366

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 367 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403


>gi|255019430|ref|ZP_05291537.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Acidithiobacillus caldus ATCC 51756]
 gi|254971128|gb|EET28583.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Acidithiobacillus caldus ATCC 51756]
          Length = 345

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 210/340 (61%), Positives = 272/340 (80%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
              RV V+DKR++N R+DVNQL+P KY WAW+KYL+AC NHWMP EV M  D+ALWK   
Sbjct: 5   ATARVRVEDKRIINGRADVNQLVPFKYQWAWDKYLAACANHWMPQEVQMARDIALWKDPK 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +Q
Sbjct: 65  GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDEGE+FNMY EVPS+ AK  + + + +TL+ P F TGT++ DQ+ L+ L VF
Sbjct: 125 YIVESLGLDEGEIFNMYHEVPSVRAKDEFLIPFIETLADPDFQTGTRENDQKLLRSLIVF 184

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+INQIK+ENP L
Sbjct: 185 ATIMEGLFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLINQIKLENPQL 244

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT+ FQQ+   ++ +   LE AYA +TMP+G +GLNAP  ++Y+++I NRR  QIGL+P 
Sbjct: 245 WTEGFQQEIVGLIRQGVELECAYADDTMPRGILGLNAPMFKEYVRYIGNRRLSQIGLKPQ 304

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           ++  +NPFPWMSE++DLKKEKNFFE+RVT+YQ G  L WD
Sbjct: 305 WENVQNPFPWMSEMMDLKKEKNFFESRVTDYQTGGALSWD 344


>gi|171057074|ref|YP_001789423.1| ribonucleotide-diphosphate reductase subunit beta [Leptothrix
           cholodnii SP-6]
 gi|170774519|gb|ACB32658.1| Ribonucleoside-diphosphate reductase [Leptothrix cholodnii SP-6]
          Length = 402

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 208/338 (61%), Positives = 255/338 (75%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+A WK  NGL
Sbjct: 65  RRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWKDPNGL 124

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           TDDER +IKRNLGFF +++SL ANNI L  YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 125 TDDERRLIKRNLGFFVTADSLAANNITLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 184

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + SLGLDE E+FN Y EV SI  K  + + Y   +  P F TGT + DQ  L+ L VF  
Sbjct: 185 VESLGLDESEIFNAYHEVASIREKDEFLIPYIDAIMDPHFKTGTPENDQTLLKSLIVFAC 244

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK+ENPHLWT
Sbjct: 245 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINAIKLENPHLWT 304

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
             F+ + + +  +A  LE  YA +TMP+G +GLNA   + Y+++IANRR  QIGLE LF 
Sbjct: 305 PAFKAEIKALFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLEELFP 364

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 402


>gi|145588393|ref|YP_001154990.1| ribonucleotide-diphosphate reductase subunit beta [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046799|gb|ABP33426.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 394

 Score =  332 bits (851), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 207/337 (61%), Positives = 262/337 (77%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RVN  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGLT
Sbjct: 58  RVNAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMNRDIALWKDPNGLT 117

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QYI+
Sbjct: 118 EDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 177

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLD+ E+FN Y E+ SI AK  + + Y   L++P+F TGT + DQ  L+ L VF  V
Sbjct: 178 ESLGLDQSEIFNAYNEIESIRAKDEFLIPYIDVLTNPNFKTGTLETDQTLLRSLIVFACV 237

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL++GR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LWT 
Sbjct: 238 MEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWTS 297

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            F+ + +++  +A  LE  YA +TMP+G +GLNAP  + Y+++I NRRC QIGL+ +F  
Sbjct: 298 AFKDEIKSIFEKAVELEYRYAEDTMPRGVLGLNAPMFKGYLRYICNRRCLQIGLDAMFPN 357

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 358 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 394


>gi|30250346|ref|NP_842416.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas
           europaea ATCC 19718]
 gi|30181141|emb|CAD86334.1| Ribonucleotide reductase [Nitrosomonas europaea ATCC 19718]
          Length = 382

 Score =  332 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 216/339 (63%), Positives = 271/339 (79%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M  D+ALWK  NG
Sbjct: 44  HRRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPNG 103

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H +QY
Sbjct: 104 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQY 163

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ S+GLDEGE+FN Y E+ SI  K  + + +  TL+ PSF TGT + DQ+ L+ L VF 
Sbjct: 164 IVESIGLDEGEIFNAYHEIGSIRDKDEFLIPFIDTLTDPSFRTGTLETDQQLLKSLIVFA 223

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVINQIK+ENPHLW
Sbjct: 224 CIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDVINQIKLENPHLW 283

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T+EF+++   ++ +A  LE  YA +TMP+G +GLNAP  ++Y++FI NRR HQIGL+PLF
Sbjct: 284 TREFREEISALMRKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRFIINRRSHQIGLDPLF 343

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
               NPFPWMSE+IDLKKEKNFFETRV EYQ G  L WD
Sbjct: 344 PEAGNPFPWMSEMIDLKKEKNFFETRVIEYQTGGVLSWD 382


>gi|300022335|ref|YP_003754946.1| ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524156|gb|ADJ22625.1| Ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 374

 Score =  331 bits (849), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 266/351 (75%), Positives = 294/351 (83%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            + TGL  I     RV VDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV M
Sbjct: 24  EDATGLGNIDRNGGRVRVDDKAMINARADVNQLLPLKYRWAWEKYLAGCNNHWMPTEVSM 83

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D+ALWKSK+GLT++ER MIKRNLGFFA+SESLVANNIVLAIYR+L+NPECRQYLLRQA
Sbjct: 84  QADIALWKSKDGLTEEERRMIKRNLGFFAASESLVANNIVLAIYRNLTNPECRQYLLRQA 143

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L  PSF TGTK+ 
Sbjct: 144 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALAYTKHLDDPSFKTGTKET 203

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV
Sbjct: 204 DQAFLRDLIAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 263

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQIK EN HLW+K FQ + R ML +A  LE AY  +TMP G +GLN    EQYM+FIAN
Sbjct: 264 INQIKAENAHLWSKAFQDEVRGMLRDAAQLEAAYGRDTMPTGLLGLNPGLTEQYMEFIAN 323

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RRC Q+GL P+FK  ENPFPWMSE +DLKKEKNFFETRV EYQ G  L W+
Sbjct: 324 RRCAQLGLTPVFKDRENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 374


>gi|120609557|ref|YP_969235.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax
           citrulli AAC00-1]
 gi|120588021|gb|ABM31461.1| Ribonucleoside-diphosphate reductase [Acidovorax citrulli AAC00-1]
          Length = 387

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 206/339 (60%), Positives = 260/339 (76%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RVN  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 49  HRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 108

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 109 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 168

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDE E+FN Y EV SI  K  + + + + +  P F TGT + DQ  L+ L VF 
Sbjct: 169 IVESLGLDESEIFNAYNEVDSIRHKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIVFA 228

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLW
Sbjct: 229 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLW 288

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+++ + +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF
Sbjct: 289 TAEFKEEIKGLFMKAVELEYQYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALF 348

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 349 PNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387


>gi|241764092|ref|ZP_04762129.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN]
 gi|241366556|gb|EER61044.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN]
          Length = 398

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 208/339 (61%), Positives = 260/339 (76%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RVN  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 60  HRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 119

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LTDDER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 120 LTDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 179

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGLDE E+FN Y EV SI  K  + + + + +  P+F TGT +ADQ  L+ L VF 
Sbjct: 180 IVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFKTGTPEADQRLLKSLIVFA 239

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLW
Sbjct: 240 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLW 299

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+ + + +   A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF
Sbjct: 300 TAEFKAEIKALFMRAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLETLF 359

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 360 PNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 398


>gi|160896947|ref|YP_001562529.1| ribonucleotide-diphosphate reductase subunit beta [Delftia
           acidovorans SPH-1]
 gi|160362531|gb|ABX34144.1| Ribonucleoside-diphosphate reductase [Delftia acidovorans SPH-1]
          Length = 363

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 210/342 (61%), Positives = 262/342 (76%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
               KRVN  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK 
Sbjct: 22  STTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKD 81

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            NGLT+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H 
Sbjct: 82  PNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHA 141

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +QYI+ SLGLDEGE+FN Y EVPSI  K  + + + + +  P+F TGT + DQ  L+ L 
Sbjct: 142 YQYIVESLGLDEGEIFNAYLEVPSIRDKDEFLIPFIEAIMDPAFKTGTFETDQTLLKSLI 201

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP
Sbjct: 202 VFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENP 261

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            LWT EF+++   +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE
Sbjct: 262 QLWTPEFKEEITALFVKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLE 321

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 322 ALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363


>gi|121608466|ref|YP_996273.1| ribonucleotide-diphosphate reductase subunit beta
           [Verminephrobacter eiseniae EF01-2]
 gi|121553106|gb|ABM57255.1| Ribonucleoside-diphosphate reductase [Verminephrobacter eiseniae
           EF01-2]
          Length = 399

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 206/342 (60%), Positives = 258/342 (75%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            A ++RVN  DKR++N ++DVNQL+PLKY WAWEKYL++C NHWMP EV M  D+ALWK+
Sbjct: 58  DAAQRRVNAADKRIINGQTDVNQLVPLKYKWAWEKYLASCANHWMPQEVNMTRDIALWKT 117

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
             GL+DDER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H 
Sbjct: 118 PGGLSDDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHA 177

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +QYI+ SLGLDE E+FN Y EV SI  K  + + + + +  P F TG+   DQ  L+ L 
Sbjct: 178 YQYIVESLGLDESEIFNAYNEVRSIRDKDQFLIPFIEAIMDPHFHTGSAANDQTLLKSLI 237

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           VF  + EG++FY GFAQIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP
Sbjct: 238 VFACLMEGLFFYVGFAQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENP 297

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            LWT  F+ +   +  +A  LE  YA +TMP G +G+NA   + Y+++IANRR  QIGLE
Sbjct: 298 LLWTTAFKAEIEALFLQAVELEYRYAEDTMPHGVLGMNASMFKGYLRYIANRRATQIGLE 357

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            LF    NPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 358 TLFPQETNPFPWMSEMIDLKKERNFFETRVIEYQSGGALCWD 399


>gi|299533977|ref|ZP_07047329.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas
           testosteroni S44]
 gi|298717886|gb|EFI58891.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas
           testosteroni S44]
          Length = 363

 Score =  330 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 210/351 (59%), Positives = 264/351 (75%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A +       +  KRVN  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M
Sbjct: 13  ATSAEAGASTSTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNM 72

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQA
Sbjct: 73  TRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 132

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEA+H+H +QYI+ SLGLDE E+FN Y EV SI  K  + + + + +  P+F TGT + 
Sbjct: 133 FEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPET 192

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+
Sbjct: 193 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 252

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQ+K+ENPHLWT EF+Q+   +  +A  LE  YA +TMP+G +G+NA   + Y+++IAN
Sbjct: 253 INQLKLENPHLWTAEFKQEITELFQKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIAN 312

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RR  QIGLE LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 313 RRATQIGLEELFPGEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363


>gi|221065168|ref|ZP_03541273.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1]
 gi|220710191|gb|EED65559.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1]
          Length = 363

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 210/351 (59%), Positives = 263/351 (74%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A +       +  KRVN  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M
Sbjct: 13  ATSAEAGASTSTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNM 72

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQA
Sbjct: 73  TRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 132

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
           FEEA+H+H +QYI+ SLGLDE E+FN Y EV SI  K  + + + + +  P+F TGT + 
Sbjct: 133 FEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPET 192

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           DQ  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+
Sbjct: 193 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 252

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
           INQ+K+ENPHLWT EF+Q+   +   A  LE  YA +TMP+G +G+NA   + Y+++IAN
Sbjct: 253 INQLKLENPHLWTAEFKQEITELFQRAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIAN 312

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RR  QIGLE LF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 313 RRATQIGLEELFPGEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363


>gi|293603286|ref|ZP_06685715.1| ribonucleotide-diphosphate reductase subunit beta subunit
           [Achromobacter piechaudii ATCC 43553]
 gi|292818321|gb|EFF77373.1| ribonucleotide-diphosphate reductase subunit beta subunit
           [Achromobacter piechaudii ATCC 43553]
          Length = 398

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 207/339 (61%), Positives = 264/339 (77%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RV V DKR++N  +DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK+ NG
Sbjct: 60  SQRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNG 119

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 120 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 179

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SL LDE E+FN Y EVPSI AK  + + +   ++ P+F TGT +ADQ  L+ L VF 
Sbjct: 180 IVESLDLDEAEIFNAYNEVPSIRAKDQFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFA 239

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN +K+ENPHLW
Sbjct: 240 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLW 299

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T  F+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANRRC QIG+EPL+
Sbjct: 300 TPAFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLY 359

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 PQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 398


>gi|114321252|ref|YP_742935.1| ribonucleotide-diphosphate reductase subunit beta [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227646|gb|ABI57445.1| Ribonucleoside-diphosphate reductase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 354

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 257/350 (73%), Positives = 296/350 (84%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           N TGL  I+AG  RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEVPM 
Sbjct: 5   NATGLEAIEAGAHRVSVDEKRMINCRADVNQLLPLKYEWAWEKYLAGCNNHWMPTEVPMG 64

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+ALW+  +GLT DERLMIKRNLGFFA+SESLVANNIVLAIYRH++NPECRQYLLRQAF
Sbjct: 65  ADIALWRHPDGLTADERLMIKRNLGFFATSESLVANNIVLAIYRHITNPECRQYLLRQAF 124

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEA+H+HTFQYI+ SL LDEGELFNMYREVPSIT KA WAL+YTQ L S  F T +++  
Sbjct: 125 EEAIHTHTFQYIVESLDLDEGELFNMYREVPSITDKAAWALKYTQNLESGHFDTTSREGA 184

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q FL+DL  FYVVFEGMWFYTGFAQILSLGR NKM GIAE YQYI+RDES+HLNFGIDVI
Sbjct: 185 QSFLRDLVAFYVVFEGMWFYTGFAQILSLGRQNKMTGIAEMYQYILRDESIHLNFGIDVI 244

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQI+ ENP LWT +F+Q+  TML EA  LE+AYA +TMP+G +GLNA  CE+YM FI NR
Sbjct: 245 NQIRHENPELWTNDFEQEVLTMLREAVELEVAYARDTMPRGMLGLNADMCEEYMHFITNR 304

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           RC Q+GL+ L+    NPFPWMSEV+DL+KEKNFFETRVT+Y+ G  L+WD
Sbjct: 305 RCAQLGLKELYPGATNPFPWMSEVMDLQKEKNFFETRVTDYRTGGALQWD 354


>gi|255019898|ref|ZP_05291973.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970678|gb|EET28165.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Acidithiobacillus caldus ATCC 51756]
          Length = 374

 Score =  330 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 209/338 (61%), Positives = 267/338 (78%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV  +DKR++N  +DVNQL+P KY WAW+KYL+AC NHWMP EV M  D+ALWK   GL
Sbjct: 37  ERVRAEDKRIINGSADVNQLVPFKYHWAWDKYLAACANHWMPQEVQMARDIALWKDPKGL 96

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 97  TEDERRIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 156

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + S+GLDEGE+FNMY EVPSI AK  + L + +TL+ PSF TGT + DQ+ L+ L VF  
Sbjct: 157 VESIGLDEGEIFNMYHEVPSIRAKDEFLLPFIRTLTDPSFHTGTPENDQKLLRSLIVFAA 216

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+INQIK+ENP LWT
Sbjct: 217 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLINQIKVENPDLWT 276

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           + FQ++  +++ +   LE AYA +TMP+G +GLNAP  + Y+++I NRR  Q+GL   + 
Sbjct: 277 EPFQEEIVSLIRKGVELECAYADDTMPRGVLGLNAPIFKDYVKYIGNRRLQQLGLPVQWA 336

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +NPFPWMSE++DLKKEKNFFETRVTEYQ G  L WD
Sbjct: 337 GIQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 374


>gi|300309722|ref|YP_003773814.1| transmembrane ribonucleoside reductase small subunit
           [Herbaspirillum seropedicae SmR1]
 gi|300072507|gb|ADJ61906.1| transmembrane ribonucleoside reductase (small chain) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 388

 Score =  330 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 210/348 (60%), Positives = 266/348 (76%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            G S      +RVN  DKR++N  +DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D
Sbjct: 41  AGNSEQVDTTRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRD 100

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           + LWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEE
Sbjct: 101 IELWKNPNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEE 160

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+H +QYI+ SLGLDE E+FN Y EV SI  K  + + +  TL+ P F TGT + DQ+
Sbjct: 161 AIHTHAYQYIVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQK 220

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L+ L VF  + EG++FY GF QIL+LGR NKM+G AEQYQYI+RDES+H NFGID+IN 
Sbjct: 221 LLKSLIVFACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINT 280

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +K+ENPHLWT EF+++ +++   A  LE  YA +TMP+G +GLNAP  + Y++FIANRR 
Sbjct: 281 VKMENPHLWTPEFREEIKSLFLRAVELEYRYAEDTMPRGVLGLNAPMFKSYLRFIANRRA 340

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            QIGL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 341 QQIGLDPLFAQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 388


>gi|311103857|ref|YP_003976710.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
           xylosoxidans A8]
 gi|310758546|gb|ADP13995.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
           xylosoxidans A8]
          Length = 399

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 208/339 (61%), Positives = 266/339 (78%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK+ NG
Sbjct: 61  SQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNG 120

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 121 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 180

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SL LDE E+FN Y EVPSI AK  + + +   ++ P+F TGT +ADQ  L+ L VF 
Sbjct: 181 IVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFA 240

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN +K+ENPHLW
Sbjct: 241 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLW 300

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EF+++ R +  +A  LE AYA +TMP+G +GLNAP  + Y++FIANRRC QIG+EPL+
Sbjct: 301 TPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLY 360

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
              ENPFPWM+E+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 361 PQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399


>gi|198284354|ref|YP_002220675.1| ribonucleotide-diphosphate reductase subunit beta
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198248875|gb|ACH84468.1| Ribonucleoside-diphosphate reductase [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 374

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 201/338 (59%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV  +DKR++N  +DVNQL+P KY WAW+KYL+AC NHWMP E+ M  D+ALWK   GL
Sbjct: 37  ERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKDPKGL 96

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQY+LRQAFEEA+H+H +QYI
Sbjct: 97  TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHAYQYI 156

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + S+GLDEGE+FNMY EVPS+  K  + + +   L+ P F TGT + DQ+ L+ L VF  
Sbjct: 157 VESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLENDQKLLRSLIVFAA 216

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+ NQIK+ENP LWT
Sbjct: 217 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMANQIKVENPQLWT 276

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           + FQQ+   ++     LE AYA +TMP+G +GLNAP   +Y+++I NRR  Q+GL   + 
Sbjct: 277 EAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVKYIGNRRLVQLGLPQQYP 336

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +NPFPWMSE++DLKKEKNFFETRVTEYQ G  L W+
Sbjct: 337 GVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 374


>gi|315122301|ref|YP_004062790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495703|gb|ADR52302.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 372

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 276/352 (78%), Positives = 313/352 (88%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A+  GL PIQ G  R++ D+KRM+NARSDVNQLLPLKY WAWEKYL  CNNHWMPTEV 
Sbjct: 21  IADTVGLGPIQKGSARIHADEKRMINARSDVNQLLPLKYKWAWEKYLFGCNNHWMPTEVS 80

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           MQ D+ALW+SKNGLT+DER MIKRNLGFFA+SESLVANNIVLAIYRH+SNPECRQYLLRQ
Sbjct: 81  MQADIALWQSKNGLTNDERHMIKRNLGFFATSESLVANNIVLAIYRHISNPECRQYLLRQ 140

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEAVH+HTFQYI+ SL L+EGELFNMYRE+PSIT KA+WAL+YT+ L+S SF+TGT D
Sbjct: 141 AFEEAVHTHTFQYIVESLSLNEGELFNMYREIPSITNKASWALRYTKNLNSTSFSTGTDD 200

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            DQ+FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYIMRDES+HLNFGID
Sbjct: 201 RDQDFLRDLIAFYVVFEGMWFYTGFAQILSLGRYNKMVGIAEQYQYIMRDESVHLNFGID 260

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +INQIKIENPHLWT++FQQ+ R ML EA LLE+AY  +TMPK F+G+NA  CE+YM FI 
Sbjct: 261 MINQIKIENPHLWTEDFQQEVRKMLQEAALLEVAYGKDTMPKPFLGINANLCEKYMYFIT 320

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NRRC QIGL+P+F+ TENPFPWMSEVIDL+KEKNFFETRVTEYQ+G  L WD
Sbjct: 321 NRRCTQIGLDPVFEKTENPFPWMSEVIDLQKEKNFFETRVTEYQKGTSLDWD 372


>gi|152980709|ref|YP_001354668.1| ribonucleotide-diphosphate reductase subunit beta
           [Janthinobacterium sp. Marseille]
 gi|151280786|gb|ABR89196.1| ribonucleoside-diphosphate reductase beta chain [Janthinobacterium
           sp. Marseille]
          Length = 392

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 210/340 (61%), Positives = 269/340 (79%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
             +R++  DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ N
Sbjct: 53  PTRRMDAADKRVINGQTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN 112

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GLTDDER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +Q
Sbjct: 113 GLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 172

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDEGE+FN Y EV SI  K  + + + +TL+ P F TGT + DQ+ L+ L VF
Sbjct: 173 YIVESLGLDEGEIFNAYNEVESIRDKDQFLIPFIETLTDPEFKTGTTENDQKLLRSLIVF 232

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             + EG++FY GFAQIL+LGR NKM+G AEQYQYI+RDES+H NFGID+IN IK+ENPHL
Sbjct: 233 ACLMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHL 292

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT +F+++ +T+   A  LE  YA +TMP+G +GLNAP  + Y++FIANRR  QIGLEP+
Sbjct: 293 WTPQFREEIKTLFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPM 352

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F+  ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 353 FEQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 392


>gi|261855609|ref|YP_003262892.1| ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus
           c2]
 gi|261836078|gb|ACX95845.1| Ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus
           c2]
          Length = 398

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 253/349 (72%), Positives = 287/349 (82%), Gaps = 1/349 (0%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            TGL  I  G  RV+V  KR++NA +DVNQLLP+KY WAWEKYL+ CNNHWMPTEV MQ 
Sbjct: 50  QTGLEGIAQGAGRVDVSAKRIINATADVNQLLPMKYTWAWEKYLAGCNNHWMPTEVSMQA 109

Query: 64  DLALWKSKNG-LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
           D+ALWK ++G LT DER MI RNLGFFA++ESLVANNIVLAIY+ ++NPECRQYLLRQAF
Sbjct: 110 DIALWKGRDGGLTADERAMIMRNLGFFATAESLVANNIVLAIYKQVTNPECRQYLLRQAF 169

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEAVH+HTFQYI+ SLGL EGELFNMYRE+PSITAK  WAL+YT+ L+   F T T    
Sbjct: 170 EEAVHTHTFQYIVESLGLAEGELFNMYREIPSITAKDEWALKYTKNLADGDFDTSTTKGA 229

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q+FL+DL  FYVVFEGMWFYTGFAQILSLGR NKM GIAEQYQYIMRDES+H+NFGIDVI
Sbjct: 230 QDFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMTGIAEQYQYIMRDESIHMNFGIDVI 289

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQIKIENPHLWT++F+ +   ML EA  LEIAYA +TMP G +GLNA  C +Y+ FIANR
Sbjct: 290 NQIKIENPHLWTEDFKAEVTRMLKEAAELEIAYARDTMPHGLLGLNAEMCAEYLHFIANR 349

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           RC+QIGL  LF    NPFPWMSEVIDLKKEKNFFETRVT+YQ G  L W
Sbjct: 350 RCNQIGLAELFPGATNPFPWMSEVIDLKKEKNFFETRVTDYQTGGALNW 398


>gi|114332419|ref|YP_748641.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas
           eutropha C91]
 gi|114309433|gb|ABI60676.1| Ribonucleoside-diphosphate reductase [Nitrosomonas eutropha C91]
          Length = 377

 Score =  328 bits (840), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 215/339 (63%), Positives = 272/339 (80%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M  D+ALWK  NG
Sbjct: 39  HRRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPNG 98

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DER ++KRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H +QY
Sbjct: 99  LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQY 158

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ S+GLDEGE+FN Y E+ SI  K  + + +  TL++P+F TGT + DQ+ L+ L VF 
Sbjct: 159 IVESIGLDEGEIFNAYHEIKSIRDKDEFLIPFIDTLTNPTFQTGTLETDQQLLKSLIVFA 218

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG++FY GF QILSLGR NKM G AEQYQYI+RDES+H NFGIDVINQIK+ENPHLW
Sbjct: 219 CIMEGLFFYVGFVQILSLGRQNKMTGAAEQYQYILRDESMHCNFGIDVINQIKLENPHLW 278

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T+EF+++   ++ +A  LE  YA +TMP+G +GLNAP  ++Y++FI NRR HQIGL+PLF
Sbjct: 279 TREFREEISALMRKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRFIINRRSHQIGLDPLF 338

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
               NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 339 PEAGNPFPWMSEMVDLKKEKNFFETRVIEYQTGGVLSWD 377


>gi|218665361|ref|YP_002427016.1| ribonucleoside-diphosphate reductase, beta subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218517574|gb|ACK78160.1| ribonucleoside-diphosphate reductase, beta subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 380

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 201/338 (59%), Positives = 260/338 (76%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +RV  +DKR++N  +DVNQL+P KY WAW+KYL+AC NHWMP E+ M  D+ALWK   GL
Sbjct: 43  ERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKDPKGL 102

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T+DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQY+LRQAFEEA+H+H +QYI
Sbjct: 103 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHAYQYI 162

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + S+GLDEGE+FNMY EVPS+  K  + + +   L+ P F TGT + DQ+ L+ L VF  
Sbjct: 163 VESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLENDQKLLRSLIVFAA 222

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+ NQIK+ENP LWT
Sbjct: 223 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMANQIKVENPQLWT 282

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           + FQQ+   ++     LE AYA +TMP+G +GLNAP   +Y+++I NRR  Q+GL   + 
Sbjct: 283 EAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVKYIGNRRLVQLGLPQQYP 342

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +NPFPWMSE++DLKKEKNFFETRVTEYQ G  L W+
Sbjct: 343 GVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 380


>gi|171463021|ref|YP_001797134.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192559|gb|ACB43520.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 394

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 205/337 (60%), Positives = 260/337 (77%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           RV   DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP E+ M  D+ALWK  NGLT
Sbjct: 58  RVKAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMNRDIALWKDPNGLT 117

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQYLLRQAFEEA+H+H +QYI+
Sbjct: 118 EDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 177

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLD+ E+FN Y E+ SI AK  + + Y   L++P+F TGT +ADQ  L+ L VF  V
Sbjct: 178 ESLGLDQSEIFNAYHEIDSIRAKDEFLIPYIDVLTNPNFKTGTLEADQTLLRSLIVFACV 237

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL++GR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW  
Sbjct: 238 MEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWIS 297

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            F+ + +++  +A  LE  YA +TMP+G +GLNAP  +  +++I NRRC QIGL+ +F  
Sbjct: 298 AFKDEIKSIFEKAVELEYRYAEDTMPRGVLGLNAPMFKGCLRYICNRRCLQIGLDAMFPN 357

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 358 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 394


>gi|284032753|ref|YP_003382684.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836]
 gi|283812046|gb|ADB33885.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836]
          Length = 354

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 259/353 (73%), Positives = 287/353 (81%), Gaps = 4/353 (1%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            T   PI  G  RV V DK M+NAR+DVNQLLPLKY WAW+KYL+ACNNHWMPTEV MQ 
Sbjct: 2   TTTTPPIAVGATRVEVADKAMINARADVNQLLPLKYQWAWDKYLAACNNHWMPTEVSMQA 61

Query: 64  DLALWKS----KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
           D+ALW+     K+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR LSNPECRQYLLR
Sbjct: 62  DIALWRRPAGAKDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLSNPECRQYLLR 121

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAFEEAVH+HTFQYI TSLGLDEGELFNMYREVPSI AK  WAL+YT+ L+   F TGT 
Sbjct: 122 QAFEEAVHTHTFQYICTSLGLDEGELFNMYREVPSIAAKDAWALKYTRHLTDGDFRTGTP 181

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +AD +FL+DL  FYVVFEGMWFYTGFAQIL LGR NKMVGIAEQYQYI+RDESLHLNFGI
Sbjct: 182 EADTDFLRDLIAFYVVFEGMWFYTGFAQILVLGRRNKMVGIAEQYQYILRDESLHLNFGI 241

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           D INQIK+ENPHLWT  FQ + R ML EA  LE+AY   T+P G +GL A  CEQYM FI
Sbjct: 242 DCINQIKLENPHLWTPAFQAEVRRMLTEACELEVAYGRATLPNGMLGLTAELCEQYMHFI 301

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +RR  Q+GL PLF  T NPF WMSEV+DLKKEKNFFETRV EYQ G  L WD
Sbjct: 302 TDRRAEQLGLAPLFGETRNPFGWMSEVMDLKKEKNFFETRVIEYQSGGGLSWD 354


>gi|257055668|ref|YP_003133500.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis
           DSM 43017]
 gi|256585540|gb|ACU96673.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis
           DSM 43017]
          Length = 349

 Score =  325 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 261/343 (76%), Positives = 299/343 (87%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +  G  RVNVDDK M+NAR+DVNQLLP+KYGWAWEKYL+ C+NHWMPTEV MQ D+ALWK
Sbjct: 7   LDFGAARVNVDDKAMINARADVNQLLPMKYGWAWEKYLAGCDNHWMPTEVSMQADIALWK 66

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
           S +GLTDDERLM+KRNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQAFEEAVH+H
Sbjct: 67  SPDGLTDDERLMLKRNLGFFATAESLVANNLVLAVYRHLTNPECRQYLLRQAFEEAVHTH 126

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
           TFQYI  SLGLDEGELFN YREVPSI  K +WAL+YT+ L  P+FTTGT +ADQEFL+DL
Sbjct: 127 TFQYICVSLGLDEGELFNAYREVPSIANKDSWALRYTRNLEDPNFTTGTMEADQEFLRDL 186

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
             FYVVFEGMWFYTGFAQ+LSLGR NKMVGIAEQYQYI+RDES+HLNFG+D INQIK EN
Sbjct: 187 VAFYVVFEGMWFYTGFAQVLSLGRRNKMVGIAEQYQYILRDESIHLNFGVDCINQIKAEN 246

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           PHLWT EFQQ+ R ML EA  LE+AYAH+TMP+  +GL+A  CEQYM FI +RR  Q+GL
Sbjct: 247 PHLWTPEFQQQVRDMLVEACELEVAYAHDTMPRPMLGLSAELCEQYMHFITDRRAAQLGL 306

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +P+F   ENPFPWMSEVIDL+KEKNFFETRVT+Y+ GA L WD
Sbjct: 307 DPVFGERENPFPWMSEVIDLRKEKNFFETRVTDYRSGAALAWD 349


>gi|302877617|ref|YP_003846181.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans
           ES-2]
 gi|302580406|gb|ADL54417.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans
           ES-2]
          Length = 365

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 215/337 (63%), Positives = 271/337 (80%), Gaps = 1/337 (0%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R+ V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP EV M  D+ALWKS + L+
Sbjct: 30  RIRVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEVNMTADIALWKS-DKLS 88

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           DDER +IKRNLGFF +++SL ANNIVL  YRH++NPECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 89  DDERRLIKRNLGFFTTADSLAANNIVLGSYRHITNPECRQFLLRQAFEEAIHTHAYQYIV 148

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGLDEGE+FNMY EVPSI  K  + L Y   L++P F TGT +ADQ  L+ L VF  +
Sbjct: 149 ESLGLDEGEIFNMYHEVPSIRNKDEFLLPYIDVLTNPEFKTGTPEADQALLRSLIVFACI 208

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+HLNFG+D+INQIK+ENPHLWT 
Sbjct: 209 MEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHLNFGVDLINQIKMENPHLWTA 268

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            F+++ R ++ +   LE AYA +TMP+G +GLNA   ++Y++FIANRRC QIG++ L++ 
Sbjct: 269 AFREEIRGLMQKGVELEYAYAEDTMPRGILGLNATMFKEYLRFIANRRCQQIGVDILYQG 328

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             NPFPWMSE+IDLKKEKNFFE+RVTEYQ G  L WD
Sbjct: 329 ATNPFPWMSEMIDLKKEKNFFESRVTEYQTGGTLSWD 365


>gi|264680215|ref|YP_003280125.1| ribonucleotide reductase [Comamonas testosteroni CNB-2]
 gi|262210731|gb|ACY34829.1| ribonucleotide reductase [Comamonas testosteroni CNB-2]
          Length = 336

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 206/336 (61%), Positives = 259/336 (77%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +N  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NGLT+
Sbjct: 1   MNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLTE 60

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DER ++KRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H +QYI+ 
Sbjct: 61  DERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIVE 120

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
           SLGLDE E+FN Y EV SI  K  + + + + +  P+F TGT + DQ  L+ L VF  + 
Sbjct: 121 SLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIVFACLM 180

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT E
Sbjct: 181 EGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTAE 240

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           F+Q+   +  +A  LE  YA +TMP+G +G+NA   + Y+++IANRR  QIGLE LF   
Sbjct: 241 FKQEITELFQKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEELFPGE 300

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L WD
Sbjct: 301 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 336


>gi|294339031|emb|CAZ87378.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside
           diphosphate reductase, beta subunit) [Thiomonas sp. 3As]
          Length = 410

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 207/343 (60%), Positives = 263/343 (76%), Gaps = 4/343 (1%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
             RV  +DKR++N   DVNQL+P KY WAW+KYL++C NHWMP EV M  D+A+WK  NG
Sbjct: 68  TARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEVNMSRDIAMWKDPNG 127

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LTDDERL+IKRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H +QY
Sbjct: 128 LTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQY 187

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT----GTKDADQEFLQDL 189
           I+ S+GLDE E+FN Y E+ SI  K  + + +  TL++P F T    G++  DQE L+ +
Sbjct: 188 IVESIGLDESEIFNSYHEITSIREKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELLRSI 247

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            VF  + EG++FY GF QILS+GR NKM G AEQYQYI+RDES+H NFGID++NQIK+EN
Sbjct: 248 IVFACLMEGLFFYVGFTQILSMGRQNKMTGAAEQYQYILRDESMHTNFGIDLVNQIKLEN 307

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           PHLWT EF+++   + H+A  LE  YA +TMP+G +GLNA   + Y++FIANRR  QIGL
Sbjct: 308 PHLWTPEFKRELTGLFHQAVELEYRYAEDTMPRGVLGLNASMFKGYLRFIANRRAVQIGL 367

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           + +F   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 368 DAIFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWE 410


>gi|296135014|ref|YP_003642256.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12]
 gi|295795136|gb|ADG29926.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12]
          Length = 402

 Score =  319 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 206/343 (60%), Positives = 263/343 (76%), Gaps = 4/343 (1%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
             RV  +DKR++N   DVNQL+P KY WAW+KYL++C NHWMP E+ M  D+A+WK  NG
Sbjct: 60  TARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEINMSRDIAMWKDPNG 119

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LTDDERL+IKRNLGFF +++SL ANNIVL  YRH++NPECRQYLLRQAFEEA+H+H +QY
Sbjct: 120 LTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQY 179

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT----GTKDADQEFLQDL 189
           I+ S+GLDE E+FN Y E+ SI  K  + + +  TL++P F T    G++  DQE L+ +
Sbjct: 180 IVESIGLDESEIFNSYHEIASIRDKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELLRSI 239

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            VF  + EG++FY GF QILS+GR NKM G AEQYQYI+RDES+H NFGID++NQIK+EN
Sbjct: 240 IVFACLMEGLFFYVGFTQILSMGRQNKMTGAAEQYQYILRDESMHTNFGIDLVNQIKLEN 299

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           PHLWT EF+++   + H+A  LE  YA +TMP+G +GLNA   + Y++FIANRR  QIGL
Sbjct: 300 PHLWTPEFKRELTGLFHQAVELEYRYAEDTMPRGVLGLNASMFKGYLRFIANRRAVQIGL 359

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           + +F   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L W+
Sbjct: 360 DAIFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWE 402


>gi|268316001|ref|YP_003289720.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM
           4252]
 gi|262333535|gb|ACY47332.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM
           4252]
          Length = 347

 Score =  309 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 207/341 (60%), Positives = 271/341 (79%), Gaps = 3/341 (0%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           G +R+ V+DKR++N    DVNQL+P+KY WAWE YL+ C NHWMP+E+PM  D+ LW+S 
Sbjct: 8   GSRRIRVEDKRLINCHEVDVNQLMPIKYAWAWEHYLNGCKNHWMPSEIPMARDIELWRS- 66

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           + LTDDERL+I RNLGFFA++ESLV NNIVLAI+RH++NPECRQYLLRQAFEEA+H+H F
Sbjct: 67  DKLTDDERLVILRNLGFFATAESLVGNNIVLAIFRHVTNPECRQYLLRQAFEEAIHTHAF 126

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
            YI+ SLGLDEGE+FNMYRE+P++  K  + ++ T+ +  P FTT T +  Q FL++L  
Sbjct: 127 LYIVESLGLDEGEVFNMYREIPAVARKDEFEMELTREVLRPDFTTATVEGAQAFLKNLIG 186

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           +YV+ EG++FY+GFA ILS  R NKM GI EQ+QYI+RDE++HLNFGID+IN IK ENP 
Sbjct: 187 YYVIMEGIFFYSGFAMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIKAENPE 246

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           LWT EFQ++ + ++ EA  LE+AYA++ +P+G +GL AP   +Y+Q+IA+RR  +IGL+ 
Sbjct: 247 LWTPEFQREVQQLIEEAVELEVAYAYDCLPRGVLGLTAPMFREYVQYIADRRLERIGLKA 306

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +  ++NPFPWMSE IDL KEKNFFETRVTEYQQ A L WD
Sbjct: 307 RYG-SKNPFPWMSETIDLLKEKNFFETRVTEYQQAAALSWD 346


>gi|325110864|ref|YP_004271932.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305]
 gi|324971132|gb|ADY61910.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305]
          Length = 353

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 198/344 (57%), Positives = 256/344 (74%), Gaps = 3/344 (0%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           + A   R    +KR++N  + DVNQL+P+KY WAWE YL+ C NHWMPTEVPM  D+ +W
Sbjct: 12  LDAPTGRFKASEKRLINCAQVDVNQLMPIKYAWAWEHYLNGCANHWMPTEVPMTKDIEVW 71

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L+DDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLLRQAFEEAVH+
Sbjct: 72  KS-NKLSDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLLRQAFEEAVHT 130

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF Y++ SLGL EGE+FNMY EVP+I  K  + ++ T  + S  FTT T +  Q FL++
Sbjct: 131 HTFLYVVDSLGLHEGEVFNMYHEVPAIARKDEFEMKLTAEVLSEDFTTETYEGRQTFLRN 190

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FYTGF  ILS  R N + GI EQ+QYI+RDE+ HLNFGID+IN IK E
Sbjct: 191 LIGYYLIMEGIFFYTGFVMILSFHRRNLLTGIGEQFQYILRDETTHLNFGIDLINGIKHE 250

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT++FQQ+   ++ EA  LEI YA + +P+G +GLN      Y+Q IA+RR  +IG
Sbjct: 251 NPDIWTEKFQQEIIDLVKEAVELEIDYARDCLPRGVLGLNGNLFRDYVQHIADRRLERIG 310

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L  L+  + NPFPWMSE +DL KEKNFFETRVTEYQ G  L WD
Sbjct: 311 LPTLYN-SSNPFPWMSETMDLAKEKNFFETRVTEYQTGGTLSWD 353


>gi|283779060|ref|YP_003369815.1| ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068]
 gi|283437513|gb|ADB15955.1| Ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068]
          Length = 357

 Score =  303 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 193/335 (57%), Positives = 257/335 (76%), Gaps = 3/335 (0%)

Query: 19  VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            ++KR++N  + DVNQL+P+KY WAWE Y + C NHWMP+EVPM  D+  W++ + LTDD
Sbjct: 25  AEEKRLINCSTVDVNQLMPIKYHWAWEHYQNGCANHWMPSEVPMGKDIETWRTGS-LTDD 83

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+L+I RNLGFF+++ESLV NN+VLAI+RH++NPECRQYLLRQAFEEA+H+HTF YI+ S
Sbjct: 84  EKLVILRNLGFFSTAESLVGNNLVLAIFRHVTNPECRQYLLRQAFEEAIHTHTFLYIVES 143

Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           LGLD+ E+FNMYRE+PSI  K  + +Q T  L  P+FTT T +  Q+FL++L  +Y++ E
Sbjct: 144 LGLDDREVFNMYREIPSIARKDAFEMQLTTGLLDPNFTTETAEGAQKFLENLIGYYLIME 203

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++FYTGF  ILS  R N+M GI EQ+QYI+RDE++HLNFGID+IN ++ ENP +WT +F
Sbjct: 204 GIFFYTGFVMILSFHRQNRMTGIGEQFQYILRDETIHLNFGIDLINGVRAENPGIWTADF 263

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           Q++   ++ EA  LE+AYA + +P+G VGLN      Y+Q IA+RR  +IGL   +  + 
Sbjct: 264 QERVIKLVREAVELEVAYAWDCLPRGIVGLNGELFRDYVQHIADRRLERIGLPTQYG-SA 322

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NPFPWMSE +DL KEKNFFETRVTEYQ  A L WD
Sbjct: 323 NPFPWMSETMDLGKEKNFFETRVTEYQSAASLAWD 357


>gi|166154172|ref|YP_001654290.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis 434/Bu]
 gi|166155047|ref|YP_001653302.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|301335416|ref|ZP_07223660.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis L2tet1]
 gi|165930160|emb|CAP03644.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis 434/Bu]
 gi|165931035|emb|CAP06598.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 346

 Score =  302 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 194/343 (56%), Positives = 259/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   ++  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +T+NPFPWMSE IDL KEKNFFETRVTEYQ  A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346


>gi|76789573|ref|YP_328659.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis A/HAR-13]
 gi|237803260|ref|YP_002888454.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis B/Jali20/OT]
 gi|237805181|ref|YP_002889335.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|255349232|ref|ZP_05381239.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis 70]
 gi|255503769|ref|ZP_05382159.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis 70s]
 gi|255507450|ref|ZP_05383089.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis D(s)2923]
 gi|76168103|gb|AAX51111.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis A/HAR-13]
 gi|231273481|emb|CAX10397.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|231274494|emb|CAX11290.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis B/Jali20/OT]
 gi|289525874|emb|CBJ15356.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis Sweden2]
 gi|296435459|gb|ADH17637.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis E/150]
 gi|296439176|gb|ADH21329.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis E/11023]
          Length = 346

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 193/343 (56%), Positives = 258/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   ++  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPGIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346


>gi|329943118|ref|ZP_08291892.1| ribonucleotide reductase, small chain family protein [Chlamydophila
           psittaci Cal10]
 gi|332287701|ref|YP_004422602.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC]
 gi|325507260|gb|ADZ18898.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC]
 gi|328814665|gb|EGF84655.1| ribonucleotide reductase, small chain family protein [Chlamydophila
           psittaci Cal10]
 gi|328914953|gb|AEB55786.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
           psittaci 6BC]
          Length = 346

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 189/343 (55%), Positives = 255/343 (74%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           ++   KRV ++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LW
Sbjct: 6   LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ +  T  +  P+F+T + +   +F+++
Sbjct: 125 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E Q +   ++ +A  LEI YA + +P+G +GL A     Y++ IA+RR  +IG
Sbjct: 245 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 305 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 346


>gi|15605563|ref|NP_220349.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis D/UW-3/CX]
 gi|255311668|ref|ZP_05354238.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis 6276]
 gi|255317969|ref|ZP_05359215.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis 6276s]
 gi|14195107|sp|O84835|RIR2_CHLTR RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|51247460|pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide
           Reductase From Chlamydia Trachomatis
 gi|3329298|gb|AAC68425.1| Ribonucleoside Reductase, Small Chain [Chlamydia trachomatis
           D/UW-3/CX]
 gi|296436383|gb|ADH18557.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis G/9768]
 gi|296437314|gb|ADH19484.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis G/11222]
 gi|296438242|gb|ADH20403.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis G/11074]
 gi|297140743|gb|ADH97501.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           trachomatis G/9301]
 gi|297748957|gb|ADI51503.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis D-EC]
 gi|297749837|gb|ADI52515.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia
           trachomatis D-LC]
          Length = 346

 Score =  300 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 193/343 (56%), Positives = 258/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   ++  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346


>gi|112489977|pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide
           Reductase R2 From Chlamydia Trachomatis
          Length = 346

 Score =  300 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 192/343 (55%), Positives = 258/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HT+ YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTYLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   ++  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346


>gi|62185356|ref|YP_220141.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           abortus S26/3]
 gi|62148423|emb|CAH64191.1| putative ibonucleoside reductase small subunit [Chlamydophila
           abortus S26/3]
          Length = 349

 Score =  300 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 188/343 (54%), Positives = 254/343 (74%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           ++   KRV ++ KR++N    DVNQL+P+KY WAWE Y++ C N W+PTEVPM  D+ LW
Sbjct: 9   LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYVNGCANTWLPTEVPMARDIELW 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 69  KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ +  T  +  P+F+T + +   +F+++
Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 187

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E Q +   ++ +A  LEI YA + +P+G +GL A     Y++ IA+RR  +IG
Sbjct: 248 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 307

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 308 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 349


>gi|313848275|emb|CBY17276.1| putative ibonucleoside reductase small subunit [Chlamydophila
           psittaci RD1]
          Length = 349

 Score =  300 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 189/343 (55%), Positives = 255/343 (74%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           ++   KRV ++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LW
Sbjct: 9   LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 69  KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ +  T  +  P+F+T + +   +F+++
Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 187

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E Q +   ++ +A  LEI YA + +P+G +GL A     Y++ IA+RR  +IG
Sbjct: 248 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 307

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ  A L W
Sbjct: 308 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 349


>gi|29840533|ref|NP_829639.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           caviae GPIC]
 gi|29834882|gb|AAP05517.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
           caviae GPIC]
          Length = 346

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 188/341 (55%), Positives = 257/341 (75%), Gaps = 3/341 (0%)

Query: 12  AGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              KRV ++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LWKS
Sbjct: 8   GKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS 67

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HT
Sbjct: 68  ND-LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHT 126

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           F YI  SLGLDEGE+FN Y E  +I AK ++ +  T  + +P+F+T + +  ++F+++L 
Sbjct: 127 FLYICESLGLDEGEVFNAYNERATIKAKDDFQMTLTVDVLNPNFSTDSVEGLRQFIKNLV 186

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
            +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP
Sbjct: 187 GYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENP 246

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            +W++E Q +   ++ +A  LEI YA + +P+G +GL +     Y++ IA+RR  +IGL+
Sbjct: 247 EVWSQELQDEIIALIQKAVDLEIEYAKDCLPRGILGLKSSMFIDYVRHIADRRLERIGLK 306

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           P++ Y++NPFPWMSE IDL KEKNFFETRVTEYQ    L W
Sbjct: 307 PIY-YSKNPFPWMSETIDLNKEKNFFETRVTEYQTSGNLSW 346


>gi|15834835|ref|NP_296594.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           muridarum Nigg]
 gi|270285001|ref|ZP_06194395.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           muridarum Nigg]
 gi|270289024|ref|ZP_06195326.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           muridarum Weiss]
 gi|301336399|ref|ZP_07224601.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
           muridarum MopnTet14]
 gi|14195147|sp|Q9PL92|RIR2_CHLMU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|7190253|gb|AAF39087.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydia
           muridarum Nigg]
          Length = 346

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 196/343 (57%), Positives = 258/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTE+ M  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-NVLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  SI AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERASIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFIKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKMVGI EQYQYI+RDE++HLNFG+D+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMVGIGEQYQYILRDETIHLNFGVDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   M+  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 245 NPEIWTTELQQEIIEMIQRAVDLEIDYARDCLPRGILGLRASMFIDYVQHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ +T+NPFPWMSE IDL KEKNFFETRVTEYQ  A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346


>gi|89898045|ref|YP_515155.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           felis Fe/C-56]
 gi|89331417|dbj|BAE81010.1| ribonucleoside-diphosphate reductase beta chain [Chlamydophila
           felis Fe/C-56]
          Length = 349

 Score =  299 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 188/343 (54%), Positives = 258/343 (75%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           ++   KRV ++ KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LW
Sbjct: 9   LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIDLW 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS N L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 69  KS-NELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEVRQYLLRQAFEEAVHT 127

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ +  T+ +  P+F+T T +  ++F+++
Sbjct: 128 HTFLYICESLGLDESEVFNAYNERATIKAKDDFQMDLTRDVLDPNFSTHTIENLRQFIKN 187

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +W+++ Q +   ++ +A  LEI YA + +P+G +GL +     Y++ IA+RR  +IG
Sbjct: 248 NPEVWSQQLQDEIVDLIQKAVDLEIEYARDCLPRGILGLRSSMFIDYVRHIADRRLERIG 307

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++  ++NPFPWMSE IDL KEKNFFETRVTEYQ  A L W
Sbjct: 308 LKPIYN-SKNPFPWMSETIDLNKEKNFFETRVTEYQTAANLNW 349


>gi|33242353|ref|NP_877294.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           pneumoniae TW-183]
 gi|33236864|gb|AAP98951.1| ribonucleoside reductase small chain [Chlamydophila pneumoniae
           TW-183]
          Length = 365

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 187/343 (54%), Positives = 252/343 (73%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +    KRV V  K ++N    DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LW
Sbjct: 25  LDGKLKRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 84

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 85  KS-DELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 143

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDEGE+FN Y E  SI AK ++ +  T  +  P+F+  + +   +F+++
Sbjct: 144 HTFLYICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNFSVQSSEGLGQFIKN 203

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 204 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 263

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E Q++   ++ +A  LEI YA + +P+G +GL +     Y++ IA+RR  +IG
Sbjct: 264 NPEVWTTELQEEIVALIEKAVELEIEYAKDCLPRGILGLRSSMFIDYVRHIADRRLERIG 323

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ ++ NPFPWMSE +DL KEKNFFETRVTEYQ    L W
Sbjct: 324 LKPIY-HSRNPFPWMSETMDLNKEKNFFETRVTEYQTAGNLSW 365


>gi|269839640|ref|YP_003324332.1| ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791370|gb|ACZ43510.1| Ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 353

 Score =  297 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 198/344 (57%), Positives = 254/344 (73%), Gaps = 3/344 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +    +R+ V+DKR++N ++ DVNQL PLKY WAWE YL+ C NHWMPTEVPM  D+ LW
Sbjct: 12  MYDLSQRIRVEDKRLINCKAVDVNQLWPLKYAWAWEHYLNGCANHWMPTEVPMHKDIELW 71

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +S N LT DERL+I RNLGFF++ ESLV NNIVLAI++H++NPE RQYLLRQAFEEA+H+
Sbjct: 72  RS-NALTPDERLVIMRNLGFFSTGESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAIHT 130

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           H F YI+ SLGLD  E+FNMYREV SI  K  + +  T+ +  P FTT T +  Q+F+++
Sbjct: 131 HAFHYIVESLGLDGREVFNMYREVDSIKGKDEFVMSLTERVLDPDFTTETLEGIQDFIRN 190

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  FYV+ EG++FY+GF  ILS  R N+M GI EQ+QYI+RDE++HLNFGID+IN IK E
Sbjct: 191 LVGFYVIMEGIFFYSGFVMILSFHRQNRMTGIGEQFQYILRDETVHLNFGIDLINTIKEE 250

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP  WT+E ++    M+ +A   EIAYA E +P G +GLNA    +Y+Q+IA+RR  +I 
Sbjct: 251 NPEAWTEELRRDLVGMIRQAVEYEIAYARECLPNGVLGLNADLFREYVQYIADRRLERIE 310

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           L   +  + NPFPWMSE +DL KEKNFFETRVTEYQ    L WD
Sbjct: 311 LPVQY-RSRNPFPWMSETMDLPKEKNFFETRVTEYQNAGTLVWD 353


>gi|330443801|ref|YP_004376787.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydophila
           pecorum E58]
 gi|328806911|gb|AEB41084.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
           pecorum E58]
          Length = 346

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 187/338 (55%), Positives = 255/338 (75%), Gaps = 3/338 (0%)

Query: 15  KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           KRV++++KR++N    DVNQL+P+KY WAWE YL+ C N+W+PTE+ M  D+ LWKS NG
Sbjct: 11  KRVHINNKRLVNCSQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMARDIELWKS-NG 69

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ TF Y
Sbjct: 70  LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTQTFLY 129

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I  SL LDE E+FN Y E  SI AK ++ +  T  +  P+F+T + +  ++F+++L  +Y
Sbjct: 130 ICESLSLDEAEVFNAYNERESIKAKDDFQMTLTVDVLDPNFSTDSIEGLRKFIKNLVGYY 189

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W
Sbjct: 190 LIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 249

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           +KE Q++   ++  A  LEI YA + +PKG +GL +     Y++ IA+RR  +IGL+P++
Sbjct: 250 SKELQEEIIALIETAVGLEIDYAKDCLPKGILGLKSSMFIDYVRHIADRRLERIGLKPIY 309

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
             ++NPFPWMSE +DL KEKNFFETRVTEYQ  A L W
Sbjct: 310 N-SKNPFPWMSETMDLNKEKNFFETRVTEYQTAASLSW 346


>gi|149173739|ref|ZP_01852368.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces
           maris DSM 8797]
 gi|148847269|gb|EDL61603.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces
           maris DSM 8797]
          Length = 359

 Score =  296 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 198/356 (55%), Positives = 248/356 (69%), Gaps = 7/356 (1%)

Query: 2   ANNTGLSPIQ----AGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMP 56
           AN    +P+         R   D KR++N    DVNQL+PLKY WAWE YL+ C NHWMP
Sbjct: 6   ANTNSKTPVSPVGDTPTGRFKADKKRLINCSQVDVNQLMPLKYHWAWEHYLNGCANHWMP 65

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
           TEV M  D+  W+S + L++ ER +I RNLGFFA++ESLVANNIVLAI++H++N ECRQY
Sbjct: 66  TEVGMTKDIETWRS-SKLSEGERFVIMRNLGFFATAESLVANNIVLAIFKHVTNAECRQY 124

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
           LLRQAFEEAVHSHTF YI+ SLGL+E E+FNMY EVP+I  K    ++ T  +    FTT
Sbjct: 125 LLRQAFEEAVHSHTFLYIVESLGLNESEVFNMYHEVPAIAKKDQLEMELTSEILDHDFTT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            T +  Q FL++L  +Y++ EG++FYTGF  +LS  R N M GI EQ+QYI+RDE++HLN
Sbjct: 185 DTFEGAQAFLKNLIGYYLIMEGLFFYTGFVMVLSFHRRNMMTGIGEQFQYILRDETIHLN 244

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
           FGID+IN IK ENP LWT EFQQ     +  A  LEI YA + +P G +GLN     +Y+
Sbjct: 245 FGIDLINGIKQENPDLWTPEFQQLIIDRMKYAAELEIEYAKDCLPTGILGLNGELFREYV 304

Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           Q IA+RR  +IGL   +  + NPFPWMSE +DL KEKNFFETRVTEYQ    L WD
Sbjct: 305 QHIADRRLERIGLPAQYG-SANPFPWMSETMDLSKEKNFFETRVTEYQSSGSLNWD 359


>gi|15618893|ref|NP_225179.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           pneumoniae CWL029]
 gi|15836516|ref|NP_301040.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           pneumoniae J138]
 gi|16752043|ref|NP_445409.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
           pneumoniae AR39]
 gi|14195165|sp|Q9Z6S4|RIR2_CHLPN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|4377313|gb|AAD19122.1| Ribonucleoside Reductase, Small Chain [Chlamydophila pneumoniae
           CWL029]
 gi|7189783|gb|AAF38660.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
           pneumoniae AR39]
 gi|8979358|dbj|BAA99192.1| ribonucleoside reductase, small chain [Chlamydophila pneumoniae
           J138]
 gi|269302786|gb|ACZ32886.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
           pneumoniae LPCoLN]
          Length = 346

 Score =  296 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 187/343 (54%), Positives = 252/343 (73%), Gaps = 3/343 (0%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +    KRV V  K ++N    DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LW
Sbjct: 6   LDGKLKRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDEGE+FN Y E  SI AK ++ +  T  +  P+F+  + +   +F+++
Sbjct: 125 HTFLYICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNFSVQSSEGLGQFIKN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 244

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E Q++   ++ +A  LEI YA + +P+G +GL +     Y++ IA+RR  +IG
Sbjct: 245 NPEVWTTELQEEIVALIEKAVELEIEYAKDCLPRGILGLRSSMFIDYVRHIADRRLERIG 304

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           L+P++ ++ NPFPWMSE +DL KEKNFFETRVTEYQ    L W
Sbjct: 305 LKPIY-HSRNPFPWMSETMDLNKEKNFFETRVTEYQTAGNLSW 346


>gi|298243909|ref|ZP_06967716.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM
           44963]
 gi|297556963|gb|EFH90827.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM
           44963]
          Length = 361

 Score =  292 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 194/341 (56%), Positives = 251/341 (73%), Gaps = 3/341 (0%)

Query: 13  GEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
                    KR++N    DVNQL+PLKY WAWE YL+ C NHWMPTEVPM  D+  W+S 
Sbjct: 23  PASEQQAQKKRLINGWHVDVNQLMPLKYRWAWEHYLNGCANHWMPTEVPMTKDIETWRS- 81

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           N LT  ERL+I RNLGFFA++ESLV NN+VLAI++H++N ECRQYLLRQAFEEA+H+HTF
Sbjct: 82  NKLTAGERLVIMRNLGFFATAESLVGNNLVLAIFKHITNAECRQYLLRQAFEEAIHTHTF 141

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
            YI+ SLGL E E+FNMY E+PSI  K  + +Q T  +  P F+T T +  Q+FLQ+L  
Sbjct: 142 LYIVESLGLSEHEVFNMYHEIPSIKEKDEFEMQLTSAVLDPDFSTETFEGMQKFLQNLIG 201

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           +Y++ EG++FY+GF  +LS  R N M G+ EQ+QYI+RDE++HLNFGID+IN IK ENP 
Sbjct: 202 YYIIMEGIFFYSGFVMMLSFHRRNLMTGVGEQFQYILRDETIHLNFGIDLINGIKAENPE 261

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           LWT EFQ     ++  A  LEIAYA++ +P G +GLNA S   Y+Q +A+RR  +IGL P
Sbjct: 262 LWTTEFQAHIYDLIKRAVELEIAYAYDCLPNGILGLNAESFRSYVQHVADRRLERIGLAP 321

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +F ++ +PFPWMSE +DL KEKNFFETRVTEYQ  + L+W+
Sbjct: 322 IF-HSSHPFPWMSETMDLSKEKNFFETRVTEYQAASTLEWE 361


>gi|159465291|ref|XP_001690856.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas
           reinhardtii]
 gi|158279542|gb|EDP05302.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas
           reinhardtii]
          Length = 493

 Score =  292 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 151/345 (43%), Gaps = 29/345 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
            P      R  + D+ +L    +   L P+KY   WE Y     + W   EV    DL  
Sbjct: 153 EPSAEVASRSTLLDEDLLRENPNRFTLFPIKYPDLWEFYKQGVASFWTVEEVDFTGDLID 212

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W     L  +E+  IK  L FFA+S+ +V  N+       +  PE R +   Q   E VH
Sbjct: 213 WH---RLKPEEQRFIKYVLAFFAASDGIVMENLAARFMSDIQVPEARAFYGFQIAMENVH 269

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  ++     +  E   LF+    +P++  KA WA+++  +                
Sbjct: 270 SEMYSVLLDHYVREPEERNQLFDAIHTIPTVAKKAEWAMRWISS-------------SNV 316

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F + L   +   EG+ F   F  I  L +   M G++     I RDE LH +F   + + 
Sbjct: 317 FAERLVG-FACVEGIHFSGSFCSIFWLKKRCLMPGLSFSNVLISRDEGLHCDFACCLYSH 375

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +K           +++   ++ EA  LE  +  E +    +G+NA    QY++F+A+R  
Sbjct: 376 LKNRLS-------RERVLQIVDEAVQLEDEFCTEALSCELLGMNADLMRQYIRFVADRLL 428

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             +G E  +  T NPF WM E+I L+ + NFFE RV EYQ+   +
Sbjct: 429 VSLGYEKHYN-TRNPFDWM-EMISLQGKANFFERRVGEYQRAGVM 471


>gi|159899093|ref|YP_001545340.1| ribonucleotide-diphosphate reductase subunit beta [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892132|gb|ABX05212.1| Ribonucleoside-diphosphate reductase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 342

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 192/339 (56%), Positives = 253/339 (74%), Gaps = 3/339 (0%)

Query: 15  KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            R N  DKR++N    DVNQL+PL+YGWAWE YL+ C NHWMP EV M  D+A+W+S + 
Sbjct: 6   GRFNASDKRLINCNQVDVNQLMPLRYGWAWEHYLNGCANHWMPNEVSMTGDIAIWRSTS- 64

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L+ DERLM+ RNLGFFA++ESLV NNIVLAI+RH++N ECRQYLLRQAFEEA+H+H F +
Sbjct: 65  LSADERLMVLRNLGFFATAESLVGNNIVLAIFRHITNAECRQYLLRQAFEEAIHTHAFLH 124

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ SLGL+E E+FNMY E+P I+ K  + +Q T  +  P F+T T    Q F+++L  +Y
Sbjct: 125 IVESLGLNEREIFNMYHEIPVISQKDQFEMQLTAAVLDPQFSTETLTGMQTFVKNLIGYY 184

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           V+ EG++FY+GFA +LSL R N + GI EQ QYI+RDE++HLNFG+D+IN IK ENP +W
Sbjct: 185 VIMEGIFFYSGFAMLLSLHRRNVLTGIGEQIQYILRDETIHLNFGVDLINGIKAENPAIW 244

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           T EFQ +   ++ ++  LE  YA E +P+G +GL+A     Y+Q+IA+RR  +IGL   +
Sbjct: 245 TNEFQAEIVQLIRQSVELEAQYAAECLPRGVMGLHAAMFRDYVQYIADRRLQRIGLAIQY 304

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ++NPFPWMSE IDL KEKNFFETRVTEYQ  A L+WD
Sbjct: 305 G-SQNPFPWMSETIDLTKEKNFFETRVTEYQSAASLEWD 342


>gi|297621807|ref|YP_003709944.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia
           chondrophila WSU 86-1044]
 gi|297377108|gb|ADI38938.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia
           chondrophila WSU 86-1044]
          Length = 344

 Score =  290 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 193/340 (56%), Positives = 255/340 (75%), Gaps = 5/340 (1%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
             R   D K+++N    DVNQLLPLKY WAWE YL+ C NHWMP+EVPM  D+  WKS +
Sbjct: 9   TGRFRSDQKKLINCSEVDVNQLLPLKYKWAWEHYLNGCANHWMPSEVPMTKDIETWKS-D 67

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            +++DERL+IKRNLGFFA++ESLVANN+VLAI++H++N ECRQYLLRQAFEEA+HSH F 
Sbjct: 68  SISEDERLLIKRNLGFFATAESLVANNLVLAIFKHVTNAECRQYLLRQAFEEALHSHAFL 127

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGL+E E+FNMYRE+ +I+ K  + +Q T+ L      T T    Q+FL++L  +
Sbjct: 128 YIVDSLGLEEQEIFNMYREISTISEKDEFEMQLTKGLIDG--ETKTLAGKQQFLKNLVGY 185

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           Y++ EG++FY+GFA +LSL R N M GI EQ+QYI+RDE++HLNFGID+IN IK ENP +
Sbjct: 186 YIIMEGIFFYSGFAMVLSLHRRNIMPGIGEQFQYILRDETIHLNFGIDLINGIKAENPEI 245

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           W ++   +   ++ +A  LEIAYA E +P G +GLNA    +Y+Q++A+RR  +IGL  +
Sbjct: 246 WNEDLTDEINGLVQQAVELEIAYAKECLPHGVLGLNAGLFVEYVQYVADRRLERIGLSAI 305

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +K + NPFPWMSE +DL KEKNFFETRVTEYQ  A L WD
Sbjct: 306 YK-SSNPFPWMSETMDLTKEKNFFETRVTEYQSAAVLSWD 344


>gi|330921941|ref|XP_003299625.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1]
 gi|311326599|gb|EFQ92269.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1]
          Length = 410

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 101/351 (28%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A+   + P  A   +    D+ +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 52  ADAEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 111

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W  +  L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q 
Sbjct: 112 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYGFQI 169

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS T+  +I +   +  +   LFN    +P I  KA+WAL++             
Sbjct: 170 MMENVHSETYSLLIDTYISEPRQRKYLFNAIDNIPCIRKKADWALRWI------------ 217

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  F   L  F  V EG++F   FA I  L +   M G+    + I RDE +H +F 
Sbjct: 218 SDKNSTFANRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFA 276

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + +         +  ++  R ++ EA  +E  +  + +P   +G+NA    QY++F
Sbjct: 277 CLLFSLLNN-------RPSKESVRAIITEAVEIEQEFLSDALPCALLGMNATLMCQYIEF 329

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +A+R    +G   ++  T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 330 VADRLLLALGNTKVYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 378


>gi|189219089|ref|YP_001939730.1| ribonucleotide-diphosphate reductase subunit beta
           [Methylacidiphilum infernorum V4]
 gi|189185947|gb|ACD83132.1| Ribonucleotide reductase, beta subunit [Methylacidiphilum
           infernorum V4]
          Length = 361

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 194/339 (57%), Positives = 262/339 (77%), Gaps = 3/339 (0%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +KR+NV++KR++N ++ DVNQL+PLKY WAWE YL+ C N+W+P+EVPMQ D+ LWKS N
Sbjct: 25  KKRINVEEKRLINCKAVDVNQLMPLKYKWAWEHYLNGCANNWLPSEVPMQRDVELWKS-N 83

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L++DERL+I RNLGFFA+ ESLV NNIVLAI++ ++N E RQYLLRQA+EEAVH+H F 
Sbjct: 84  RLSNDERLVIMRNLGFFATGESLVGNNIVLAIFKFVTNAEARQYLLRQAYEEAVHTHAFL 143

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI+ SLGLDE E+FNMY EV SI+ K  + +  T+ +    F T + +  Q+F+++L  F
Sbjct: 144 YIVESLGLDEREVFNMYHEVNSISNKDQFEMTLTEDILREGFNTESVENIQKFVKNLVGF 203

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           YV+ EG++FY+GFA ILS  R NKM GI EQ+QYI+RDE++HLNFGID+IN I+ ENP +
Sbjct: 204 YVIMEGIFFYSGFAMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIREENPEI 263

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT  FQ++   M+ E+  LE AYA + +P+G +GLN+   + Y+++IA+RR  +IG +  
Sbjct: 264 WTAGFQKEIEEMIDESVRLEYAYARDCLPRGILGLNSALFKDYVEYIADRRLERIGFKAK 323

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           +  ++NPFPWMSEV+DL KEKNFFETRVTEYQ GA L W
Sbjct: 324 YG-SKNPFPWMSEVMDLVKEKNFFETRVTEYQSGAVLNW 361


>gi|225684487|gb|EEH22771.1| ribonucleoside-diphosphate reductase small chain A
           [Paracoccidioides brasiliensis Pb03]
          Length = 413

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/356 (27%), Positives = 165/356 (46%), Gaps = 32/356 (8%)

Query: 2   ANNTGLSPIQ-----AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56
           ++ T + P++         +    D+ +L        L PLKY   W+ Y  A  + W  
Sbjct: 54  SDATPVKPVEQEKKIGSTAKDLEADEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTA 113

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
            E+ +  DL  W   N L DDER  I   L FFA+S+ +V  N+V      +  PE R +
Sbjct: 114 EEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCF 171

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173
              Q   E +HS T+  +I +   +  +   LF+    +P I  KA+WA+++ +      
Sbjct: 172 YGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIE------ 225

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                 D +  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE L
Sbjct: 226 ------DKESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 278

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H +F   + + ++        +   +  + ++ EA  +E  +  + +P   +G+NA    
Sbjct: 279 HTDFACLLFSHLR-------HRPSPEAVQKIITEAVAIEQEFLTDALPCALLGMNAKLMC 331

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           QY++F+A+R    +G + ++  + NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 332 QYIEFVADRLLVALGNKKVYN-STNPFDFMD-NISLTGKTNFFEKRVGDYQKAGVM 385


>gi|298713498|emb|CBJ27053.1| Ribonucleoside-diphosphate reductase small chain [Ectocarpus
           siliculosus]
          Length = 504

 Score =  285 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 155/328 (47%), Gaps = 29/328 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +  A      L P+K+   W+ Y  A  + W   EV +  D   W+    LT +E+  
Sbjct: 181 EPICRADPSRFVLFPIKHPELWDMYKKAKASFWTVEEVDLSQDSRDWE---ALTGNEQHF 237

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+V    + +  PE R +   Q   E++H   +  ++ +   D
Sbjct: 238 ISMVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKD 297

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LFN Y ++P +  KA+WA+++  +             D  F + L  F  V EG
Sbjct: 298 KQERDNLFNAYNDIPCVKQKADWAMRWIGS-------------DATFAERLVAFAAV-EG 343

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   +   ++        K  +
Sbjct: 344 VFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACQLFASLEN-------KPSR 396

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++ EA  +E ++    +P   +G+NA    QY++F+A+R    +G    +  T+N
Sbjct: 397 ETVMAIVREAVEVEKSFICGALPCSLIGMNAGVMSQYIEFVADRLLGSLGYGKSYG-TQN 455

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           PF WM  +I L+ + NFFE RV EYQ+ 
Sbjct: 456 PFDWMD-LISLQGKTNFFEKRVGEYQKA 482


>gi|189199548|ref|XP_001936111.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187983210|gb|EDU48698.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 410

 Score =  285 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 101/351 (28%), Positives = 160/351 (45%), Gaps = 27/351 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A++  + P  A   +    D+ +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 52  ADDEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 111

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W  +  L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q 
Sbjct: 112 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYGFQI 169

Query: 122 FEEAVHSHTFQYIITSLG---LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS T+  +I +          LFN    +P I  KA+WAL++             
Sbjct: 170 MMENVHSETYSLLIDTYISDTRQRKYLFNAIENIPCIRKKADWALRWI------------ 217

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  F   L  F  V EG++F   FA I  L +   M G+    + I RDE +H +F 
Sbjct: 218 SDKNSTFANRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFA 276

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + +     +       ++ R ++ EA  +E  +  + +P   +G+NA    QY++F
Sbjct: 277 CLLFSLLNNRPSN-------EEVRAIITEAVEIEQEFLSDALPCALLGMNATLMCQYIEF 329

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +A+R    +G   ++  T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 330 VADRLLLALGNTKVYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 378


>gi|297668213|ref|XP_002812343.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Pongo abelii]
          Length = 449

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 95/337 (28%), Positives = 160/337 (47%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
            +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  
Sbjct: 125 PDVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKP 181

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I 
Sbjct: 182 EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLID 241

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LFN    +P +  KA+WAL++              D +  + + +  F 
Sbjct: 242 TYIKDPKEREFLFNAIETLPCVKKKADWALRWI------------GDKEATYGERVVAFA 289

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++F   FA I  L +   M G+    + I RDE LH +F   +   +        
Sbjct: 290 AV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------- 341

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F
Sbjct: 342 HKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVF 401

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 402 RV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 436


>gi|325181522|emb|CCA15972.1| ribonucleosidediphosphate reductase small chain put [Albugo
           laibachii Nc14]
          Length = 1611

 Score =  284 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/352 (25%), Positives = 163/352 (46%), Gaps = 28/352 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           ++++  ++P +  E    +  +  L    +   L P++    W+ Y  A  + W   E+ 
Sbjct: 49  LSDSNSITPFKEKEMNGQLLPEPFLRENPNRFVLFPIQQSEIWDMYKKAEASFWTAEEID 108

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D+  W     ++D+ER  IK  L FFA+S+ +V  N+ +     +  PE R +   Q
Sbjct: 109 LVHDMNDW---LNISDNERHFIKHVLAFFAASDGIVNENLAMNFSSEVQIPEARCFYGFQ 165

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS  +  +I +   D  E   L      +P +T KA WAL++            
Sbjct: 166 IAIENIHSEVYSLLIDTYIKDPTEKQHLLCAIETIPCVTNKAQWALKW------------ 213

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
             D       +  V +   EG++F   F  I  L +   M G+    + I RDE LH +F
Sbjct: 214 -CDPKCASFAERVVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLCFSNELISRDEGLHCDF 272

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + +++  + P       +     ++ +A ++E  +  +++P   +G+N+    QY++
Sbjct: 273 ACLMYSKLVNKLP-------EASIHAIISDAVVIEQEFVRDSLPVELIGMNSSLMGQYIE 325

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           F+A+R  H +G+  L+ +T NPF WM  +I L+ + NFFE RV EY +   +
Sbjct: 326 FVADRLLHALGVSKLY-HTSNPFDWMD-MISLQGKTNFFEKRVGEYAKSGTI 375


>gi|119621373|gb|EAX00968.1| hCG23833, isoform CRA_b [Homo sapiens]
 gi|119621374|gb|EAX00969.1| hCG23833, isoform CRA_b [Homo sapiens]
          Length = 449

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 95/335 (28%), Positives = 159/335 (47%), Gaps = 28/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +E
Sbjct: 127 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 183

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 184 RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 243

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LFN    +P +  KA+WAL++              D +  + + +  F  V
Sbjct: 244 IKDPKEREFLFNAIETMPCVKKKADWALRWI------------GDKEATYGERVVAFAAV 291

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +   +         K
Sbjct: 292 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HK 343

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+ 
Sbjct: 344 PSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV 403

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 404 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 436


>gi|260064013|ref|NP_001159403.1| ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Homo
           sapiens]
          Length = 449

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 95/335 (28%), Positives = 159/335 (47%), Gaps = 28/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +E
Sbjct: 127 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 183

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 184 RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 243

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LFN    +P +  KA+WAL++              D +  + + +  F  V
Sbjct: 244 IKDPKEREFLFNAIETMPCVKKKADWALRWI------------GDKEATYGERVVAFAAV 291

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +   +         K
Sbjct: 292 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HK 343

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+ 
Sbjct: 344 PSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV 403

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 404 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 436


>gi|282890382|ref|ZP_06298910.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499764|gb|EFB42055.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 350

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 201/352 (57%), Positives = 256/352 (72%), Gaps = 3/352 (0%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M      S +   E       KR+LN +  DVNQL+PLKY WAWE YL+ C+N+WMP+EV
Sbjct: 1   MEEGIMSSCLIPEEAEAAAQQKRILNCKQVDVNQLMPLKYHWAWEHYLNGCHNNWMPSEV 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
           PMQ D+ LWKS N L++DERL+I RNLGFF+++ESLV NNIVLAI++HL+N E RQYLLR
Sbjct: 61  PMQKDIELWKS-NRLSNDERLVIMRNLGFFSTAESLVGNNIVLAIFKHLTNAEARQYLLR 119

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAFEEAVH+HTF YI+ SL LD+ E+F+MY  V SI AK  + ++ T+ +    FTT T 
Sbjct: 120 QAFEEAVHTHTFHYIVESLSLDQREVFDMYNAVNSIHAKDAFEMKLTEEVMQEGFTTDTP 179

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +  Q FL++L  FY++ EG++FY+GF  ILS  R N M GI EQ+QYI+RDES+HLNFGI
Sbjct: 180 EGVQTFLKNLIGFYIIMEGIFFYSGFVMILSFHRKNIMTGIGEQFQYILRDESIHLNFGI 239

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           D+IN IK ENP +WT EF+ +   M+ EA  LEI YA + +P G +GLNA     Y+ +I
Sbjct: 240 DLINTIKEENPEVWTPEFKDQIIDMVKEAVELEIQYAADCLPNGILGLNAALFRDYVGYI 299

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           A+RR  +IGL+P +  T NPFPWMSEV+DL KEKNFFETRVT+YQ GA L W
Sbjct: 300 ADRRLERIGLKPQYN-TANPFPWMSEVMDLDKEKNFFETRVTQYQSGAALVW 350


>gi|225561749|gb|EEH10029.1| ribonucleotide reductase M2 B [Ajellomyces capsulatus G186AR]
 gi|240275354|gb|EER38868.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces
           capsulatus H143]
 gi|325091193|gb|EGC44503.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces
           capsulatus H88]
          Length = 413

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 97/332 (29%), Positives = 157/332 (47%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L    +   L PLKY   W+ Y  A  + W   E+ +  DL  W   N L DDER 
Sbjct: 78  DEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 135

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+  +I +   
Sbjct: 136 FISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIK 195

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  +   LF+    +P I  KA+WA+++ +            D D  F Q L  F  V E
Sbjct: 196 EPKQRTYLFDAIETIPCIRKKADWAIRWIE------------DKDSTFAQRLVAFAAV-E 242

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + + ++        +  
Sbjct: 243 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLR-------HRPS 295

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    +G + ++  + 
Sbjct: 296 PEAVEKIITEAVTIEQEFLSDALPVALLGMNAKLMCQYIEFVADRLLVALGNKKVYN-ST 354

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 355 NPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 385


>gi|302665732|ref|XP_003024474.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517]
 gi|291188529|gb|EFE43863.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517]
          Length = 529

 Score =  282 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 156/343 (45%), Gaps = 27/343 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++    +    ++ +L        L P+KY   W+ Y  A  + W   E+ +  D+  W 
Sbjct: 186 VKPKTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 245

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L DDER  I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS 
Sbjct: 246 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 303

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I +   ++ +   LF     +P I  KA+WA+++ Q            D D  F 
Sbjct: 304 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKDSTFA 351

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + + 
Sbjct: 352 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLN 410

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   +        ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    
Sbjct: 411 -------YRPDPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 463

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 464 LGNKKFYN-TTNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 504


>gi|67515571|ref|XP_657671.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4]
 gi|40746089|gb|EAA65245.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4]
 gi|259489743|tpe|CBF90266.1| TPA: Ribonucleotide reductase [Source:UniProtKB/TrEMBL;Acc:Q9HEW8]
           [Aspergillus nidulans FGSC A4]
          Length = 406

 Score =  282 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 98/349 (28%), Positives = 164/349 (46%), Gaps = 31/349 (8%)

Query: 8   SPIQAGEKRVNVD----DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            P++  +  ++V     ++ +L        L P+KY   W+ Y  A  + W   E+ +  
Sbjct: 56  KPVEPSKAALDVKAIEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSK 115

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  W   N L +DER  I R L FFA+S+ +V  N++      +  PE R +   Q   
Sbjct: 116 DLHDWN--NRLNEDERYFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFYGFQIMI 173

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +H+ T+  +I +   +  +   LF+    +P I  KA+WA+++ Q            D
Sbjct: 174 ENIHAETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIKWIQ------------D 221

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            +  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   
Sbjct: 222 KESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACL 280

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           + + +         +  ++    ++ EA  +E  +  + +P   +G+NA    QY++F+A
Sbjct: 281 LFSHL-------NWRPSKKVVEDIIVEAVAIEKEFLTDALPCALLGMNAKLMCQYIEFVA 333

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +R    +G +  F  T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 334 DRLLVALGNKKYFNAT-NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 380


>gi|322693757|gb|EFY85606.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium
           acridum CQMa 102]
          Length = 411

 Score =  282 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 103/341 (30%), Positives = 160/341 (46%), Gaps = 27/341 (7%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   +    D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   
Sbjct: 68  APGIKAEEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 125

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           N L DDE+  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+
Sbjct: 126 NRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 185

Query: 132 QYIITSLGL---DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +          LFN    +P I  KA+WA+++ Q            D +  F Q 
Sbjct: 186 SLLIDTYIKENAQRTYLFNAIDTIPCIRKKADWAIRWIQ------------DKESTFAQR 233

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + +K  
Sbjct: 234 LVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHSHLKN- 291

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
                 +  +Q    ++ +A  +E  +  E +P   +G+N+   +QY++F+A+R    +G
Sbjct: 292 ------RASKQIIHDIITDAVAIEKEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALG 345

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            E ++K T NPF +M E I L  + NFFE RV +YQ+   L
Sbjct: 346 NEKVYK-TSNPFDFM-ENISLGGKTNFFEKRVGDYQKAGVL 384


>gi|167837963|ref|ZP_02464822.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
           thailandensis MSMB43]
          Length = 303

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 191/303 (63%), Positives = 238/303 (78%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
           C NHWMP E+ M  D+ALWK  NGLT+DER ++KRNLGFF +++SL ANNIVL  YRH++
Sbjct: 1   CANHWMPQEINMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHIT 60

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            PECRQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I AK  + + +  TL
Sbjct: 61  APECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRAKDEFLIPFIHTL 120

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           + P+FTTGT +ADQ+ L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+R
Sbjct: 121 TDPAFTTGTLEADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILR 180

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DES+H NFGID+INQIK+ENPHLWT EF+ + R +   A  LE  YA +TMP+G +GLNA
Sbjct: 181 DESMHCNFGIDLINQIKLENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNA 240

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
              + Y++FI+NRRC QIGL+PLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  L
Sbjct: 241 SMFKSYLRFISNRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGAL 300

Query: 350 KWD 352
            W+
Sbjct: 301 SWE 303


>gi|261189551|ref|XP_002621186.1| ribonucleotide reductase small subunit RnrA [Ajellomyces
           dermatitidis SLH14081]
 gi|239591422|gb|EEQ74003.1| ribonucleotide reductase small subunit RnrA [Ajellomyces
           dermatitidis SLH14081]
 gi|239613047|gb|EEQ90034.1| ribonucleotide reductase small subunit RnrA [Ajellomyces
           dermatitidis ER-3]
 gi|327356917|gb|EGE85774.1| ribonucleotide reductase M2 B [Ajellomyces dermatitidis ATCC 18188]
          Length = 413

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 163/351 (46%), Gaps = 35/351 (9%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
              TG+  ++A        ++ +L    +   L PLKY   W+ Y  A  + W   E+ +
Sbjct: 67  KALTGMKALEA--------EEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTAEEIDL 118

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   N L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q 
Sbjct: 119 SKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSSEVQVPEARCFYGFQI 176

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I +   +  +   LF+    +P I  KA+WA+++ +           
Sbjct: 177 MMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIE----------- 225

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 226 -DKESSFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 283

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + ++        +   +    ++ EA  +E  +  + +P   +G+NA    QY++F
Sbjct: 284 CLLFSHLR-------HRPSPEAVERIITEAVTIEQEFLSDALPVALLGMNAKLMCQYIEF 336

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +A+R    +G + ++  + NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 337 VADRLLVALGNKKVYN-STNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 385


>gi|260950985|ref|XP_002619789.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720]
 gi|238847361|gb|EEQ36825.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720]
          Length = 419

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/337 (29%), Positives = 157/337 (46%), Gaps = 27/337 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +    D+ +L        L P+KY   W+ Y  A  + W   E+ +  D+  WK  N +T
Sbjct: 88  KAQEKDEPLLVENKRRFVLFPIKYNEIWQMYKKAEASFWTAEEIDLSKDINDWK--NRMT 145

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           D+ER  I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I
Sbjct: 146 DNERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLI 205

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            S   D  E   LFN    +P I  KA WAL++              D +  F + L  F
Sbjct: 206 DSYIKDPKEADFLFNAIENIPCIKKKAEWALRWI------------ADDEALFAERLVAF 253

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             V EG++F   FA I  L +   M G+    + I RDE LH +F   + + +       
Sbjct: 254 AAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHLNN----- 307

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             +        ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G + +
Sbjct: 308 --RPNPAIVEKIITEAVTIEKEYFTDALPASLLGMNCDLMCQYVEFVADRLLVALGNKKV 365

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +  T NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 366 YNVT-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 400


>gi|312216546|emb|CBX96496.1| similar to ribonucleoside-diphosphate reductase subunit M2
           [Leptosphaeria maculans]
          Length = 410

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/351 (28%), Positives = 159/351 (45%), Gaps = 27/351 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            + +   P  A   R     + +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 51  EDASDHKPSTAPTIRPEEAHEPLLQENPQRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 110

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W  +  L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q 
Sbjct: 111 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQI 168

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS T+  +I +   +  +   LFN    +P I  KA+WAL++             
Sbjct: 169 MMENVHSETYSLLIDTYISEPRQRKYLFNAIDNIPCIRKKADWALRWI------------ 216

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  F   L  F  V EG++F   FA I  L +   M G+    + I RDE +H +F 
Sbjct: 217 SDKNSTFANRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFA 275

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + +        T+  ++  + ++ EA  +E  +  + +P   +G+NA    QY++F
Sbjct: 276 CLLFSLL-------NTRPSKESVQAIITEAVEIEKEFLSDALPCALLGMNATLMCQYIEF 328

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +A+R    +G    +  T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 329 VADRLLLSLGNTKFYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 377


>gi|332247268|ref|XP_003272775.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 1 [Nomascus leucogenys]
          Length = 434

 Score =  281 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 95/335 (28%), Positives = 159/335 (47%), Gaps = 28/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +E
Sbjct: 112 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 168

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 169 RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 228

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LFN    +P +  KA+WAL++              D +  + + +  F  V
Sbjct: 229 IKDPKEREFLFNAIETMPCVKKKADWALRWI------------GDKEATYGERVVAFAAV 276

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +   +         K
Sbjct: 277 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HK 328

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+ 
Sbjct: 329 PSEERVREIIINAVRIEQEFLTEALPVKLIGMNCILMKQYIEFVADRLMLELGFGKVFRV 388

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 389 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 421


>gi|322709430|gb|EFZ01006.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium
           anisopliae ARSEF 23]
          Length = 414

 Score =  281 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/341 (30%), Positives = 160/341 (46%), Gaps = 27/341 (7%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   +    D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   
Sbjct: 71  APGIKAEEVDEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 128

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           N L DDE+  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+
Sbjct: 129 NRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 188

Query: 132 QYIITSLGL---DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +          LFN    +P I  KA+WA+++ Q            D +  F Q 
Sbjct: 189 SLLIDTYIKENAQRTYLFNAIDTIPCIRKKADWAIRWIQ------------DKESTFAQR 236

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + +K  
Sbjct: 237 LVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHSHLKN- 294

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
                 +  +Q    ++ +A  +E  +  E +P   +G+N+   +QY++F+A+R    +G
Sbjct: 295 ------RASKQVIYDIITDAVAIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALG 348

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            E ++K T NPF +M E I L  + NFFE RV +YQ+   L
Sbjct: 349 NEKVYK-TSNPFDFM-ENISLGGKTNFFEKRVGDYQKAGVL 387


>gi|11878241|gb|AAG40862.1| ribonucleotide reductase [Emericella nidulans]
          Length = 406

 Score =  281 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 98/349 (28%), Positives = 164/349 (46%), Gaps = 31/349 (8%)

Query: 8   SPIQAGEKRVNVD----DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            P++  +  ++V     ++ +L        L P+KY   W+ Y  A  + W   E+ +  
Sbjct: 56  KPVEPSKAALDVKAIEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSK 115

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  W   N L +DER  I R L FFA+S+ +V  N++      +  PE R +   Q   
Sbjct: 116 DLHDWN--NRLNEDERYFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFYGFQIMI 173

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +H+ T+  +I +   +  +   LF+    +P I  KA+WA+++ Q            D
Sbjct: 174 ENIHAETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIKWIQ------------D 221

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            +  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   
Sbjct: 222 KESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACL 280

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           + + +         +  ++    ++ EA  +E  +  + +P   +G+NA    QY++F+A
Sbjct: 281 LFSHL-------NWRPSKKVVEDIIVEAVAIEKEFLTDALPCALLGMNAKLMCQYIEFVA 333

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +R    +G +  F  T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 334 DRLLVALGNKEYFNAT-NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 380


>gi|126303832|ref|XP_001381111.1| PREDICTED: similar to hCG23833, [Monodelphis domestica]
          Length = 493

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 160/350 (45%), Gaps = 28/350 (8%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
              ++         + +D+ +L        + P++Y   W  Y  A  + W   EV +  
Sbjct: 156 TEPVTKAPNEPASPSKEDEPLLRENPRRFVIFPIEYHDIWHMYKKAEASFWTAEEVDLSK 215

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+  W++   L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   
Sbjct: 216 DIQHWET---LKSEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAM 272

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS  +  +I +   D  E   LFN    +P +  KA+WAL++              D
Sbjct: 273 ENIHSEMYSLLIDTYIKDPKEREFLFNAIETLPCVKKKADWALRWI------------GD 320

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            +  + + +  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   
Sbjct: 321 NEATYGERVVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 379

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +   +         K  ++K + ++  A  +E  +  E +P   +G+N    +QY++F+A
Sbjct: 380 MFKHLV-------HKPSEEKVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVA 432

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +R   ++G   +F+  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 433 DRLMLELGFSKIFRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 480


>gi|145249942|ref|XP_001401310.1| ribonucleoside-diphosphate reductase small chain [Aspergillus niger
           CBS 513.88]
 gi|134081995|emb|CAK46680.1| unnamed protein product [Aspergillus niger]
          Length = 396

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 99/349 (28%), Positives = 162/349 (46%), Gaps = 31/349 (8%)

Query: 8   SPIQAGEKRVNVDD----KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
            P++A +    + +    + +L        L P+KY   W+ Y  A  + W   E+ +  
Sbjct: 50  KPVEAPKVAPGIKEMEASEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSK 109

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  W   N L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q   
Sbjct: 110 DLHDWH--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMM 167

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS T+  +I +   +  +   LF+    +P I  KA+WA+++ Q            D
Sbjct: 168 ENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIAKKADWAIKWIQ------------D 215

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            +  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   
Sbjct: 216 RESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACL 274

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           + + +         +  +Q    ++ EA  +E  +  + +P   +G+N+    QY++F+A
Sbjct: 275 LFSHLNN-------RPSKQVVEDIIVEAVGIEQEFLTDALPVALLGMNSKLMCQYIEFVA 327

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +R    +G +  +  T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 328 DRLLVALGNKKYYNAT-NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 374


>gi|171687074|ref|XP_001908478.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943498|emb|CAP69151.1| unnamed protein product [Podospora anserina S mat+]
          Length = 409

 Score =  280 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 101/351 (28%), Positives = 163/351 (46%), Gaps = 27/351 (7%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
               +  + A E +  + D+ +L        L P+KY   W+ Y  A  + W   E+ + 
Sbjct: 57  KKEEIKTVAAPEPKQELLDEPLLTENPQRFVLFPIKYHEVWQMYKKAEASFWTAEEIDLS 116

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  W   N L DDE+  I   L FFA+S+ +V  N+V      +  PE R +   Q  
Sbjct: 117 KDLHDW--SNKLNDDEKFFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGFQIM 174

Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +HS T+  +I +   +  +   LFN    +P I  KA+WAL++              
Sbjct: 175 MENIHSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWI------------S 222

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           D D  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F  
Sbjct: 223 DKDASFAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFAC 281

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            + + +         +  +Q    ++ +A  +E  +  E +P   +G+N+   +QY++F+
Sbjct: 282 LLFSHLNN-------RPSKQLVEDIIRDAVTIEQEFLTEALPCALLGMNSNLMKQYIEFV 334

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           A+R    +G + ++  + NPF +M E I L  + NFFE RV EYQ+   + 
Sbjct: 335 ADRLLVALGNDKIY-RSTNPFDFM-ENISLGGKTNFFEKRVGEYQKAGVMN 383


>gi|169860861|ref|XP_001837065.1| ribonucleotide reductase small subunit [Coprinopsis cinerea
           okayama7#130]
 gi|116501787|gb|EAU84682.1| ribonucleotide reductase small subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 414

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 27/350 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
              T L     GE  +   ++ +L        L P++Y   W+ Y  A  + W   E+ +
Sbjct: 63  DELTLLRRKFVGEVDLPESEEPLLKESKRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDL 122

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   N L D+ER  I   L FFA+S+ +V  N++      +   E R +   Q 
Sbjct: 123 SKDLHDWN--NKLNDNERHFISHVLAFFAASDGIVNENLLERFSNEVQAAEARCFYGFQI 180

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I +   D  +   LF+    +P I  KA+WAL +             
Sbjct: 181 MMENIHSETYSLLIDTYIKDPAQRDYLFDAVDTIPCIKKKADWALTWI------------ 228

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D    F + L  F  V EG++F   FA I  L +   M G+    + I RDE +H +F 
Sbjct: 229 SDQKSTFAERLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFA 287

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + +K        +      + ++ EA  +E  +  + +P   +G+NA    QY++F
Sbjct: 288 CLLFSHLKR-------RPHPDVVKRIITEAVAIEQEFLTDALPVKLIGMNAELMCQYIEF 340

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +A+R    +G E ++  + NPF +M  +I L+ + NFFE RV++Y +   
Sbjct: 341 VADRLLVSLGNEKVYN-STNPFDFMD-MISLQGKTNFFEKRVSDYAKAGV 388


>gi|242777635|ref|XP_002479074.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218722693|gb|EED22111.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 406

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 94/333 (28%), Positives = 155/333 (46%), Gaps = 27/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER 
Sbjct: 72  NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            + R L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+  +I +   
Sbjct: 130 FVSRVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIN 189

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  +   LF+    +P I  KA+WAL++              D +  F Q L  F  V E
Sbjct: 190 EPKQRTYLFDAIDNIPCIRKKADWALRWI------------SDKESTFAQRLVAFAAV-E 236

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + + +         +  
Sbjct: 237 GIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLNN-------RPN 289

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    ++ +A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  + 
Sbjct: 290 PKVIEDIIVDAVAIEQEFLTDALPCSLLGMNSKLMCQYIEFVADRLLVALGNKKYYN-ST 348

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L  + NFFE RV +YQ+   + 
Sbjct: 349 NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVMN 380


>gi|156058956|ref|XP_001595401.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980]
 gi|154701277|gb|EDO01016.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 407

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 102/341 (29%), Positives = 165/341 (48%), Gaps = 27/341 (7%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   +    D+ +L    +   L P+KY   W+ Y  A  + W   E+ +  DL  W   
Sbjct: 61  APGIKPEEADEPLLQENPNRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 118

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           N L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+
Sbjct: 119 NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 178

Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +   ++ +   LFN    +P I  KA+WA+++ Q            D +  F Q 
Sbjct: 179 SLLIDTYIKEQAQKTYLFNAIDTIPCIKKKADWAVKWIQ------------DKNSTFAQR 226

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + +K  
Sbjct: 227 LVAFAAV-EGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGLHTDFACLLFSHLK-- 283

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
                 +  +Q  + ++ EA  +E  +  E +P   +G+N+   +QY++F+A+R    +G
Sbjct: 284 -----HRPSKQAVQDVITEAVEIEQEFLTEALPCALLGMNSTLMKQYIEFVADRLLVTLG 338

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            + ++K + NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 339 NDKVYK-SANPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 377


>gi|150863757|ref|XP_001382334.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis
           CBS 6054]
 gi|149385013|gb|ABN64305.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis
           CBS 6054]
          Length = 417

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 100/333 (30%), Positives = 159/333 (47%), Gaps = 27/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L   +    L P+KY   W+ Y  A  + W   E+ +  D+  W   N L D+ER
Sbjct: 89  KDEPLLMENTRRFVLFPIKYNEVWQMYKKAEASFWTAEEIDLSKDITDWN--NRLNDNER 146

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I S  
Sbjct: 147 FFISRILAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDSYI 206

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA+WAL++              D D  F + L  F  V 
Sbjct: 207 KDPKEADFLFNAIDNIPCIRKKADWALRWI------------SDDDALFGERLVAFAAV- 253

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   + + ++        + 
Sbjct: 254 EGIFFSGSFASIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLFSHLQN-------RP 306

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             +    ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    +G + ++  T
Sbjct: 307 DAEIVEKIITEAVKIEKEFFTDALPSSLLGMNAELMCQYVEFVADRLLVALGNKKVYNVT 366

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 367 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 397


>gi|302904131|ref|XP_003049009.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729943|gb|EEU43296.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 389

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 103/338 (30%), Positives = 162/338 (47%), Gaps = 27/338 (7%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +     D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L
Sbjct: 50  EEAEEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRL 107

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T DE+  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+  +
Sbjct: 108 TSDEQFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLL 167

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   +  +   LFN    +P I  KA+WA+++ Q            D D  F Q L  
Sbjct: 168 IDTYIKEPSQRTYLFNAIETIPCIRKKADWAIRWIQ------------DKDSSFAQRLVA 215

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + +K     
Sbjct: 216 FAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHSHLK----- 269

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
              +  +Q  + ++ +A  +E  +  E +P   +G+NA   +QY++F+A+R    +G E 
Sbjct: 270 --GRASKQVIQDIITDAVTIEQEFLTEALPCALLGMNADLMKQYIEFVADRLLVALGNEK 327

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           ++K + NPF +M E I L  + NFFE RV +YQ+   L
Sbjct: 328 VYK-SANPFDFM-ENISLGGKTNFFEKRVGDYQKAGVL 363


>gi|303314521|ref|XP_003067269.1| ribonucleoside-diphosphate reductase small chain, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106937|gb|EER25124.1| ribonucleoside-diphosphate reductase small chain, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320037571|gb|EFW19508.1| ribonucleoside-diphosphate reductase small subunit [Coccidioides
           posadasii str. Silveira]
          Length = 408

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 163/351 (46%), Gaps = 27/351 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
             +   +P ++   +    ++ +L        L PLKY   W+ Y  A  + W   E+ +
Sbjct: 57  KPSAPEAPKKSLTPKELEAEEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTAEEIDL 116

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W  +  L DDER  I R L FFA+S+ +V  N+V      +  PE R +   Q 
Sbjct: 117 SKDLHDWNHR--LNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQI 174

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I +   +  +   LF+    +P I  KA+WA+++ Q           
Sbjct: 175 MMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIQ----------- 223

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 224 -DQESTFAQRLIAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 281

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + ++        +   +  + ++ EA  +E  +  + +P   +G+N+    QY++F
Sbjct: 282 CLLFSHLR-------HRPGPEAVQAIITEAVEIEKEFLTDALPCALLGMNSKLMCQYIEF 334

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +A+R    +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 335 VADRLLVALGNKKFYNAT-NPFDFMD-NISLSGKTNFFEKRVGDYQKAGVM 383


>gi|289620013|emb|CBI53457.1| unnamed protein product [Sordaria macrospora]
          Length = 410

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 101/352 (28%), Positives = 161/352 (45%), Gaps = 28/352 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
              +    I A   +     + +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 58  KKASEAKKI-APTLKPEEAAEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDL 116

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   N LTDDER  +   L FFA+S+ +V  N+V      +  PE R +   Q 
Sbjct: 117 SKDLHDWN--NRLTDDERFFVSHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQI 174

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I +   +  +   LFN    +P I  KA+WAL++             
Sbjct: 175 MMENIHSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWI------------ 222

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D    F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 223 TDKSSTFAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 281

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + +         +  +Q  + ++ +A  +E  +  E +P   +G+NA   +QY++F
Sbjct: 282 CLLFSHLNN-------RPSKQLIQDIIVDAVRIEQEFLTEALPCALLGMNADLMKQYIEF 334

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +G E ++  + NPF +M E I L  + NFFE RV +YQ+   + 
Sbjct: 335 VADRLLVALGNEKVY-RSTNPFDFM-ENISLGGKTNFFEKRVADYQKAGVMN 384


>gi|212533263|ref|XP_002146788.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium
           marneffei ATCC 18224]
 gi|210072152|gb|EEA26241.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium
           marneffei ATCC 18224]
          Length = 406

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 98/352 (27%), Positives = 159/352 (45%), Gaps = 27/352 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
                 +P  A   +    ++ +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 53  KPTVQATPKVAPSIKEMEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDL 112

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   N L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q 
Sbjct: 113 SKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQI 170

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I +   +  +   LF+    +P I  KA+WAL++             
Sbjct: 171 MMENIHSETYSLLIDTYINEPKQRTYLFDAIDNIPCIRKKADWALRWI------------ 218

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 219 SDKESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 277

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + +        T+   +    ++ +A  +E  +  + +P   +G+N+    QY++F
Sbjct: 278 CMLFSHL-------NTRPNPKVIEDIIVDAVAIEQEFLTDALPCALLGMNSKLMCQYIEF 330

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +G +  +  T NPF +M E I L  + NFFE RV +YQ+   + 
Sbjct: 331 VADRLLVALGNKKYYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVMN 380


>gi|255536887|ref|XP_002509510.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
           communis]
 gi|223549409|gb|EEF50897.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
           communis]
          Length = 329

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 154/333 (46%), Gaps = 29/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P++Y   WE Y  A  + W   EV +  DL  W+S   LT DE+ 
Sbjct: 6   EEPLLAPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDLRHWES---LTPDEKH 62

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  +  ++ +   
Sbjct: 63  FISHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIK 122

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF+    VP I  KA WAL++     S                +  + +   E
Sbjct: 123 DSNEKNRLFHAIETVPCIAKKAEWALKWIDGSES--------------FAERIIAFACVE 168

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + +K +         
Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLKKKLS------- 221

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ + ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G    +  + 
Sbjct: 222 EERVKGIVRDAVNIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGCGKEYNVS- 280

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ A + 
Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKAAVMS 312


>gi|85109237|ref|XP_962820.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa
           OR74A]
 gi|30316285|sp|Q9C167|RIR2_NEUCR RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|16273691|gb|AAK14804.2| small subunit of ribonucleotide reductase [Neurospora crassa]
 gi|28924456|gb|EAA33584.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa
           OR74A]
          Length = 410

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 99/342 (28%), Positives = 159/342 (46%), Gaps = 27/342 (7%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   +    ++ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   
Sbjct: 67  APTLKPEEANEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 124

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           N L DDE+  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+
Sbjct: 125 NRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 184

Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +   +  +   LFN    +P I  KA+WAL++              D    F Q 
Sbjct: 185 SLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWI------------TDKSSTFAQR 232

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + +   
Sbjct: 233 LVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLNN- 290

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
                 +  +Q  + ++ +A  +E  +  E +P   +G+NA   +QY++F+A+R    +G
Sbjct: 291 ------RPSKQLIQEIIVDAVRIEQEFLTEALPCALLGMNADLMKQYIEFVADRLLVALG 344

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            E ++  + NPF +M E I L  + NFFE RV +YQ+   + 
Sbjct: 345 NEKIY-RSTNPFDFM-ENISLGGKTNFFEKRVGDYQKAGVMN 384


>gi|119174781|ref|XP_001239725.1| hypothetical protein CIMG_09346 [Coccidioides immitis RS]
          Length = 408

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 96/332 (28%), Positives = 157/332 (47%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        L PLKY   W+ Y  A  + W   E+ +  DL  W  +  L DDER 
Sbjct: 76  EEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNHR--LNDDERY 133

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+  +I +   
Sbjct: 134 FISRVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIK 193

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  +   LF+    +P I  KA+WA+++ Q            D +  F Q L  F  V E
Sbjct: 194 EPKQRTYLFDAIDTIPCIRKKADWAIRWIQ------------DQESTFAQRLIAFAAV-E 240

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + + ++        +  
Sbjct: 241 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLR-------HRPG 293

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +  + ++ EA  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  T 
Sbjct: 294 PEAVQAIITEAVEIEKEFLTDALPCALLGMNSKLMCQYIEFVADRLLVALGNKKFYNAT- 352

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 353 NPFDFMD-NISLSGKTNFFEKRVGDYQKAGVM 383


>gi|154296564|ref|XP_001548712.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana
           B05.10]
 gi|150843273|gb|EDN18466.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana
           B05.10]
          Length = 407

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 164/341 (48%), Gaps = 27/341 (7%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   +    D+ +L    +   L P+KY   W+ Y  A  + W   E+ +  DL  W  +
Sbjct: 61  APGIKPEEADEPLLQENPNRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNER 120

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L DDER  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+
Sbjct: 121 --LNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 178

Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +   ++ +   LFN    +P I  KA+WA+++ Q            D +  F Q 
Sbjct: 179 SLLIDTYIKEQSQKTYLFNAIDTIPCIKKKADWAVKWIQ------------DKNSTFAQR 226

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + +K  
Sbjct: 227 LVAFAAV-EGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGLHTDFACLLFSHLK-- 283

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
                 +  +Q  + ++ EA  +E  +  E +P   +G+N+   +QY++F+A+R    +G
Sbjct: 284 -----HRPSKQAVQDVITEAVEIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLLSLG 338

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +  +K + NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 339 NDKYYK-SANPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 377


>gi|2500209|sp|Q60561|RIR2_MESAU RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|49650|emb|CAA48232.1| ribonucleotide reductase [Mesocricetus auratus]
          Length = 386

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 157/346 (45%), Gaps = 28/346 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
            P        +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  
Sbjct: 57  EPESKVSTNPSVEDEPLLRENPRRFVVFPIEYHDIWKMYKKAEASFWTAEEVDLSKDIQH 116

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+    L  DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 117 WE---ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIH 173

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E   LFN    +P +  KA+WAL++                 + 
Sbjct: 174 SEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIG-------------DKEA 220

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 221 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKH 280

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +         K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R  
Sbjct: 281 LV-------HKPSEQRVQEIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 333

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++G   +FK  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 334 LELGFNKIFKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|70997335|ref|XP_753417.1| ribonucleotide reductase small subunit RnrA [Aspergillus fumigatus
           Af293]
 gi|66851053|gb|EAL91379.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           fumigatus Af293]
 gi|159126856|gb|EDP51972.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           fumigatus A1163]
          Length = 405

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 154/332 (46%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER 
Sbjct: 72  NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS T+  +I +   
Sbjct: 130 FISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIK 189

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  +   LF+    +P I  KA WA+++              D +  F Q L  F  V E
Sbjct: 190 EPKQRTYLFDAIDTIPCIRKKAQWAMRWI------------SDKESTFAQRLVAFAAV-E 236

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + + +         +  
Sbjct: 237 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHL-------NHRPD 289

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++    ++ EA  +E  +  + +P   +G+N+    QY++F+A+R    +G +  F  + 
Sbjct: 290 KKVIEDIIVEAVAIEQEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYFN-SP 348

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 349 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 379


>gi|116191729|ref|XP_001221677.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51]
 gi|88181495|gb|EAQ88963.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51]
          Length = 409

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/352 (28%), Positives = 162/352 (46%), Gaps = 28/352 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M      + + A   + +  D+ +L        L P+KY   W+ Y  A  + W   E+ 
Sbjct: 56  MKKKETSAAV-APTIKADEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEID 114

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  DL  W   N + DDE+  I   L FFA+S+ +V  N+V      +  PE R +   Q
Sbjct: 115 LSKDLHDWN--NKINDDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQ 172

Query: 121 AFEEAVHSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS T+  +I +   +      LFN    +P+I  KA+WAL++            
Sbjct: 173 IMMENIHSETYSLLIDTYIKEPAQRTHLFNAIDTIPAIRKKADWALRWI----------- 221

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
             D    F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 222 -TDQKSTFAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 279

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + + +         +  +Q    ++ +A  +E  +  E +P   +G+N+   +QY++
Sbjct: 280 ACLLFSHLNN-------RPSKQIIEDIIVDAVRIEQEFLTEALPCALLGMNSNLMKQYIE 332

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           F+A+R    +G E ++  + NPF +M E I L  + NFFE RV EYQ+   +
Sbjct: 333 FVADRLLVALGNEKVY-RSTNPFDFM-ENISLGGKTNFFEKRVGEYQKAGVM 382


>gi|149408710|ref|XP_001506085.1| PREDICTED: similar to 5,10-methenyltetrahydrofolate synthetase
           [Ornithorhynchus anatinus]
          Length = 394

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 28/350 (8%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
              L  + +      V+D+ +L        + P++Y   W+ Y  A  + W   EV +  
Sbjct: 57  QEPLESVVSSWASPRVEDEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSK 116

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+  W+S   L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   
Sbjct: 117 DIQHWES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAM 173

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS  +  +I +   +  E   LFN    +P +  KA+WAL++               
Sbjct: 174 ENIHSEMYSLLIDTYIKEPKEREFLFNAIETLPCVKKKADWALRWIG------------- 220

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   
Sbjct: 221 DKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 280

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +   +         K  +++ + ++  A  +E  +  E +P   +G+N    +QY++F+A
Sbjct: 281 MFKHLV-------HKPSEERVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVA 333

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +R   ++G   +FK  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 334 DRLLLELGFSKIFKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 381


>gi|310798394|gb|EFQ33287.1| ribonucleotide reductase [Glomerella graminicola M1.001]
          Length = 413

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 98/346 (28%), Positives = 162/346 (46%), Gaps = 27/346 (7%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
            P+     +    D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  
Sbjct: 66  KPVVVPGIKEQEMDEPLLQENGQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHD 125

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W   N + +DE+  I   L FFA+S+ +V  N+V      +  PE R +   Q   E +H
Sbjct: 126 WN--NKINEDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIH 183

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S T+  +I +   +  +   LFN    +P I  KA+WAL++              D    
Sbjct: 184 SETYSLLIDTYIKEPAQRTYLFNAIDTIPCIRKKADWALKWI------------SDEKSS 231

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + 
Sbjct: 232 FAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSH 290

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +K        +  +Q  + ++ +A  +E  +  E +P   +G+N+   +QY++F+A+R  
Sbjct: 291 LKN-------RPSKQVIQDIIVDAVQIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLL 343

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             +G + ++K + NPF +M E I L  + NFFE RV +YQ+   + 
Sbjct: 344 VALGNDKVYK-SSNPFDFM-ENISLGGKTNFFEKRVADYQKAGVMN 387


>gi|119478853|ref|XP_001259462.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya
           fischeri NRRL 181]
 gi|119407616|gb|EAW17565.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya
           fischeri NRRL 181]
          Length = 405

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 154/332 (46%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER 
Sbjct: 72  NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS T+  +I +   
Sbjct: 130 FISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIK 189

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  +   LF+    +P I  KA WA+++              D +  F Q L  F  V E
Sbjct: 190 EPKQRTYLFDAIDTIPCIAKKAQWAMRWI------------SDKESTFAQRLVAFAAV-E 236

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + + +         +  
Sbjct: 237 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHL-------NHRPD 289

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++    ++ EA  +E  +  E +P   +G+N+    QY++F+A+R    +G +  +  + 
Sbjct: 290 KKVVEDIIVEAVAIEQEFLTEALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYYN-SS 348

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 349 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 379


>gi|121713826|ref|XP_001274524.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           clavatus NRRL 1]
 gi|119402677|gb|EAW13098.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           clavatus NRRL 1]
          Length = 405

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 154/332 (46%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER 
Sbjct: 72  NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS T+  +I +   
Sbjct: 130 FISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIK 189

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  +   LF+    +P I  KA WA+++              D +  F Q L  F  V E
Sbjct: 190 EPKQRAYLFDAIDTIPCINKKAQWAMRWI------------SDKESSFGQRLVAFAAV-E 236

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + + +         +  
Sbjct: 237 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLNN-------RPD 289

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++    ++ EA  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  + 
Sbjct: 290 KKVVEDIIVEAVAIEQEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYYN-SP 348

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 349 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 379


>gi|315041979|ref|XP_003170366.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma
           gypseum CBS 118893]
 gi|311345400|gb|EFR04603.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma
           gypseum CBS 118893]
          Length = 408

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/343 (27%), Positives = 157/343 (45%), Gaps = 27/343 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++A   +    ++ +L        L P+KY   W+ Y  A  + W   E+ +  D+  W 
Sbjct: 65  VKAKTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 124

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L DDER  I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS 
Sbjct: 125 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 182

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I +   ++ +   LF     +P I  KA+WA+++ Q            D D  F 
Sbjct: 183 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKDSTFA 230

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + + 
Sbjct: 231 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHL- 288

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   +        ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    
Sbjct: 289 ------NHRPEPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 342

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 343 LGNKKFYN-TTNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 383


>gi|224129040|ref|XP_002328875.1| predicted protein [Populus trichocarpa]
 gi|222839305|gb|EEE77642.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 155/333 (46%), Gaps = 29/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P++Y   WE Y  A  + W   EV +  D+  W+    LT DE+ 
Sbjct: 6   EEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDIRHWE---NLTPDEKH 62

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  +  ++ +   
Sbjct: 63  FISHVLAFFAASDGIVLENLAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIK 122

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF+    VP +  KA WAL++              D  + F + L   +   E
Sbjct: 123 DSEEKNRLFHAIETVPCVAKKARWALRWI-------------DGSESFAERLVA-FACVE 168

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++ +         
Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKKLS------- 221

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ + ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++    
Sbjct: 222 EEQVKGIVKDAVDIEREFVVDALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA- 280

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312


>gi|115387427|ref|XP_001211219.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
           terreus NIH2624]
 gi|114195303|gb|EAU37003.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
           terreus NIH2624]
          Length = 401

 Score =  277 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/332 (28%), Positives = 156/332 (46%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L +DER 
Sbjct: 71  NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNEDERY 128

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+  +I +   
Sbjct: 129 FISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMIENIHSETYSLLIDTYIK 188

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  +   LF+    +P I  KA+WA+++ Q            D +  F Q L  F  V E
Sbjct: 189 EPKQRTYLFDAIDNIPCIAKKADWAIKWIQ------------DQESTFGQRLVAFAAV-E 235

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + + +         +  
Sbjct: 236 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLNN-------RPS 288

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +Q    ++ EA  +E  +  + +P   +G+N+    QY++F+A+R    +G    F ++ 
Sbjct: 289 KQVVEDIIVEAVAIEKEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNNKYF-HST 347

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 348 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 378


>gi|326472581|gb|EGD96590.1| ribonucleotide reductase small subunit RnrA [Trichophyton tonsurans
           CBS 112818]
          Length = 408

 Score =  277 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 94/343 (27%), Positives = 156/343 (45%), Gaps = 27/343 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++    +    ++ +L        L P+KY   W+ Y  A  + W   E+ +  D+  W 
Sbjct: 65  VKPKTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 124

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L DDER  I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS 
Sbjct: 125 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 182

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I +   ++ +   LF     +P I  KA+WA+++ Q            D +  F 
Sbjct: 183 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKNSTFS 230

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + + 
Sbjct: 231 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHL- 288

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   +        ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    
Sbjct: 289 ------NYRPDPNAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 342

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 343 LGNKKFYN-TTNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 383


>gi|169779219|ref|XP_001824074.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
           oryzae RIB40]
 gi|238499845|ref|XP_002381157.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           flavus NRRL3357]
 gi|83772813|dbj|BAE62941.1| unnamed protein product [Aspergillus oryzae]
 gi|220692910|gb|EED49256.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
           flavus NRRL3357]
          Length = 405

 Score =  277 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/332 (28%), Positives = 153/332 (46%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L DDER 
Sbjct: 73  NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWH--NRLNDDERF 130

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N++      +  PE R +   Q   E +H+ T+  +I +   
Sbjct: 131 FISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFYGFQIMIENIHAETYSLLIDTYIK 190

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  +   LF+    +P I  KA+WA+++ Q            D +  F Q L  F  V E
Sbjct: 191 EPKQRTYLFDAIDTIPCIRKKADWAIRWIQ------------DQESTFGQRLVAFAAV-E 237

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + + +            
Sbjct: 238 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLNNRPDP------ 291

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            Q    ++ EA  +E  +  + +P   +G+N+    QY++F+A+R    +G    F  T 
Sbjct: 292 -QIVEDVIVEAVSIEKEFLTDALPCALLGMNSNLMCQYIEFVADRLLVALGNNKYFNAT- 349

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 350 NPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 380


>gi|224055741|ref|XP_002298630.1| predicted protein [Populus trichocarpa]
 gi|222845888|gb|EEE83435.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 91/333 (27%), Positives = 156/333 (46%), Gaps = 29/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P++Y   WE Y  A  + W   EV +  D+  W+    LT DE+ 
Sbjct: 6   EEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDVGHWE---NLTPDEKH 62

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  NI     + +   E R +   Q   E +HS  +  ++ +   
Sbjct: 63  FISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIK 122

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF+    VP +  KA WAL++              D  + F + L   +   E
Sbjct: 123 DSTEKNRLFHAIETVPCVAKKAEWALRWI-------------DGGESFAERLIA-FACVE 168

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++ +         
Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKKLS------- 221

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ + ++ EA  +E  +  +++P   VG+N     QY++F+A+R    +G   ++    
Sbjct: 222 EERVKGIVKEAVDIEREFVVDSLPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA- 280

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312


>gi|258567064|ref|XP_002584276.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus
           reesii 1704]
 gi|237905722|gb|EEP80123.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus
           reesii 1704]
          Length = 401

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 99/352 (28%), Positives = 160/352 (45%), Gaps = 27/352 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +  +    P +A   +    ++ +L        L PLKY   W+ Y  A  + W   E+ 
Sbjct: 49  IKPSAPEEPKKALSPKELEAEEPLLQENPQRFVLFPLKYHEIWQMYKKAEASFWTAEEID 108

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  DL  W  +  L DDER  I R L FFA+S+ +V  N+V      +  PE R +   Q
Sbjct: 109 LSKDLHDWNHR--LNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQ 166

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS T+  +I +   +  +   LF     +P I  KA+WA+++ Q          
Sbjct: 167 IMMENIHSETYSLLIDTYIKEPKQRTYLFEALDNIPCIRKKADWAIRWIQ---------- 216

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
             D D  F Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 217 --DKDSTFAQRLIAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 273

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + + I+        +        ++ EA  +E  +  + +P   +G+N+    QY++
Sbjct: 274 ACLLFSHIR-------HRPTPAAVEAIITEAVEIEKEFLTDALPCALLGMNSKLMCQYIE 326

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           F+A+R    +G +  + +  NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 327 FVADRLLVALGNKKFY-HATNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 376


>gi|302409182|ref|XP_003002425.1| ribonucleoside-diphosphate reductase small chain [Verticillium
           albo-atrum VaMs.102]
 gi|261358458|gb|EEY20886.1| ribonucleoside-diphosphate reductase small chain [Verticillium
           albo-atrum VaMs.102]
          Length = 414

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 101/351 (28%), Positives = 161/351 (45%), Gaps = 27/351 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
               G   + A   +    D+ +L        L P+KY   W+ Y  A  + W   E+ +
Sbjct: 61  KREEGDKAVVAPGIKDFEADEPLLRENGQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDL 120

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   N + DDE+  I   L FFA+S+ +V  N+V      +  PE R +   Q 
Sbjct: 121 SKDLHDWN--NKINDDEKYFISHILAFFAASDGIVNENLVERFSAEVQVPEARCFYGFQI 178

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I +   +  +   LFN    +P I  KA+WAL +             
Sbjct: 179 MMENIHSETYSLLIDTYIKEPAQRTYLFNAIDTIPCIRKKADWALTWI------------ 226

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D    F   L   + V EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 227 TDKKSTFATRLVA-FAVVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 285

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + +         +  +Q  + ++ +A  +E  +  E +P G +G+NA   +QY++F
Sbjct: 286 CLLFSHLNN-------RPSKQTVQDIVTDAVNIEQEFLTEALPCGLLGMNATLMKQYIEF 338

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +A+R    +G E ++K T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 339 VADRLLVALGNEKVYKAT-NPFDFM-ENISLGGKTNFFEKRVADYQKAGVM 387


>gi|50545856|ref|XP_500466.1| YALI0B03630p [Yarrowia lipolytica]
 gi|49646332|emb|CAG82692.1| YALI0B03630p [Yarrowia lipolytica]
          Length = 403

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 97/337 (28%), Positives = 161/337 (47%), Gaps = 27/337 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R +  D+ +L        L P++Y   W+ Y  A  + W   E+ +  D+  W+  N L 
Sbjct: 71  RESEKDEPLLKENHRRFVLFPIQYHEIWQMYKKAEASFWTAEEIDLGKDMGDWE--NRLN 128

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           +DER  I   L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I
Sbjct: 129 NDERFFISHVLAFFAASDGIVNENLVERFSGEVQAPEAKCFYGFQIMMENIHSETYSLLI 188

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   LFN    +P I  KA+WAL++              D +  F + L  F
Sbjct: 189 DTYIKDPKERTYLFNAIETIPCIKKKADWALKWI------------SDEESTFGERLIAF 236

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             V EG++F   FA I  L +   M G+    + I RDE LH +F   + + ++      
Sbjct: 237 AAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLEN----- 290

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             +  ++    ++ EA  +E  +  + +P G +G+NA    QY++F+A+R    +G   +
Sbjct: 291 --RPSKKIVEDVIVEAVGIEQEFLTDALPCGLLGMNAKLMCQYIEFVADRLLVALGNSKV 348

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +  + NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 349 YN-STNPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 383


>gi|46122063|ref|XP_385585.1| hypothetical protein FG05409.1 [Gibberella zeae PH-1]
          Length = 399

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 163/333 (48%), Gaps = 27/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N LT DE+
Sbjct: 65  EDEPILQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLTSDEQ 122

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+  +I +  
Sbjct: 123 YFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYI 182

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  +   LFN    +P I  KA+WA+++ Q            D +  F Q L  F  V 
Sbjct: 183 KDPAQRTYLFNAVDTIPCIRKKADWAIRWIQ------------DKNSTFAQRLVAFAAV- 229

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G++   + I RDE LH +F   + + +K        + 
Sbjct: 230 EGIFFSGAFASIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLHSHLK-------GRA 282

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            +Q  + ++ +A  +E  +  E +P   +G+N+   +QY++F+A+R    +G E ++K +
Sbjct: 283 SKQMIQDIITDAVSIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALGNEKVYK-S 341

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            NPF +M E I L  + NFFE RV +YQ+   L
Sbjct: 342 TNPFDFM-ENISLGGKTNFFEKRVADYQKAGVL 373


>gi|302843870|ref|XP_002953476.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f.
           nagariensis]
 gi|300261235|gb|EFJ45449.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f.
           nagariensis]
          Length = 400

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 92/344 (26%), Positives = 159/344 (46%), Gaps = 29/344 (8%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
            +    ++   D + +L+   D   + P+KY   WE Y  A  + W   EV + DD+  W
Sbjct: 67  ELFTSPRKSMRDPEPLLDENPDRFCMFPIKYPKIWEMYKKAEASFWTAEEVDLGDDMKHW 126

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L+D ER  I   L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS
Sbjct: 127 E---KLSDGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVAIENIHS 183

Query: 129 HTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
             +  ++ +   D  E   LF+    VP I  KA WA+++  +             +  F
Sbjct: 184 EMYSLLLETYIKDPIEKHKLFHSIETVPCIKKKAQWAIKWIGS-------------ESSF 230

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
            + L  F  V EG++F   F  I  L +   M G+    + I RDE LH +F   +   +
Sbjct: 231 PERLVAFAAV-EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYGML 289

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
             +         + + + ++ EA  +E  +  + +P   +G+N+    QY++F+A+R   
Sbjct: 290 SKQL-------EESRIKEIICEAVDIENEFCTDALPVDLIGMNSRLMAQYIEFVADRLLV 342

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +G    +  T NPF +M  +I L+ + NFFE RV +YQ+   +
Sbjct: 343 ALGCSKAYNVT-NPFDFMD-MISLQGKTNFFEKRVGDYQKSGVM 384


>gi|255954081|ref|XP_002567793.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589504|emb|CAP95650.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 400

 Score =  276 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 97/365 (26%), Positives = 159/365 (43%), Gaps = 41/365 (11%)

Query: 2   ANNTGLSPIQAGEKRVNVD--------------DKRMLNARSDVNQLLPLKYGWAWEKYL 47
             N  L P+    ++                   + +L        + P+KY   W+ Y 
Sbjct: 35  KENASLKPVDTPIEKPTEKALENKPLTVKELEATEPLLQENPHRFVMFPIKYHEIWQMYK 94

Query: 48  SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107
            A  + W   E+ +  DL  W   N L DDER  I   L FFA+S+ +V  N+V      
Sbjct: 95  KAEASFWTAEEIDLSKDLHDWH--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSAE 152

Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQ 164
           +  PE R +   Q   E +HS T+  +I +   +  +   LF+    +P IT KANWA++
Sbjct: 153 VQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCITKKANWAIR 212

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
           +              D +  F   L  F  V EG++F   FA I  L +   M G+    
Sbjct: 213 WIN------------DRESTFASRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSN 259

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I RDE LH +F   + +        +  +   +    ++ EA  +E  +  + +P   
Sbjct: 260 ELISRDEGLHTDFACLLFSH-------MNHRPDPKVVEEIIVEAVGIEQEFLTDALPCAL 312

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
           +G+N+    QY++F+A+R    +G +  +  + NPF +M E I L  + NFFE RV +YQ
Sbjct: 313 LGMNSKLMCQYIEFVADRLLVALGNKKYYN-SANPFDFM-ESISLAGKTNFFEKRVGDYQ 370

Query: 345 QGAEL 349
           +   +
Sbjct: 371 KAGVM 375


>gi|302497417|ref|XP_003010709.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371]
 gi|291174252|gb|EFE30069.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371]
          Length = 408

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 156/343 (45%), Gaps = 27/343 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++    +    ++ +L        L P+KY   W+ Y  A  + W   E+ +  D+  W 
Sbjct: 65  VKPKTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 124

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L DDER  I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS 
Sbjct: 125 --NRLNDDERYFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 182

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I +   ++ +   LF     +P I  KA+WA+++ Q            D D  F 
Sbjct: 183 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKDSTFA 230

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + + 
Sbjct: 231 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHL- 288

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   +        ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    
Sbjct: 289 ------NYRPDPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 342

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 343 LGNKKFYN-TTNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 383


>gi|307110551|gb|EFN58787.1| hypothetical protein CHLNCDRAFT_34102 [Chlorella variabilis]
          Length = 335

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 90/340 (26%), Positives = 156/340 (45%), Gaps = 29/340 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E+ +    + +L +  D   + P+KY   WE Y  A  + W   EV +  D+  W+    
Sbjct: 6   EQSLEDSQEPLLASNDDRFVMFPIKYRDIWEMYKKAEASFWTAEEVDLGSDVKDWE---R 62

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L+DDER  +   L FFA+S+ +V  N+     + +  PE R +   Q   E +HS  +  
Sbjct: 63  LSDDERHFVSHVLAFFAASDGIVNENLGARFMQEVQVPEARAFYGFQIAMENIHSEMYSL 122

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           ++ +   D  E   LF+    VP +  KA+WAL++                   F + L 
Sbjct: 123 LLEAYIKDPKEKDKLFHAIDTVPVVRKKAHWALKWIN-------------GSDLFSERLI 169

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
             +   EG++F   F  I  L +   M G+    + I RDE LH +F   +   I     
Sbjct: 170 A-FACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYRHIHNRLS 228

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
                  +++   ++ +A  +E  +  + +P   +G+N+    QY++F+A+R    +G  
Sbjct: 229 -------EERVAEIVTQAVEIEKEFICDALPVDLIGMNSRLMGQYIEFVADRLLVALGNP 281

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++  + NPF WM E+I L+ + NFFE RV +YQ+   + 
Sbjct: 282 KVYNVS-NPFDWM-ELISLQGKTNFFEKRVGDYQKAGVMN 319


>gi|327298815|ref|XP_003234101.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum
           CBS 118892]
 gi|326464279|gb|EGD89732.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum
           CBS 118892]
          Length = 408

 Score =  275 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 94/343 (27%), Positives = 156/343 (45%), Gaps = 27/343 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++    +    ++ +L        L P+KY   W+ Y  A  + W   E+ +  D+  W 
Sbjct: 65  VKPKTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 124

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L DDER  I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS 
Sbjct: 125 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 182

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I +   ++ +   LF     +P I  KA+WA+++ Q            D +  F 
Sbjct: 183 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKNSTFA 230

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + + 
Sbjct: 231 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHL- 288

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   +        ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    
Sbjct: 289 ------NYRPDPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 342

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 343 LGNKKFYN-TTNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 383


>gi|148705043|gb|EDL36990.1| ribonucleotide reductase M2 [Mus musculus]
          Length = 411

 Score =  275 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 94/338 (27%), Positives = 156/338 (46%), Gaps = 28/338 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
             +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+    L 
Sbjct: 86  NPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALK 142

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I
Sbjct: 143 PDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLI 202

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   LFN    +P +  KA+WAL++                 +    +  V 
Sbjct: 203 DTYIKDPKEREYLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVA 249

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +       
Sbjct: 250 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------ 303

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             K  +Q+ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +
Sbjct: 304 -HKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKI 362

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F+  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 363 FRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 398


>gi|291220709|ref|XP_002730368.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like
           [Saccoglossus kowalevskii]
          Length = 402

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 101/352 (28%), Positives = 160/352 (45%), Gaps = 31/352 (8%)

Query: 5   TGLSPIQ---AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           T + P++      K  N +D+ +L        + P+KY   W+ Y  A  + W   EV +
Sbjct: 63  TDVEPVKLEKRKSKPQNNEDEPLLRDNPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDL 122

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DLA W S   L DDER  I   L FFA+S+ +V  N+V    + +   E R +   Q 
Sbjct: 123 SKDLAHWAS---LKDDERHFISHVLAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQI 179

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS  +  +I +   D  E   LFN    +P +  KA WAL +             
Sbjct: 180 AIENIHSEMYSLLIDTYIRDPQEREYLFNAIETLPPVKRKAQWALNWINA---------- 229

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
              D     +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 230 ---DNATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 286

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + +         K  QQ+   ++ +A  +E  +  + +P   +G+N    +QY++F
Sbjct: 287 CLMFSHLTN-------KPSQQRIIEIIRDAVKIEQEFLTDALPVSLIGMNKDLMKQYIEF 339

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +G   ++   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 340 VADRLLLDLGCNKIYN-KENPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 389


>gi|169613737|ref|XP_001800285.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15]
 gi|111061216|gb|EAT82336.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15]
          Length = 409

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 97/342 (28%), Positives = 157/342 (45%), Gaps = 28/342 (8%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
           A   +     + +L    +   L P+KY   W+ Y  A  + W   E+ +  DL  W  +
Sbjct: 61  APTIKEEEAHEPLLQENPNRFVLFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHDWNKR 120

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIV-LAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
             L DDER  I   L FFA+S+ +V  N+V       +  PE R +   Q   E +HS T
Sbjct: 121 --LNDDERFFISHVLAFFAASDGIVNENLVDERFSSEVQIPEARCFYGFQIMMENIHSET 178

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   +  +   LFN    +P I  KA+WAL++              D +  F  
Sbjct: 179 YSLLIDTYISEPRQRTYLFNAIDNIPCIRKKADWALKWI------------SDKNSTFAN 226

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L  F  V EG++F   FA I  L +   M G+    + I RDE +H +F   + + +  
Sbjct: 227 RLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFACLLFSLL-- 283

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                 T+  +   + ++ EA  +E  +  E +P   +G+N+    QY++F+A+R    +
Sbjct: 284 -----NTRPSKDAVKAIITEAVEIEQEFLTEALPCALLGMNSTLMCQYIEFVADRLLLAL 338

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   ++  T NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 339 GNTKVYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 378


>gi|159465835|ref|XP_001691128.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas
           reinhardtii]
 gi|158279814|gb|EDP05574.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas
           reinhardtii]
          Length = 394

 Score =  275 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 98/350 (28%), Positives = 163/350 (46%), Gaps = 30/350 (8%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
             + L  +     R  + ++ +L+   D   + P+KY   WE Y  A  + W   EV + 
Sbjct: 56  KGSNLRELFT-SPRKRMLEEPLLDENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLG 114

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
           DD+  W+    L+D ER  I   L FFA+S+ +V  N+ +   + +  PE R +   Q  
Sbjct: 115 DDMKHWE---KLSDGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVA 171

Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +HS  +  ++ S   D  E   LF+    VP I  KA WA+++  +           
Sbjct: 172 IENIHSEMYSLLLESYIKDPQEKHKLFHSIETVPCIKKKAQWAMKWIGS----------- 220

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D  F + L  F  V EG++F   F  I  L +   M G+    + I RDE LH +F  
Sbjct: 221 --DSVFSERLVAFAAV-EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 277

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            + + +        T+  + + + ++ EA  +E  +  E +P   +G+N+    QY+QF+
Sbjct: 278 MLFSML-------NTRIDETRVKQIIVEAVEIEQEFCTEALPVDLIGMNSRLMAQYIQFV 330

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           A+R    +G    +    NPF +M E+I L+ + NFFE RV +YQ+   +
Sbjct: 331 ADRLLVSLGCAKQYNVV-NPFEFM-EMISLQGKTNFFEKRVGDYQKNGVM 378


>gi|321476700|gb|EFX87660.1| hypothetical protein DAPPUDRAFT_306462 [Daphnia pulex]
          Length = 378

 Score =  275 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/338 (26%), Positives = 156/338 (46%), Gaps = 28/338 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R N  ++ +L +      L P++Y   W+ Y  A  + W   EV +  DL  W   + L 
Sbjct: 51  RDNDQNEPLLRSNPSRFVLFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLKDW---DNLQ 107

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +ER  +   L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  +  +I
Sbjct: 108 PNERHFVSHVLAFFAASDGIVNENLVERFAQEVQVPEARCFYGFQIAMENIHSEMYSLLI 167

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   LFN    +P I  KA WA+++     +P               +  V 
Sbjct: 168 ETYIKDSAERTRLFNAVETMPCIAKKAEWAMKWIGNKDAP-------------YSERIVA 214

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +  + P  
Sbjct: 215 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACVMFKHLVNKPP-- 272

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
                +++   +++ A  +E  +  + +P   +G+N     QY++F+A+R   ++G   L
Sbjct: 273 -----KERIIEIINNAVKIEQEFLTDALPVEMIGMNCRLMRQYIEFVADRLLLELGCTKL 327

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +  +ENPF +M   I L+ + NFFE +V EYQ+   + 
Sbjct: 328 YN-SENPFDFMEH-ISLEGKTNFFEKKVGEYQKAGVMN 363


>gi|4557845|ref|NP_001025.1| ribonucleoside-diphosphate reductase subunit M2 isoform 2 [Homo
           sapiens]
 gi|400979|sp|P31350|RIR2_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|36155|emb|CAA42181.1| small subunit ribonucleotide reductase [Homo sapiens]
 gi|251637|gb|AAA09577.1| ribonucleotide reductase R2 subunit [Homo sapiens]
 gi|12804875|gb|AAH01886.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens]
 gi|14029165|gb|AAK51163.1| ribonucleotide reductase M2 subunit [Homo sapiens]
 gi|20988810|gb|AAH30154.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens]
 gi|62702173|gb|AAX93099.1| unknown [Homo sapiens]
 gi|123981920|gb|ABM82789.1| ribonucleotide reductase M2 polypeptide [synthetic construct]
 gi|123996753|gb|ABM85978.1| ribonucleotide reductase M2 polypeptide [synthetic construct]
 gi|189053955|dbj|BAG36462.1| unnamed protein product [Homo sapiens]
 gi|261861600|dbj|BAI47322.1| ribonucleotide reductase M2 [synthetic construct]
          Length = 389

 Score =  275 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 93/335 (27%), Positives = 156/335 (46%), Gaps = 28/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +E
Sbjct: 67  VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 123

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 124 RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 183

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LFN    +P +  KA+WAL++                 +    +  V +  
Sbjct: 184 IKDPKEREFLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVAFAA 230

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +   +         K
Sbjct: 231 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HK 283

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+ 
Sbjct: 284 PSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV 343

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 344 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 376


>gi|75076796|sp|Q4R7Q7|RIR2_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|67969020|dbj|BAE00865.1| unnamed protein product [Macaca fascicularis]
          Length = 389

 Score =  275 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 93/335 (27%), Positives = 156/335 (46%), Gaps = 28/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +E
Sbjct: 67  VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 123

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 124 RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 183

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LFN    +P +  KA+WAL++                 +    +  V +  
Sbjct: 184 IKDPKEREFLFNAIETMPCVEKKADWALRWIG-------------DKEATYGERVVAFAA 230

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +   +         K
Sbjct: 231 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HK 283

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+ 
Sbjct: 284 PSEERVREIIINAVRVEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV 343

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 344 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 376


>gi|10432587|dbj|BAB13815.1| ribonucleotide reductase small subunit [Lentinula edodes]
          Length = 418

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 27/350 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
                L     GE  +   ++ +L        L P++Y   W+ Y  A  + W   E+ +
Sbjct: 72  EELAALQKRFVGEVELPESEEPLLLESRRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDL 131

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   N L D ER  I R L FFA+S+ +V  N++      +   E R +   Q 
Sbjct: 132 SKDLHDWN--NRLNDSERFFISRVLAFFAASDGIVNENLLERFSNEVQVAEARCFYGFQI 189

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  +I +   D  E   LF+    +P I  KA WAL++             
Sbjct: 190 MMENIHSETYSLLIDTYIKDPVERDFLFDAIETIPCIKRKAEWALRWI------------ 237

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D    F + L  F  V EG++F   FA I  + +   M G+A   + I RDE +H +F 
Sbjct: 238 SDEHSVFGERLVAFAAV-EGIFFSGSFASIFWMKKRGLMPGLAFSNELISRDEGMHTDFA 296

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + ++        +        ++ EA  +E  +  + +P   +G+NA    QY++F
Sbjct: 297 CLLFSHLRR-------RPHPDTVERIIKEAVAIEQEFLTDALPVSLIGMNATLMCQYIEF 349

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +A+R    +G + L+  + NPF +M  +I L+ + NFFE RV++Y +   
Sbjct: 350 VADRLLVALGNKKLYN-STNPFDFMD-MISLQGKTNFFEKRVSDYSKAGV 397


>gi|146418573|ref|XP_001485252.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146390725|gb|EDK38883.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 418

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 27/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +L   +    + P+KY   W+ Y  A  + W   E+ +  D+  W   N L D+ER
Sbjct: 89  KEEPLLMENTRRFVMFPIKYHEIWKMYKKAEASFWTAEEIDLGKDMHDWN--NRLNDNER 146

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 147 YFISRILAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYI 206

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA+WAL++              D D  F + L  F  V 
Sbjct: 207 KDPKEADFLFNAIENIPCIKKKADWALRWIN------------DDDALFGERLVAFAAV- 253

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G++   + I RDE LH +F   + + ++          
Sbjct: 254 EGIFFSGSFASIFWLKKRGLMPGLSFSNELICRDEGLHTDFACLLFSHLQNRPDP----- 308

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             +    ++ EA  +E  +  + +P   +G+N     QY++F+A+R    +G + ++   
Sbjct: 309 --EIVEKIITEAVDIEKEFFTDALPISLLGMNCKLMCQYVEFVADRLLVALGNKKIYNVA 366

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 367 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 397


>gi|45184688|ref|NP_982406.1| AAL136Cp [Ashbya gossypii ATCC 10895]
 gi|44980034|gb|AAS50230.1| AAL136Cp [Ashbya gossypii ATCC 10895]
          Length = 422

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 97/337 (28%), Positives = 157/337 (46%), Gaps = 27/337 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +    ++ +L        L P+KY   W+ Y  A  + W   E+ +  D+  W   N +T
Sbjct: 91  KEQEKNEPLLMENKRRFVLFPIKYHDIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMT 148

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           ++ER  I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I
Sbjct: 149 ENERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLI 208

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   LFN    +P I  KA WA+++ Q            D D  F + L  F
Sbjct: 209 DTYIKDPKEADHLFNAIETIPEIKEKAEWAIRWIQ------------DKDALFAERLVAF 256

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             V EG++F   FA I  L +   M G+    + I RDE LH +F   +   +       
Sbjct: 257 AAV-EGIFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLFAHLNN----- 310

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             K   +    ++ EA  +E  Y  + +P   +G+N+    QY++F+A+R    +G +  
Sbjct: 311 --KPDTEIVEKIITEAVEIEKRYFQDAIPVALLGMNSSLMNQYVEFVADRLLVALGNKKY 368

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +  + NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 369 YNVS-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 403


>gi|294659365|ref|XP_461732.2| DEHA2G04268p [Debaryomyces hansenii CBS767]
 gi|199433907|emb|CAG90185.2| DEHA2G04268p [Debaryomyces hansenii]
          Length = 426

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/333 (28%), Positives = 155/333 (46%), Gaps = 27/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +L   +    L P+KY   W+ Y  A  + W   E+ +  D   W     L ++ER
Sbjct: 100 KEEPLLIENTRRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLGKDTHDWNE--KLNNNER 157

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 158 YFISRILAFFAASDGIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYI 217

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA+WAL++              D D  F + L  F  V 
Sbjct: 218 KDPKEADFLFNAIDNIPCIKKKADWALRWIN------------DDDALFGERLVAFAAV- 264

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   + + ++     +    
Sbjct: 265 EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHLQNRPDAV---- 320

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                  ++ EA  +E  +  + +P   +G+N     QY++F+A+R    +G + ++  T
Sbjct: 321 ---IVERIITEAVTIEKEFFVDALPISLLGMNCNLMCQYVEFVADRLLVALGNKKVYNVT 377

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 378 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 408


>gi|293343290|ref|XP_002725449.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Rattus
           norvegicus]
 gi|293355176|ref|XP_002728627.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Rattus
           norvegicus]
          Length = 390

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 28/338 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + +++++ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+    L 
Sbjct: 65  KPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALK 121

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I
Sbjct: 122 PDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLI 181

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   LFN    +P +  KA+WAL++                 +    +  V 
Sbjct: 182 DTYIKDSKEREYLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVA 228

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +       
Sbjct: 229 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------ 282

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +
Sbjct: 283 -HKPSEQRVKEIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKI 341

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           FK  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 342 FKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|118089009|ref|XP_001231545.1| PREDICTED: similar to small subunit ribonucleotide reductase
           isoform 1 [Gallus gallus]
          Length = 392

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/352 (25%), Positives = 162/352 (46%), Gaps = 28/352 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           +  T ++ +   +     +++ +L        + P++Y   W+ Y  A  + W   EV +
Sbjct: 53  SEGTPVTALCPPQVARGAEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDL 112

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W+S   L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q 
Sbjct: 113 SKDLQHWES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQI 169

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS  +  +I +   D  E   LFN    +P +  KA+WA+++             
Sbjct: 170 AMENIHSEMYSLLIDTYIKDSKEREFLFNAIETLPCVKKKADWAIRWIG----------- 218

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
               +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 219 --DKKATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 276

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             +   +         K  +++ + ++  A L+E  +  E +P   +G+N    +QY++F
Sbjct: 277 CLMFKHLIR-------KPSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEF 329

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R   ++G   ++K  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 330 VADRLMLELGFRKIYKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 379


>gi|7106399|ref|NP_033130.1| ribonucleoside-diphosphate reductase subunit M2 [Mus musculus]
 gi|132626|sp|P11157|RIR2_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|22218698|pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
           To Model The Reactive Diferrous State
 gi|22218699|pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
           To Model The Reactive Diferrous State
 gi|52696260|pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
           Subunit R2 Under Oxidizing Conditions. A Fully Occupied
           Dinuclear Iron Cluster.
 gi|52696261|pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
           Subunit R2 Under Reducing Conditions. A Fully Occupied
           Dinuclear Iron Cluster And Bound Acetate.
 gi|157834262|pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
 gi|50720|emb|CAA33707.1| M2 ribonucleotide reductase [Mus musculus]
 gi|200768|gb|AAA40062.1| ribonucleotide reductase subunit M2 [Mus musculus]
 gi|26354034|dbj|BAC40647.1| unnamed protein product [Mus musculus]
 gi|54887418|gb|AAH85136.1| Ribonucleotide reductase M2 [Mus musculus]
 gi|74139292|dbj|BAE40793.1| unnamed protein product [Mus musculus]
 gi|74151119|dbj|BAE27683.1| unnamed protein product [Mus musculus]
 gi|74179887|dbj|BAE36508.1| unnamed protein product [Mus musculus]
 gi|74188932|dbj|BAE39238.1| unnamed protein product [Mus musculus]
 gi|74189151|dbj|BAE39331.1| unnamed protein product [Mus musculus]
 gi|74206394|dbj|BAE24918.1| unnamed protein product [Mus musculus]
 gi|74211991|dbj|BAE40165.1| unnamed protein product [Mus musculus]
          Length = 390

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 94/338 (27%), Positives = 156/338 (46%), Gaps = 28/338 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
             +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+    L 
Sbjct: 65  NPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALK 121

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I
Sbjct: 122 PDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLI 181

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   LFN    +P +  KA+WAL++                 +    +  V 
Sbjct: 182 DTYIKDPKEREYLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVA 228

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +       
Sbjct: 229 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------ 282

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             K  +Q+ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +
Sbjct: 283 -HKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKI 341

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F+  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 342 FRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|289177074|ref|NP_001165948.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 2 [Homo
           sapiens]
          Length = 423

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/349 (28%), Positives = 163/349 (46%), Gaps = 28/349 (8%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
             G S     E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  
Sbjct: 86  QAGRSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSK 145

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   
Sbjct: 146 DLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILI 202

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E VHS  +  +I +   D  +   LFN    +P +  KA+WAL++               
Sbjct: 203 ENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------------- 249

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   
Sbjct: 250 DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 309

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +   +         K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A
Sbjct: 310 MFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVA 362

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +R   ++G   +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 363 DRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 409


>gi|328855581|gb|EGG04707.1| hypothetical protein MELLADRAFT_49061 [Melampsora larici-populina
           98AG31]
          Length = 385

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/344 (27%), Positives = 157/344 (45%), Gaps = 28/344 (8%)

Query: 11  QAGEKRVNVD-DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
             G   +  D ++ +L        L P+KY   W  Y  A  + W   E+ +  D+  W+
Sbjct: 41  FVGNPDITCDAEEPLLKEDGHRFVLFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWE 100

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L DDE+  IK  L FFA+S+ +V  N++      +   E R +   Q   E +HS 
Sbjct: 101 --NRLNDDEKHFIKHVLAFFAASDGIVNENLIERFSGEVQAAEARCFYGFQIMMENIHSE 158

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   +  E   LF+    +P I  KA+WAL++              D    F 
Sbjct: 159 VYSLLIDTYVREPIERSHLFDAIDTIPCIRKKADWALKWI------------SDKQSTFG 206

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + ++
Sbjct: 207 ERLIAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLE 265

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   +      + ++ +A  +E  +  + +P   +G+NA    QY++F+A+R    
Sbjct: 266 R-------RPHPDTVQAIISQAVEIEKEFLSDALPCKLIGMNADLMCQYIEFVADRLLVA 318

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +G +  +   ENPF +M E+I L  + NFFE RV++Y +   + 
Sbjct: 319 LGNDKFYN-AENPFDFM-EMISLSGKTNFFEKRVSDYAKAGVMT 360


>gi|301772278|ref|XP_002921557.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Ailuropoda melanoleuca]
          Length = 393

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 94/337 (27%), Positives = 157/337 (46%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
            +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  
Sbjct: 69  PSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKP 125

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I 
Sbjct: 126 EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLID 185

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LFN    +P +  KA+WAL++                 +    +  V +
Sbjct: 186 TYIKDSKEREFLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVAF 232

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +   +        
Sbjct: 233 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------- 285

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +Q+ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F
Sbjct: 286 HKPSEQRVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVF 345

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 346 RV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 380


>gi|71043760|ref|NP_001020911.1| ribonucleoside-diphosphate reductase subunit M2 [Rattus norvegicus]
 gi|77416595|sp|Q4KLN6|RIR2_RAT RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|68533806|gb|AAH99082.1| Ribonucleotide reductase M2 [Rattus norvegicus]
 gi|149051013|gb|EDM03186.1| rCG61374 [Rattus norvegicus]
          Length = 390

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 91/338 (26%), Positives = 157/338 (46%), Gaps = 28/338 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + +++++ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+    L 
Sbjct: 65  KPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALK 121

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I
Sbjct: 122 PDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLI 181

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   LFN    +P +  KA+WAL++                 +    +  V 
Sbjct: 182 DTYIKDSKEREYLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVA 228

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +       
Sbjct: 229 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------ 282

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             K  +Q+ + ++  +  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +
Sbjct: 283 -HKPSEQRVKEIITNSVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKI 341

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           FK  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 342 FKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|149728153|ref|XP_001502384.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit
           M2 (Ribonucleotide reductase small subunit)
           (Ribonucleotide reductase small chain) [Equus caballus]
          Length = 425

 Score =  273 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 92/337 (27%), Positives = 156/337 (46%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
            +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+    L  
Sbjct: 101 PSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALKP 157

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I 
Sbjct: 158 EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLID 217

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LFN    +P +  KA+WAL++                 +    +  V +
Sbjct: 218 TYIKDSKEREFLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVAF 264

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +   +        
Sbjct: 265 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------- 317

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F
Sbjct: 318 HKPSEQRVKEIIINAVRIEQEFLTEALPVRLIGMNCALMKQYIEFVADRLLLELGFNKVF 377

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 378 RV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 412


>gi|312381384|gb|EFR27142.1| hypothetical protein AND_06323 [Anopheles darlingi]
          Length = 390

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 161/349 (46%), Gaps = 29/349 (8%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +T LS ++  E+  +   + +L        + P++Y   W+ Y  A  + W   EV +  
Sbjct: 54  STALSEVE-PEQPFDPSIEPLLMDNPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSK 112

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+  W   + L   ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   
Sbjct: 113 DMKDW---DSLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAM 169

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E VHS  +  +I +   D  E   LFN    +P +  KA+WA+ +  +            
Sbjct: 170 ENVHSEMYSLLIDTYIRDPKERDFLFNAIETLPCVKRKADWAMNWISS------------ 217

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   
Sbjct: 218 -KKANYGERIVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 276

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +   +         K  +++   ++ +A ++E  +  + +P   +G+N     QY++F+A
Sbjct: 277 MFKYLVQ-------KPSRKRVTDIIRDAVMIEQEFLTKALPVDMLGMNCELMSQYIEFVA 329

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +R   ++G E ++  T+NPF +M E I L+ + NFFE +V EYQ+   +
Sbjct: 330 DRLLVELGCEKVYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 376


>gi|296421312|ref|XP_002840209.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636423|emb|CAZ84400.1| unnamed protein product [Tuber melanosporum]
          Length = 397

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 100/332 (30%), Positives = 159/332 (47%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L        L P+KY   W+ Y  A  + W+  E+ +  D+  W   + L DDER 
Sbjct: 66  DEPILTENKHRFVLFPIKYHEIWQMYKKAEASFWVAEEIDLSKDMHDW--SDRLNDDERY 123

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+V      +  PE R +   Q   E VHS T+  +I +   
Sbjct: 124 FISHVLAFFAASDGIVNENLVQRFSNEVQIPEARCFYGFQIMMENVHSETYSLLIDTYIK 183

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  +   LF+    +P I  KA+WA+++ +            D +  F Q L  F  V E
Sbjct: 184 DPKQRTYLFDAIDTIPCIKKKADWAIRWIE------------DRNSTFAQRLVAFAAV-E 230

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G++   + I RDE LH +F   + N +         +  
Sbjct: 231 GIFFSGSFASIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLFNHLNN-------RPS 283

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           QQ  + ++ EA  +E  +  E +P   +G+N+   +QY++F+A+R    +G    +  T 
Sbjct: 284 QQAVQDIIVEAVGIEQEFLTEALPCALLGMNSKLMKQYIEFVADRLLLSLGNPKFYNAT- 342

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV +YQ+   +
Sbjct: 343 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 373


>gi|74207686|dbj|BAE40088.1| unnamed protein product [Mus musculus]
          Length = 390

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 93/338 (27%), Positives = 156/338 (46%), Gaps = 28/338 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
             +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+    L 
Sbjct: 65  NPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALK 121

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I
Sbjct: 122 PDERHFISHALAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLI 181

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   LFN    +P +  KA+WAL++                 +    +  + 
Sbjct: 182 DTYIKDPKEREYLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVMA 228

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +       
Sbjct: 229 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------ 282

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             K  +Q+ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +
Sbjct: 283 -HKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKI 341

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F+  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 342 FRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|164659270|ref|XP_001730759.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966]
 gi|159104657|gb|EDP43545.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966]
          Length = 397

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 156/345 (45%), Gaps = 27/345 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             GE  +  +++ +L        L P++Y   W+ Y  A  + W   E+ +  DL  W  
Sbjct: 60  FVGEVDLPEEEEPILKENKGRFVLFPIRYHEIWQMYKKAEASFWTAEEIDLSKDLYDWD- 118

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N +TD ER  +   L FFA+S+ +V  N+V      +   E R +   Q   E +HS T
Sbjct: 119 -NRMTDPERHFVSHVLAFFAASDGIVNENLVERFSAEVQATEARCFYGFQIMMENIHSET 177

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   +      LFN    VP +  KA+WAL++              D    F +
Sbjct: 178 YSLLIDTYIREPERRDFLFNAIETVPVVKQKADWALRWI------------SDHRASFSE 225

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L  F  V EG++F   FA I  L +   M G++   + I RDE LH +F   + + +K 
Sbjct: 226 RLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLFSHLKK 284

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  +        ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    +
Sbjct: 285 -------RAHPDTVNRIITEAVDIEQDFLTDALPVSLIGMNARLMCQYIEFVADRLLVAL 337

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           G    +  + NPF +M E I L+ + NFFE RV +Y +    + D
Sbjct: 338 GNPKHYN-STNPFDFM-ENISLQGKSNFFERRVGDYAKAGVARAD 380


>gi|320164906|gb|EFW41805.1| ribonucleotide reductase m2 polypeptide [Capsaspora owczarzaki ATCC
           30864]
          Length = 352

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 96/349 (27%), Positives = 154/349 (44%), Gaps = 29/349 (8%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           T    +  G  ++ + D+ +L        L P++Y   W+ Y  A  + W   EV +  D
Sbjct: 17  TAEEALVNGLSKLEL-DEPLLKPNPHRFVLFPIQYHDVWKMYKKAEASFWTAEEVDLSKD 75

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           L  W   + L  +ER  I   L FFA+S+ +V  N++L     +  PE R +   Q   E
Sbjct: 76  LNDW---DKLKSEERHFISHVLAFFAASDGIVNENLLLRFSTEVQIPEVRSFYCFQIAIE 132

Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
            +HS  +  +I     D  E   LFN    +P +  KA WAL++              D 
Sbjct: 133 NIHSEMYSLLIDMYIKDSAEREKLFNAIETLPCVAKKAQWALRWI------------SDR 180

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
              F   L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   +
Sbjct: 181 RSTFAHRLIAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACML 239

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
              +     +            ++ +A  +E  +  + +P   +G+N    + Y++F+A+
Sbjct: 240 FGLLNNRPSN-------ADVLAIIKDAVAIEQEFLTDALPVALIGMNGGLMKTYIEFVAD 292

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           R    +G E  +K  ENPF +M  +I L+ + NFFE RV EYQ+   + 
Sbjct: 293 RLLVALGQEKHYKV-ENPFDFMD-LISLQGKTNFFERRVGEYQKPGVMS 339


>gi|115466138|ref|NP_001056668.1| Os06g0127900 [Oryza sativa Japonica Group]
 gi|55296211|dbj|BAD67929.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group]
 gi|113594708|dbj|BAF18582.1| Os06g0127900 [Oryza sativa Japonica Group]
 gi|186920368|gb|ACC95437.1| ribonucleotide diphosphate reductase small subunit 2 [Oryza sativa
           Japonica Group]
 gi|215706414|dbj|BAG93270.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222634884|gb|EEE65016.1| hypothetical protein OsJ_19968 [Oryza sativa Japonica Group]
          Length = 345

 Score =  272 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 155/333 (46%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L   SD   + P++Y   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 20  EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 77

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            +   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 78  FVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 137

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D+ E   LF     VP++  KA+WA+++              D  + F + L   +   E
Sbjct: 138 DDVEKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVE 183

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++ +         
Sbjct: 184 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLD------- 236

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + + ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++    
Sbjct: 237 ESRVQEIVADAVDIEREFVCDALPVALVGMNGELMSQYIEFVADRLLMALGCKKMYNVA- 295

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV +YQ+ + + 
Sbjct: 296 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 327


>gi|73979721|ref|XP_540076.2| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain
           (Ribonucleotide reductase small chain) isoform 1 [Canis
           familiaris]
          Length = 394

 Score =  272 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 91/337 (27%), Positives = 156/337 (46%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
            + +++ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  
Sbjct: 70  PSAEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKP 126

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I 
Sbjct: 127 EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLID 186

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LFN    +P +  KA+WAL++                 +    +  V +
Sbjct: 187 TYIKDSKEREFLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVAF 233

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +   +        
Sbjct: 234 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------- 286

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F
Sbjct: 287 HKPSEQRVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVF 346

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 347 RV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 381


>gi|225451453|ref|XP_002269951.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147804660|emb|CAN64484.1| hypothetical protein VITISV_012640 [Vitis vinifera]
          Length = 329

 Score =  272 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 156/333 (46%), Gaps = 29/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P++Y   WE Y  A  + W   EV +  D   W+    LT DE+ 
Sbjct: 6   EEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWE---NLTSDEKH 62

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  +  ++ S   
Sbjct: 63  FISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESYIK 122

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF+    +P +  KA WAL++              D  + F + L   +   E
Sbjct: 123 DPKEKNRLFHAIDTIPCVAKKAQWALRWI-------------DGSETFAERLLA-FACVE 168

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++ +         
Sbjct: 169 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS------- 221

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ + ++ ++  +E  +  + +P   VG+N+    QY++F+A+R    +G   ++  + 
Sbjct: 222 EERVKAIVADSVDIEREFVCDALPCALVGMNSALMSQYIEFVADRLLGALGYGKMYNVS- 280

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312


>gi|218197485|gb|EEC79912.1| hypothetical protein OsI_21460 [Oryza sativa Indica Group]
          Length = 345

 Score =  271 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L   SD   + P++Y   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 20  EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 77

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            +   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 78  FVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 137

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF     VP++  KA+WA+++              D  + F + L   +   E
Sbjct: 138 DGAEKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVE 183

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++ +         
Sbjct: 184 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLD------- 236

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + + ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++    
Sbjct: 237 ESRVQEIVADAVDIEREFVCDALPVALVGMNGELMSQYIEFVADRLLMALGCKKMYNVA- 295

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV +YQ+ + + 
Sbjct: 296 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 327


>gi|170089003|ref|XP_001875724.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82]
 gi|164648984|gb|EDR13226.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82]
          Length = 422

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 92/340 (27%), Positives = 156/340 (45%), Gaps = 27/340 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             GE  +   ++ +L        L P++Y   W+ Y  A  + W   E+ +  DL  W  
Sbjct: 75  FVGEVDLPESEEPLLKESKRRFVLFPIQYNEIWQMYKKAEASFWTAEEMDLSKDLHDWN- 133

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N + D+ER  I   L FFA+S+ +V  N++      +   E R +   Q   E +HS T
Sbjct: 134 -NRMNDNERHFISHVLAFFAASDGIVNENLLERFSNEVQAAEARCFYGFQIMMENIHSET 192

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I S   D  +   LF+    +P I  KA WAL++              D +  F +
Sbjct: 193 YSLLIDSYIKDPAQREYLFDAIETIPCIKRKAEWALKWI------------SDQESTFAE 240

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L  F  V EG++F   FA I  + +   M G+    + I RDE +H +F   + + +K 
Sbjct: 241 RLVAFAAV-EGIFFSGSFASIFWMKKRGLMPGLTFSNELISRDEGMHTDFACLLFSHLKR 299

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  +   +  + ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    +
Sbjct: 300 -------RPHPEVVKHIIVEAVKIEQEFLTDALPVKLIGMNADLMCQYIEFVADRLLVSL 352

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           G E  +    NPF +M  +I L+ + NFFE RV++Y +  
Sbjct: 353 GNEKHYN-KTNPFDFMD-MISLQGKTNFFEKRVSDYSKAG 390


>gi|76630259|ref|XP_584910.2| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos
           taurus]
 gi|297480610|ref|XP_002691527.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos
           taurus]
 gi|296482361|gb|DAA24476.1| ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus]
          Length = 389

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 92/337 (27%), Positives = 155/337 (45%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
            +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+    L  
Sbjct: 65  PSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALKS 121

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I 
Sbjct: 122 EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLID 181

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LFN    +P +  KA+WAL++                      +  V +
Sbjct: 182 TYIKDSKEREFLFNAIETMPCVKKKADWALRWIG-------------DKAATYGERVVAF 228

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +   +        
Sbjct: 229 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL------- 281

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F
Sbjct: 282 HKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVF 341

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 342 RV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 376


>gi|50311465|ref|XP_455757.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644893|emb|CAG98465.1| KLLA0F15103p [Kluyveromyces lactis]
          Length = 401

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 156/333 (46%), Gaps = 27/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L        L P+KY   WE Y  A  + W   E+ +  DL  W   N + ++ER
Sbjct: 74  KDEPLLVENKRRFVLFPIKYHEIWEAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENER 131

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 132 FFISRILAFFAASDGIVNENLVENFSAEVQAPEAKCFYGFQIMMENIHSETYSLLIDTYI 191

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WA+++ Q            D D  F + L  F  V 
Sbjct: 192 KDPKESEFLFNAIETIPQIKEKAEWAIRWIQ------------DDDALFGERLVAFAAV- 238

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   +   +K +        
Sbjct: 239 EGVFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPNP----- 293

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             +    ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R    +G +  F  T
Sbjct: 294 --EIVEKIITEAVEIEKRYFMDALPVSLLGMNADLMNQYVEFVADRLLVALGNKKYFNVT 351

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 352 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVI 382


>gi|297805560|ref|XP_002870664.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316500|gb|EFH46923.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp.
           lyrata]
          Length = 333

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 156/333 (46%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P++Y   WE Y  A  + W   EV +  D   W+  N L++DER 
Sbjct: 6   EEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLSNDERH 63

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 64  FIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIK 123

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF     +P +T KA WA+++     S                +  V +   E
Sbjct: 124 DNKERDHLFRAIETIPCVTKKAEWAMKWINGSQS--------------FAERIVAFACVE 169

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++ +         
Sbjct: 170 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLRTKLD------- 222

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ ++++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++  + 
Sbjct: 223 EERLKSIVCDAVEIEREFVCDALPCALVGMNRELMSQYIEFVADRLLTALGCGKVYGVS- 281

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 282 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 313


>gi|316971821|gb|EFV55552.1| ribonucleotide reductase R2 subunit [Trichinella spiralis]
          Length = 366

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/347 (28%), Positives = 163/347 (46%), Gaps = 28/347 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +P++     ++  ++ +L +      LLPL+Y   W  Y  A  + W   EV ++ D   
Sbjct: 33  TPMEQDAAAIDNCEEPLLRSNPKRFVLLPLEYPDIWAMYKKAEASFWTVEEVDLRKDAND 92

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W     L  DE+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VH
Sbjct: 93  W---AKLNKDEKHFISHVLAFFAASDGIVFENLVERFSQEIQVTEARFFYGFQIAIENVH 149

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E   LFN    +P +  KA+WAL++              D    
Sbjct: 150 SEMYSLLIDTYIRDPVERDFLFNAIETIPCVKKKADWALRWI------------GDRQSP 197

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F + L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + 
Sbjct: 198 FCERLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSH 256

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +K        K  + + R ++ EA  +E  +  + +P   +G+N     QY++++A+R  
Sbjct: 257 LKK-------KPTEDRVRQIITEAVSIEQEFLTDALPVRLIGMNCVLMSQYIEYVADRLL 309

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
            ++G   ++  +ENPF +M E+I L+ + NFFE RV EYQ+   +  
Sbjct: 310 VELGCSKVYN-SENPFDFM-EMISLEGKTNFFEKRVGEYQKAGVMAD 354


>gi|1710401|sp|P49730|RIR2_TOBAC RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleoside-diphosphate reductase R2
           subunit; AltName: Full=Ribonucleotide reductase small
           subunit
 gi|1044912|emb|CAA63194.1| ribonucleotide reductase R2 [Nicotiana tabacum]
          Length = 329

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 155/333 (46%), Gaps = 29/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L +  D   + P++Y   WE Y  A  + W   EV +  D   W++   LT  ER 
Sbjct: 6   EEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWET---LTPGERH 62

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  +  ++ S   
Sbjct: 63  FITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESYIK 122

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF      P +  KA WAL++              D  + F + L   +   E
Sbjct: 123 DSDEKSRLFRAVETNPCVEKKAKWALRWI-------------DGSETFAERLVA-FACVE 168

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++ +         
Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKL-------T 221

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ + ++ +A  +E  +  + +P   VG+N     +Y++F+A+R    +G + L+   +
Sbjct: 222 EERVKGIVADAVEIEREFVCDALPCALVGMNGDLMSKYIEFVADRLLDALGYDKLYN-AQ 280

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312


>gi|148230557|ref|NP_001080772.1| ribonucleotide reductase M2 polypeptide [Xenopus laevis]
 gi|28839018|gb|AAH47975.1| Rrm2-prov protein [Xenopus laevis]
          Length = 386

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 156/346 (45%), Gaps = 28/346 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +P     K     D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  
Sbjct: 53  TPTSKVPKNPRFTDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQH 112

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+S   L  DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 113 WES---LKTDERYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E   LFN    +P +  KA+WAL++                 Q 
Sbjct: 170 SEMYSLLIDTYIKDPKERGFLFNAIETLPCVKKKADWALRWI-------------SDKQA 216

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 217 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFRH 276

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +         K  +++   ++  A  +E  +  E +P   +G+N    +QY++F+A+R  
Sbjct: 277 LV-------HKPSEERVVQLITNAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLL 329

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++G   +FK + NPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 330 LELGFNKVFKAS-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 373


>gi|77748199|gb|AAI06683.1| MGC78958 protein [Xenopus laevis]
          Length = 406

 Score =  270 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 161/334 (48%), Gaps = 28/334 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + D+ +L        +LP++Y   W+ Y  A  + W   EV +  DL  W++   L  +E
Sbjct: 84  IQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---LKPEE 140

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 141 RYFISYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLLIDTY 200

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LFN    +P +  KA W+L++              D +  + + L  F  V
Sbjct: 201 IKDPKEREFLFNAIETLPCVKKKAEWSLRWI------------SDREAPYCERLVAFAAV 248

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +   +         K
Sbjct: 249 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFKHVV-------HK 300

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +Q+ R ++ +A  +E  +  E +P   +G+N    +QY++F+A+R   ++G + +FK 
Sbjct: 301 PSEQRVREIIIDAVKIEQEFLIEALPVELIGMNCTLMKQYIEFVADRLLLELGFKKIFK- 359

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +ENPF +M E I L+ + NFFE +V EYQ+   +
Sbjct: 360 SENPFDFM-ENISLEGKTNFFEKKVGEYQKMGVM 392


>gi|331245491|ref|XP_003335382.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
 gi|309314372|gb|EFP90963.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
          Length = 380

 Score =  270 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/334 (27%), Positives = 150/334 (44%), Gaps = 27/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D + +L        L P+KY   W  Y  A  + W   E+ +  D+  W   N L  DE+
Sbjct: 46  DQEPLLKEDGHRFVLFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWD--NKLNADEK 103

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             IK  L FFA+S+ +V  N++      +   E R +   Q   E +HS  +  +I +  
Sbjct: 104 HFIKHVLAFFAASDGIVNENLIERFSGEVQVAEARCFYGFQIMMENIHSEVYSLLIDTYV 163

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            +  E   LF+    +P I  KA+WAL +              D    F + L  F  V 
Sbjct: 164 REPTERAHLFDAIDTIPCIRKKADWALTWI------------SDKKSTFGERLIAFAAV- 210

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   +   ++        + 
Sbjct: 211 EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFTHLER-------RP 263

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                + ++ +A  +E  +  + +P   +G+NA    QY++F+A+R    +G E  +  T
Sbjct: 264 HPDTVQAIIAQAVEIEKEFLSDALPCKLIGMNADLMCQYIEFVADRLLVALGNEKFYNAT 323

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPF +M E+I L  + NFFE RV++Y +   + 
Sbjct: 324 -NPFDFM-EMISLSGKTNFFEKRVSDYAKAGVMT 355


>gi|168031987|ref|XP_001768501.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680214|gb|EDQ66652.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 331

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 90/334 (26%), Positives = 152/334 (45%), Gaps = 29/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
             + +L    +   + P+KY   WE Y  A  + W   EV +  D   W++   LTDDER
Sbjct: 6   QKEPILVENPNRFTMFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWET---LTDDER 62

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS  +  ++ +  
Sbjct: 63  HFISHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYI 122

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D+ E   LFN    +P +  KA+WAL++  +  S                +  + +   
Sbjct: 123 KDQAEKSRLFNAIETIPCVARKADWALKWIDSAGS--------------FAERILAFACV 168

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE LH +F   +   +  +        
Sbjct: 169 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLINKLS------ 222

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            +++   ++ EA  +E  +  E +    VG+N     +Y+ F+A+R    +G    +   
Sbjct: 223 -EERVYEIVCEAVEIEREFVCEALSCDLVGMNKILMSEYIDFVADRLLVSLGYRKKYN-A 280

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 281 LNPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 313


>gi|929959|gb|AAA74020.1| ribonuleotide reductase small subunit [Urechis caupo]
          Length = 399

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 156/334 (46%), Gaps = 28/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +++ +L        + P++Y   W+ Y  A  + W   EV +  D++ W+    L  +E+
Sbjct: 75  EEEPLLRDNPRRFVVFPIQYNDIWQMYKKAEASFWTAEEVDLSKDISDWE---KLKSEEK 131

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             +   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +  
Sbjct: 132 HFVSHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGYQIAVENIHSEMYSLLIDTYV 191

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P +  KA+WAL++                +Q    +  V +   
Sbjct: 192 KDPTERDFLFNAIETMPCVKEKADWALRWIN-------------DEQSSFGERVVAFAAV 238

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   + + +K        K 
Sbjct: 239 EGIFFSGSFASIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFSHLKN-------KP 291

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            Q++   ++ +A  +E ++  E +P   +G+N     QY++F+A+R   ++G   ++   
Sbjct: 292 SQERVYDIIRDAVRIEQSFLTEALPVNLIGMNCKLMAQYIEFVADRLLLELGCPKIWNV- 350

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ENPF +M   I L+ + NFFE RV EYQ+   + 
Sbjct: 351 ENPFDFMD-NISLEGKTNFFEKRVGEYQKMGVMS 383


>gi|149248382|ref|XP_001528578.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146448532|gb|EDK42920.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 422

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 93/333 (27%), Positives = 155/333 (46%), Gaps = 27/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L        + P++Y   W+ Y  A  + W   E+ +  D+  WK  N L ++ER
Sbjct: 97  KDEPLLKENKRRYVMFPIRYHEIWQMYKKAEASFWTAEEIDLGKDMHDWK--NKLNENER 154

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 155 FFISRILAFFAASDGIVNENLVENFSAEVQIPEAKSFYGFQIMMENIHSETYSLLIDTYI 214

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA+WA+++                D     +  V +   
Sbjct: 215 KDPKEADFLFNAIDNIPQIKKKADWAIRWIN-------------DDNALFAERLVAFAAV 261

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   + + ++          
Sbjct: 262 EGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHLENRPDP----- 316

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             +    ++ EA  +E  +  + +P   +G+N     QY++F+A+R    +G E ++K T
Sbjct: 317 --KIVEKIISEAVEIEKEFFTDALPVSLLGMNCKLMCQYVEFVADRLLVALGNEKIYKVT 374

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 375 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 405


>gi|118089007|ref|XP_419948.2| PREDICTED: similar to small subunit ribonucleotide reductase
           isoform 2 [Gallus gallus]
          Length = 384

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 90/335 (26%), Positives = 156/335 (46%), Gaps = 28/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
            +++ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L  +E
Sbjct: 62  AEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPEE 118

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 119 KYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTY 178

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LFN    +P +  KA+WA+++                 +    +  V +  
Sbjct: 179 IKDSKEREFLFNAIETLPCVKKKADWAIRWIG-------------DKKATYGERVVAFAA 225

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +   +         K
Sbjct: 226 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLIR-------K 278

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ + ++  A L+E  +  E +P   +G+N    +QY++F+A+R   ++G   ++K 
Sbjct: 279 PSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFRKIYKV 338

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 339 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 371


>gi|110763195|ref|XP_397443.3| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 isoform
           1 [Apis mellifera]
          Length = 384

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 89/352 (25%), Positives = 158/352 (44%), Gaps = 28/352 (7%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           N   +  +   E + N + + +L        + P+++   W+ Y  A  + W   EV + 
Sbjct: 46  NTKAIQNMYLKENKFNPELEPLLKENPRRFVVFPIQWPDIWQMYKKAEASFWTVEEVDLS 105

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+  W   N LT  E+  I   L FFA+S+ +V  N+V    + +   E R +   Q  
Sbjct: 106 KDVFDW---NNLTASEKHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQVA 162

Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E VHS  +  +I +   D  E   LFN    +P +  KA+WAL +              
Sbjct: 163 MENVHSEMYSLLIDTYIADAKERDFLFNAIENLPCVAKKAHWALNWIN------------ 210

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             +     +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F  
Sbjct: 211 -HESATFPERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 269

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +   I  +          ++  +++ +A  +E  +  + +P   +G+N     QY++F+
Sbjct: 270 LMFKHIVQKPSC-------ERVTSIIKDAVKIEQEFLTDALPVEMIGMNCKLMCQYIEFV 322

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           A+R   ++G + ++  +ENPF +M   I L+ + NFFE +V EYQ+   ++ 
Sbjct: 323 ADRLLVELGCKKIY-MSENPFDFMEH-ISLEGKTNFFEKKVGEYQKWGVMQD 372


>gi|15232077|ref|NP_189342.1| TSO2 (TSO meaning 'ugly' in Chinese); oxidoreductase/
           ribonucleoside-diphosphate reductase/ transition metal
           ion binding [Arabidopsis thaliana]
 gi|75273949|sp|Q9LSD0|RIR2C_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain C;
           AltName: Full=Ribonucleoside-diphosphate reductase TSO2
           subunit; AltName: Full=Ribonucleotide reductase small
           subunit C
 gi|9279629|dbj|BAB01087.1| ribonucleotide reductase [Arabidopsis thaliana]
 gi|17380726|gb|AAL36193.1| putative ribonucleotide reductase small subunit [Arabidopsis
           thaliana]
 gi|21436297|gb|AAM51287.1| putative ribonucleotide reductase small subunit [Arabidopsis
           thaliana]
 gi|332643740|gb|AEE77261.1| Ribonucleoside-diphosphate reductase small chain C [Arabidopsis
           thaliana]
          Length = 332

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 151/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+ Y   WE Y  A  + W   EV +  D   W+  N L D ER 
Sbjct: 6   EEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLNDGERH 63

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 64  FIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIK 123

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF     +P +  KA WA+++                  +   +  + +   E
Sbjct: 124 DNKERDHLFRAIETIPCVAKKAQWAMKWIDG--------------SQTFAERIIAFACVE 169

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +          L TK  
Sbjct: 170 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYT-------LLKTKLS 222

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ ++++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++  T 
Sbjct: 223 EERVKSIVCDAVEIEREFVCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGVT- 281

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV +YQ+ + + 
Sbjct: 282 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 313


>gi|320580024|gb|EFW94247.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR)
           complex [Pichia angusta DL-1]
          Length = 408

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 97/333 (29%), Positives = 152/333 (45%), Gaps = 27/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L D+ER
Sbjct: 80  KDEPLLVENKRRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDNER 137

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             + R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 138 YFVSRVLAFFAASDGIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYV 197

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WA+++              D +  F + L  F  V 
Sbjct: 198 KDPKEAEFLFNAIETIPCIKEKAEWAMRWIN------------DEEALFAERLVAFAAV- 244

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   + + +           
Sbjct: 245 EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHLNN-------TP 297

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                  ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G +  +  T
Sbjct: 298 NNDIVLKIITEAVDIEKRYFTDALPVNLLGMNCSLMCQYVEFVADRLLLSLGCKKHYNAT 357

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 358 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 388


>gi|50286273|ref|XP_445565.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524870|emb|CAG58476.1| unnamed protein product [Candida glabrata]
          Length = 400

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 155/334 (46%), Gaps = 27/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +LN   D   L P+KY   W+ Y  A  + W   E+ +  DL  W   N L ++ER
Sbjct: 74  KDEPLLNDDPDRLTLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN--NRLNENER 131

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V         PE + +   Q   E +HS T+  +I +  
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEAVIPEAKAFYGFQIMIENIHSETYSLLIDTYI 191

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WAL++              +++  F + L   +   
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWI------------ANSEALFAERLVA-FAAI 238

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   +   +         K 
Sbjct: 239 EGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFAHLN-------HKP 291

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             +    ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G + ++   
Sbjct: 292 DPEVVERIVTEAVEIEQRYFLDALPVALLGMNAQLMNQYVEFVADRLLVAFGNKKVYNV- 350

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ENPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 351 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|148232385|ref|NP_001085389.1| ribonucleotide reductase M2, gene 1 [Xenopus laevis]
 gi|48735122|gb|AAH72071.1| MGC78958 protein [Xenopus laevis]
          Length = 406

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 161/334 (48%), Gaps = 28/334 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + D+ +L        +LP++Y   W+ Y  A  + W   EV +  DL  W++   L  +E
Sbjct: 84  IQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---LKPEE 140

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 141 RYFIAYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLLIDTY 200

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LFN    +P +  KA W+L++              D +  + + L  F  V
Sbjct: 201 IKDPKEREFLFNAIETLPCVKKKAEWSLRWI------------SDREAPYCERLVAFAAV 248

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +   +         K
Sbjct: 249 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFKHVV-------HK 300

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +Q+ R ++ +A  +E  +  E +P   +G+N    +QY++F+A+R   ++G + +FK 
Sbjct: 301 PSEQRVREIIIDAVKIEQEFLTEALPVELIGMNCTLMKQYIEFVADRLLLELGFKKIFK- 359

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +ENPF +M E I L+ + NFFE +V EYQ+   +
Sbjct: 360 SENPFDFM-ENISLEGKTNFFEKKVGEYQKMGVM 392


>gi|75224904|sp|Q6Y657|RIR2B_ARATH RecName: Full=Putative ribonucleoside-diphosphate reductase small
           chain B; AltName: Full=Ribonucleoside-diphosphate
           reductase R2B subunit; AltName: Full=Ribonucleotide
           reductase small subunit B
 gi|37729626|gb|AAO62422.1| ribonucleotide reductase small subunit [Arabidopsis thaliana]
          Length = 333

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 154/333 (46%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P++Y   WE Y  A  + W   EV +  D   W+  N LT+DER 
Sbjct: 6   EEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTNDERH 63

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 64  FIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIK 123

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF     +P +T KA WA+++     S                +  V +   E
Sbjct: 124 DNKERDHLFRAIETIPCVTKKAEWAMKWINGSQS--------------FAERIVAFACVE 169

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++ +         
Sbjct: 170 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLRTKLD------- 222

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + + ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++  + 
Sbjct: 223 EDRLKAIVCDAVEIEREFVCDALPCALVGMNRELMSQYIEFVADRLLAALGCAKVYGVS- 281

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 282 NPFDWM-ELISLQGKTNFFEKRVGEYQKASIMS 313


>gi|326437649|gb|EGD83219.1| ribonucleotide reductase M2 B [Salpingoeca sp. ATCC 50818]
          Length = 408

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 90/337 (26%), Positives = 160/337 (47%), Gaps = 28/337 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
              +  + +L        +LP+++   W  Y  A  + W   EV +  DL  W+   GL 
Sbjct: 80  DEEIAAEPLLRENPSRFVILPIQHRQVWSMYKKAVASFWTAEEVDLSRDLDHWR---GLK 136

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           D E+  IK  L FFA+S+ +V  N+V      +  PE R +   Q   E +HS  +  +I
Sbjct: 137 DTEQHFIKHVLAFFAASDGIVNENLVERFMCEVQLPEARCFYGFQIMIENIHSEMYSLLI 196

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   LFN    +P++  KA WA+++              D  +    +  V 
Sbjct: 197 DTYINDPQEKHMLFNAVETLPAVKRKAEWAMRWI-------------DHKRASFAERVVA 243

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+ +  + I RDE LH +F   + + +  + P  
Sbjct: 244 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTQSNELISRDEGLHCDFACLMFSMLHKKPP-- 301

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
                +++   ++ +A  +E  +  E +P   +G+N+    +Y++F+++R    +G + +
Sbjct: 302 -----KERVIGIIMDAVEIEQEFLTEALPVSLLGMNSTLMREYIEFVSDRLLVSLGYDKV 356

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +  T NPFP+M E I ++ + NFFE RV+EYQ+   +
Sbjct: 357 YNAT-NPFPFM-ENISIEGKTNFFERRVSEYQKSGVM 391


>gi|297818266|ref|XP_002877016.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322854|gb|EFH53275.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 329

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 151/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+ Y   WE Y  A  + W   EV +  D   W+  N L D ER 
Sbjct: 3   EEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NNLNDGERH 60

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 61  FIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIK 120

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF     +P +  KA WA+++                  +   +  + +   E
Sbjct: 121 DNKERDHLFRAIETIPCVAKKAQWAMKWIDG--------------SQTFAERIIAFACVE 166

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +          L TK  
Sbjct: 167 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYT-------LLKTKLS 219

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ ++++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++  T 
Sbjct: 220 EERVKSIVCDAVEIEREFVCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGVT- 278

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV +YQ+ + + 
Sbjct: 279 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 310


>gi|68481406|ref|XP_715342.1| hypothetical protein CaO19.5801 [Candida albicans SC5314]
 gi|68481537|ref|XP_715277.1| hypothetical protein CaO19.13223 [Candida albicans SC5314]
 gi|46436893|gb|EAK96248.1| hypothetical protein CaO19.13223 [Candida albicans SC5314]
 gi|46436961|gb|EAK96315.1| hypothetical protein CaO19.5801 [Candida albicans SC5314]
 gi|238882096|gb|EEQ45734.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
           albicans WO-1]
          Length = 413

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        + P++Y   W  Y  A  + W   E+ +  DL  W   N L ++ER 
Sbjct: 89  EEPLLVENKRRYVMFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWN--NKLNENERY 146

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N++      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 147 FISRVLAFFAASDGIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIK 206

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LFN    +P I  KA+WA+++ Q              D+    +  V +   E
Sbjct: 207 DPQEADYLFNAIANIPCIQKKADWAIKWIQ-------------DDEALYGERLVAFAAVE 253

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +   ++        +  
Sbjct: 254 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFAHLQN-------RPS 306

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G + ++  T 
Sbjct: 307 PEIVERIITEAVDVEKEYFTDALPVSLLGMNCNLMCQYIEFVADRLLLALGNKKVYNVT- 365

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 366 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 396


>gi|254572986|ref|XP_002493602.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR)
           complex [Pichia pastoris GS115]
 gi|238033401|emb|CAY71423.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR)
           complex [Pichia pastoris GS115]
 gi|328354568|emb|CCA40965.1| ribonucleoside-diphosphate reductase subunit M2 [Pichia pastoris
           CBS 7435]
          Length = 400

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 97/333 (29%), Positives = 156/333 (46%), Gaps = 27/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L        L PLKY   W+ Y  A  + W   E+ +  DL  W   N + D+E+
Sbjct: 74  KDEPLLVENKRRFVLFPLKYHDIWQMYKQAEASFWTAEEIDLGKDLHDWN--NRMNDNEK 131

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSAEVQLPEAKCFYGFQIMMENIHSETYSLLIDTYI 191

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA+WA+++              D D  F + L  F  V 
Sbjct: 192 KDPKESEFLFNAIETIPCIKEKADWAMRWI------------SDDDALFAERLVAFAAV- 238

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   + + +         + 
Sbjct: 239 EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHLNN-------RA 291

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            ++    ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G + ++   
Sbjct: 292 SEEIVEKIITEAVEIEKRYFTDALPVSLLGMNCSLMCQYVEFVADRLLVALGNKKVYNVN 351

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 352 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382


>gi|241166485|ref|XP_002409876.1| ribonucleotide reductase, beta subunit, putative [Ixodes
           scapularis]
 gi|215494664|gb|EEC04305.1| ribonucleotide reductase, beta subunit, putative [Ixodes
           scapularis]
          Length = 376

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 93/337 (27%), Positives = 153/337 (45%), Gaps = 28/337 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            +   D+ +L        + P+ Y   W  Y  A  + W   EV +  DL  W   +GL 
Sbjct: 51  ELEKQDEPLLRENPRRFVMFPIVYEDIWRMYKKAEASFWTVEEVDLGKDLPHW---DGLK 107

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  +  +I
Sbjct: 108 PEERHFISHILAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQMAIENVHSEMYSLLI 167

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   LFN    +P I  KA+WAL +                      +  V 
Sbjct: 168 DTYIKDPSERDRLFNAVETMPCIKRKADWALNWI-------------SNRSATFGERIVA 214

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE LH +F   + + +       
Sbjct: 215 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFSHLVN----- 269

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             K  Q + R ++ +A ++E  +  + +P   +G+N    ++Y++F+A+R   ++G E +
Sbjct: 270 --KPSQARVRQIICDAVVIEQEFLTDALPVALIGMNCELMKRYIEFVADRLLVELGCEKV 327

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +  +ENPF +M   I L+ + NFFE RV EYQ+   +
Sbjct: 328 YN-SENPFDFMEH-ISLEGKTNFFEKRVGEYQKAGVM 362


>gi|302696699|ref|XP_003038028.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8]
 gi|300111725|gb|EFJ03126.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8]
          Length = 377

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 93/335 (27%), Positives = 153/335 (45%), Gaps = 27/335 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +  +D+ +L        L P++Y   W  Y  A  + W   E+ +  D+  W     L D
Sbjct: 57  IRAEDEPLLRESQRRFVLFPIQYDDIWAMYKQAQASFWTSEEITLAYDMRDW--TERLDD 114

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER  IK  L FFA+S+ +V  N+V      +   E R +   Q   E +HS T+  +I 
Sbjct: 115 NERNFIKHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMMENIHSETYSLLID 174

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LF     +P I  KA+WAL++              D    F + L  F 
Sbjct: 175 TYIKDPQERDHLFAAIETIPCIKRKADWALRWI------------SDKSSTFAERLVAFA 222

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++F   FA I  L +   M G+    + I RDE +H  F   + + ++       
Sbjct: 223 AV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHTEFACLLFSHLR------- 274

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            +      + ++ EA  +E  +  + +P   +G+NA    QY++F+A+R  + +G   ++
Sbjct: 275 HRPHPSVVQRIVKEAVAIEHEFLSDALPVSLIGMNAALMRQYIEFVADRLLYSLGQNKIY 334

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
             T NPF +M  +I L+ + NFFE RV+EY +   
Sbjct: 335 NAT-NPFDFMD-MISLQGKTNFFEKRVSEYAKANV 367


>gi|296809816|ref|XP_002845246.1| ribonucleotide reductase [Arthroderma otae CBS 113480]
 gi|238842634|gb|EEQ32296.1| ribonucleotide reductase [Arthroderma otae CBS 113480]
          Length = 405

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 96/343 (27%), Positives = 156/343 (45%), Gaps = 30/343 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++A   +    ++ +L        L P+KY    E Y  A  + W   E+ +  D+  W 
Sbjct: 65  VKAKTPKELEAEEPLLQENPQRFVLFPIKYH---EMYKKAEASFWTAEEIDLSKDIHDWN 121

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L DDER  I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS 
Sbjct: 122 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSE 179

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I +   ++ +   LF     +P I  KA+WA+++ Q            D D  F 
Sbjct: 180 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKDSTFA 227

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + + 
Sbjct: 228 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLN 286

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   +        ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    
Sbjct: 287 -------YRPDPTAVEAIITEAVSIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 339

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +G +  +  T NPF +M   I L  + NFFE RV +YQ+   +
Sbjct: 340 LGNKKFYN-TTNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 380


>gi|327261309|ref|XP_003215473.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 1 [Anolis carolinensis]
          Length = 394

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 93/336 (27%), Positives = 154/336 (45%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N  D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L  D
Sbjct: 71  NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 127

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 128 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 187

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WA+++                      +  V + 
Sbjct: 188 YIKDPKEREYLFNAIETLPCVKRKADWAMRWIG-------------DKHATYGERVVAFA 234

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +   +         
Sbjct: 235 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------H 287

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   ++K
Sbjct: 288 KPSEERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK 347

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 348 -AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 381


>gi|241951066|ref|XP_002418255.1| ribonucleoside-diphosphate reductase small chain 1, putative;
           ribonucleotide reductase r2 subunit 1, putative;
           ribonucleotide reductase small subunit 1, putative
           [Candida dubliniensis CD36]
 gi|223641594|emb|CAX43555.1| ribonucleoside-diphosphate reductase small chain 1, putative
           [Candida dubliniensis CD36]
          Length = 413

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 154/332 (46%), Gaps = 27/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        + P++Y   W  Y  A  + W   E+ +  DL  W   N L ++ER 
Sbjct: 89  EEPLLVENKRRYVMFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWN--NKLNENERY 146

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            + R L FFA+S+ +V  N++      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 147 FVSRVLAFFAASDGIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIK 206

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LFN    +P I  KA+WA+++ Q              D+    +  V +   E
Sbjct: 207 DPQEADYLFNAIANIPCIQKKADWAIKWIQ-------------DDEALYGERLVAFAAVE 253

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +   ++        +  
Sbjct: 254 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFAHLQN-------RPS 306

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G + ++  T 
Sbjct: 307 PEIVEKIITEAVDVEKEYFTDALPVSLLGMNCNLMCQYIEFVADRLLLALGNKKVYNVT- 365

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 366 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 396


>gi|255711354|ref|XP_002551960.1| KLTH0B03938p [Lachancea thermotolerans]
 gi|238933338|emb|CAR21522.1| KLTH0B03938p [Lachancea thermotolerans]
          Length = 403

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 98/333 (29%), Positives = 156/333 (46%), Gaps = 27/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N + ++ER
Sbjct: 76  KEEPLLMENKRRFVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENER 133

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R + FFA+S+ +V  N+V      + +PE + +   Q   E +HS T+  +I +  
Sbjct: 134 FFISRVIAFFAASDGIVNENLVENFSAEVQSPEAKCFYGFQIMMENIHSETYSLLIDTYI 193

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WA+++ Q            D D  F + L  F  V 
Sbjct: 194 KDPKESDFLFNAIETIPQIKEKAEWAIRWIQ------------DEDALFAERLVAFAAV- 240

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   +   +K +        
Sbjct: 241 EGVFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 295

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                  ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R    +G +  +  T
Sbjct: 296 --AIIERIITEAVEIEQRYFRDALPVSLLGMNADLMNQYVEFVADRLLVALGNQKFYNVT 353

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            NPF +M E I L  + NFFE RV++YQ+   +
Sbjct: 354 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 384


>gi|52077136|dbj|BAD46182.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group]
 gi|52077275|dbj|BAD46317.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group]
 gi|186920364|gb|ACC95435.1| ribonucleotide diphosphate reductase small subunit 1 [Oryza sativa
           Japonica Group]
          Length = 339

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 154/333 (46%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L   S+   + P++Y   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 14  EEPLLAESSERFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 71

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 72  FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF     VP++  KA+WA+++              D  + F + L   +   E
Sbjct: 132 DGAEKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVE 177

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++ +         
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLD------- 230

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++    
Sbjct: 231 EARVREIVADAVDIEREFVCDALPVALVGMNGDLMSQYIEFVADRLLMALGCKKMYNVA- 289

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV +YQ+ + + 
Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 321


>gi|254586079|ref|XP_002498607.1| ZYRO0G14388p [Zygosaccharomyces rouxii]
 gi|238941501|emb|CAR29674.1| ZYRO0G14388p [Zygosaccharomyces rouxii]
          Length = 412

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 152/334 (45%), Gaps = 27/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N +++ ER
Sbjct: 87  KDEPLLVENKRRFVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLDDWN--NKMSEGER 144

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 145 YFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYS 204

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WA+++ Q              D     +  V +   
Sbjct: 205 RDTEESEFLFNAIENIPPIKEKAEWAIRWIQ-------------DDTALYAERLVAFAAV 251

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   +   +K        + 
Sbjct: 252 EGVFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLFAHLKN-------RP 304

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                  ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R    +G E  +  T
Sbjct: 305 SPDIVERIITEAVSIEKRYFEDALPVALLGMNAALMNQYVEFVADRLLVALGNEKYYNVT 364

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 365 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 396


>gi|328771482|gb|EGF81522.1| hypothetical protein BATDEDRAFT_16297 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 336

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 103/345 (29%), Positives = 164/345 (47%), Gaps = 27/345 (7%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P++   +   V ++ +L      + L P+KY   W  Y  A  + W   EV +  D   W
Sbjct: 2   PLELPSESTLVQNEPILTPDPRRSVLFPIKYPAVWRMYKKAEASFWTAEEVDLSKDTLDW 61

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           + +  LTDDER  I R L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS
Sbjct: 62  EER--LTDDERYFISRVLAFFAASDGIVNENLVERFSQDVHIPEARYFYDFQIMIENIHS 119

Query: 129 HTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
             +  +I +   D  E   LF+    VP I  KA+WAL++              D    F
Sbjct: 120 EMYSLLIDTYIKDRKERAFLFDAIDTVPCIRKKADWALRWI------------SDKKSSF 167

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
            + L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   +   +
Sbjct: 168 GERLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFTLL 226

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
                    K      + ++HEA  +E  ++ E++P   +G+NA   +QY++F+A+R   
Sbjct: 227 NN-------KPTDSVIQQIIHEAVTIEQEFSTESLPVALIGMNANLMKQYIEFVADRLFI 279

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ++G+   +    NPF +M  +I L+ + NFFE RV EYQ+   + 
Sbjct: 280 ELGMPKKYGVG-NPFDFMD-MISLQGKTNFFEKRVGEYQKSGVMN 322


>gi|45360749|ref|NP_989048.1| ribonucleotide reductase M2, gene 1 [Xenopus (Silurana) tropicalis]
 gi|38174078|gb|AAH61353.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana)
           tropicalis]
          Length = 378

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 98/339 (28%), Positives = 161/339 (47%), Gaps = 28/339 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K   + D+ +L        +LP++Y   W+ Y  A  + W   EV +  DL  W+    L
Sbjct: 52  KDPRIQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLPHWE---AL 108

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +
Sbjct: 109 KPEERYFISYVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 168

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E   LFN    +P +  KA WAL++              D +  F + +  
Sbjct: 169 IDTYIKDPKEREFLFNAIETLPCVKKKAEWALRWI------------SDREAPFCERIVA 216

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  V EG++F   FA I  L +   M G+    + I RDE LH +F   +   +      
Sbjct: 217 FAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFKHVV----- 270

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
              K  +Q+ R ++ +A  +E  +  E +P   +G+N    +QY++F+A+R   ++G + 
Sbjct: 271 --HKPSEQRVREIIIDAVKIEQEFLTEALPVELIGMNCKLMKQYIEFVADRLLLELGFKK 328

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +FK +ENPF +M E I L+ + NFFE +V EYQ+   + 
Sbjct: 329 IFK-SENPFDFM-ENISLEGKTNFFEKKVAEYQKMGVMS 365


>gi|156387377|ref|XP_001634180.1| predicted protein [Nematostella vectensis]
 gi|156221260|gb|EDO42117.1| predicted protein [Nematostella vectensis]
          Length = 341

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 157/343 (45%), Gaps = 28/343 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              + R N +D+ +L        +LP++Y   W+ Y  A  + W   EV +  D   +  
Sbjct: 11  SRAKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDF-- 68

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L DDER+ +   L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  
Sbjct: 69  -AKLNDDERMFVSHVLAFFAASDGIVNENLVECFSQEVQIPEARCFYGFQIAIENIHSEM 127

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I SL  D+ E   LFN    +P +  KA+WAL +                 +    
Sbjct: 128 YSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWIN-------------PQRASFG 174

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +  
Sbjct: 175 ERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMYKYLVN 234

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  K  ++  R ++ +A ++E  +    +P   +G+N     QY++F+A+R    +
Sbjct: 235 -------KPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVAL 287

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             + ++   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 288 NCQKVYNV-ENPFDFM-ENISLEGKTNFFEKRVGEYQKSGVMS 328


>gi|168015485|ref|XP_001760281.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688661|gb|EDQ75037.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 330

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/334 (26%), Positives = 152/334 (45%), Gaps = 29/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +L    +   + P+KY   WE Y  A  + W   EV +  D   W+    LTD+ER
Sbjct: 5   QEEPILMENPNRFTMFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWE---ALTDNER 61

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS  +  ++ +  
Sbjct: 62  HFISHVLAFFAASDGIVLENLAIRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYI 121

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P +T KA WAL++  +  S                +  + +   
Sbjct: 122 KDHAEKNRLFNAIETIPCVTKKAEWALKWIHSAGS--------------FAERILAFACV 167

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE LH +F   +   +  +        
Sbjct: 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLNNKLS------ 221

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            + +   ++ EA ++E  +  E +    VG+N     +Y+ F+A+R    +G    +  +
Sbjct: 222 -EDRVYEIVCEAVVIEQEFVCEALSCDLVGMNKTLMSEYIDFVADRLLVSLGYPKKYN-S 279

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 280 HNPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312


>gi|212723480|ref|NP_001131892.1| hypothetical protein LOC100193273 [Zea mays]
 gi|194692834|gb|ACF80501.1| unknown [Zea mays]
 gi|195624040|gb|ACG33850.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
          Length = 339

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 156/332 (46%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   SD   + P+++   WE Y  A  + W   EV +  D   W     L+ DER  
Sbjct: 15  EPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWDE--ALSPDERHF 72

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   D
Sbjct: 73  ISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRD 132

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LF     VP++  KA+WA+++              D  + F + L   +   EG
Sbjct: 133 DVEKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVEG 178

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   + + ++ +         +
Sbjct: 179 IFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDVLRSKLD-------E 231

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            + RT++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++  T N
Sbjct: 232 ARVRTIVADAVDIEREFVCDALPVSLVGMNGDLMSQYIEFVADRLLMALGCKKMYNVT-N 290

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF WM E+I L+ + NFFE RV +YQ+ + + 
Sbjct: 291 PFDWM-ELISLQGKTNFFEKRVGDYQKASVMN 321


>gi|327261313|ref|XP_003215475.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 3 [Anolis carolinensis]
          Length = 391

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/337 (27%), Positives = 153/337 (45%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
               D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L  
Sbjct: 67  PRRTDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKP 123

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I 
Sbjct: 124 DEKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLID 183

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LFN    +P +  KA+WA+++                      +  V +
Sbjct: 184 TYIKDPKEREYLFNAIETLPCVKRKADWAMRWIG-------------DKHATYGERVVAF 230

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +   +        
Sbjct: 231 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------- 283

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   ++
Sbjct: 284 HKPSEERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIY 343

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           K  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 344 K-AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 378


>gi|170032272|ref|XP_001844006.1| ribonucleoside-diphosphate reductase small chain [Culex
           quinquefasciatus]
 gi|167872122|gb|EDS35505.1| ribonucleoside-diphosphate reductase small chain [Culex
           quinquefasciatus]
          Length = 391

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 157/343 (45%), Gaps = 28/343 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++AG+   +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W+
Sbjct: 60  LKAGQAPFDPSIEPLLKDNPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLGDWE 119

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L   E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 120 ---KLKSGEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSE 176

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  E   LFN    +P +  KA+WA+ +  +                  
Sbjct: 177 MYSLLIDTYIRDPKEREYLFNAIETLPCVKKKADWAMNWISS-------------KHANF 223

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   + 
Sbjct: 224 GERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFRYLV 283

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   K  +++   ++ EA ++E  +  + +P   +G+N     QY++F+A+R   +
Sbjct: 284 Q-------KPSKERVLEIIREAVVIEQEFLTKALPVDLLGMNCELMSQYIEFVADRLLLE 336

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +G E ++  T+NPF +M E I L+ + NFFE +V EYQ+   +
Sbjct: 337 LGNEKIYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 377


>gi|18079279|ref|NP_525111.1| ribonucleoside diphosphate reductase small subunit [Drosophila
           melanogaster]
 gi|12644287|sp|P48592|RIR2_DROME RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|10727628|gb|AAF58599.2| ribonucleoside diphosphate reductase small subunit [Drosophila
           melanogaster]
 gi|15292183|gb|AAK93360.1| LD41588p [Drosophila melanogaster]
 gi|220946286|gb|ACL85686.1| CG8975-PA [synthetic construct]
 gi|220955972|gb|ACL90529.1| RnrS-PA [synthetic construct]
          Length = 393

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++      +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W 
Sbjct: 62  MEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L DDER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  +   LFN    +P++  KA+WAL +  +                  
Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWISS-------------KSANF 225

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +   + 
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLV 285

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   +  +++   ++ +A  +E  +  + +P   +G+N     QY++F+A+R   +
Sbjct: 286 Q-------RPKRERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +G+  ++  T+NPF +M E+I L  + NFFE +V EYQ+   + 
Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVGEYQRMGVVS 380


>gi|321263777|ref|XP_003196606.1| ribonucleoside-diphosphate reductase [Cryptococcus gattii WM276]
 gi|317463083|gb|ADV24819.1| Ribonucleoside-diphosphate reductase, putative [Cryptococcus gattii
           WM276]
          Length = 401

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/341 (27%), Positives = 157/341 (46%), Gaps = 27/341 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             G+      D+ +L   +    L P+KY   W+ Y  A  + W   E+ +  DL  W+ 
Sbjct: 63  FVGDLDCEEKDEPLLKETNARFVLFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWE- 121

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L D+ER  I+  L FFA+S+ +V  N+V      +   E + +   Q   E +H+ T
Sbjct: 122 -NKLNDNERYFIEHVLAFFAASDGIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAET 180

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D      LF+    +P I  KA+WAL++              D    F +
Sbjct: 181 YSLLIDTYIKDTARRNFLFDAMDTIPCIRKKADWALRWI------------SDKRSCFGE 228

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   +   ++ 
Sbjct: 229 RLIAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFTHLRR 287

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  +        ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    +
Sbjct: 288 -------RPHPDTIARIIKEAVSIEQEFLTDALPVSLIGMNAKLMCQYIEFVADRLLVAL 340

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           G E ++  + NPF +M E+I L+ + NFFE+RV+ Y +   
Sbjct: 341 GNEKIWN-STNPFDFM-EMISLQGKANFFESRVSAYSKSGV 379


>gi|327261311|ref|XP_003215474.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 2 [Anolis carolinensis]
          Length = 390

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 93/336 (27%), Positives = 154/336 (45%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N  D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L  D
Sbjct: 67  NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 123

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +
Sbjct: 124 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 183

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P +  KA+WA+++                      +  V + 
Sbjct: 184 YIKDPKEREYLFNAIETLPCVKRKADWAMRWIG-------------DKHATYGERVVAFA 230

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F   +   +         
Sbjct: 231 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------H 283

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   ++K
Sbjct: 284 KPSEERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK 343

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 344 -AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|224046583|ref|XP_002198998.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 362

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 100/346 (28%), Positives = 167/346 (48%), Gaps = 28/346 (8%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +S   A E   ++D++ +L        + P++Y   W+ Y  A  + W   EV +  DL 
Sbjct: 28  MSSSSAAENGSDLDEEPLLRKNHRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP 87

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E V
Sbjct: 88  HW---NKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENV 144

Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS  +  +I +   D  +   LFN    +P +  KA+WAL++ +            D + 
Sbjct: 145 HSEMYSLLIDTYIKDPKKRDFLFNAIETMPCVKKKADWALKWIE------------DRES 192

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            F + +  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + +
Sbjct: 193 TFGERVVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFH 251

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
            +         +  +++   ++  A  +E  +  E +P G +G+N    +QY++F+A+R 
Sbjct: 252 YLVN-------RPSEERVCEIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRL 304

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             ++G   +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 305 LMELGFSKVFNV-ENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 348


>gi|298707394|emb|CBJ30029.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 380

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 152/348 (43%), Gaps = 28/348 (8%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +S ++  E    +  + +L        L P++    W+ Y  A    W   E+ +  D  
Sbjct: 46  VSEMRRKEMEGTLKPEPLLVENPGRFVLFPIQDNEVWQMYKKAEACFWTAEELDLAHDHK 105

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+   GLTDDER  +K  L FFA+S+ +V  N+       +   E R +   Q   E +
Sbjct: 106 DWE---GLTDDERHFVKHVLAFFAASDGIVNENLASNFSSEIQLSEARCFYGFQIAIENI 162

Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS  +  +I +   D  E   LFN    VP +  KA WAL++              D   
Sbjct: 163 HSEVYSLLIDTYVKDAAEKTHLFNAMETVPCVRRKARWALRW-------------CDPKL 209

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
               +  V +   EG++F   F  +  L +   M G+    + I RDE LH +F   +  
Sbjct: 210 ASYAERLVAFAAVEGIFFSGSFCAVFWLKKRGLMPGLCFSNELISRDEGLHTDFACLLFR 269

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           ++  + P        ++   ++ +A  +E  +    +P   +G+N+    QY++F A+R 
Sbjct: 270 KLVNKLPV-------ERVAEIICDAVDIEKEFITSALPVELIGMNSALMRQYIEFCADRL 322

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
             ++G E  +  + NPF WM E+I L+ + NFFE RV EY +      
Sbjct: 323 LMELGCEKKYN-STNPFDWM-EMISLQGKTNFFEKRVGEYSKSGVGVD 368


>gi|198420293|ref|XP_002130242.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit
           M2 (Ribonucleotide reductase small subunit)
           (Ribonucleotide reductase small chain) [Ciona
           intestinalis]
          Length = 393

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +++ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+    L  +ER
Sbjct: 72  NEEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDMVHWE---ALKPNER 128

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +  
Sbjct: 129 KFISHVLAFFAASDGIVNENLVERFAQEVQITEARFFYGFQIAIENIHSEMYSLLINTYI 188

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P +  KA WAL++                 +    +  + +   
Sbjct: 189 RDTHEREFLFNAIETLPCVRKKAEWALKWI-------------SDSESTYAERIIAFASV 235

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   +   +         K 
Sbjct: 236 EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HKP 288

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            + +   ++ +A  +E  +  + +P   +G+N    +QY++F+A+R   ++G   +FK  
Sbjct: 289 SEARVVEIVKDAVTIEQEFLTDALPVALIGMNNKLMKQYIEFVADRLLVELGCSKVFKV- 347

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           ENPF +M E+I L+ + NFFE RV EYQ+   +
Sbjct: 348 ENPFDFM-ELISLEGKTNFFEKRVGEYQKAGVM 379


>gi|89268988|emb|CAJ81953.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana)
           tropicalis]
 gi|89269815|emb|CAJ81580.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana)
           tropicalis]
          Length = 386

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/339 (27%), Positives = 156/339 (46%), Gaps = 28/339 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K   + D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L
Sbjct: 60  KDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES---L 116

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +
Sbjct: 117 KAEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 176

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E   LFN    +P +  KA+WAL++                 Q    +  V
Sbjct: 177 IDTYIKDPKEREYLFNAIETLPCVKKKADWALRWI-------------SDKQATYGERVV 223

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +      
Sbjct: 224 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVN---- 279

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
              K  +++   ++ +A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   
Sbjct: 280 ---KPSEERVVQLITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLLLELGFNK 336

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +FK T NPF +M E I L+ + NFFE +V EYQ+   + 
Sbjct: 337 VFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQKMGVMS 373


>gi|56118690|ref|NP_001007890.1| ribonucleotide reductase M2, gene 2 [Xenopus (Silurana) tropicalis]
 gi|51258920|gb|AAH80161.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana)
           tropicalis]
          Length = 386

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/339 (27%), Positives = 156/339 (46%), Gaps = 28/339 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K   + D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L
Sbjct: 60  KDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES---L 116

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +
Sbjct: 117 KAEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEMYSLL 176

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E   LFN    +P +  KA+WAL++                 Q    +  V
Sbjct: 177 IDTYIKDPKEREYLFNAIETLPCVKKKADWALRWIG-------------DKQATYGERVV 223

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +      
Sbjct: 224 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVN---- 279

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
              K  +++   ++ +A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   
Sbjct: 280 ---KPSEERVVQLITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLLLELGFNK 336

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +FK T NPF +M E I L+ + NFFE +V EYQ+   + 
Sbjct: 337 VFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQKMGVMS 373


>gi|148234092|ref|NP_001079369.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus laevis]
 gi|27371032|gb|AAH41209.1| MGC52676 protein [Xenopus laevis]
          Length = 386

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/346 (27%), Positives = 159/346 (45%), Gaps = 28/346 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +P     K   ++D+ +L        + P++Y   W+ Y  A  + W   EV +  DL  
Sbjct: 53  TPKSKAPKNPRLEDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQH 112

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+S   L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +H
Sbjct: 113 WES---LKKEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E   LFN    +P +  KA+WAL +                 Q 
Sbjct: 170 SEMYSLLIDTYVKDPKEREYLFNAIETLPCVKKKADWALHWIG-------------DKQA 216

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 217 TFGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKH 276

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +         K  +++   ++ +A  +E  +  E +P   +G+N    +QY++F+A+R  
Sbjct: 277 LIR-------KPSEERVVELITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLL 329

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++G + +FK T NPF +M E I L+ + NFFE +V EYQ+   + 
Sbjct: 330 LELGFKKVFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQKMGVMS 373


>gi|195333568|ref|XP_002033462.1| GM20395 [Drosophila sechellia]
 gi|195582581|ref|XP_002081105.1| GD25870 [Drosophila simulans]
 gi|194125432|gb|EDW47475.1| GM20395 [Drosophila sechellia]
 gi|194193114|gb|EDX06690.1| GD25870 [Drosophila simulans]
          Length = 393

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++      +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W 
Sbjct: 62  MEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L DDER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  +   LFN    +P++  KA+WAL +  +                  
Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWISS-------------KSANF 225

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +   + 
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLV 285

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   +  +++   ++ +A  +E  +  + +P   +G+N     QY++F+A+R   +
Sbjct: 286 Q-------RPKRERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +G+  ++  T+NPF +M E+I L  + NFFE +V EYQ+   + 
Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVAEYQRMGVVS 380


>gi|72008642|ref|XP_780110.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I
           isoform 1 [Strongylocentrotus purpuratus]
 gi|115928579|ref|XP_001179668.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I
           [Strongylocentrotus purpuratus]
          Length = 412

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 101/354 (28%), Positives = 167/354 (47%), Gaps = 30/354 (8%)

Query: 2   ANNTGLSPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           A +  + P  +G+K V  N +D+ +L   +    + P++Y   W+ Y  A  + W   EV
Sbjct: 66  AKSKLVKPENSGKKVVSFNKEDEPLLRENARRFVIFPIQYHDIWQFYKKAEASFWTAEEV 125

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  DL  W     L D+ER  I   L FFA+S+ +V  N+V    + +   E R +   
Sbjct: 126 DLSKDLDHW---ANLKDEERHFISHVLAFFAASDGIVNENLVERFSQEVQVAEARCFYGF 182

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
           Q   E +HS  +  +I +   D  +   LFN    +P +T KA WAL +  +  S  F T
Sbjct: 183 QIAIENIHSEMYSLLIDTYIKDSVQRDFLFNAVETLPCVTKKAQWALNWIGS-DSADFGT 241

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         V +   EG++F   FA I  L +   M G+    + I RDE LH +
Sbjct: 242 ------------RIVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCD 289

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
           F   +   +         K  ++  + ++ EA  +E  +  + +P   +G+NA   ++Y+
Sbjct: 290 FACLMFKHLNN-------KPDEEHVQGIIKEAVAIEQEFLTDALPCSLIGMNAVLMKRYI 342

Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +F+A+R   ++G   ++K  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 343 EFVADRLLVELGCGKIWKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 394


>gi|195485577|ref|XP_002091148.1| GE13485 [Drosophila yakuba]
 gi|194177249|gb|EDW90860.1| GE13485 [Drosophila yakuba]
          Length = 393

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++      +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W 
Sbjct: 62  MEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L DDER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  +   LFN    +P++  KA+WAL +  +                  
Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWISS-------------KSANF 225

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +   + 
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLV 285

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   +  +++   ++ +A  +E  +  + +P   +G+N     QY++F+A+R   +
Sbjct: 286 Q-------RPKRERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +G+  ++  T+NPF +M E+I L  + NFFE +V EYQ+   + 
Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVGEYQRMGVVS 380


>gi|168049349|ref|XP_001777126.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671569|gb|EDQ58119.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 325

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/335 (27%), Positives = 152/335 (45%), Gaps = 29/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           ++ + +L        + P+KY   WE Y  A  + W   EV +  DL  W+    LTD+E
Sbjct: 1   MEQEPILAENPGRFCMFPIKYPQVWEMYKKAEASFWTAEEVDLSADLKHWE---ALTDNE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS  +  ++ + 
Sbjct: 58  RHFISHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAY 117

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D+ E   LFN    +P +T KA WAL++  +  S                +  + +  
Sbjct: 118 IKDQSEKHRLFNAIETIPCVTRKAEWALKWIDSSGS--------------FAERILAFAC 163

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   F  I  L +   M G+    + I RDE LH +F   +   +  +       
Sbjct: 164 VEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLNNKLS----- 218

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             + +   ++ EA  +E  +  E +    VG+N     +Y+ F+A+R    +G    +  
Sbjct: 219 --EDRVHEIVCEAVDIEREFVCEALSCDLVGMNKIMMSEYIDFVADRLLVSLGYNKRYN- 275

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 276 ARNPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 309


>gi|58260896|ref|XP_567858.1| ribonucleoside-diphosphate reductase [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134116993|ref|XP_772723.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255341|gb|EAL18076.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229939|gb|AAW46341.1| ribonucleoside-diphosphate reductase, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 401

 Score =  267 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/341 (27%), Positives = 157/341 (46%), Gaps = 27/341 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             G+      D+ +L   +    L P+KY   W+ Y  A  + W   E+ +  DL  W+ 
Sbjct: 63  FVGDLDCEEKDEPLLKETNARFVLFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWE- 121

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L D+ER  I+  L FFA+S+ +V  N+V      +   E + +   Q   E +H+ T
Sbjct: 122 -NKLNDNERYFIEHVLAFFAASDGIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAET 180

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D      LF+    +P I  KA+WAL++              D    F +
Sbjct: 181 YSLLIDTYIKDTARRNFLFDAIDTIPCIRKKADWALRWI------------SDKRSCFGE 228

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   +   ++ 
Sbjct: 229 RLIAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFTHLRR 287

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  +        ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    +
Sbjct: 288 -------RPHPDTIARIIKEAVTIEQEFLTDALPVSLIGMNAKLMCQYIEFVADRLLVAM 340

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           G E ++  + NPF +M E+I L+ + NFFE+RV+ Y +   
Sbjct: 341 GNEKIWN-STNPFDFM-EMISLQGKANFFESRVSAYSKSGV 379


>gi|225432510|ref|XP_002279943.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 340

 Score =  267 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 93/341 (27%), Positives = 155/341 (45%), Gaps = 29/341 (8%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
                  +++ +L   S    + P++Y   WE Y  A  + W   EV +  D+  W+S  
Sbjct: 10  KRPDEEQEEEPILMKNSQRFCMFPIRYRQLWEMYKKAEASFWTAEEVDLSHDVQQWES-- 67

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L++ E+  I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS  + 
Sbjct: 68  -LSNSEKHFISHVLAFFAASDGIVLENLAARFLHDIQIPEARAFYGFQIAMENIHSEMYS 126

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            ++ +   D  E   LFN    +  +  KA WAL + Q+                   + 
Sbjct: 127 LLLETYIKDSKEKHRLFNAIESISCVAGKAKWALDWIQS--------------STLFAER 172

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            + +   EG++F   F  I  L +   M G+    + I RDE LH +F   + + ++ + 
Sbjct: 173 LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQL 232

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           P        QK   ++HEA  +E  +  E +P   +G+NA    QY++F+A+R    +G 
Sbjct: 233 PW-------QKVHHIVHEAVEIETQFVCEALPCALIGMNATLMSQYIKFVADRLLVALGY 285

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           E  +   ENPF WM E I L+ + NFFE RV +YQ+ + + 
Sbjct: 286 ERKYNV-ENPFDWM-EFISLQGKANFFERRVGDYQKASIMS 324


>gi|156387375|ref|XP_001634179.1| predicted protein [Nematostella vectensis]
 gi|156221259|gb|EDO42116.1| predicted protein [Nematostella vectensis]
          Length = 384

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/344 (26%), Positives = 156/344 (45%), Gaps = 28/344 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              + R N +D+ +L        +LP++Y   W+ Y  A  + W   EV +  D   +  
Sbjct: 54  SRAKSRFNTEDEPLLRENPHRFVILPIQYTEIWQMYKKAEASFWTAEEVDLSKDSHDF-- 111

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D ER+ +   L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  
Sbjct: 112 -AKLNDHERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEM 170

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I SL  D+ E   LFN    +P +  KA+WAL +                 +    
Sbjct: 171 YSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWIN-------------PQRASFG 217

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +  
Sbjct: 218 ERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMYKYLVN 277

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  K  ++  R ++ +A ++E  +    +P   +G+N     QY++F+A+R    +
Sbjct: 278 -------KPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVAL 330

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
             + ++   ENPF +M E I L+ + NFFE RV EYQ+   +  
Sbjct: 331 NCQKVYN-AENPFDFM-ENISLEGKTNFFEKRVGEYQKSGVMSD 372


>gi|300676950|gb|ADK26821.1| ribonucleotide reductase M2 [Zonotrichia albicollis]
          Length = 390

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/340 (27%), Positives = 157/340 (46%), Gaps = 28/340 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +R   +++ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   
Sbjct: 63  AERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES--- 119

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  
Sbjct: 120 LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSL 179

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  E   LFN    +P +  KA+WA+ +                 +    +  
Sbjct: 180 LIDTYIKDSQEREFLFNAIETLPCVKKKADWAMCWIG-------------DKKATYGERV 226

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +     
Sbjct: 227 VAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL----- 281

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               K  +++ R ++  A L+E  +  E +P   +G+N    +QY++F+A+R   ++G  
Sbjct: 282 --IHKPSEERVREIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFN 339

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++K  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 340 KIYK-AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|189501948|ref|YP_001957665.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497389|gb|ACE05936.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 355

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 152/332 (45%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   L P+++   WE Y  A  + W   E+ +  DL  W     L D ER  
Sbjct: 34  EPILQENKNRFVLFPIEHHDIWEFYKKAEASFWTAEEIDLGQDLKDW---ANLNDGERHF 90

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 91  ISHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGFQIAVENIHSETYSLLIDTYIKD 150

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +  +  KA+WAL++ +  S                 +  V +   EG
Sbjct: 151 PQERDKLFNAIDTLDCVKKKADWALRWIEQAS---------------FAERLVAFAAVEG 195

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G++   + I RDE LH +F   +             K  +
Sbjct: 196 IFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYANHLQ------NKLPE 249

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R ++ +A  +E  +  + +P   +G+NA    QY++F+A+R   ++G   ++  T N
Sbjct: 250 ERVREIITDAVAIEKEFVTDALPVKLIGMNADLMSQYIEFVADRLLLELGCSKVYNAT-N 308

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E+I L+ + NFFE RV EYQ+   +K
Sbjct: 309 PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMK 339


>gi|242076364|ref|XP_002448118.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor]
 gi|241939301|gb|EES12446.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor]
          Length = 339

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 154/333 (46%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L   SD   + P+++   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 14  EEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 71

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 72  FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF     VP++  KA+WA+++              D  + F + L   +   E
Sbjct: 132 DGAEKDRLFRAIETVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVE 177

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++ +         
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLD------- 230

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++    
Sbjct: 231 ESRVREIVADAVDIEREFVCDALPVALVGMNGALMSQYIEFVADRLLMALGHKKMYNVA- 289

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 321


>gi|156545974|ref|XP_001606963.1| PREDICTED: similar to ENSANGP00000013211 [Nasonia vitripennis]
          Length = 388

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 153/341 (44%), Gaps = 28/341 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
               +   + +L        L P+++   W  Y  A  + W   EV +  D+A W   N 
Sbjct: 59  TPAFDPQLEPLLKENPGRFVLFPIQWPDIWHMYKKAEASFWTVEEVDLSKDMADW---NR 115

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L D+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  
Sbjct: 116 LNDNERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQVAIENIHSEMYSL 175

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KANWAL +                D     +  
Sbjct: 176 LIDTYISDASQRQFLFNAIETLPCVAKKANWALNWI-------------SHDSATFAERV 222

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           + +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   I     
Sbjct: 223 IAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHIVQ--- 279

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               K  +++  +++ +A  +E  +  + +P   +G+N     QY++F+A+R   ++G  
Sbjct: 280 ----KPSEERVISIIKDAVTIEQEFLTDALPVEMIGMNCRLMCQYIEFVADRLLGELGCP 335

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
            ++  +ENPF +M   I L+ + NFFE +V EYQ+   ++ 
Sbjct: 336 KVYN-SENPFDFMEH-ISLEGKTNFFEKKVGEYQKWGVMQD 374


>gi|212274629|ref|NP_001130908.1| hypothetical protein LOC100192012 [Zea mays]
 gi|195636980|gb|ACG37958.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
          Length = 339

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 152/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            + +L   SD   + P++Y   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 14  QEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 71

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 72  FISHVLAFFAASDGIVLENLASRFMSDVQAAEARAFYGFQIAIENIHSEMYSLLLETYIR 131

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF     VP++  KA+WA+++              D  + F + L   +   E
Sbjct: 132 DGTEKDRLFRAIETVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVE 177

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++ +         
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLD------- 230

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++    
Sbjct: 231 ESRVREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGHRKMYNVA- 289

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 321


>gi|326917964|ref|XP_003205263.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           [Meleagris gallopavo]
          Length = 353

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 94/339 (27%), Positives = 161/339 (47%), Gaps = 28/339 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  + + ++ +L        + P+++   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 26  ENGLKLHEEPLLRKNPRRFVIFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 82

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 83  LKPDEKYFISHILAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENVHSEMYSL 142

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++ +                    +  
Sbjct: 143 LIDTYIKDPEKRDFLFNAIETMPCVKKKADWALKWIE-------------DRHSTFGERV 189

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + + +     
Sbjct: 190 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFHYLVN--- 246

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               +  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 247 ----RPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLMELGFS 302

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +F + ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 303 KVF-HAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 339


>gi|266918|sp|P07201|RIR2_SPISO RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit;
           AltName: Full=p41
 gi|10342|emb|CAA38919.1| M2 (small) subunit of ribonucleotide reductase [Spisula
           solidissima]
          Length = 384

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 157/349 (44%), Gaps = 28/349 (8%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           T L        + +   + +L        +LP++Y   W+ Y  A  + W   EV +  D
Sbjct: 45  TPLKQEIKPVVKKSQQVEPLLADNPRRFVVLPIQYHDIWKMYKKAEASFWTAEEVDLSKD 104

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +A W+S   L  +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E
Sbjct: 105 MAHWES---LKKEEKHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAME 161

Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
            +HS  +  +I +   D  E   LFN    +P +  KA+WA+++                
Sbjct: 162 NIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADWAMRWIN-------------D 208

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
           D     +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +
Sbjct: 209 DSSSYAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLTFSNELISRDEGLHCDFACLM 268

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
            + +         K  Q++   ++ EA  +E  +  E +P   +G+N     QY++F+A+
Sbjct: 269 FSHLVN-------KPSQERIHQIIDEAVKIEQVFLTEALPCRLIGMNCDLMRQYIEFVAD 321

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           R   ++  + L+   ENPF +M   I L+ + NFFE RV EYQ+   + 
Sbjct: 322 RLLLELKCDKLYN-KENPFDFMEH-ISLEGKTNFFEKRVGEYQKMGVMS 368


>gi|242095388|ref|XP_002438184.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor]
 gi|241916407|gb|EER89551.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor]
          Length = 339

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 155/333 (46%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L   SD   + P+++   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 14  EEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSSDARHWDE--ALSPDERH 71

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 72  FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D+ E   LF     VP++  KA+WA+++              D  + F + L   +   E
Sbjct: 132 DDAEKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVE 177

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +   ++ +         
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYELLRSKLD------- 230

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++  T 
Sbjct: 231 EARVREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGCKKMYNAT- 289

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV +YQ+ + + 
Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMN 321


>gi|194690416|gb|ACF79292.1| unknown [Zea mays]
 gi|194704028|gb|ACF86098.1| unknown [Zea mays]
 gi|195619132|gb|ACG31396.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
 gi|223943167|gb|ACN25667.1| unknown [Zea mays]
          Length = 339

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 152/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            + +L   SD   + P++Y   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 14  QEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 71

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 72  FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF     VP++  KA+WA+++              D  + F + L   +   E
Sbjct: 132 DGTEKDRLFRAIETVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVE 177

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++ +         
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLD------- 230

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G   ++    
Sbjct: 231 ESRVREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGHRKMYNVA- 289

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 321


>gi|312889900|ref|ZP_07749444.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM
           18603]
 gi|311297432|gb|EFQ74557.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM
           18603]
          Length = 343

 Score =  266 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/344 (26%), Positives = 159/344 (46%), Gaps = 30/344 (8%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
               R++ +++ +L    D   +LP+ Y   WE Y     + W   E+ + DD+  W   
Sbjct: 15  NTVTRMSQENELLLRENKDRFVILPINYPQIWEMYKKHEASFWTAEEIDLSDDMKDW--- 71

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           N L D ER  I   L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS T+
Sbjct: 72  NNLNDGERHFISHILAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETY 131

Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +   D  E   LF+    VP +  K  WAL++ +  +                 +
Sbjct: 132 ALLIDTYIKDTTEKNRLFHAIETVPCVKKKGEWALKWIENGT---------------FAE 176

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V +   EG++F   F  I  L +   M G+    + I RDE +H  F   + + +  +
Sbjct: 177 RLVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCEFACLLYSMLSNK 236

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
                    ++   T++ +A  +E  +  + +P   +G+NA    QY++F+A+R   ++G
Sbjct: 237 LS-------KEAVTTIIADAVEIEKEFVTDALPVNLIGMNAKLMSQYIEFVADRWLQELG 289

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            + L+ +  NPF +M E+I L+ + NFFE RV +YQ+   L  D
Sbjct: 290 YDKLY-HATNPFDFM-EMISLQGKTNFFEKRVGDYQKSGVLNND 331


>gi|255530602|ref|YP_003090974.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM
           2366]
 gi|255343586|gb|ACU02912.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM
           2366]
          Length = 324

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 30/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +++ +L    D   LLP+KY   WE Y  +  + W   E+ + DD   W   + L D ER
Sbjct: 3   EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FF++S+ +V  N+ +     +  PE R +   Q   E +HS T+  +I +  
Sbjct: 60  HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LF+    VP +  KA WAL++    S                 +  V +   
Sbjct: 120 KDPDEKDRLFHAIETVPCVKKKAEWALRWIDNGS---------------FAERLVAFAAV 164

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE  H  F   +   +K +        
Sbjct: 165 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGSHCEFACLLYGMLKNKLS------ 218

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            Q++   ++ +A  +E  +  + +P   +G+NA    QY++F+A+R   ++G   ++  T
Sbjct: 219 -QEQVHGIIRDAVEIEKEFVTDALPVALIGMNAKLMSQYIEFVADRWLQELGYSKIYNAT 277

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPF +M E+I L+ + NFFE RV +YQ+   L 
Sbjct: 278 -NPFDFM-EMISLQGKTNFFEKRVGDYQKSGVLT 309


>gi|195119943|ref|XP_002004488.1| GI19586 [Drosophila mojavensis]
 gi|193909556|gb|EDW08423.1| GI19586 [Drosophila mojavensis]
          Length = 393

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 88/340 (25%), Positives = 154/340 (45%), Gaps = 28/340 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
               +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W     
Sbjct: 66  AAPFDPSLEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---AR 122

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LTD+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  +  
Sbjct: 123 LTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSV 182

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  E   LFN    +P++  KA+WAL +  +                   +  
Sbjct: 183 LIDTYIRDPQERDYLFNAVETMPAVKRKADWALSWISS-------------KAANFGERI 229

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +   +     
Sbjct: 230 IAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVMMFRHLVQ--- 286

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               +  +++   ++ +A  +E  +  + +P   +G+N     QY++F+A+R   ++G+ 
Sbjct: 287 ----RPSRERIIEIISDAVTIEQEFLTDALPVNLIGMNCALMSQYIEFVADRLLVELGVG 342

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++  T+NPF +M E+I L  + NFFE +V EYQ+     
Sbjct: 343 KIYN-TKNPFTFM-EMISLDGKTNFFEKKVGEYQRMGVTS 380


>gi|118087248|ref|XP_418364.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 353

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 98/342 (28%), Positives = 165/342 (48%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            A E  +   ++ +L        + P+++   W+ Y  A  + W   EV +  DL  W  
Sbjct: 23  SAAENGLKPHEEPLLRKNPRRFVIFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 80

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 81  -NKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENVHSEM 139

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +   LFN    +P +  KA+WAL++ +            D +  F +
Sbjct: 140 YSLLIDTYIKDPEKRDFLFNAIETMPCVKKKADWALKWIE------------DRESTFGE 187

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            +  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + +  
Sbjct: 188 RVVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFHYLVN 246

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  +  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 247 -------RPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLMEL 299

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F + ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 300 GFSKVF-HAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 339


>gi|302783485|ref|XP_002973515.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii]
 gi|302787555|ref|XP_002975547.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii]
 gi|300156548|gb|EFJ23176.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii]
 gi|300158553|gb|EFJ25175.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii]
          Length = 347

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 160/346 (46%), Gaps = 30/346 (8%)

Query: 8   SPIQAGEKRVN-VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           SPI     R+    ++ +L        + P++Y   WE Y  A  + W   EV +  D  
Sbjct: 9   SPIVDDGSRIKAPKEEPILADNPQRFCMFPIRYPRVWEMYKKAEASFWTAEEVDLSQDAK 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+S   LTD+E+  +   L FFA+S+ +V  N+ +   + +  PE R +   Q   E +
Sbjct: 69  HWES---LTDNEKHFVSHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGFQIAIENI 125

Query: 127 HSHTFQYIITSLGLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS  +  ++ +   D     +LFN    +P +  KA+WAL++  +  S            
Sbjct: 126 HSEMYSLLLETYIKDNEVKAKLFNAIETIPCVAKKADWALRWIDSSQS------------ 173

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
               +  V +   EG++F   F  I  L +   M G+    + I RDE LH +F   + +
Sbjct: 174 --FAERIVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 231

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
            + ++         +++ + ++ +A  +E  +  E +    VG+NA    QY+ F+A+R 
Sbjct: 232 LLNVKLD-------EKRVKEIVSDAVEIERQFVCEALSCDLVGMNARLMSQYIDFVADRL 284

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
              +G   LF    NPF WM  +I L+ + NFFE RV EYQ+ + +
Sbjct: 285 MVVLGYNKLFN-AINPFDWMD-LISLQGKTNFFEKRVGEYQKASVM 328


>gi|322491821|emb|CBZ27094.1| ribonucleoside-diphosphate reductase small chain,putative
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 392

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 92/352 (26%), Positives = 159/352 (45%), Gaps = 28/352 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A    + P+    +  N +++ +         L P++Y   W KY    +  W   E+ +
Sbjct: 52  APGAEVLPVDKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDL 111

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
            +D+  W     L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q 
Sbjct: 112 GNDMKDW---AALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQL 168

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  ++ +   D  E   L +  + +P I  KA WA+++  +          
Sbjct: 169 MMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWIGS---------- 218

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                 F + L  F  V EG++F   F  +  L +   M G+    + I RDE LH +F 
Sbjct: 219 ---SASFQERLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFA 274

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             +       N H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++F
Sbjct: 275 CLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEF 328

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +G E  +  T+ PF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 329 VADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 378


>gi|297831106|ref|XP_002883435.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata]
 gi|297329275|gb|EFH59694.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata]
          Length = 341

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 99/348 (28%), Positives = 160/348 (45%), Gaps = 29/348 (8%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            L   Q  +   +   + +L A++    + P++Y   WE Y  A  + W   EV +  D+
Sbjct: 3   SLKESQRRDMDEDESKEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDV 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             W+    LTD E+  I   L FFA+S+ +V  N+       +  PE R +   Q   E 
Sbjct: 63  QQWE---ALTDSEKHFISHVLAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMEN 119

Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           +HS  +  ++ +   D  E   LFN    +P I+ KA W L + Q+              
Sbjct: 120 IHSEMYSLLLETFLKDSKEKDRLFNAIETIPCISKKAKWCLDWIQS-------------P 166

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
             F   L   +   EG++F   F  I  L +   M G+    + I RDE LH +F   + 
Sbjct: 167 MSFAVRLVA-FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 225

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           + ++ + P        +K   ++HEA  +E  +  + +P   +G+N+    QY+QF+A+R
Sbjct: 226 SLLQKQLPL-------EKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADR 278

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
               +G E  +K  ENPF WM E I L+ + NFFE RV EYQ+ + + 
Sbjct: 279 LLVTLGCERRYK-AENPFDWM-EFISLQGKTNFFEKRVGEYQKASVMS 324


>gi|224048725|ref|XP_002196356.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Taeniopygia
           guttata]
          Length = 390

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 91/339 (26%), Positives = 157/339 (46%), Gaps = 28/339 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +R   +++ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L
Sbjct: 64  ERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---L 120

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +
Sbjct: 121 KPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLL 180

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E   LFN    +P +  KA+WA+ +                 +    +  V
Sbjct: 181 IDTYIKDSKEREFLFNAIETLPCVKKKADWAMCWIG-------------DKKATYGERVV 227

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +      
Sbjct: 228 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL------ 281

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
              K  +++ + ++  A L+E  +  E +P   +G+N    +QY++F+A+R   ++G   
Sbjct: 282 -IHKPSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNK 340

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ++K  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 341 IYK-AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377


>gi|302833193|ref|XP_002948160.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f.
           nagariensis]
 gi|300266380|gb|EFJ50567.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f.
           nagariensis]
          Length = 354

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 95/335 (28%), Positives = 152/335 (45%), Gaps = 28/335 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L    +   L P++Y   WE Y  A  + W   EV    DL  +     L ++ER 
Sbjct: 24  DEAVLRENPNRFTLFPIRYPDLWEFYKRAVASFWTVEEVDFTGDLYDFDH--KLKEEERR 81

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E VHS  +  ++     
Sbjct: 82  FIKYVLAFFAASDGIVMENLSARFMSEVQVPEARAFYGFQIAMENVHSEMYSVLLDHYVR 141

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LFN  + + ++  KA+WAL++  + +S                +  V +   E
Sbjct: 142 DPAERRQLFNAIQTIATVGKKADWALRWISSSNS--------------FAERLVAFACVE 187

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ F   F  I  L +   M G++     I RDE LH +F   +   +K           
Sbjct: 188 GIHFSGSFCAIFWLKKRLLMPGLSFSNCLISRDEGLHCDFACCLYGHLKNRLS------- 240

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++   ++ EA  LE  +  E +    +G+NA    QY++F+A+R    +G +  +  T 
Sbjct: 241 RERVVKIVDEAVRLEDEFCTEALSCELLGMNADLMRQYIRFVADRLLVSLGYDKYYN-TV 299

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           NPF WM E+I L+ + NFFE RV EYQ+   +  D
Sbjct: 300 NPFDWM-EMISLQGKANFFERRVGEYQRACVMAGD 333


>gi|158286793|ref|XP_308927.4| AGAP006818-PA [Anopheles gambiae str. PEST]
 gi|157020637|gb|EAA04227.4| AGAP006818-PA [Anopheles gambiae str. PEST]
          Length = 400

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 155/340 (45%), Gaps = 28/340 (8%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
                +   + +L        + P++Y   W+ Y  A  + W   EV +  D+  W++  
Sbjct: 72  ESAPFDPSIEPLLRDNPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDWET-- 129

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L   ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  + 
Sbjct: 130 -LKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYS 188

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +I +   D  E   LFN    +P +  KA+WAL +  +              +    + 
Sbjct: 189 LLIDTYIRDSKEREFLFNAIETLPCVKRKADWALNWISS-------------KKANFGER 235

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +    
Sbjct: 236 VVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKYLVQ-- 293

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                K  +++   ++ +A L+E  +  + +P   +G+N     QY++F+A+R   ++G 
Sbjct: 294 -----KPSKERVTEIIRDAVLIEQEFLTKALPVDMLGMNCDLMSQYIEFVADRLLLELGC 348

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           E ++ +T+NPF +M E I L+ + NFFE +V EYQ+   +
Sbjct: 349 EKIY-HTKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 386


>gi|145349720|ref|XP_001419276.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579507|gb|ABO97569.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 329

 Score =  265 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 153/332 (46%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y  A  + W   EV + DD+  W++   LT DE+  
Sbjct: 8   EPLLDENDQRFTMFPIQYPQVWEMYKKAEASFWTAEEVDLSDDMKHWET---LTKDEKHF 64

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           +   L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS  +  +I     D
Sbjct: 65  VSHVLAFFAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENIHSEMYSLLIDQYIKD 124

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LF     +P +  KA+WAL++  +  S                +  + +   EG
Sbjct: 125 PVEKDHLFRAIDTIPCVKKKADWALKWIDSSDS--------------FAERLLAFACIEG 170

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   + + +         K  +
Sbjct: 171 IFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLFSMLNN-------KPSE 223

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R ++ EA  +E  +  +++P   VG+NA     Y++++A+     +GL   +  T N
Sbjct: 224 ETIRKIVTEAVEIEKEFVCDSLPCALVGMNAGMMSDYIEYVADHLFCSLGLAKEYN-TTN 282

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF WM E+I L+ + NFFE RV EYQ+   + 
Sbjct: 283 PFDWM-ELISLQGKTNFFEKRVGEYQKAGVMN 313


>gi|149637725|ref|XP_001508783.1| PREDICTED: similar to Ribonucleotide reductase M2 B (TP53
           inducible) [Ornithorhynchus anatinus]
          Length = 401

 Score =  265 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 162/343 (47%), Gaps = 28/343 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +  E  +   ++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 71  EPTENGLQPCEEPLLRKSSRRFVIFPIQYPEIWKMYKQAQASFWTAEEVDLSKDLPHW-- 128

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 129 -NKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 187

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +   LFN    +P +  KA+W+L++                 Q    
Sbjct: 188 YSLLIDTYIKDPKKREFLFNAIETMPFVKKKADWSLRWIA-------------DRQSTFG 234

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +  
Sbjct: 235 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVK 294

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  K  + K + ++ +A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 295 -------KPSEDKVKEIIIDAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLVEL 347

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           G   +F +++NPF +M E I L+ + NFFE RV+EYQ+ A + 
Sbjct: 348 GFSKVF-HSDNPFDFM-ENISLEGKTNFFEKRVSEYQRFAVMS 388


>gi|294890631|ref|XP_002773236.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239878288|gb|EER05052.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 350

 Score =  265 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 152/332 (45%), Gaps = 28/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            + +L        + P+KY   WE Y     + W   E+ +  DL  W+    L+D++R 
Sbjct: 14  KEDLLKENPHRYVMFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWE---NLSDNDRH 70

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +   
Sbjct: 71  FISHVLAFFAASDGIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIK 130

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   +F     VPS+  KA WAL +                D  F + L   +   E
Sbjct: 131 DPAEKDKIFRAIETVPSVRKKAEWALSWIN-------------DDNCFSERLIA-FACVE 176

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ F   F  I  L +   M G+    + I RDE LH +F   + N +       +T+  
Sbjct: 177 GILFSGSFCAIYWLKKRGLMPGLTFSNELISRDEGLHADFACLLYNMM------HYTRLP 230

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            ++   ++  A  +E  +  E++P   +G+N+    +Y++F+A+R    +G   L+  T 
Sbjct: 231 DERVHEIVRGAVDVERVFISESLPVSLIGMNSQLMCRYIEFVADRLLVALGHPKLYNAT- 289

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF WM ++I L+ + NFFE RV EYQ+G  +
Sbjct: 290 NPFDWM-KMISLQGKTNFFEKRVGEYQKGGVM 320


>gi|156386903|ref|XP_001634150.1| predicted protein [Nematostella vectensis]
 gi|156221230|gb|EDO42087.1| predicted protein [Nematostella vectensis]
          Length = 384

 Score =  265 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 157/343 (45%), Gaps = 28/343 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
              + R N +D+ +L        +LP++Y   W+ Y  A  + W   EV +  D   +  
Sbjct: 54  SRAKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDF-- 111

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L DDER+ +   L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  
Sbjct: 112 -AKLNDDERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEM 170

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I SL  D+ E   LFN    +P +  KA+WAL +                 +    
Sbjct: 171 YSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWIN-------------PQRASFG 217

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +  
Sbjct: 218 ERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMYKYLVN 277

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  K  ++  R ++ +A ++E  +    +P   +G+N     QY++F+A+R    +
Sbjct: 278 -------KPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVAL 330

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             + ++   ENPF +M E I L+ + NF+E RV EYQ+   + 
Sbjct: 331 NCQKVYNV-ENPFDFM-ENISLEGKTNFYEKRVGEYQKSGVMS 371


>gi|301774462|ref|XP_002922647.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           [Ailuropoda melanoleuca]
          Length = 387

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 98/339 (28%), Positives = 159/339 (46%), Gaps = 28/339 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E     D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 60  ENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 116

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 117 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 176

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++ +               +    +  
Sbjct: 177 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIE-------------DRKSTFGERV 223

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +     
Sbjct: 224 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 280

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 281 ----KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVELGFS 336

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +F   ENPF +M E I L+ + NFFE RV EYQ+ A +
Sbjct: 337 KVF-QAENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 373


>gi|195436539|ref|XP_002066225.1| GK22247 [Drosophila willistoni]
 gi|194162310|gb|EDW77211.1| GK22247 [Drosophila willistoni]
          Length = 395

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 154/335 (45%), Gaps = 28/335 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W     LTD+
Sbjct: 72  DPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---ARLTDN 128

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  +  +I +
Sbjct: 129 ERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSILIDT 188

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P++  KA+WAL +  +                   +  + + 
Sbjct: 189 YIRDPQERDYLFNAVETMPAVKRKADWALSWISS-------------KAANFGERIIAFA 235

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   FA I  L +   M G+    + I RDE LH +F + +   +         
Sbjct: 236 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNEMISRDEGLHCDFAVLMFQHLVQ------- 288

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +  +++   ++ +A  +E  +    +P   +G+N     QY++F+A+R   ++G+  ++ 
Sbjct: 289 RPSRERIIEIIRDAVQIEQEFLTVALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN 348

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            T+NPF +M E+I L  + NFFE +V EYQ+   +
Sbjct: 349 -TKNPFSFM-EMISLDGKTNFFEKKVGEYQRMGVV 381


>gi|256421019|ref|YP_003121672.1| ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM
           2588]
 gi|256035927|gb|ACU59471.1| Ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM
           2588]
          Length = 323

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/337 (27%), Positives = 161/337 (47%), Gaps = 30/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +N++++ +L    D   LLP+ Y   WEKY     + W   E+ +  D+  W   N L D
Sbjct: 1   MNLENELLLKENKDRFVLLPINYPKVWEKYKQHEASFWTAEEIDLSADMKDW---NNLND 57

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            ER  I   L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS T+  +I 
Sbjct: 58  GERHFITHVLAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLID 117

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LF+    VP++T KA WAL++ +  +                 +  V +
Sbjct: 118 TYVKDPVEKDRLFHAIETVPAVTKKAKWALRWIENGN---------------FAERLVAF 162

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  I  L +   M G+    + I RDE LH  F   +   ++   P   
Sbjct: 163 AAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLYGMLENRLP--- 219

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +++  T++ +A  +E  +  + +P   +G+N+    +Y++F+A+R   ++G   +F
Sbjct: 220 ----EEQVHTIIRDAVAIEKEFITDALPVALIGMNSKLMSEYIEFVADRWLSELGYTKIF 275

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             T NPF +M E+I L+ + NFFE RV +YQ+   + 
Sbjct: 276 N-TANPFDFM-EMISLQGKTNFFEKRVGDYQKAGVMS 310


>gi|323450429|gb|EGB06310.1| hypothetical protein AURANDRAFT_65685 [Aureococcus anophagefferens]
          Length = 349

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/331 (25%), Positives = 149/331 (45%), Gaps = 27/331 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        L P+++   W+ Y  A  + W   E+ +  D+  W     L D ER  
Sbjct: 29  EPLLTEDPHRFVLFPIEHDDVWQMYKKAEASFWTAEEIDLCHDIKDWDQ--KLNDKERHF 86

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 87  IKHVLAFFAASDGIVNENLAQNFATEVQWAEARCFYGFQIAIENIHSEVYSLLIDTYIRD 146

Query: 142 ---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
              + E       +P +T KA WAL++              D D+    +  + +   EG
Sbjct: 147 AKEKHECLTAIDTMPCVTKKAQWALRW-------------CDPDRASFAERIIAFAAVEG 193

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  +  L +   M G++   + I RDE +H +F   + ++++ + P        
Sbjct: 194 IFFSGSFCAVFWLKKRGLMPGLSFSNELISRDEGMHCDFACLLYSKLRNKLPV------- 246

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++ +A  +E  +    +P   +G+N+ +  QY++F A+R    +G   L++ T N
Sbjct: 247 ETINALIGDAVTIEKEFVVSALPVELIGMNSRTMCQYIEFCADRLLLALGCPKLYEAT-N 305

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PF WM E+I L+ + NFFE RV EY +    
Sbjct: 306 PFDWM-ELISLQGKTNFFEKRVGEYAKSGVG 335


>gi|20178418|ref|NP_619839.1| CPXV051 protein [Cowpox virus]
 gi|20153036|gb|AAM13497.1|AF482758_48 CPXV051 protein [Cowpox virus]
          Length = 333

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/337 (26%), Positives = 153/337 (45%), Gaps = 29/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           VN+  + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT 
Sbjct: 11  VNLVMEPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+  IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I 
Sbjct: 68  NEKHFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLID 127

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LFN    +P +  KA+WA ++    +S                +  V +
Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSASYG--------------ERLVAF 173

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +   +        
Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL------- 226

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               ++  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++
Sbjct: 227 HPPSEETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIY 286

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             T NPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 287 NVT-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321


>gi|330804590|ref|XP_003290276.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum]
 gi|325079602|gb|EGC33194.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum]
          Length = 335

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/334 (27%), Positives = 153/334 (45%), Gaps = 28/334 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            + ++ +L    D   L P+KY   W  Y  A  + W   E+ +  DL  W S   L D+
Sbjct: 3   QIIEEPILKENKDRFVLFPIKYPDIWSMYKQAEASFWTAEEIDLAPDLNDWSS--KLNDN 60

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +
Sbjct: 61  ERHFISNVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDT 120

Query: 138 LG---LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
                  + +LFN    +P I  KA+WAL++     S                +  V + 
Sbjct: 121 YIKDNEQKSKLFNAIDTIPCIKKKADWALKWINNSDS--------------FAERLVAFA 166

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   F  I  L +   M G+    + I RDE LH NF   +  ++  +      
Sbjct: 167 AVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCNFACLLYTKLINKLES--- 223

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
               +    ++ +A + E  +  +++P   +G+N+ S  QY++F A+R    +G + ++ 
Sbjct: 224 ----KTLEAIIRDAVVCEKEFICDSLPVDLIGMNSRSMSQYIEFCADRLLVSLGYKKIYN 279

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
            + NPF WM E+I L+++ NFFE +V EY +   
Sbjct: 280 AS-NPFDWM-EMISLQRKTNFFEGKVAEYAKTGV 311


>gi|83649535|ref|YP_437970.1| ribonucleotide reductase subunit beta [Hahella chejuensis KCTC
           2396]
 gi|83637578|gb|ABC33545.1| Ribonucleotide reductase, beta subunit [Hahella chejuensis KCTC
           2396]
          Length = 405

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 133/344 (38%), Positives = 189/344 (54%), Gaps = 5/344 (1%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
             +      VN DDKR++N  +D+NQL P KY WAWE +L+A  NHW P ++ M  D+  
Sbjct: 67  EEVPQKLDPVNPDDKRVVNGMTDINQLAPFKYPWAWEFFLNANKNHWTPLDINMSQDVYD 126

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +     LT +E+ + +  L +  +S+ L   NI LA+   +S PE + Y  RQ +EE++H
Sbjct: 127 YHH--KLTLEEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEESLH 184

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           + T+Q+ I ++GLD+ E++N YR  P+I  K     +    L  P      +D  + F+ 
Sbjct: 185 TWTYQHCIETIGLDQSEIYNRYRVTPAIYRKIKMGNERISALLRPDINLRNRDDLETFVM 244

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
               F  +FEG WFY GF+ I +L R   M G  EQ QYIMRDE +H  FGI V+ QI  
Sbjct: 245 AYIFFAGIFEGCWFYNGFSPIFALQRRGLMKGTGEQLQYIMRDEVMHCAFGIRVVKQIIK 304

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E          +  +T+  EA   E  YAH  + +  +G  A    +  +FIANRR  Q+
Sbjct: 305 EEGVTLDP---KAIKTLWEEAEAAETGYAHFLLKEPILGYTAEDHIEQFRFIANRRAKQL 361

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
            L+  F    N  PW+ E   ++KEKNFFETRVTEYQ GA L+W
Sbjct: 362 KLDEPFPGAGNALPWLDEQASMRKEKNFFETRVTEYQTGASLQW 405


>gi|256081213|ref|XP_002576867.1| ribonucleoside-diphosphate reductase small chain [Schistosoma
           mansoni]
 gi|238662153|emb|CAZ33104.1| ribonucleoside-diphosphate reductase small chain, putative
           [Schistosoma mansoni]
          Length = 365

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 96/338 (28%), Positives = 159/338 (47%), Gaps = 28/338 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +  ++ + +L        L P++Y   W  Y  A  + W   EV +  D   W+S   L 
Sbjct: 37  KSEIELEPLLKPNPHRFVLFPIEYHDVWHFYKKAVASFWTVEEVDLSKDFIHWES---LK 93

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             ER  I   L FFA+S+ +V  N++    + +  PE R +   Q   E +HS  +  +I
Sbjct: 94  VGERHFISYVLAFFAASDGIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLLI 153

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   LFN    +  +  KA WAL +              D+   F + L  F
Sbjct: 154 DTYIKDSKERDFLFNAISNLTCVAKKAQWALDWI------------GDSKSTFAERLVAF 201

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             V EG++F   FA I  L +   M G++   + I RDE LH +F   +   I  + P  
Sbjct: 202 AAV-EGVFFSGSFAAIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLFKHIIKKPP-- 258

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
                +++  +++ EA L+E  +  E +P   +G+N     QY++FIA+R   ++G E +
Sbjct: 259 -----KERVESIIREAVLIEQEFLSEALPVSLIGMNCKLMCQYIEFIADRLLVELGYEKM 313

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           + +++NPF +M E I ++ + NFFE RV EYQ+   + 
Sbjct: 314 Y-HSDNPFDFM-ENISIEGKTNFFEKRVGEYQRAGVMS 349


>gi|18859327|ref|NP_571525.1| ribonucleoside-diphosphate reductase subunit M2 [Danio rerio]
 gi|292624782|ref|XP_002665783.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Danio rerio]
 gi|3914657|sp|P79733|RIR2_DANRE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
           AltName: Full=Ribonucleotide reductase protein R2 class
           I; AltName: Full=Ribonucleotide reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|1695831|gb|AAB37103.1| ribonucleotide reductase protein R2 class I [Danio rerio]
 gi|27881838|gb|AAH44355.1| Ribonucleotide reductase M2 polypeptide [Danio rerio]
 gi|56207929|emb|CAI21240.1| ribonucleotide reductase M2 polypeptide [Danio rerio]
 gi|182889152|gb|AAI64707.1| Rrm2 protein [Danio rerio]
          Length = 386

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/341 (26%), Positives = 156/341 (45%), Gaps = 28/341 (8%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
             K+  V+++ +L        + P++Y   W+ Y  A  + W   EV +  DL  W   +
Sbjct: 58  KAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHW---D 114

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  + 
Sbjct: 115 SLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYS 174

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +I +   D  E   LFN    +P +  KA+WAL +                      + 
Sbjct: 175 LLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNWIG-------------DKNARYGER 221

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +    
Sbjct: 222 VVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLIN-- 279

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                K  ++  + ++  A  +E  +  + +P   +G+N    +QY++F+A+R   ++G 
Sbjct: 280 -----KPSEETVKKIIMNAVEIEQEFLTDALPVKLIGMNCDLMKQYIEFVADRLLLELGF 334

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           + +++  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 335 DKVYRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 373


>gi|49899161|gb|AAH75746.1| Ribonucleotide reductase M2 polypeptide [Danio rerio]
          Length = 386

 Score =  264 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/341 (26%), Positives = 157/341 (46%), Gaps = 28/341 (8%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
             K+  V+++ +L        + P++Y   W+ Y  A  + W   EV +  DL  W   +
Sbjct: 58  KAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHW---D 114

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  + 
Sbjct: 115 SLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYS 174

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +I +   D  E   LFN    +P +  KA+WAL +                      + 
Sbjct: 175 LLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNWIG-------------DKNARYGER 221

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +    
Sbjct: 222 VVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL---- 277

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
               +K  ++  + ++  A  +E  +  + +P   +G+N    +QY++F+A+R   ++G 
Sbjct: 278 ---ISKPSEETVKKIIMNAVEIEQEFLTDALPVKLIGMNCDLMKQYIEFVADRLLLELGF 334

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           + +++  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 335 DKVYRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 373


>gi|195401438|ref|XP_002059320.1| GJ18335 [Drosophila virilis]
 gi|194142326|gb|EDW58732.1| GJ18335 [Drosophila virilis]
          Length = 394

 Score =  264 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 157/344 (45%), Gaps = 28/344 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++    + +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W 
Sbjct: 63  MEKIAAQFDPTVEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW- 121

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               LTD+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 122 --ARLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 179

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  +   LFN    +P++  KA+WAL +  +                  
Sbjct: 180 MYSVLIDTYIRDPHQRDYLFNAIETMPAVKRKADWALSWISS-------------KAANF 226

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +   + 
Sbjct: 227 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLV 286

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   +  +++   ++ +A  +E  +  + +P   +G+N     +Y++F+A+R   +
Sbjct: 287 Q-------RPCRERIIEIISDAVTIEQEFLTDALPVNLIGMNCALMSEYIEFVADRLLVE 339

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +G+  L+  T+NPF +M E+I L  + NFFE +V EYQ+     
Sbjct: 340 LGVGKLYN-TKNPFTFM-EMISLDGKTNFFEKKVGEYQRMGVTS 381


>gi|154337607|ref|XP_001565036.1| ribonucleoside-diphosphate reductase small chain [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134062075|emb|CAM45178.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 392

 Score =  264 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 28/340 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +  N +++ +         L P++Y   W KY    +  W   E+ + +D+  W     
Sbjct: 64  AEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDW---VA 120

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q   E +HS T+  
Sbjct: 121 LNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSV 180

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           ++ +   D  E   L +  + +P I  KA WA+++  +                F + L 
Sbjct: 181 LLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGS-------------SASFQERLI 227

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
            F  V EG++F   F  +  L +   M G+    + I RDE LH +F   +       N 
Sbjct: 228 GFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------NS 280

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++F+A+R    +G E
Sbjct: 281 HIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEE 340

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             +  T+ PF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 341 KHYNATQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 378


>gi|291244313|ref|XP_002742041.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like
           [Saccoglossus kowalevskii]
          Length = 463

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/344 (26%), Positives = 162/344 (47%), Gaps = 28/344 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +     +    ++ +L    D   + P+KY   W+ Y  A  + W   EV +  DL  W 
Sbjct: 131 LTQATTKDLEAEETLLKPNIDRFVVFPIKYQDIWKYYKKAQASFWTVEEVDLGKDLPDW- 189

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L ++ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 190 --VKLKEEERRFISHVLAFFAASDGIVLENLVQRFSQEVQVAEARCFYGFQIAMENVHSE 247

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   ++ E   LF+    +P +  KA+WA+++ Q+             +  F 
Sbjct: 248 MYSLLIDAYIKEQEEKTRLFHAIDNMPCVKKKADWAIEWIQS------------EESSFG 295

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + L  F  V EG++F   FA I    +   + G+    + I RDE LH +F   + + + 
Sbjct: 296 ERLVAFAAV-EGIFFSGAFASIFWFKKRGLLPGLTFSNELISRDEGLHCDFACLIFSHLT 354

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   K  +++ R ++ +A  +E  + +E +P G +G+N      Y++F+A+R   +
Sbjct: 355 -------YKPSKERIRNIITQAVDIEKEFWNEALPVGLIGMNVTLMNYYVEFVADRLLLE 407

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +  + ++ + ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 408 LNCDKVY-HRENPFDFM-ENISLEGKTNFFEKRVGEYQKANVMS 449


>gi|223996990|ref|XP_002288168.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975276|gb|EED93604.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 335

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 93/351 (26%), Positives = 157/351 (44%), Gaps = 30/351 (8%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +S  +  E      ++ +L        L P+K    W+ Y  A  + W   E+ + +DL 
Sbjct: 1   MSDHRRAESEGRHAEEPLLKENPGRFVLFPIKEPEIWKMYKKAEASFWTAEEIDLAEDLK 60

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+S   L+ +ER  +   L FFA+S+ +V  N+       +++ E R +   Q   E +
Sbjct: 61  DWES---LSINERHFVSHVLAFFAASDGIVNENLTGNFSTEVTSAEARCFYGFQIAVENI 117

Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS T+  +I +   D  E   L N    VP +  KANWAL++                + 
Sbjct: 118 HSETYSLLIDTYIKDAQEKDHLLNAIETVPCVQKKANWALRWCDA------------GNA 165

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            F +    F  V EG++F   F  I  L +   M G+    + I RDE LH +F   + +
Sbjct: 166 SFAERCIAFAAV-EGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHCDFACLIYS 224

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           ++  + P       + +   ++  A  +E  +  + +P   +G+N+    QY++F A+R 
Sbjct: 225 KLVNQLP-------ESRIEEIITNAVEIEKEFVSDALPVELIGMNSKLMCQYIEFCADRL 277

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL--KWD 352
              +G +  +    NPF WM E+I L+ + NFFE RV EY +      K D
Sbjct: 278 LGALGCKKHY-MAVNPFEWM-EMISLQGKTNFFEKRVGEYAKSGVGVNKDD 326


>gi|302678465|ref|XP_003028915.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8]
 gi|300102604|gb|EFI94012.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8]
          Length = 331

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 154/333 (46%), Gaps = 27/333 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
             ++ +L        L P++Y   W+ Y  A  + W   E+ +  DL  W+  N + D+E
Sbjct: 4   ASEEPLLKESIRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWQ--NRMNDNE 61

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS T+  +I + 
Sbjct: 62  RHFISHVLAFFAASDGIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTY 121

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             +  E   LFN    +P +  KA WAL++              D    F   L  F  V
Sbjct: 122 IREAAEREHLFNAVETIPCVARKAQWALRWIN------------DDRSSFGIRLVAFAAV 169

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE +H +F   +   ++        +
Sbjct: 170 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELITRDEGMHTDFACLLFAHLRR-------R 221

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
                 R ++ EA  +E  +  + +P   +G+N+    QY++F+A+R    +G E ++  
Sbjct: 222 PHPDVVRRIIMEAVTIEQEFLTDALPVSLIGMNSTLMCQYIEFVADRLLVALGNEKVYNV 281

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           T NPF +M  +I L+ + NFFE RV++Y+  A 
Sbjct: 282 T-NPFDFMD-MISLQGKTNFFEKRVSDYKMAAV 312


>gi|15229476|ref|NP_189000.1| RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate
           reductase [Arabidopsis thaliana]
 gi|27735240|sp|P50651|RIR2A_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain A;
           AltName: Full=Ribonucleoside-diphosphate reductase R2A
           subunit; Short=AtRNR2; Short=Protein R2at; AltName:
           Full=Ribonucleotide reductase small subunit A
 gi|13937232|gb|AAK50108.1|AF372971_1 AT3g23580/MDB19_7 [Arabidopsis thaliana]
 gi|9294514|dbj|BAB02776.1| ribonucleotide reductase [Arabidopsis thaliana]
 gi|23505945|gb|AAN28832.1| At3g23580/MDB19_7 [Arabidopsis thaliana]
 gi|332643258|gb|AEE76779.1| Ribonucleoside-diphosphate reductase small chain A [Arabidopsis
           thaliana]
          Length = 341

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 157/334 (47%), Gaps = 29/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +L A++    + P++Y   WE Y  A  + W   EV +  D+  W+    LTD E+
Sbjct: 17  SEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWE---ALTDSEK 73

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS  +  ++ +  
Sbjct: 74  HFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFI 133

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I+ KA W L + Q+                F   L   +   
Sbjct: 134 KDSKEKDRLFNAIETIPCISKKAKWCLDWIQS-------------PMSFAVRLVA-FACV 179

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE LH +F   + + ++ + P      
Sbjct: 180 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLPL----- 234

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             +K   ++HEA  +E  +  + +P   +G+N+    QY+QF+A+R    +G E  +K  
Sbjct: 235 --EKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADRLLVTLGCERTYK-A 291

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ENPF WM E I L+ + NFFE RV EYQ+ + + 
Sbjct: 292 ENPFDWM-EFISLQGKTNFFEKRVGEYQKASVMS 324


>gi|79160106|gb|AAI08038.1| Rrm2b protein [Danio rerio]
          Length = 349

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/352 (30%), Positives = 167/352 (47%), Gaps = 31/352 (8%)

Query: 5   TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           T ++  Q G K V+   V+D+ +L        + P++Y   W+ Y  A  + W   EV +
Sbjct: 10  TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   +GL  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q 
Sbjct: 70  SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS  +  +I +   D  E   LFN  + +P +  KA+WALQ+             
Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWI------------ 174

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  F + L  F  V EG++F   FA I  L R   M G+    + I RDE LH NF 
Sbjct: 175 SDTNSTFGERLVAFAAV-EGIFFSGSFAAIYWLKRRGLMPGLTYSNELISRDEGLHCNFA 233

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + +         K    +   ++ +A  +E  +  E +P   +G+N    +QY++F
Sbjct: 234 CLMYSYLVK-------KPSVDRVNDIIAKAVSIEQEFLTEALPVNLIGMNCSLMKQYIEF 286

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +GL   +  +ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 287 VADRLLTDLGLPKAY-CSENPFDFM-ESISLEGKTNFFEKRVAEYQRLGVMS 336


>gi|146090952|ref|XP_001466403.1| ribonucleoside-diphosphate reductase small chain [Leishmania
           infantum JPCM5]
 gi|321399462|emb|CBZ08664.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania infantum JPCM5]
          Length = 392

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/361 (26%), Positives = 164/361 (45%), Gaps = 37/361 (10%)

Query: 2   ANNTGLSPIQAGE---------KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52
           A +  + P+ AG          K  N +++ +         L P++Y   W KY    + 
Sbjct: 43  AEDLVMKPVAAGTEVLTADKVAKGTNAEEEPLQQENPLRYVLFPIQYHDIWRKYKEQESC 102

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
            W   E+ + +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE
Sbjct: 103 IWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPE 159

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTL 169
            R +   Q   E +HS T+  ++ +   D  E   L +  + +P I  KA WA+++  + 
Sbjct: 160 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGS- 218

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                          F + L  F  V EG++F   F  +  L +   M G+    + I R
Sbjct: 219 ------------SASFQERLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISR 265

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE LH +F   +       N H+  K  +++   ++ +A  +E  +  + +P   +G+NA
Sbjct: 266 DEGLHTDFACLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNA 319

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
               QY++F+A+R    +G E  ++ T+ PF +M E+I L+ + NFFE +V EYQ+   +
Sbjct: 320 ELMAQYIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVM 377

Query: 350 K 350
            
Sbjct: 378 S 378


>gi|326797773|ref|YP_004315592.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
 gi|326548537|gb|ADZ76922.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
          Length = 323

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/335 (26%), Positives = 156/335 (46%), Gaps = 30/335 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           ++ +++ +L    D   +LP+ Y   W+ Y     + W   E+ +  DL  W     L D
Sbjct: 1   MSQENEVLLRENKDRFVILPINYPAIWDMYKKHEASFWTAEEIDLSGDLKDW---ANLND 57

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            ER  I   L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS T+  +I 
Sbjct: 58  GERHFISHVLAFFAASDGIVNENLAINFMSEVQLPEARSFYGFQIAMENIHSETYALLID 117

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LF+    V  +  KA WAL++ +  S                 +  V +
Sbjct: 118 TYVKDPVEKDRLFHAIETVECVKKKAEWALRWIENGS---------------FAERLVAF 162

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  I  L +   M G+    + I RDE LH  F   + + ++ + P   
Sbjct: 163 AAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLYSMLEAKLP--- 219

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +++ + ++ +A  +E  +  + +P   +G+NA   +QY++F+A+R   ++G    +
Sbjct: 220 ----KERVQEIIIDAVEIEKEFITDALPVKLIGMNADLMKQYIEFVADRWLVELGNSKYY 275

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
             T NPF +M E+I L+ + NFFE RV +YQ+   
Sbjct: 276 NAT-NPFDFM-ELISLQGKTNFFEKRVGDYQKSGV 308


>gi|2465173|emb|CAA71741.1| ribonucleotide reductase (Class I) [Trypanosoma brucei brucei]
          Length = 337

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/333 (27%), Positives = 158/333 (47%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+KY   W+KY  A ++ W   E+ + +D+  W+    L D ER 
Sbjct: 16  EEPLLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  +
Sbjct: 73  FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   L +  R +P I  KA WA+++  + +S             F   L  F  V E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVAFAAV-E 178

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +  +       +  K  
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKY------IVNKLP 232

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + +   ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M  +I L+ + NFFE +V EYQ+   + 
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|156087150|ref|XP_001610982.1| ribonucleoside-diphosphate reductase small subunit [Babesia bovis
           T2Bo]
 gi|154798235|gb|EDO07414.1| ribonucleoside-diphosphate reductase small subunit, putative
           [Babesia bovis]
          Length = 339

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 98/333 (29%), Positives = 164/333 (49%), Gaps = 29/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +L    + N L P+KY   WE Y  A  + W   E+ +  DL  W +   LT+ E 
Sbjct: 19  SEEFILVEDPNRNGLYPIKYPDFWEWYKKAQASFWTSEEIDLSSDLKDWGT---LTEGEH 75

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             IK  L FFA+S+ +V  N+ L   + +  PE + +   Q   E +HS T+  +I    
Sbjct: 76  HFIKNVLAFFAASDGIVLENLALRFLKDVKLPEAKFFYCFQITVENIHSETYSLLIEQYI 135

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            DE E   LF     + ++  KA WA ++                D++   +  V Y   
Sbjct: 136 RDEAEKDRLFRAIETIDAVRDKAIWAAKWMN--------------DEKSFAERIVAYAAV 181

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE LH +FG  + +++K + P      
Sbjct: 182 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYSKLKHKLPA----- 236

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             +  + ++ EA  +E  +  +++P   +G+N+    QY++F+A+R    +G+ P++K T
Sbjct: 237 --ECVQQIIKEAVAVERVFVCDSLPTDLIGMNSMLMAQYIEFVADRLLQALGVPPVYK-T 293

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +NPF WM E+I ++ + NFFE RV EYQ+   L
Sbjct: 294 KNPFEWM-ELISVQGKTNFFEKRVGEYQKSGIL 325


>gi|157126966|ref|XP_001654749.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti]
 gi|15638625|gb|AAL05057.1|AF411297_1 ribonucleotide reductase 2 [Aedes aegypti]
 gi|82469974|gb|ABB77235.1| ribonucleotide reductase small subunit R2 [Aedes aegypti]
 gi|108873070|gb|EAT37295.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti]
          Length = 397

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 93/352 (26%), Positives = 161/352 (45%), Gaps = 28/352 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A N   +  +  +   +   + +L        + P++Y   W+ Y  A  + W   EV 
Sbjct: 57  LAKNELSAAQKREQTPFDPSIEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVD 116

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  DLA W+    L   E+  I   L FFA+S+ +V  N+V    + +   E R +   Q
Sbjct: 117 LSKDLADWE---KLKSGEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQ 173

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E VHS  +  +I +   D  E   LFN    +P +  KA+WAL +  +         
Sbjct: 174 IAMENVHSEMYSLLIDTYIRDSKEREYLFNAIDNLPCVKKKADWALNWISS--------- 224

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 225 ----KKANFGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 280

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +   +         K  Q++   ++ EA L+E  +  + +P   +G+N     QY++
Sbjct: 281 ACLMFKYLVQ-------KPSQERVIEIIREAVLIEQEFLTKALPVDLLGMNCDLMSQYIE 333

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           F+A+R   ++G++ ++  T+NPF +M E I L+ + NFFE +V EYQ+   +
Sbjct: 334 FVADRLLLELGIDKIYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 383


>gi|4894211|gb|AAD32302.1| ribonucleotide reductase small subunit [Glycine max]
          Length = 339

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 155/342 (45%), Gaps = 29/342 (8%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            G  +   + + +L  +S    + P++Y   WE Y  A  + W   EV +  D+  W++ 
Sbjct: 7   NGVDKARDEQEPILMEQSQRFCMFPIRYKQIWEMYKKAEASFWTAEEVDLSYDVQHWET- 65

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L+  E+  I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS  +
Sbjct: 66  --LSVSEKHFITHVLAFFAASDGIVLENLAARFLSDVQIPEARAFYGFQIAMENIHSEMY 123

Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             ++ +   D  E   LFN    +P +  KA WAL +  + +S                +
Sbjct: 124 SLLLETYIKDSREKHKLFNAIENLPCVARKAEWALSWIHSSTS--------------FAE 169

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V +   EG++F   F  I  L +   M G+    + I RDE LH +F   + + ++  
Sbjct: 170 RLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK- 228

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
                      +   ++HEA  +E  +  + +P   +G+N+    QY++F+A+R    +G
Sbjct: 229 ------PLISDQVHKLVHEAVEIETEFVCDALPCALIGMNSVLMSQYIKFVADRLLVALG 282

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            +  +   ENPF WM E I L+ + NFFE RV +YQ+ + + 
Sbjct: 283 YQRKYNV-ENPFDWM-EFISLQGKANFFERRVGDYQKASVMS 322


>gi|110636874|ref|YP_677081.1| ribonucleoside-diphosphate reductase 1 subunit beta [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279555|gb|ABG57741.1| ribonucleoside-diphosphate reductase 1, beta subunit [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 324

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 153/332 (46%), Gaps = 29/332 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    +   L P+K+   W  Y     + W   E+ +  DL  W     L D ER 
Sbjct: 5   EEPLLKENKNRFVLFPIKHDDIWAMYKQEEASFWTAEEIDLSQDLIDW---ANLNDGERH 61

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+ +     +  PE + +   Q   E +HS T+  +I +   
Sbjct: 62  FISHVLAFFAASDGIVNENLAVNFLEKVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIK 121

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LFN    VP +  KA+WAL++    S                 +  + +   E
Sbjct: 122 DPKEKDRLFNAIDTVPCVKKKADWALRFIDNGS---------------FIENIIAFAAVE 166

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  +  L +   M G++   + I RDE LH +F   +  +          K  
Sbjct: 167 GIFFSGSFCSVFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYTKYIN------NKLP 220

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            ++   ++ EA  +E  +  +++P   +G+NA   +QY++F+A+R    +G+   F  T 
Sbjct: 221 AERVIQIILEAVEIEKEFVTDSLPVDLIGMNARLMQQYIEFVADRLLVALGVPKQFNAT- 279

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E+I L+ + NFFE RV+EYQ+   +
Sbjct: 280 NPFDFM-EMISLQGKTNFFEKRVSEYQKSGVM 310


>gi|55742360|ref|NP_001007164.1| ribonucleoside-diphosphate reductase subunit M2 B [Danio rerio]
 gi|29561808|emb|CAD87804.1| novel protein similar to vertebrate ribonucleotide reductase M2 B
           (TP53 inducible) (RRM2B) [Danio rerio]
          Length = 349

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 105/352 (29%), Positives = 167/352 (47%), Gaps = 31/352 (8%)

Query: 5   TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           T ++  Q G K V+   V+D+ +L        + P++Y   W+ Y  A  + W   EV +
Sbjct: 10  TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   +GL  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q 
Sbjct: 70  SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS  +  +I +   D  E   LFN  + +P +  KA+WALQ+             
Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWI------------ 174

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  F + L  F  V EG++F   FA I  L +   M G+    + I RDE LH NF 
Sbjct: 175 SDTNSTFGERLVAFAAV-EGIFFSGSFAAIYWLKKRGLMPGLTYSNELISRDEGLHCNFA 233

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + +         K    +   ++ +A  +E  +  E +P   +G+N    +QY++F
Sbjct: 234 CLIYSYLVK-------KPSVDRVNDIIAKAVSIEQEFLTEALPVNLIGMNCSLMKQYIEF 286

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +GL   +  +ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 287 VADRLLTDLGLPKAY-CSENPFDFM-ESISLEGKTNFFEKRVAEYQRLGVMS 336


>gi|281200507|gb|EFA74725.1| ribonucleotide reductase small subunit [Polysphondylium pallidum
           PN500]
          Length = 335

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 92/331 (27%), Positives = 160/331 (48%), Gaps = 28/331 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   L P+KY   W+ Y  A  + W   E+ +  D+  W+  N L D+ER 
Sbjct: 6   EEPILKENKDRFVLFPIKYADIWQMYKKAEASFWTAEEIDLAGDIGDWE--NKLNDNERH 63

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +   
Sbjct: 64  FITNVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIK 123

Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D   +  +F+    +P++  KA+WAL++                 + F + L  F  V E
Sbjct: 124 DSETKRNIFHAIDTIPAVKKKADWALRWI-------------SNSKSFAERLVAFAAV-E 169

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +  +++ +  +      
Sbjct: 170 GIFFSGSFCSIFWLKKRGLMHGLTFSNELISRDEGLHCDFACLLYQKLQNKLDNNT---- 225

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                T++ +A   E  +  E++P   +G+N+ S  QY++F A+R    +G + ++  + 
Sbjct: 226 ---IETIIRDAVACEKEFITESLPVDLIGMNSRSMSQYIEFCADRLLLSLGYKKIYN-SS 281

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           NPF WM E+I L+++ NFFE +V+EYQ+   
Sbjct: 282 NPFDWM-EMISLQRKTNFFEGKVSEYQKSGV 311


>gi|194883840|ref|XP_001976005.1| GG22616 [Drosophila erecta]
 gi|190659192|gb|EDV56405.1| GG22616 [Drosophila erecta]
          Length = 393

 Score =  263 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 154/342 (45%), Gaps = 28/342 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++      +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W 
Sbjct: 62  MERSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L DDER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSE 178

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  +   LFN    +P++  KA+WAL +  +                  
Sbjct: 179 MYSVLIDTYIRDPNQREYLFNAIETMPAVKRKADWALSWISS-------------KSANF 225

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +   + 
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLV 285

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   +   ++   ++ +A  +E  +  + +P   +G+N     QY++F+A+R   +
Sbjct: 286 Q-------RPKHERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +G+  ++  T+NPF +M E+I L  + NFFE +V EYQ+   
Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVAEYQRMGV 378


>gi|94986920|ref|YP_594853.1| ribonucleotide reductase, beta subunit [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731169|emb|CAJ54531.1| Ribonucleotide reductase, beta subunit [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 333

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 139/337 (41%), Positives = 191/337 (56%), Gaps = 5/337 (1%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            VN  DKR++N ++D+NQLLP +Y WAW+ +L A  NHW P E+ M  D+  +     LT
Sbjct: 2   PVNASDKRIVNGKTDINQLLPFRYPWAWDFFLKANQNHWTPLEISMSQDVYDYNHT--LT 59

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +ER +    L +  +S+ L   NI LA+   ++ PE + Y  RQ +EEA+H+ T+Q+ I
Sbjct: 60  TNERHVFDNVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHCI 119

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            SLGL++ E++N YR VP I  K   + +  + +         KD   EF+     F  +
Sbjct: 120 ESLGLEQSEIYNRYRVVPEIYGKILLSNKRLEQVLRSDINLSDKDNLHEFIMSYIFFAAI 179

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
           FEG WFY GF+ I SL R   M G AEQ+QYI+RDE LH  FGI VI  +  E       
Sbjct: 180 FEGCWFYNGFSPIFSLQRRGLMKGTAEQFQYILRDEVLHCTFGITVIKGLIEEENITLDP 239

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
                 R +  E    EIAYA+  + +  +G NA       +FIANRR  Q+G++  F  
Sbjct: 240 T---AVRQLWDEVEAAEIAYANYILHEPIIGYNADLHIGQFRFIANRRSRQLGMKEPFPG 296

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            +N  PW+ E  +L+KEKNFFETRVTEYQ G  LKWD
Sbjct: 297 AKNVLPWLDEQSNLRKEKNFFETRVTEYQTGGGLKWD 333


>gi|167519412|ref|XP_001744046.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778008|gb|EDQ91624.1| predicted protein [Monosiga brevicollis MX1]
          Length = 329

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 94/339 (27%), Positives = 160/339 (47%), Gaps = 28/339 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
              +  + +L A      +LP+++   W+ Y  A  + W   EV +  DL  W   N L 
Sbjct: 4   PEEIQAEPLLRANPRRFVILPIQHDAIWKMYKKAEASFWTVEEVDLGRDLVDW---NKLN 60

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            DE+  IK  L FFA+S+ +V  N+V      +  PE R +   Q   E +HS  +  +I
Sbjct: 61  KDEQFFIKHVLAFFAASDGIVNENLVERFMTEVQLPEARCFYGFQIAIENIHSEMYSRLI 120

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   LFN    +P++  KA WA+++                D+    +  V 
Sbjct: 121 ETYVNDSAEKDSLFNAIETLPAVRRKAEWAMRWI-------------SHDKASFGERVVA 167

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE LH +F   + + +K      
Sbjct: 168 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFSMLKK----- 222

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             +  +++   ++ +A  +E  +    +P G +G+NA   +QY++F+++R    +G E +
Sbjct: 223 --RPSKERVTGIIMDAVEIEQDFLTNALPCGLLGMNATLMKQYIEFVSDRLLVALGCEKI 280

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           F  +ENPF +M E I ++ + NFFE RV EYQ+   +  
Sbjct: 281 FN-SENPFDFM-ESISIEGKTNFFEKRVGEYQKAGVMAD 317


>gi|322493026|emb|CBZ28311.1| ribonucleoside-diphosphate reductase small chain,putative
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 388

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 92/352 (26%), Positives = 158/352 (44%), Gaps = 28/352 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A    + P     +  N +++ +         L P++Y   W KY    +  W   E+ +
Sbjct: 48  APGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDL 107

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
            +D+  W     L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q 
Sbjct: 108 GNDMKDW---AALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQL 164

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  ++ +   D  E   L +  + +P I  KA WA+++  +          
Sbjct: 165 MMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWIGS---------- 214

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                 F + L  F  V EG++F   F  +  L +   M G+    + I RDE LH +F 
Sbjct: 215 ---SASFQERLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFA 270

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             +       N H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++F
Sbjct: 271 CLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEF 324

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +G E  +  T+ PF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 325 VADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 374


>gi|149279601|ref|ZP_01885730.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter
           sp. BAL39]
 gi|149229637|gb|EDM35027.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter
           sp. BAL39]
          Length = 324

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 90/334 (26%), Positives = 153/334 (45%), Gaps = 30/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +++ +L    D   LLP+KY   WE Y  +  + W   E+ + DD   W   + L D ER
Sbjct: 3   EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FF++S+ +V  N+ +     +  PE R +   Q   E +HS T+  +I +  
Sbjct: 60  HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LF+    VP +  KA WAL++                      +  V +   
Sbjct: 120 KDPEEKDRLFHAIETVPCVKKKAEWALRWIDN---------------GNFAERLVAFAAV 164

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE  H  F   + + +K +        
Sbjct: 165 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGSHCEFACLLYSMLKNKLS------ 218

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            ++    ++ +A  +E  +  + +P   +G+NA    QY++F+A+R   ++G   ++ + 
Sbjct: 219 -EEHVHGIIRDAVEIEKEFVTDALPVALIGMNAKLMSQYIEFVADRWLQELGYTKIY-HA 276

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPF +M E+I L+ + NFFE RV +YQ+   L 
Sbjct: 277 TNPFDFM-EMISLQGKTNFFEKRVGDYQKSGVLT 309


>gi|90660281|gb|ABD97395.1| ribonucleotide reductase small subunit [Cowpox virus]
          Length = 333

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 89/337 (26%), Positives = 152/337 (45%), Gaps = 29/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           VN+  + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT 
Sbjct: 11  VNLVMEPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I 
Sbjct: 68  DEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLID 127

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LFN    +P +  KA+WA ++                D     +  + +
Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAF 173

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +   +        
Sbjct: 174 TAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL------- 226

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               ++  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++
Sbjct: 227 HPPSEETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIY 286

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             T NPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 287 NVT-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321


>gi|195027582|ref|XP_001986661.1| GH20400 [Drosophila grimshawi]
 gi|193902661|gb|EDW01528.1| GH20400 [Drosophila grimshawi]
          Length = 393

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 88/352 (25%), Positives = 159/352 (45%), Gaps = 31/352 (8%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A  T +  + A     +   + +L        + P++Y   W+ Y  A  + W   EV +
Sbjct: 57  AKGTIMEKVAAP---FDPSIEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDL 113

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+  W     LTD+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q 
Sbjct: 114 SKDMTDW---VRLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQI 170

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS  +  +I +   D  +   LFN    +P++  KA+WAL +  +          
Sbjct: 171 AMENVHSEMYSVLIDTYIRDPHQRDYLFNAIETMPAVKRKADWALSWISS---------- 220

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                    +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 221 ---KAANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 277

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
           + +   +         +  +++   ++ +A  +E  +  + +P   +G+N     +Y++F
Sbjct: 278 VMMFQHLVQ-------RPSRERIIEIVSDAVTIEQEFLTDALPVNLIGMNCALMSEYIEF 330

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R   ++G+  ++  T+NPF +M E+I L  + NFFE +V EYQ+     
Sbjct: 331 VADRLLVELGVGKIYN-TKNPFTFM-EMISLDGKTNFFEKKVGEYQRMGVTS 380


>gi|145580571|pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
           Subunit R2
          Length = 332

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 93/335 (27%), Positives = 156/335 (46%), Gaps = 28/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +E
Sbjct: 10  VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 66

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 67  RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 126

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LFN    +P +  KA+WAL++                 +    +  V +  
Sbjct: 127 IKDPKEREFLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVAFAA 173

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +   +         K
Sbjct: 174 VEGIFFSGSFASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HK 226

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+ 
Sbjct: 227 PSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV 286

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 287 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 319


>gi|300709535|ref|YP_003735349.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus
           jeotgali B3]
 gi|299123218|gb|ADJ13557.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus
           jeotgali B3]
          Length = 330

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 161/331 (48%), Positives = 229/331 (69%), Gaps = 4/331 (1%)

Query: 23  RMLN--ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            ++N  +  D N++LP+ Y WA E Y +   N+W P EVPM DD+  W++ + L+ +ER 
Sbjct: 2   PLINTESHHDPNKILPIDYDWAREYYKAGVANNWTPEEVPMADDVHQWEN-DELSSEERQ 60

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +++ NLGFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y   SLG 
Sbjct: 61  LVEWNLGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGF 120

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           D   L+ MY  +P+I AK  + +  TQ +  P F   + +  +EFL+DL  FYV+ EG++
Sbjct: 121 DPEYLYGMYDRIPAIEAKDEFVVDLTQVIDDPDFEISSDEDVREFLRDLVGFYVIMEGIF 180

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY GFA +L L R  KMVG+ EQ++YIMRDESLHLNFG+D+IN ++ EN  +WT  F+ +
Sbjct: 181 FYAGFAMMLGLKRQGKMVGVGEQFEYIMRDESLHLNFGVDLINTVREENSGIWTDVFEAE 240

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              +L EA  LE  YA E  P+  +G+      +Y++++A+RR  Q+G+EP++  T+NPF
Sbjct: 241 IEGLLREAVELERTYAREACPEEVLGMGPAQFAEYVEYVADRRLDQLGMEPVYD-TDNPF 299

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           PWM+E +DL KEKNFFET V EYQ G  L+W
Sbjct: 300 PWMAEQVDLNKEKNFFETNVAEYQSGGSLEW 330


>gi|255079598|ref|XP_002503379.1| predicted protein [Micromonas sp. RCC299]
 gi|226518645|gb|ACO64637.1| predicted protein [Micromonas sp. RCC299]
          Length = 335

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 95/332 (28%), Positives = 156/332 (46%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+   D   + P+KYG  WE Y  A  + W   EV + DD+  W   N L +DE+  
Sbjct: 15  EPLLDPNDDRFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMVHW---NKLNNDEKHF 71

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS  +  +I +   D
Sbjct: 72  IKHILAFFAASDGIVLENLGVRFMGEVQFPEARAFYGFQIAIENIHSEMYSLLIDAYVKD 131

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LF   + +P I  KA+WA ++ ++ +                 +  + +   EG
Sbjct: 132 AQEKTYLFQAIQNIPCIAKKADWAFKWIESSAD--------------FAERLIAFACIEG 177

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   + + I         K  +
Sbjct: 178 IFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLYSYINK-------KPNE 230

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
              R ++ EA  +E  +  + +P   VG+NA    +Y++F+A+    Q+G+   +    N
Sbjct: 231 SVVRQIVKEAVEIEKEFVCDALPCALVGMNADLMSEYIEFVADHLLGQLGMSKEYNAA-N 289

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF WM E+I L+ + NFFE RV EYQ+   + 
Sbjct: 290 PFDWM-ELISLQGKTNFFEKRVGEYQKSGVMN 320


>gi|301117384|ref|XP_002906420.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
           infestans T30-4]
 gi|262107769|gb|EEY65821.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
           infestans T30-4]
          Length = 379

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 86/346 (24%), Positives = 160/346 (46%), Gaps = 28/346 (8%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +S  +  E    +  +  L    +   L P++    W+ Y  A  + W   E+ +  DL 
Sbjct: 45  MSEFKRKEMNGEIPIEPFLVENPNRFVLFPIQEHEVWQMYKKAEASFWTAEELDLVHDLK 104

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W   + LTD+ER  IK  L FFA+S+ +V  N+ +     +  PE R +   Q   E +
Sbjct: 105 DW---SKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENI 161

Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS  +  +I +   D  E   L      +P +T KA+WA+++              D   
Sbjct: 162 HSEVYSLLIDTYIKDAIEKDHLLRAIETIPCVTKKAHWAIKW-------------CDPRV 208

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
               +  + +   EG++F   F  I  L +   M G++   + I RDE +H +F   + +
Sbjct: 209 SSYPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGMHTDFACLLYS 268

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           ++  + P       + +   ++ +A  +E  +  +++P   +G+N+    QY++F+A+R 
Sbjct: 269 KLVTKLP-------ESRVHEIVRDAVTIEHEFVRDSLPVELIGMNSGLMCQYIEFVADRL 321

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            + +G+  ++ + +NPF WM  +I L+ + NFFE RV EY +    
Sbjct: 322 LYSLGVSKIY-HAKNPFDWMD-MISLQGKTNFFEKRVGEYSKAGVG 365


>gi|73544537|ref|XP_848163.1| ribonucleoside-diphosphate reductase small chain [Leishmania major
           strain Friedlin]
 gi|321438516|emb|CBZ12275.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania major strain Friedlin]
          Length = 388

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 93/352 (26%), Positives = 160/352 (45%), Gaps = 28/352 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A    + P     +  N +++ +         L P++Y   W KY    +  W   E+ +
Sbjct: 48  AAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDL 107

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
            +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q 
Sbjct: 108 GNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQL 164

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  ++ +   D  E   L +  + +P I  KA WA+++  +          
Sbjct: 165 MMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGS---------- 214

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                 F + L  F  V EG++F   F  +  L +   M G+    + I RDE LH +F 
Sbjct: 215 ---SASFQERLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFA 270

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             +       N H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++F
Sbjct: 271 CLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEF 324

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +G E  ++ T+ PF +M E+I L+ + NFFE RV EYQ+   + 
Sbjct: 325 VADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMS 374


>gi|226528734|ref|NP_001150842.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
 gi|195642302|gb|ACG40619.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
          Length = 339

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 150/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L   SD   + P+++   WE Y  A  + W   EV +  D   W     L+ DER 
Sbjct: 14  EEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVGLSADARHWDE--ALSPDERH 71

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   
Sbjct: 72  FISHVLAFFAASDGIVLENLASRFMTDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF     VP++  KA+WA+++                      +  V +   E
Sbjct: 132 DHVEKDRLFRAIDTVPAVRRKADWAMRWIDGGER--------------FAERIVAFACVE 177

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +   ++ +         
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYELLRNKLD------- 230

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + + R ++ +A  +E  +  + +P   VG+N     QY++F+A+R    +G + ++  T 
Sbjct: 231 EARVREIVADAVDIEREFVCDALPVALVGMNGDLMSQYIEFVADRLLMALGCKKMYNVT- 289

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF WM E+I L  + NFFE RV +YQ+ + + 
Sbjct: 290 NPFDWM-ELISLMGKTNFFEKRVGDYQKASVMN 321


>gi|311748425|ref|ZP_07722210.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus
           sp. PR1]
 gi|126576938|gb|EAZ81186.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus
           sp. PR1]
          Length = 326

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 153/335 (45%), Gaps = 29/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           +  + +L+   +   L P+++   WE Y  A  + W   E+ +  D+  WKS   L D E
Sbjct: 1   MQQEPILSENKNRFVLFPIQHADIWEYYKKAEASFWTAEEIDLGQDMVDWKS---LNDGE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I + 
Sbjct: 58  RHFISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGFQIAMENIHSETYSLLIDTY 117

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LFN    +  +  KA+WAL++                   F + L  F  V
Sbjct: 118 IKDPSERDKLFNAIEHIDCVKKKADWALRWIDN--------------GNFQERLIAFAAV 163

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   F  I  L +   M G+    + I RDE LH +F   +  +           
Sbjct: 164 -EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACHLYTKHV------VNP 216

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             ++  R ++ +A  +E  +  + +P   +G+N+    QY++F+A+R   ++  E ++  
Sbjct: 217 LPKETVREIIIDAVKIEKEFVTDALPVRLIGMNSDLMCQYIEFVADRLLLELDCEKVWN- 275

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           + NPF +M  +I L+ + NFFE RV +YQ+   +K
Sbjct: 276 STNPFDFMD-MISLQGKTNFFEKRVGDYQKAGVMK 309


>gi|56713400|gb|AAW23440.1| ribonucleoside-diphosphate reductase [Vaccinia virus]
 gi|56713684|gb|AAW23722.1| ribonucleoside-diphosphate reductase [Vaccinia virus]
 gi|88854075|gb|ABD52493.1| ribonucleoside-diphosphate reductase subunit [Vaccinia virus]
 gi|167412519|gb|ABZ79953.1| ribonucleotide reductase small subunit [Vaccinia virus GLV-1h68]
          Length = 319

 Score =  262 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|154340038|ref|XP_001565976.1| ribonucleoside-diphosphate reductase small chain [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134063294|emb|CAM45500.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 388

 Score =  262 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 28/340 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +  N +++ +         L P++Y   W KY    +  W   E+ + +D+  W     
Sbjct: 60  AEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDW---VA 116

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q   E +HS T+  
Sbjct: 117 LNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSV 176

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           ++ +   D  E   L +  + +P I  KA WA+++  +                F + L 
Sbjct: 177 LLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGS-------------SASFQERLI 223

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
            F  V EG++F   F  +  L +   M G+    + I RDE LH +F   +       N 
Sbjct: 224 GFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------NS 276

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++F+A+R    +G E
Sbjct: 277 HIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEE 336

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             +  T+ PF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 337 KHYNATQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 374


>gi|3914640|sp|O15910|RIR2_TRYBB RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase R2 subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|2411479|gb|AAB70705.1| ribonucleotide reductase small subunit [Trypanosoma brucei]
 gi|261335314|emb|CBH18308.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei gambiense DAL972]
          Length = 337

 Score =  262 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 91/333 (27%), Positives = 158/333 (47%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+KY   W+KY  A ++ W   E+ + +D+  W+    L D ER 
Sbjct: 16  EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  +
Sbjct: 73  FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   L +  R +P I  KA WA+++  + +S             F   L  F  V E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVAFAAV-E 178

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +  +       +  K  
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKY------IVNKLP 232

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + +   ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M  +I L+ + NFFE +V EYQ+   + 
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|56404698|sp|O57175|RIR2_VACCA RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|2772676|gb|AAB96415.1| ribonucleotide reductase, small subunit [Vaccinia virus]
 gi|47088360|gb|AAT10430.1| ribonucleotide reductase small subunit [Vaccinia virus]
 gi|160857924|emb|CAM58212.1| ribonucleotide reductase small subunit [Vaccinia virus Ankara]
          Length = 319

 Score =  262 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|255551489|ref|XP_002516790.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
           communis]
 gi|223543878|gb|EEF45404.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
           communis]
          Length = 342

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/331 (26%), Positives = 152/331 (45%), Gaps = 29/331 (8%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
            +L  ++    + P++Y   WE Y  A  + W   EV +  D+  W++   L+  E+  I
Sbjct: 21  PILKEQNQRFCMFPIRYKSLWEMYKKAEASFWTAEEVDLSQDVQQWET---LSVSEKHFI 77

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
              L FFA+S+ +V  N+       +  PE R +   Q   E +HS  +  ++ +   D 
Sbjct: 78  SHVLAFFAASDGIVLENLAARFLNDIQVPEARAFYGFQIAMENIHSEMYSLLLETYIKDS 137

Query: 143 GE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            E   LFN    +P +  KA WAL +  +                   +  V +   EG+
Sbjct: 138 REKNRLFNAIETIPCVARKAKWALDWIHS--------------SSLYAERLVAFACVEGI 183

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           +F   F  I  L +   M G+    + I RDE LH +F   + + ++ +          Q
Sbjct: 184 FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLQW-------Q 236

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
           K + ++HEA  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +   ENP
Sbjct: 237 KVQQIVHEAVEIETEFVCDALPCALIGMNSTLMSQYIKFVADRLLVALGYQRKYNV-ENP 295

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F WM E I L+ + NFFE RV +YQ+ + + 
Sbjct: 296 FDWM-EFISLQGKANFFERRVGDYQKASVMS 325


>gi|213511642|ref|NP_001133495.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar]
 gi|209154228|gb|ACI33346.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar]
          Length = 387

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 91/333 (27%), Positives = 153/333 (45%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        + P+KY   W+ Y  A  + W   EV +  D   W   + L D+ER 
Sbjct: 67  EEPLLKENPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDLSKDTQHW---DSLKDEERY 123

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +   
Sbjct: 124 FISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIK 183

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LFN    +P +  KA+WAL +              + +  F + +  F  V E
Sbjct: 184 DPKERDYLFNAIETLPCVKRKADWALNWI------------GNKNAGFGERVVAFAAV-E 230

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +   +         K  
Sbjct: 231 GIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HKPS 283

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++    ++  A  +E  +  + +P   +G+N     QY++F+A+R   ++G + +++  E
Sbjct: 284 KETVTKLIRNAVEIEQEFLTKALPVKLIGMNCDLMTQYIEFVADRLMLELGFDKIYRV-E 342

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 343 NPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 374


>gi|255037048|ref|YP_003087669.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM
           18053]
 gi|254949804|gb|ACT94504.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM
           18053]
          Length = 331

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 148/334 (44%), Gaps = 29/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
             + +L        L P+K+   WE Y     + W   E+ +  D+  W+    L+D ER
Sbjct: 7   RQEPLLTEDPLRFVLFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWE---NLSDGER 63

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FFA+S+ +V  N+ +     +   E + +   Q   E +HS T+  +I +  
Sbjct: 64  HFISHVLAFFAASDGIVNENLAVNFLSEVQYAEAKCFYGFQIAMENIHSETYSLLIDTYI 123

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   L      +P +  KA+WAL++  +                   +  + +   
Sbjct: 124 KDSAEKDRLLRAIETIPCVQKKADWALKWIDS---------------PVFAERIIAFAAV 168

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G++   + I RDE LH  F   +  +  +       + 
Sbjct: 169 EGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCEFACLLYTKHIL------NQL 222

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            Q++   ++ +A  +E  +  E +P   +G+NA   +QY+++IA+    ++G    F  +
Sbjct: 223 PQERVIEIMLDAVEIEKEFVSEALPVSLIGMNADLMKQYIEYIADFWLERLGCPKQFG-S 281

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPF +M E+I L  + NFFE RV EYQ+   + 
Sbjct: 282 ANPFDFM-ELISLPGKTNFFEKRVGEYQKAGVMS 314


>gi|74025550|ref|XP_829341.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
 gi|70834727|gb|EAN80229.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
 gi|261335315|emb|CBH18309.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei gambiense DAL972]
          Length = 337

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 91/333 (27%), Positives = 158/333 (47%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+KY   W+KY  A ++ W   E+ + +D+  W+    L D ER 
Sbjct: 16  EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  +
Sbjct: 73  FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   L +  R +P I  KA WA+++  + +S             F   L  F  V E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVAFAAV-E 178

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +  +       +  K  
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKY------IVNKLP 232

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + +   ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M  +I L+ + NFFE +V EYQ+   + 
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|327403795|ref|YP_004344633.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM
           16823]
 gi|327319303|gb|AEA43795.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM
           16823]
          Length = 324

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 157/335 (46%), Gaps = 28/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
            + + +L+   +   L P+++   W  Y  A  + W   E+ +  DL  W++   L+DDE
Sbjct: 2   ANAEPILSENKNRFVLFPIQHEDIWSFYKKAEASFWTAEEIDLSPDLIDWET--KLSDDE 59

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  +K  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I + 
Sbjct: 60  RHFVKHVLAFFAASDGIVNENLAEHFLAEVQYTEAKFFYGFQVAMENIHSETYSLLIDTY 119

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D+ E   LFN    +  +  KA+WAL++    S                 +  V +  
Sbjct: 120 IKDQKEKNHLFNALDTIDCVRKKADWALRWIDNGS---------------FAERLVAFAA 164

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   F  I  L +   M G++   + I RDE LH +F   +  +          +
Sbjct: 165 VEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYTKHL------IHQ 218

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++ + ++ +A  +E  +  + +P   +G+NA    QY++F+A+R   ++G   +F  
Sbjct: 219 LSKEQVQEIILDAVEIEKEFVTDALPVKLIGMNADLMAQYIEFVADRLLTELGNPKVFN- 277

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           T NPF +M  +I ++ + NFFE RV EYQ+   + 
Sbjct: 278 TTNPFDFMD-MISIQGKTNFFEKRVAEYQKSGVMS 311


>gi|325119319|emb|CBZ54873.1| hypothetical protein NCLIV_052980 [Neospora caninum Liverpool]
          Length = 392

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 156/339 (46%), Gaps = 29/339 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +    ++ +L A      +LP+++   WE Y     + W   E+ +  D+  W+S   L 
Sbjct: 68  KEKESEEPLLIANPRRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWES---LN 124

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +E+  IK  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I
Sbjct: 125 SNEKHFIKYVLAFFAASDGIVLENLAEKFLSEIQIPEARAFYGFQIAMENIHSETYSLLI 184

Query: 136 TSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
                DE    ELF+    V ++  KA WA  +                   F + L   
Sbjct: 185 DQYIRDEKEKMELFDAVHNVKAVAVKAAWAAMWIN-------------NRNCFAERLVG- 230

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG+ F   F  I  L +   M G+    + I RDE LH +F   + +Q+K + P  
Sbjct: 231 FACVEGILFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHADFACLLYSQLKNKLPD- 289

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
                 +  + M+ EA  +E A+  E +P   +G+N  S  QY++F+A+R    +G+  +
Sbjct: 290 ------KVVQDMVREAVTVERAFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKI 343

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           F +  NPF WM E+I L+ + NFFE RV EYQ+   +  
Sbjct: 344 F-FATNPFDWM-ELISLQGKTNFFEKRVGEYQKAGVMAD 380


>gi|157869457|ref|XP_001683280.1| ribonucleoside-diphosphate reductase small chain [Leishmania major
           strain Friedlin]
 gi|68224164|emb|CAJ04657.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania major strain Friedlin]
          Length = 392

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/352 (26%), Positives = 159/352 (45%), Gaps = 28/352 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A    + P     +  N +++ +         L P++Y   W KY    +  W   E+ +
Sbjct: 52  AAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDL 111

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
            +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q 
Sbjct: 112 GNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQL 168

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  ++ +   D  E   L +  + +P I  KA WA+++  +          
Sbjct: 169 MMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGS---------- 218

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                 F + L  F  V EG++F   F  +  L +   M G+    + I RDE LH +F 
Sbjct: 219 ---SASFQERLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFA 274

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             +       N H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++F
Sbjct: 275 CLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEF 328

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +G E  +  T+ PF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 329 VADRLLVSLGEEKHYHSTQ-PFEFM-EMISLQGKTNFFERKVGEYQKAGVMS 378


>gi|118383611|ref|XP_001024960.1| ribonucleoside-diphosphate reductase, beta subunit family protein
           [Tetrahymena thermophila]
 gi|89306727|gb|EAS04715.1| ribonucleoside-diphosphate reductase, beta subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 376

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/358 (26%), Positives = 165/358 (46%), Gaps = 37/358 (10%)

Query: 4   NTGLSPI--------QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55
            TG++P+        +    +   +D+ +L    +   L P+KY   WE Y     + W 
Sbjct: 32  ATGMNPLPLLKSKNDEGKAPKEGYEDEPLLKDNPNRFVLFPIKYNKVWEMYKKELASFWT 91

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
             E+ +  DL  W+    LTD+ER  IK  L FFA+S+ +V  N+       +  PE R 
Sbjct: 92  ADEIDLYQDLKDWE---RLTDNERHFIKYVLAFFAASDGIVLENLAEQFMCEVQIPEARA 148

Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSP 172
           +   Q   E +HS T+  +I +   DE E   LF   + VP I  KA WAL++     + 
Sbjct: 149 FYGFQIAMENIHSETYSLLIDTYIKDEVEKDYLFKASQNVPVIHKKAQWALKWINNNDN- 207

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                             + +   EG++F   F  I  L + + M G+    + I RDE 
Sbjct: 208 -------------FASRLIAFAAIEGIFFSGSFCAIFWLKKRSLMPGLTFSNELISRDEG 254

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
           LH +F   + + +  +         +++   ++ EA  +E  +  E +P   +G+N+   
Sbjct: 255 LHTDFACLLYSMLNKKL-------TKEEIYEIITEAVEIEKEFISEALPVELIGMNSNMM 307

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +QY++F+A+R    +G+   +  ++NPF WM  +I ++ + NFFE RV EYQ+   + 
Sbjct: 308 KQYLEFVADRLLFALGVPKFYN-SKNPFEWMD-MISIQGKTNFFEKRVGEYQKANVMS 363


>gi|74025552|ref|XP_829342.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
 gi|70834728|gb|EAN80230.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
          Length = 337

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 159/333 (47%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+KY   W+KY  A ++ W   E+ + +D+  W+    L D ER 
Sbjct: 16  EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  +
Sbjct: 73  FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   L +  R +P I  KA WA+++  + +S             F   L  F  V E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVAFAAV-E 178

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +  +       +  K  
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKY------IVNKLP 232

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + +   ++  A L+E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++
Sbjct: 233 RDRVLEIICNAVLIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M  +I L+ + NFFE +V EYQ+   + 
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|195172750|ref|XP_002027159.1| GL20023 [Drosophila persimilis]
 gi|198459455|ref|XP_001361381.2| GA21447 [Drosophila pseudoobscura pseudoobscura]
 gi|194112972|gb|EDW35015.1| GL20023 [Drosophila persimilis]
 gi|198136695|gb|EAL25959.2| GA21447 [Drosophila pseudoobscura pseudoobscura]
          Length = 391

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 157/344 (45%), Gaps = 28/344 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++      +   + +L        + P++Y   W+ Y  A  + W   EV +  D   W 
Sbjct: 60  MEKTGSPFDPSIEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDATDW- 118

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               LTD+ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 119 --ARLTDNERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 176

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   +  E   LFN    +P++  KA+WA+ +  +                  
Sbjct: 177 MYSVLIDTYIREPQERDYLFNAIETMPAVKRKADWAMSWISS-------------KSANF 223

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + + + + 
Sbjct: 224 AERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMYHHLV 283

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   +  +++   ++ +A  +E  +  E +P   +G+N     QY++F+A+R   +
Sbjct: 284 Q-------RPKRERIIEIIRDAVEIEQEFLTEALPVNLIGMNCVLMSQYIEFVADRLLGE 336

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +G+  ++  T+NPF +M E+I L  + NFFE +V EYQ+   + 
Sbjct: 337 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVAEYQRMGVVT 378


>gi|262263187|dbj|BAI48096.1| ribonucleotide reductase M2 [Sus scrofa]
          Length = 355

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/329 (27%), Positives = 153/329 (46%), Gaps = 28/329 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
            +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W++   L  
Sbjct: 48  PSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWET---LKP 104

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I 
Sbjct: 105 EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLID 164

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LFN    +P +  KA+WAL++                 +    +  V +
Sbjct: 165 TYIKDSKEREFLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVAF 211

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +   +        
Sbjct: 212 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL------- 264

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F
Sbjct: 265 HKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVF 324

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTE 342
           +  ENPF +M E I L+ + NFFE RV E
Sbjct: 325 RV-ENPFDFM-ENISLEGKTNFFEKRVGE 351


>gi|44971395|gb|AAS49745.1| RPXV032 [Rabbitpox virus]
          Length = 319

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|41054952|ref|NP_955770.1| ribonucleoside-diphosphate reductase subunit M2 B [Mus musculus]
 gi|81885688|sp|Q6PEE3|RIR2B_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B;
           AltName: Full=TP53-inducible ribonucleotide reductase M2
           B; AltName: Full=p53-inducible ribonucleotide reductase
           small subunit 2-like protein; Short=p53R2
 gi|34786000|gb|AAH58103.1| Ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus]
 gi|74218244|dbj|BAE23760.1| unnamed protein product [Mus musculus]
          Length = 351

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/342 (28%), Positives = 160/342 (46%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +  E  V  +++ +L   S    + P++Y   W  Y  A  + W   EV +  DL  W  
Sbjct: 21  ETEENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHW-- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 79  -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +   LFN    +P +  KA+WAL++                 +    
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA-------------DRKSTFG 184

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +  
Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN 244

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  K  + + R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 245 -------KPSEDRVREIIADAVQIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLGEL 297

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 298 GFSKIF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|22164633|ref|NP_671546.1| EVM028 [Ectromelia virus]
 gi|22123774|gb|AAM92332.1|AF523264_28 EVM028 [Ectromelia virus]
          Length = 319

 Score =  261 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQVTEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++FIA+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFIADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|438946|gb|AAA60776.1| homolog of vaccinia virus CDS F4L (ribonucleotide reductase, small
           chain); putative [Variola major virus]
 gi|94484491|gb|ABF23604.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94484688|gb|ABF23800.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94484886|gb|ABF23997.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109724274|gb|ABG43399.1| ribonucleotide reductase small subunit [Variola virus]
          Length = 333

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 89/337 (26%), Positives = 153/337 (45%), Gaps = 29/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           VN+  + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT 
Sbjct: 11  VNLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I 
Sbjct: 68  DEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLID 127

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LFN    +P +  KA+WA ++    +S                +  + +
Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSASYG--------------ERLIAF 173

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +   +        
Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL------- 226

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               ++  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++
Sbjct: 227 YPPSEETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIKFVADRLISELGFKKIY 286

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             T NPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 287 NVT-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321


>gi|111184227|gb|ABH08147.1| HSPV044 [Horsepox virus]
          Length = 319

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|194474072|ref|NP_001124015.1| ribonucleoside-diphosphate reductase subunit M2 B [Rattus
           norvegicus]
 gi|149066498|gb|EDM16371.1| ribonucleotide reductase M2 B (TP53 inducible) (predicted) [Rattus
           norvegicus]
          Length = 351

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/342 (28%), Positives = 161/342 (47%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +  E  V  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W  
Sbjct: 21  ETKENEVRSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  
Sbjct: 79  -NKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +   LFN    +P +  KA+WAL++                 +    
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA-------------DRKSTFG 184

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +  
Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN 244

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  K  +++   ++ +A  +E  +  E +P G +G+N    +QY++F+A+R   ++
Sbjct: 245 -------KPSEERVMEIIVDAVKIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLGEL 297

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 298 GFSKIF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|90023100|ref|YP_528927.1| amino acid adenylation [Saccharophagus degradans 2-40]
 gi|89952700|gb|ABD82715.1| Class Ia ribonucleoside-diphosphate reductase beta subunit
           [Saccharophagus degradans 2-40]
          Length = 368

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 139/348 (39%), Positives = 196/348 (56%), Gaps = 6/348 (1%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            G +     +  V   DKR++N  +D+NQL P KY WAW+ +++A  NHW P ++ M  D
Sbjct: 27  AGQAATPNAQAPVCASDKRVINGHTDINQLAPFKYPWAWDFFINANKNHWTPLDINMSQD 86

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  +K    LT+ ER M +  L +  +S+ L   NI LA+   ++ PE + Y  RQ +EE
Sbjct: 87  VYDYKH--NLTEAERHMYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEE 144

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+H+ T+Q+ I +LGLD+GE++N YR VP I AK   A +  +++          D    
Sbjct: 145 ALHTWTYQHCIETLGLDQGEIYNRYRVVPEINAKIQMANRRLESILRSDIDLTDPDQLNN 204

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F+     F  VFEG WFY GF+ I +L R   M G AEQ QYIMRDE++H  FGI  ++Q
Sbjct: 205 FILAYIFFAAVFEGCWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDETMHCAFGIQTVSQ 264

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           I IEN    T       +TM  EA   E  YA   + +  +G +A    +  +FIANRR 
Sbjct: 265 IIIEN---CTNIDVDAIKTMWEEADEAEANYARYILREPILGYSANDHIEQFRFIANRRA 321

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            Q+GLE  F   +   PW+ E  +++KEKNFFETRV EYQ    L+WD
Sbjct: 322 RQLGLEEPFPQAKCALPWLDEQANIRKEKNFFETRVIEYQ-AGGLEWD 368


>gi|42544136|ref|NP_056528.2| ribonucleoside-diphosphate reductase subunit M2 B isoform 1 [Homo
           sapiens]
 gi|114621161|ref|XP_001153916.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
           isoform 2 [Pan troglodytes]
 gi|74727333|sp|Q7LG56|RIR2B_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B;
           AltName: Full=TP53-inducible ribonucleotide reductase M2
           B; AltName: Full=p53-inducible ribonucleotide reductase
           small subunit 2-like protein; Short=p53R2
 gi|261278726|pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2
 gi|261278727|pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2
 gi|7229086|dbj|BAA92434.1| ribonucleotide reductase [Homo sapiens]
 gi|7229115|dbj|BAA92493.1| ribonucleotide reductase [Homo sapiens]
 gi|45259569|dbj|BAD12267.1| p53-inducible ribonucleotide reductase small subunit 2 [Homo
           sapiens]
 gi|52545612|emb|CAB70703.2| hypothetical protein [Homo sapiens]
 gi|63055293|gb|AAY29059.1| ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
 gi|80473666|gb|AAI08262.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
 gi|109659128|gb|AAI17497.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
 gi|119612247|gb|EAW91841.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_b [Homo
           sapiens]
 gi|120660296|gb|AAI30629.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
 gi|190689549|gb|ACE86549.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic
           construct]
 gi|190690911|gb|ACE87230.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic
           construct]
 gi|261859014|dbj|BAI46029.1| ribonucleotide reductase M2 B [synthetic construct]
 gi|313882916|gb|ADR82944.1| ribonucleotide reductase M2 B (TP53 inducible) [synthetic
           construct]
          Length = 351

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 98/350 (28%), Positives = 163/350 (46%), Gaps = 28/350 (8%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           +    S     E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV + 
Sbjct: 13  DQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 72

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q  
Sbjct: 73  KDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIL 129

Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E VHS  +  +I +   D  +   LFN    +P +  KA+WAL++              
Sbjct: 130 IENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------------ 177

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
              +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F  
Sbjct: 178 -DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 236

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +   +         K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+
Sbjct: 237 LMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFV 289

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           A+R   ++G   +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 290 ADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|324519017|gb|ADY47264.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum]
          Length = 376

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 100/354 (28%), Positives = 164/354 (46%), Gaps = 28/354 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            N+T     +  +K      + +L    +   + P+KY   W+ Y  A  + W   EV +
Sbjct: 37  ENSTTRKAPEVTDKGDEEVVEPLLANNPNRFVIFPIKYHDIWDFYKRAVASFWTVEEVDL 96

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   W+    L+D ER  I R L FFA+S+ +V  N+V    + +  PE R +   Q 
Sbjct: 97  SKDYQHWE---NLSDGERFFISRVLAFFAASDGIVNENLVERFAQEVQVPEARFFYGFQI 153

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS  +  ++ +   D+ E   LFN   E   I  KA+WAL++             
Sbjct: 154 MIENIHSEMYSKMVETYIRDDNERKKLFNAINEFEFIKKKADWALKWI------------ 201

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D    + + L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F 
Sbjct: 202 ADKQAPYAERLIAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTHSNELISRDEGLHRDFA 260

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + +K        K  +++   ++ EA  +E  Y  E +P G +G+N     QY+++
Sbjct: 261 CLMFSHLKK-------KPNKERIYEIIREAVKIEQEYLTEALPVGLIGMNCELMSQYIEY 313

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +A+    ++    L+   ENPF +M+  I ++ + NFFE RV+EYQ+   L  D
Sbjct: 314 VADHLLTELKCPKLYNM-ENPFDFMAR-ISIEAKTNFFEKRVSEYQKAGVLSTD 365


>gi|146298285|ref|YP_001192876.1| ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae
           UW101]
 gi|146152703|gb|ABQ03557.1| Ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae
           UW101]
          Length = 325

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/334 (27%), Positives = 157/334 (47%), Gaps = 28/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P+K+   WE Y     + W   E+ +  DL  W   N L DDER  
Sbjct: 5   EPILQENKNRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWN--NKLNDDERYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E    ELFN     P+I  K  WAL++ ++ S                 +  + +   EG
Sbjct: 123 EAEKTELFNALEVFPAIAKKGEWALKWIESDS---------------FAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + + N           K  +
Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHLHNHHL------VNKVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ + ++ +A  +E  +  E++P   +G+NA    QY++F+A+R   ++G E ++  + N
Sbjct: 222 ERIKEIIVDALDIERQFVTESLPVSLIGMNAGLMTQYLEFVADRLLVELGCERVYG-SAN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M  +I L+ + NFFE RV EYQ+   +  D
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVAEYQKSGVMNTD 313


>gi|294950175|ref|XP_002786498.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239900790|gb|EER18294.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 350

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/331 (27%), Positives = 151/331 (45%), Gaps = 28/331 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        + P+KY   WE Y     + W   E+ +  DL  W+    L+D++R  
Sbjct: 15  EDLLKENPHRYVMFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWE---NLSDNDRHF 71

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +   D
Sbjct: 72  ISHVLAFFAASDGIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIKD 131

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             +   +F     VPS+  KA WAL +                D  F + L   +   EG
Sbjct: 132 PEQKDKIFRAIETVPSVRKKAEWALSWIN-------------DDNCFAERLIA-FACVEG 177

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L +   M G+    + I RDE LH +F   +       N   +T+   
Sbjct: 178 ILFSGSFCAIYWLKKRGLMPGLTFSNELISRDEGLHADFACLLY------NMLKYTRLPD 231

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++  A  +E  +  E++P   +G+N+    +Y++F+A+R    +G   L+  T N
Sbjct: 232 ERVHEIVRGAVEVERVFISESLPVSLIGMNSQLMCRYIEFVADRLLVALGHPKLYNAT-N 290

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PF WM ++I L+ + NFFE RV EYQ+G  +
Sbjct: 291 PFDWM-KMISLQGKTNFFEKRVGEYQKGGVM 320


>gi|197101489|ref|NP_001125944.1| ribonucleoside-diphosphate reductase subunit M2 B [Pongo abelii]
 gi|75041724|sp|Q5R9G0|RIR2B_PONAB RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B
 gi|55729743|emb|CAH91600.1| hypothetical protein [Pongo abelii]
          Length = 351

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 98/350 (28%), Positives = 163/350 (46%), Gaps = 28/350 (8%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           +    S     E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV + 
Sbjct: 13  DQDERSSSDTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 72

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q  
Sbjct: 73  KDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIL 129

Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E VHS  +  +I +   D  +   LFN    +P +  KA+WAL++              
Sbjct: 130 IENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------------ 177

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
              +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F  
Sbjct: 178 -DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 236

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +   +         K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+
Sbjct: 237 LMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFV 289

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           A+R   ++G   +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 290 ADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|15826569|pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
          Length = 419

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 27/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER
Sbjct: 94  KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 151

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 152 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 211

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WAL++ Q            DAD  F + L   +   
Sbjct: 212 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 258

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   +   +K +        
Sbjct: 259 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 313

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                  ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  
Sbjct: 314 --AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV- 370

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ENPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 371 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 403


>gi|187903099|ref|YP_001883390.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca
           domestica salivary gland hypertrophy virus]
 gi|187384748|gb|ACD03521.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca
           domestica salivary gland hypertrophy virus]
          Length = 343

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/336 (25%), Positives = 156/336 (46%), Gaps = 27/336 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            ++  ++ +L        L P++Y   W  Y  A  + W   EV +  D+  W+    L+
Sbjct: 11  EMDTSNEPLLQENPRRFVLFPIEYEDIWRMYKKAEASFWTVEEVDLSKDMNDWE---RLS 67

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             E+  IK  L FFA+S+ +V  N++    + +   E R +   Q   E VHS  +  +I
Sbjct: 68  SGEQHFIKHVLAFFAASDGIVNENLLERFAQEVQVSEARCFYGFQIAMENVHSEMYSVLI 127

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   +  E   LFN    +P++  KA+WA  +  +                F + L   
Sbjct: 128 DTYIRERAERERLFNAIETIPAVKRKADWAFNWITS------------TTATFGERLLA- 174

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           + V EG++F   FA I  L +   M G+    + I RDE +H +F + +  +  +  P  
Sbjct: 175 FAVVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVLLFKRYLVNRP-- 232

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
                +++   ++ EA  +E  +  + +P   +G+N     QY++F+A+R    +G++ +
Sbjct: 233 ----SEERVGEIVREAVTIEQEFLTDALPVSLIGMNCGLMSQYIEFVADRLLVDLGMKRI 288

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +  T+NPF +M  +I L  + NFFE RV +YQ+   
Sbjct: 289 YN-TKNPFDFMD-MISLDGKTNFFEKRVGDYQRLGV 322


>gi|75076588|sp|Q4R741|RIR2B_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B
 gi|67969468|dbj|BAE01083.1| unnamed protein product [Macaca fascicularis]
          Length = 351

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 97/346 (28%), Positives = 162/346 (46%), Gaps = 28/346 (8%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            S     +  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL 
Sbjct: 17  RSSSDTNDNEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP 76

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E V
Sbjct: 77  HW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENV 133

Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS  +  +I +   D  +   LFN    +P +  KA+WAL++                 +
Sbjct: 134 HSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA-------------DRK 180

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
               +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +  
Sbjct: 181 STFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ 240

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
            +         K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R 
Sbjct: 241 YLVN-------KPSEERVREIIVDAVQIEQEFLTEALPVGLIGMNCILMKQYIEFVADRL 293

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             ++G   +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 294 LVELGFSKIF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|156847978|ref|XP_001646872.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117553|gb|EDO19014.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 400

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 100/343 (29%), Positives = 160/343 (46%), Gaps = 27/343 (7%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +Q  E +    ++ +L A  +   L P++Y   +E Y  A  + W   E+ +  DL  W 
Sbjct: 63  VQRHELKEKETEEPLLVADPNRKILFPIQYPDIYEAYKRAEASFWTAEEIDLSKDLHDWN 122

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N + ++ER  I R L FFA+S+ +V  N+           E + +   Q   E +HS 
Sbjct: 123 --NRMNENERFFISRVLAFFAASDGIVNENLTENFSVEAQILEAKCFYGFQIMIENIHSE 180

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I +   D  E   LFN    +P I  KA WAL++              D++  F 
Sbjct: 181 TYSLLIDTYIKDPKESQYLFNAIETIPQIKEKAEWALRWIN------------DSEALFA 228

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + L   +   EG++F   FA I  L +   M G+    + I RDE LH +F   + + IK
Sbjct: 229 ERLVA-FAAIEGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHIK 287

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            +               ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R    
Sbjct: 288 NKPDP-------AIVEKIVTEAVEIEKRYFTDALPVALLGMNADLMNQYVEFVADRLLVA 340

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            G E +FK  ENPF +M E I L  + NFFE RV++YQ+ + +
Sbjct: 341 FGNEKVFKV-ENPFDFM-ENISLAGKTNFFEKRVSDYQKASVI 381


>gi|224100309|ref|XP_002311826.1| predicted protein [Populus trichocarpa]
 gi|222851646|gb|EEE89193.1| predicted protein [Populus trichocarpa]
          Length = 342

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 91/351 (25%), Positives = 158/351 (45%), Gaps = 33/351 (9%)

Query: 7   LSPIQAGEKRVNVDDK----RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           +  ++ G +   + ++     +L  ++    + P++Y   WE Y  A  + W   EV + 
Sbjct: 1   MGSLRNGTESERIREEDKQEPILKEQNQRFCMFPIRYKELWEMYKKAEASFWTAEEVDLS 60

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+  W+    L+D E+  I   L FFA+S+ +V  N+       +  PE R +   Q  
Sbjct: 61  RDMQQWE---ALSDSEKHFISHVLAFFAASDGIVLENLAARFLYDVQIPEARAFYGFQIA 117

Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +HS  +  ++ +   D  E   LFN    +P +  KA WAL + Q+           
Sbjct: 118 MENIHSEMYSLLLETYIKDSREKHRLFNAIENIPCVAEKAKWALDWIQS----------- 166

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
                   +  V +   EG++F   F  I  L +   M G+    + I RDE LH +F  
Sbjct: 167 ---SMVFAERLVAFACIEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 223

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            + + ++ +          QK   ++ EA  +E  +  E +P   +G+NA     Y++F+
Sbjct: 224 LLYSLLQRQLHW-------QKVYHIVGEAVEIETKFVCEALPCALIGMNATLMGDYIKFV 276

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           A+R    +G +  +   ENPF WM E I L+ + NFFE RV +YQ+ + + 
Sbjct: 277 ADRLLVALGYQKKYNV-ENPFDWM-EFISLQGKANFFERRVGDYQKASVMS 325


>gi|313213932|emb|CBY40745.1| unnamed protein product [Oikopleura dioica]
          Length = 418

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 155/338 (45%), Gaps = 29/338 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
              +   + +L   +    + P++Y   W  Y  A  + W   EV +  D+  WK    L
Sbjct: 87  ADFDPQLEPLLKENNQRFVIFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWK---KL 143

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  IK  L FFA+S+ +V  N+V      +  PE R +   Q   E +HS  +  +
Sbjct: 144 KKEEQFFIKHVLAFFAASDGIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKL 203

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +L  D  E   LFN    +P+I  KA+WAL++    +  S                 +
Sbjct: 204 IENLVHDTKEKMGLFNAIETMPAIKKKADWALKWIGADAPYSVR--------------VI 249

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +      
Sbjct: 250 AFAAVEGIFFSGSFAAIFWLKKRGLMPGVTFSNELISRDEGLHTDFACLMYKHMVQ---- 305

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
              K  Q++   ++ +A  +E  +  + +P   +G+N    + Y++F+A+R   ++    
Sbjct: 306 ---KPSQEQIIAIIRDAVSIEQEFLTDALPVRLIGMNCDLMKTYIEFVADRLLVELDCPK 362

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           ++K  ENPF +M E+I L+ + NFFE +V+EY +   +
Sbjct: 363 IYKV-ENPFDFM-EMISLEGKTNFFEKKVSEYARAGVM 398


>gi|266919|sp|P29883|RIR2_VACCP RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|335710|gb|AAA48294.1| F14 [Vaccinia virus]
          Length = 319

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N +T DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKVTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   +   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFRMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|330994651|ref|ZP_08318574.1| putative ribonucleoside-diphosphate reductase small subunit
           [Gluconacetobacter sp. SXCC-1]
 gi|329758292|gb|EGG74813.1| putative ribonucleoside-diphosphate reductase small subunit
           [Gluconacetobacter sp. SXCC-1]
          Length = 365

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/352 (25%), Positives = 168/352 (47%), Gaps = 21/352 (5%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           ++T ++   A   +  + ++ +L A        P +Y WA++ +L+    HW+P EVP+ 
Sbjct: 28  DSTAMTDTAAPVAQPPM-EQSLLTANP---VYKPFRYPWAYDAWLTQQRVHWLPEEVPLA 83

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
           DD+  W     LT+ ER ++ +   FF  S+  V N  +    +     E    L   + 
Sbjct: 84  DDVKDWH--RTLTESERHLVTQIFRFFTQSDVEVNNCYMKHYSQVFKPTEVLMMLSAFSN 141

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
            E +H   + +++ ++G+ E E ++ + +   +  K ++  Q+            +   +
Sbjct: 142 IETIHIAAYSHLLDTIGMPETE-YSAFLKYKEMKDKYDYMQQF------------SVSDN 188

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            +  + L  F    EG+  +  FA +L+  R NK+ G+ +   + +RDESLH +    + 
Sbjct: 189 YQIARTLAAFGAFTEGLQLFASFAILLNFPRHNKLKGMGQIVSWSVRDESLHCDSMARLF 248

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIAN 301
                ENP +WT   +   R +  +    E A+   +   G   GL+A   ++Y++F+AN
Sbjct: 249 RVFVQENPEIWTDTLRDDIRQICRDIVEHEDAFIDLSFEMGAVEGLDAGQVKRYIRFVAN 308

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
           RR  Q+GL+ ++    NP PW+ E+++  +  NFFE R TEY + +    WD
Sbjct: 309 RRLGQLGLDGIYDIATNPLPWVDEMVNAVEHANFFENRATEYSRASTTGTWD 360


>gi|146090970|ref|XP_001466408.1| ribonucleoside-diphosphate reductase small chain [Leishmania
           infantum JPCM5]
 gi|134070770|emb|CAM69127.1| putative ribonucleoside-diphosphate reductase small chain
           [Leishmania infantum JPCM5]
          Length = 388

 Score =  260 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/340 (26%), Positives = 157/340 (46%), Gaps = 28/340 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +  N +++ +         L P++Y   W KY    +  W   E+ + +D+  W +   
Sbjct: 60  AEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAT--- 116

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q   E +HS T+  
Sbjct: 117 LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSV 176

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           ++ +   D  E   L +  + +P I  KA WA+++  +                F + L 
Sbjct: 177 LLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGS-------------SASFQERLI 223

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
            F  V EG++F   F  +  L +   M G+    + I RDE LH +F   +       N 
Sbjct: 224 GFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------NS 276

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++F+A+R    +G E
Sbjct: 277 HIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEE 336

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ++ T+ PF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 337 KHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 374


>gi|224000239|ref|XP_002289792.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975000|gb|EED93329.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 335

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 91/327 (27%), Positives = 157/327 (48%), Gaps = 28/327 (8%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           +       L P+ Y   W  Y     + W   E+ +  DL+ W     L  DER  I   
Sbjct: 7   DEEGSRFSLFPIAYPDLWSMYKQHVASFWTADEIDLSADLSDWHK--KLNPDERHFISMV 64

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--- 142
           L FFA ++ +V  N+     R ++ PE R +   Q   E++H  T+  +I +   D    
Sbjct: 65  LAFFAGADGIVVENLAERFCREVTVPEARCFYGFQMAMESIHQETYCLLIDTYITDPKVR 124

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
             LF+ +  VPS+  KA+WA +Y  +                F + L  F  V EG++F 
Sbjct: 125 ERLFSAHATVPSVERKASWAQRYIGS-------------KASFAERLVAFAAV-EGIFFS 170

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
             F  I  L +   M G+    + I RDE LH +F   + +++K++         Q++ +
Sbjct: 171 GSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCSFACQLYSKLKLKLS-------QEEIQ 223

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
           T+++EA  +E ++  + +P   +G+N+    QY++F+A+R    +G + ++  ++NPF W
Sbjct: 224 TIINEAVDVEKSFICDALPVSLIGMNSRLMAQYIEFVADRMLTDLGYQAMYG-SKNPFDW 282

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGAEL 349
           M  +I L+ + NFFE RV EYQ+   +
Sbjct: 283 MD-MISLEGKTNFFEKRVGEYQKSGVM 308


>gi|194755279|ref|XP_001959919.1| GF11796 [Drosophila ananassae]
 gi|190621217|gb|EDV36741.1| GF11796 [Drosophila ananassae]
          Length = 393

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 88/342 (25%), Positives = 155/342 (45%), Gaps = 28/342 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++      +   + +L        + P++Y   W+ Y  A  + W   EV +  DL  W 
Sbjct: 62  MEKSATPFDPSLEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L DDER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS 
Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSE 178

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  +   LFN    +P++  KA+WAL +  +                  
Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALAWISS-------------KSANF 225

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +  + +   EG++F   FA I  L +   M G+    + I RDE LH +F + +   + 
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLV 285

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                   K  +++   ++ +A  +E  +  + +P   +G+N     QY++F+A+R   +
Sbjct: 286 Q-------KPRRERIIEIIRDAVDIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +G+  ++  T+NPF +M E+I L  + NFFE +V EYQ+   
Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVGEYQRMGV 378


>gi|113195221|ref|YP_717351.1| ribonucleotide reductase small subunit [Taterapox virus]
 gi|90660497|gb|ABD97610.1| ribonucleotide reductase small subunit [Taterapox virus]
          Length = 319

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|7023557|dbj|BAA92005.1| unnamed protein product [Homo sapiens]
          Length = 351

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 98/350 (28%), Positives = 163/350 (46%), Gaps = 28/350 (8%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           +    S     E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV + 
Sbjct: 13  DQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 72

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q  
Sbjct: 73  KDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIL 129

Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E VHS  +  +I +   D  +   LFN    +P +  KA+WAL++              
Sbjct: 130 IENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------------ 177

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
              +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F  
Sbjct: 178 -DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 236

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +   +         K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+
Sbjct: 237 LMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGVNCILMKQYIEFV 289

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           A+R   ++G   +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 290 ADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|9631087|ref|NP_047757.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
 gi|3822355|gb|AAC70306.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
          Length = 348

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 152/342 (44%), Gaps = 28/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            A E+  +   + +L        + P++Y   W  Y  A  + W   EV +  D + W+ 
Sbjct: 19  PAPERPFDPRAEPLLRENPRRFVIFPIQYPDMWRMYKKAEASFWTVEEVDLSKDTSDWE- 77

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D+ER  IK  L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  
Sbjct: 78  --RLNDNERHFIKHVLAFFAASDGIVNENLVERFAQEVQVAEARCFYGFQIAMENVHSEM 135

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +      E   L N    +P +  KA WAL++                +  F +
Sbjct: 136 YSTLIDTYVRSSEEKLRLLNAIETMPCVKEKAEWALRWIAG------------REAAFGE 183

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   +   +  
Sbjct: 184 RLVAFAAV-EGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFKHLVQ 242

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  +    + R ++ +A  +E  +  E +P   +GLN  +  QY++F+A+R   ++
Sbjct: 243 -------RPSAARVREIVTDAVAIEQRFLTEALPVRLLGLNCETMSQYIEFVADRLLLEL 295

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
                +  T NP  +M+ +I L+ + NFFE +V EYQ+   +
Sbjct: 296 VGAKHYN-TPNPLDFMN-LISLEGKTNFFEKKVGEYQKFGVM 335


>gi|313235850|emb|CBY19835.1| unnamed protein product [Oikopleura dioica]
          Length = 382

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 155/338 (45%), Gaps = 29/338 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
              +   + +L   +    + P++Y   W  Y  A  + W   EV +  D+  WK    L
Sbjct: 51  ADFDPQLEPLLKENNQRFVIFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWK---KL 107

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  IK  L FFA+S+ +V  N+V      +  PE R +   Q   E +HS  +  +
Sbjct: 108 KKEEQFFIKHVLAFFAASDGIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKL 167

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +L  D  E   LFN    +P+I  KA+WAL++    +  S                 +
Sbjct: 168 IENLVHDTKEKMGLFNAIETMPAIKKKADWALKWIGADAPYSVR--------------VI 213

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +      
Sbjct: 214 AFAAVEGIFFSGSFAAIFWLKKRGLMPGVTFSNELISRDEGLHTDFACLMYKHMVQ---- 269

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
              K  Q++   ++ +A  +E  +  + +P   +G+N    + Y++F+A+R   ++    
Sbjct: 270 ---KPSQEQIIAIIRDAVSIEQEFLTDALPVRLIGMNCDLMKTYIEFVADRLLVELDCPK 326

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           ++K  ENPF +M E+I L+ + NFFE +V+EY +   +
Sbjct: 327 IYKV-ENPFDFM-EMISLEGKTNFFEKKVSEYARAGVM 362


>gi|297265423|ref|XP_001091447.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Macaca
           mulatta]
          Length = 704

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 139/335 (41%), Gaps = 58/335 (17%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  +E
Sbjct: 412 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 468

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 469 RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 528

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LFN    +P +  KA+WAL++              D +  + + +  F  V
Sbjct: 529 IKDPKEREFLFNAIETMPCVKKKADWALRWI------------GDKEATYGERVVAFAAV 576

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE                        
Sbjct: 577 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEVSLNQIIGXXXXXXXX-------- 627

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
                                        +G+N    +QY++F+A+R   ++G   +F+ 
Sbjct: 628 -----------------------------IGMNCTLMKQYIEFVADRLMLELGFSKVFRV 658

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 659 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 691


>gi|3220181|gb|AAC23560.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis]
          Length = 354

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 92/352 (26%), Positives = 158/352 (44%), Gaps = 28/352 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A    + P     +  N +++ +         L P++Y   W KY    +  W   E+ +
Sbjct: 14  AAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDL 73

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
            +D+  W     L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q 
Sbjct: 74  GNDMKDW---AALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQL 130

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  ++ +   D  E   L +  + +P I  KA WA+++  +          
Sbjct: 131 MMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWIGS---------- 180

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                 F + L  F  V EG++F   F  +  L +   M G+    + I RDE LH +F 
Sbjct: 181 ---SASFQERLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFA 236

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             +       N H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++F
Sbjct: 237 CLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEF 290

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +G E  +  T+ PF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 291 VADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 340


>gi|66275840|ref|YP_232925.1| ribonucleotide reductase small subunit [Vaccinia virus]
 gi|132629|sp|P11158|RIR2_VACCV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|335624|gb|AAA48244.1| F4L protein [Vaccinia virus]
 gi|335809|gb|AAA88680.1| ribonucleotide reductase (EC 1.17.4.1) small subunit [Vaccinia
           virus]
 gi|29692149|gb|AAO89322.1| ribonucleotide reductase small subunit [Vaccinia virus WR]
          Length = 319

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|885717|gb|AAA69333.1| C8L [Variola virus]
 gi|885826|gb|AAA69439.1| C8L [Variola virus]
 gi|94483878|gb|ABF22994.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94484081|gb|ABF23196.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94485084|gb|ABF24194.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94485286|gb|ABF24395.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94485489|gb|ABF24597.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94485894|gb|ABF25000.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94487109|gb|ABF26209.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94487515|gb|ABF26613.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94487716|gb|ABF26813.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94488123|gb|ABF27218.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94488323|gb|ABF27417.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94488523|gb|ABF27616.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94488724|gb|ABF27816.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94488925|gb|ABF28016.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94489125|gb|ABF28215.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94489324|gb|ABF28413.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94489527|gb|ABF28615.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94489726|gb|ABF28813.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94490135|gb|ABF29220.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109724070|gb|ABG43196.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109724681|gb|ABG43804.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109724885|gb|ABG44007.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109725088|gb|ABG44209.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109725293|gb|ABG44413.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109725496|gb|ABG44615.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109725700|gb|ABG44818.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109725903|gb|ABG45020.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109726107|gb|ABG45223.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109726310|gb|ABG45425.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109726513|gb|ABG45627.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635013|gb|ABU91466.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635031|gb|ABU91483.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635049|gb|ABU91500.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635067|gb|ABU91517.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635103|gb|ABU91551.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635121|gb|ABU91568.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635139|gb|ABU91585.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635158|gb|ABU91603.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635176|gb|ABU91620.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635194|gb|ABU91637.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635212|gb|ABU91654.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635230|gb|ABU91671.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635248|gb|ABU91688.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635266|gb|ABU91705.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635284|gb|ABU91722.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635320|gb|ABU91756.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635338|gb|ABU91773.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635356|gb|ABU91790.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635374|gb|ABU91807.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635392|gb|ABU91824.1| ribonucleotide reductase small subunit [Variola virus]
 gi|157739431|gb|ABU91739.1| ribonucleotide reductase small subunit [Variola virus]
          Length = 319

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIKFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|46446983|ref|YP_008348.1| ribonucleoside-diphosphate reductase small chain [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400624|emb|CAF24073.1| probable ribonucleoside-diphosphate reductase small chain
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 323

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 152/332 (45%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   L P+ +   W+ Y  A  + W   E+ +  DL  W     L +DE+  
Sbjct: 5   EPILRENKDRFVLFPINHAEIWQMYKKAEASFWTAEEIDLTSDLLDWD--RKLNNDEKYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS  +  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAVNFMSEVQYPEARCFYGFQIMMENIHSEAYSLLIDTYIKD 122

Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
                 LF     +P I+ KA+WAL++               +   F + L  F  V EG
Sbjct: 123 PTDKNRLFKALETIPCISNKADWALRWI--------------SQGSFSERLVAFAAV-EG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G++   + I RDE LH +F   + +Q+  + P        
Sbjct: 168 IFFSGSFCSIFWLKKRGLMPGLSFANELISRDEGLHCDFACLLYSQLNNKLPL------- 220

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  + ++  A  +E  +  + +P   +G+NA    QY++F+A+R    +G   L+    N
Sbjct: 221 ETLQAIISHAVAIEKEFVQDALPVRLIGMNATLMCQYIEFVADRLLVALGSPKLYNVD-N 279

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M  +I +  + NFFE RV+EYQ+   + 
Sbjct: 280 PFDFMD-LISMPGKTNFFERRVSEYQKSGVMS 310


>gi|313675915|ref|YP_004053911.1| ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126]
 gi|312942613|gb|ADR21803.1| Ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126]
          Length = 331

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 90/334 (26%), Positives = 155/334 (46%), Gaps = 29/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L    D   L P+++   WE Y  A  + W   E+ +  D   W+    LT+ E 
Sbjct: 8   QDEPILKENKDRFVLFPIQHKDIWEFYKMAEASFWTAEEIDLSQDQKDWE---NLTEGET 64

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             IK  L FFA+S+ +V  N+       +   E + +   Q   E VHS T+  +I +  
Sbjct: 65  HFIKHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGFQIAMENVHSETYSLLIDTYV 124

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +  +  KA+WAL++    +                 +  + +   
Sbjct: 125 KDNKEKDKLFNAIDTMDCVKKKADWALRWIDEGN---------------YAERLIAFAAV 169

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE LH +F   +       N HL  K 
Sbjct: 170 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY------NDHLVNKL 223

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            ++K   ++ +A  +E  +  +++P   +G+NA    QY++F+A+R   ++  + ++  +
Sbjct: 224 SKEKVTAIITDAVEIEKEFVTDSLPVKLIGMNADLMCQYIEFVADRLLQELRCDKVYG-S 282

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPF +M E+I L+ + NFFE RV +YQ+   +K
Sbjct: 283 SNPFDFM-EMISLQGKTNFFEKRVGDYQKAGVMK 315


>gi|3914644|sp|O46310|RIR2_LEIAM RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
           AltName: Full=Ribonucleotide reductase M2 subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|2828563|gb|AAC08302.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis]
          Length = 345

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 93/352 (26%), Positives = 159/352 (45%), Gaps = 28/352 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A    + P     +  N +++ +         L P++Y   W KY    +  W   E+ +
Sbjct: 5   AAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDL 64

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
            +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q 
Sbjct: 65  GNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQL 121

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  ++ +   D  E   L +  + +P I  KA W +++  +          
Sbjct: 122 MMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWPVRWIGS---------- 171

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                 F Q L  F  V EG++F   F  +  L +   M G+    + I RDE LH +F 
Sbjct: 172 ---SASFQQRLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFA 227

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             +       N H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++F
Sbjct: 228 CLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEF 281

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +G E  ++ T+ PF +M E+I L+ + NFFE RV EYQ+   + 
Sbjct: 282 VADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMS 331


>gi|91081999|ref|XP_969259.1| PREDICTED: similar to AGAP006818-PA [Tribolium castaneum]
 gi|270007377|gb|EFA03825.1| hypothetical protein TcasGA2_TC013940 [Tribolium castaneum]
          Length = 374

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 90/336 (26%), Positives = 158/336 (47%), Gaps = 27/336 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
             + + + +L        + P++Y   W+KY  A  + W   EV +  DL  WK  N L 
Sbjct: 49  EFDPELEPLLQENPRRFVVFPIQYPDIWDKYKQAEASFWTTEEVDLSKDLDDWK--NKLN 106

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I
Sbjct: 107 SDERYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAIENIHSEMYSMLI 166

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   +  E   LFN    +P +  KA+WAL +  +                   +  V 
Sbjct: 167 ETYISEPQEKEFLFNAIETLPCVKKKADWALLWINS-------------KNATFGERIVA 213

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L + N M G+    + I RDE LH +F   + + +       
Sbjct: 214 FAAVEGIFFSGSFASIFWLKKRNLMPGLTFSNELISRDEGLHCDFACLMFSHLVQ----- 268

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             K  +++ ++++ +A  +E  +  E +P   +G+N     QY++F+A+R   ++G E +
Sbjct: 269 --KPSKERIQSIIQDAVKIEKEFLTEALPVSMIGMNCALMCQYIEFVADRLLGELGCEKI 326

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +  ++NPF +M+ +I  + + NFFE +V EYQ+   
Sbjct: 327 YN-SQNPFDFMT-IISNEGKTNFFEKKVGEYQKSGV 360


>gi|221480670|gb|EEE19110.1| ribonucleotide-diphosphate reductase, small subunit, putative
           [Toxoplasma gondii GT1]
          Length = 391

 Score =  259 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 95/332 (28%), Positives = 154/332 (46%), Gaps = 29/332 (8%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
            +L A      +LP+++   WE Y     + W   E+ +  D+  W++   L ++E+  I
Sbjct: 74  PLLMANPHRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFI 130

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
           K  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I     DE
Sbjct: 131 KYVLAFFAASDGIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDE 190

Query: 143 GE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            E   LF+    V ++  KA WA  +                   F + L   +   EG+
Sbjct: 191 EEKLQLFDAVHNVKAVAVKAAWAAMWIN-------------NRNCFAERLVG-FACVEGI 236

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            F   F  I  L +   M G+    + I RDE LH +F   + +Q+K + P        +
Sbjct: 237 LFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHADFACLLYSQLKHKLPD-------K 289

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
             + M+ EA  +E A+  E +P   +G+N  S  QY++F+A+R    +G+  +F +  NP
Sbjct: 290 VVQDMVREAVTVERAFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKIF-FATNP 348

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           F WM E+I L+ + NFFE RV EYQ+   +  
Sbjct: 349 FDWM-ELISLQGKTNFFEKRVGEYQKAGVMAD 379


>gi|237845387|ref|XP_002371991.1| ribonucleotide-diphosphate reductase, small subunit, putative
           [Toxoplasma gondii ME49]
 gi|211969655|gb|EEB04851.1| ribonucleotide-diphosphate reductase, small subunit, putative
           [Toxoplasma gondii ME49]
 gi|221501644|gb|EEE27410.1| ribonucleotide-diphosphate reductase, small subunit, putative
           [Toxoplasma gondii VEG]
          Length = 391

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 95/332 (28%), Positives = 154/332 (46%), Gaps = 29/332 (8%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
            +L A      +LP+++   WE Y     + W   E+ +  D+  W++   L ++E+  I
Sbjct: 74  PLLMANPHRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFI 130

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
           K  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I     DE
Sbjct: 131 KYVLAFFAASDGIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDE 190

Query: 143 GE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            E   LF+    V ++  KA WA  +                   F + L   +   EG+
Sbjct: 191 EEKLQLFDAVHNVKAVAVKAAWAAMWIN-------------NRNCFAERLVG-FACVEGI 236

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            F   F  I  L +   M G+    + I RDE LH +F   + +Q+K + P        +
Sbjct: 237 LFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHADFACLLYSQLKHKLPD-------K 289

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
             + M+ EA  +E A+  E +P   +G+N  S  QY++F+A+R    +G+  +F +  NP
Sbjct: 290 VVQDMVREAVTVERAFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKIF-FATNP 348

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           F WM E+I L+ + NFFE RV EYQ+   +  
Sbjct: 349 FDWM-ELISLQGKTNFFEKRVGEYQKAGVMAD 379


>gi|19113338|ref|NP_596546.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces
           pombe 972h-]
 gi|9297110|sp|P36603|RIR2_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|3378511|emb|CAA20100.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces
           pombe]
          Length = 391

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 95/339 (28%), Positives = 154/339 (45%), Gaps = 27/339 (7%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K+ +  D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L
Sbjct: 59  KKEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWD--NKL 116

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             DER  I   L +FA+S+ +V  N++      +  PE R     Q   E +HS T+  +
Sbjct: 117 NADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLL 176

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           + +   +  E    F+    + SI AKA WAL++              D D  +   L  
Sbjct: 177 LDTYIREPKEKQRHFDAILTMGSIKAKAKWALRWIN------------DEDSTYAIRLVA 224

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + +K     
Sbjct: 225 FAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLMFSHLK----- 278

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
              +  ++    ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G + 
Sbjct: 279 --HRPGRKVVEAIIVEAVDIEKEYFTDALPVSLLGMNKDLMCQYIEFVADRLLVALGNDK 336

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            +  T NPF +M E I L  + NFFE +V++YQ    + 
Sbjct: 337 YYNVT-NPFDFM-ENISLAGKTNFFEKKVSDYQIAGVMS 373


>gi|74025548|ref|XP_829340.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
 gi|70834726|gb|EAN80228.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
          Length = 337

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 156/333 (46%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+KY   W+KY  A ++ W   E+ + +D+  W+    L D ER 
Sbjct: 16  EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E +H  T+  +I +  +
Sbjct: 73  FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHCETYSVLIDTYVV 132

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   L +  R +P I  KA WA+++  + +S             F   L  F  V E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVAFAAV-E 178

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +  +       +  K  
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKY------IVNKLP 232

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + +   ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +     ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHCN-SK 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M  +I L+ + NFFE +V EYQ+   + 
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|291388369|ref|XP_002710634.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like
           [Oryctolagus cuniculus]
          Length = 339

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 99/339 (29%), Positives = 160/339 (47%), Gaps = 28/339 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
               N D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 12  SPDTNEDEEPLLKKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NR 68

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 69  LTSDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 128

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++                 +    +  
Sbjct: 129 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA-------------DRKSTFGERV 175

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +     
Sbjct: 176 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 232

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 233 ----KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLMELGFS 288

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 289 KVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 325


>gi|885759|gb|AAA69374.1| E4L [Variola virus]
 gi|5830589|emb|CAB54628.1| E4L protein [Variola minor virus]
 gi|94483674|gb|ABF22791.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94484287|gb|ABF23401.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94485692|gb|ABF24799.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94486095|gb|ABF25200.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94486298|gb|ABF25402.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94486501|gb|ABF25604.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94486703|gb|ABF25805.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94486906|gb|ABF26007.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94487312|gb|ABF26411.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94487921|gb|ABF27017.1| ribonucleotide reductase small subunit [Variola virus]
 gi|94489931|gb|ABF29017.1| ribonucleotide reductase small subunit [Variola virus]
 gi|109724476|gb|ABG43600.1| ribonucleotide reductase small subunit [Variola virus]
 gi|156635085|gb|ABU91534.1| ribonucleotide reductase small subunit [Variola virus]
          Length = 319

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|297449|emb|CAA46231.1| ribonucleotide reductase, small subunit [Schizosaccharomyces pombe]
 gi|447147|prf||1913428B ribonucleotide reductase:SUBUNIT=small
          Length = 391

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 95/339 (28%), Positives = 155/339 (45%), Gaps = 27/339 (7%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K+ +  D+ +L        L P+KY   W+ Y  A  + W   E+ +  DL  W   N L
Sbjct: 59  KKEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWD--NKL 116

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             DER  I   L +FA+S+ +V  N++      +  PE R     Q   E +HS T+  +
Sbjct: 117 NADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLL 176

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           + +   +  E    F+    + SI AKA WAL++              D D  +   L  
Sbjct: 177 LDTYIREPKEKQRHFDAILTMGSIKAKAKWALRWIN------------DEDSTYAIRLVA 224

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + +K     
Sbjct: 225 FAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLMFSHLK----- 278

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
              +  ++  + ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G + 
Sbjct: 279 --HRPGRKLLKPIIVEAVDIEKEYFTDALPVSLLGMNKDLMCQYIEFVADRLLVALGNDK 336

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            +  T NPF +M E I L  + NFFE +V++YQ    + 
Sbjct: 337 YYNVT-NPFDFM-ENISLAGKTNFFEKKVSDYQIAGVMS 373


>gi|1808636|emb|CAA64118.1| G4L protein [Cowpox virus]
          Length = 319

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L + + M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRDLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  ++++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVKSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|17974949|ref|NP_536463.1| C10L [Monkeypox virus Zaire-96-I-16]
 gi|17529816|gb|AAL40494.1|AF380138_36 C10L [Monkeypox virus Zaire-96-I-16]
 gi|51342196|gb|AAU01240.1| MPXV-WRAIR030 [Monkeypox virus]
 gi|58220500|gb|AAW67788.1| MPXV-SL-030 [Monkeypox virus]
 gi|59858836|gb|AAX09131.1| MPXV-COP-030 [Monkeypox virus]
 gi|68448710|gb|AAY96833.1| ribonucleotide reductase small subunit [Monkeypox virus]
 gi|68448912|gb|AAY97034.1| ribonucleotide reductase small subunit [Monkeypox virus]
 gi|68449113|gb|AAY97234.1| ribonucleotide reductase small subunit [Monkeypox virus]
 gi|68449313|gb|AAY97433.1| ribonucleotide reductase small subunit [Monkeypox virus]
 gi|68449512|gb|AAY97631.1| ribonucleotide reductase small subunit [Monkeypox virus]
 gi|300872658|gb|ADK39060.1| ribonucleotide reductase small subunit [Monkeypox virus]
          Length = 319

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 147/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R ++  A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRFIITNAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|327269406|ref|XP_003219485.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           [Anolis carolinensis]
          Length = 414

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 95/339 (28%), Positives = 158/339 (46%), Gaps = 28/339 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  +  +++ +L        + P+ Y   W+ Y  A  + W   EV +  D   W   N 
Sbjct: 87  ENGLKSNEEPLLRKNPRRFVIFPIHYPDIWKMYKKAQASFWTAEEVDLSKDFPHW---NK 143

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 144 LKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 203

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  E   LFN    +P +  KA+WAL++ +               +    +  
Sbjct: 204 LIDTYIKDPEERDFLFNAIETMPCVKKKADWALRWIR-------------DRKATFGERV 250

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +     
Sbjct: 251 VAFASVEGIFFSGAFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 307

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 308 ----KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLLELGFS 363

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 364 KVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 400


>gi|132628|sp|P20493|RIR2_VACCC RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|335366|gb|AAA48018.1| putative F4L [Vaccinia virus Copenhagen]
          Length = 319

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|8101697|gb|AAF72618.1|AF252539_2 ribonucleotide reductase small subunit M2 [Leishmania amazonensis]
          Length = 345

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 93/352 (26%), Positives = 160/352 (45%), Gaps = 28/352 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           A    + P     +  N +++ +         L P++Y   W KY    +  W   E+ +
Sbjct: 5   AAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDL 64

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
            +D+  W +   L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q 
Sbjct: 65  GNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQL 121

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E +HS T+  ++ +   D  E   L +  + +P I  KA WA+++  +          
Sbjct: 122 MMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGS---------- 171

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                 F + L  F  V EG++F   F  +  L +   M G+    + I RDE LH +F 
Sbjct: 172 ---SASFQERLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFA 227

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             +       N H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++F
Sbjct: 228 CLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEF 281

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +A+R    +G E  ++ T+ PF +M E+I L+ + NFFE RV EYQ+   + 
Sbjct: 282 VADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMS 331


>gi|4836362|gb|AAD30422.1|AF117061_1 ribonucleotide reductase R2 subunit [Aedes albopictus]
          Length = 398

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 160/352 (45%), Gaps = 28/352 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +A N   +  +  +   +   + +L        + P++Y   W+ Y  A  + W   EV 
Sbjct: 58  LAKNEMSAAHKREQTPFDPSIEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVD 117

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  DLA W+    L   E+  I   L FFA+S+ +V  N+V    + +   E R +   Q
Sbjct: 118 LSKDLADWE---KLKSGEKHFISHVLAFFAASDGIVNVNLVERFSQEVQVTEARCFYGFQ 174

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E VHS  +  +I +   D  E   LFN    +P +  KA+WAL +  +         
Sbjct: 175 IAMENVHSEMYSLLIDTYIRDSKEREYLFNAIDNLPCVKKKADWALNWISS--------- 225

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                Q    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 226 ----KQANFGERVVAFAAVEGIFFSGTFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 281

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +   +         K  Q++   ++ EA L+E  +  + +P   +G+N     QY++
Sbjct: 282 ACLMFKYLVQ-------KPSQERVIEIIREAVLIEQEFLTKALPVDLLGMNCELMSQYIE 334

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           F A+R   ++G++ ++  T+NPF +M E I L+ + NFFE +V EYQ+   +
Sbjct: 335 FEADRLLLELGIDKIYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 384


>gi|840719|emb|CAA54549.1| ribonucleotide reductase R2 [Arabidopsis thaliana]
          Length = 340

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 158/334 (47%), Gaps = 30/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +L A++    + P++Y   WE Y  A  + W   EV +  D+  W+    LTD E+
Sbjct: 17  SEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWE---ALTDSEK 73

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS  +  ++ +  
Sbjct: 74  HFISHILAFFAASDGIVLENLA-RFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFI 132

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I+ KA W L + Q+                F   L   +   
Sbjct: 133 KDSKEKDRLFNAIETIPCISKKAKWCLDWIQS-------------PMSFAVRLVA-FACA 178

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+    + I RDE LH +F   +I+ +++  P      
Sbjct: 179 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLISLLQLHVPL----- 233

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             +K   ++HEA  +E  +  + +P   +G+N+    QY+QF+A+R    +G E  +K  
Sbjct: 234 --EKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADRLLVTLGCERTYK-A 290

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ENPF WM E I L+ + NFFE RV EYQ+ + + 
Sbjct: 291 ENPFDWM-EFISLQGKTNFFEKRVGEYQKASVMS 323


>gi|320585888|gb|EFW98567.1| ribonucleotide reductase small subunit [Grosmannia clavigera
           kw1407]
          Length = 378

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 102/344 (29%), Positives = 161/344 (46%), Gaps = 32/344 (9%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            NNT +S I+A E      ++ +L   +    L P+KY   W+ Y     + W   E+ +
Sbjct: 46  ENNTAVSAIKAAEA-----EEPLLKENAQRFVLFPIKYHEIWQMYKKHEASFWTAEEIDL 100

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             DL  W   N L DDER  +   L FFA+S+ +V  N+V      +  PE R +   Q 
Sbjct: 101 SKDLHDWN--NRLNDDERFFVSHILAFFAASDGIVNENLVERFSAEVQVPEARCFYGFQI 158

Query: 122 FEEAVHSHTFQYIITSLGL---DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS T+  +I +          LFN    +P I  KA+WAL++             
Sbjct: 159 MMENVHSETYSLLIDTYIKDTAQRTHLFNAIDTIPCIRKKADWALKWI------------ 206

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
            D +  F Q L  F  V EG++F   F+ I  L +   M G+    + I RDE LH +F 
Sbjct: 207 SDRESTFAQRLVAFAAV-EGIFFSGAFSSIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 265

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             + + +K        +  +Q    ++ +A  +E  +  E +P   +G+N+   +QY++F
Sbjct: 266 CLLFSHLKN-------RPSKQLIEEIIVDAVKIEQEFLTEALPCALLGMNSTLMKQYIEF 318

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
           +A+R    +G + ++  + NPF +M E I L  + NFFE RV E
Sbjct: 319 VADRLLVALGNDKVYN-STNPFDFM-ENISLGGKTNFFEKRVPE 360


>gi|37551487|gb|AAQ93139.1| ribonucleotide reductase small subunit [Vaccinia virus]
 gi|38348909|gb|AAR17885.1| ribonucleotide reductase small subunit [Vaccinia virus]
 gi|88900660|gb|ABD57572.1| VACV040 [Vaccinia virus]
 gi|90819703|gb|ABD98513.1| VACV-DUKE-051 [Vaccinia virus]
          Length = 319

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 148/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R ++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRYIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|124010268|ref|ZP_01694921.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla
           marina ATCC 23134]
 gi|123983653|gb|EAY24093.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla
           marina ATCC 23134]
          Length = 330

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 93/336 (27%), Positives = 155/336 (46%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N   + +L +  +   L P++    W+ Y  A  + W   E+ +  DL  W     L DD
Sbjct: 3   NTVSEPLLESVDNRFVLFPIQQNDIWQMYKQAEASFWTAEEIDLAQDLKDWDE--KLNDD 60

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  I   L FFA+S+ +V  N+ +     + +PE R +   Q   E +H+ T+  +I +
Sbjct: 61  ERHFITHVLAFFAASDGIVNENLAVNFLEEVKSPEARCFYGFQVAIENIHAETYSLLIDT 120

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    VP +  KA WAL++                   F + L  F  
Sbjct: 121 YIKDADEKHRLFNALETVPCVKKKAEWALRWID--------------KGSFAERLIAFAA 166

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           V EG++F   F  I  L +   M G++   + I RDE LH +F   +       N ++  
Sbjct: 167 V-EGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLY------NSYIKN 219

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K   +   +++  A  +E  +  + +P   +G+N+    +Y++F+A+R   ++G E  + 
Sbjct: 220 KLPNETVVSIIKNAVEIEKEFVTDALPVKLIGMNSDLMSEYIEFVADRLLVELGCEKQYN 279

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            T NPF +M E+I L+ + NFFE RV+EY +     
Sbjct: 280 -TANPFDFM-EMISLEGKTNFFEKRVSEYSKAGVAN 313


>gi|302682638|ref|XP_003031000.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8]
 gi|300104692|gb|EFI96097.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8]
          Length = 362

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/341 (26%), Positives = 153/341 (44%), Gaps = 27/341 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             G+      ++ +L        L P++Y   W  Y     + W   E+ +  DL  W+ 
Sbjct: 32  YVGDVDCPEHEEPLLKDSISRFVLFPIQYHEIWAMYKKEEASFWTAEEMDLSKDLHDWEE 91

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
           +  + D+ER  I   L FFA+S+ +V  N++      +  PE R +   Q   E VHS T
Sbjct: 92  R--MNDNERHFISHVLAFFAASDGIVNENLLTRFCGEVKVPEARCFYGFQIMMENVHSET 149

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  +   L N    +P +  KA WAL++              D    F  
Sbjct: 150 YSLLIDTYIRDPAQRTFLLNAVETIPCVRKKAEWALRWI------------ADRRSSFAI 197

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L  F  V EG++F   FA I  L +   M G+    + I RDE +H +F   ++     
Sbjct: 198 RLVAFSAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELITRDEGMHTDFACLLLTH--- 253

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
               +  +   +    ++ EA  +E  +  + +P   +G+NA    QY++F+A+R    +
Sbjct: 254 ----MRRRPHPEVIEMIIKEAVAIEKEFLTDALPVSLIGMNADLMCQYIEFVADRLLVAL 309

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           G + ++  T NPF +M  +I L+ + NFFE RV++Y+  A 
Sbjct: 310 GNDKVWNAT-NPFDFMD-MISLQGKTNFFEKRVSDYKIAAV 348


>gi|71024571|ref|XP_762515.1| hypothetical protein UM06368.1 [Ustilago maydis 521]
 gi|46101992|gb|EAK87225.1| hypothetical protein UM06368.1 [Ustilago maydis 521]
          Length = 424

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 147/321 (45%), Gaps = 27/321 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+++   W+ Y  A  + W   E+ +  DL  W   N L D+ER  I   L FFA
Sbjct: 103 RFVLFPIRFHEIWQMYKKAEASFWTAEEIDLSKDLHDWD--NKLNDNERHFISHVLAFFA 160

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
           +S+ +V  N+V      +   E R +   Q   E +HS T+  +I +   +  +   LF+
Sbjct: 161 ASDGIVNENLVERFSSEVQAAEARCFYGFQIMMENIHSETYSLLIDTYIREPEQREYLFD 220

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
               +P +  KA+WAL++              D    F + L  F  V EG++F   FA 
Sbjct: 221 AVETIPVVKQKADWALRWI------------SDKRATFAERLVAFAAV-EGIFFSGSFAS 267

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  L +   M G+    + I RDE LH +F   + + ++        +        ++ E
Sbjct: 268 IFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLRR-------RAHPDTVLKIITE 320

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E A+  E++P   +G+N+    QY++++A+R    +G    +  +  PF +M+  I
Sbjct: 321 AVEIEKAFLCESIPVALIGMNSKLMCQYIEYVADRLLVSLGNPVHYG-STCPFDFMT-NI 378

Query: 328 DLKKEKNFFETRVTEYQQGAE 348
            L+ + NFFE +V EY +   
Sbjct: 379 SLEGKTNFFEKKVAEYAKAGV 399


>gi|323098642|gb|ADX22879.1| ribonucleotide reductase small subunit [Monkeypox virus]
          Length = 319

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/332 (25%), Positives = 146/332 (43%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FF +S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFXASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++    +                 +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAGXG--------------ERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R ++  A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRFIITNAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|145537171|ref|XP_001454302.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422057|emb|CAK86905.1| unnamed protein product [Paramecium tetraurelia]
          Length = 507

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/351 (26%), Positives = 158/351 (45%), Gaps = 31/351 (8%)

Query: 5   TGLSPIQAGEKRVNVD--DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           T LS +Q  +  V  +  D+ +L    +   L P+KY   W  Y     + W   E+ + 
Sbjct: 170 TPLSNLQTSQPVVQQNECDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLY 229

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  W+    LT DE+  IK  L FFA+S+ +V  N+       +  PE R +   Q  
Sbjct: 230 QDLKDWE---KLTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIA 286

Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +HS T+  +I +   DE E   L +    VP I  KA WA+++     S        
Sbjct: 287 MENIHSETYSLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKWINNNDS-------- 338

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
                   +  + +   EG++F   F  I  + + + M G+    + I RDE LH +F  
Sbjct: 339 ------FAERLIAFAAVEGIFFSGSFCAIFWIKKRSLMPGLTFSNELISRDEGLHTDFAC 392

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +   +  +       E       ++  A  +E  +  E +P   +G+N+   +QY++F+
Sbjct: 393 LLYKHMINKLSIQRVHE-------IISSAVEIEKEFISEALPVELIGMNSNLMKQYIEFV 445

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           A+R    +G   ++  ++NPF WM  +I L+ + NFFE RV +YQ+   + 
Sbjct: 446 ADRLIFALGAPKIYN-SKNPFEWMD-MISLQGKTNFFERRVGDYQKAGVMS 494


>gi|73974198|ref|XP_539109.2| PREDICTED: similar to ribonucleotide reductase M2 B (TP53
           inducible) isoform 2 [Canis familiaris]
          Length = 351

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 99/339 (29%), Positives = 160/339 (47%), Gaps = 28/339 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  V  D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 24  ENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 81  LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++ +               +    +  
Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIE-------------DRKSTFGERV 187

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +     
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 244

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 245 ----KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVELGFS 300

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +F   ENPF +M E I L+ + NFFE RV EYQ+ A +
Sbjct: 301 KVF-QAENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 337


>gi|257053403|ref|YP_003131236.1| ribonucleotide-diphosphate reductase subunit beta [Halorhabdus
           utahensis DSM 12940]
 gi|256692166|gb|ACV12503.1| Ribonucleoside-diphosphate reductase [Halorhabdus utahensis DSM
           12940]
          Length = 330

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 164/331 (49%), Positives = 229/331 (69%), Gaps = 4/331 (1%)

Query: 23  RMLN--ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            +++  A  D N++LP+ Y WA E Y +  NN+W+P E+PMQDD+A W   + LTD ER 
Sbjct: 2   PIIDTAAEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVAQWN-GDELTDAERQ 60

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +++ NLGFF+++ESL ANN+VLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y   SLG 
Sbjct: 61  LVEWNLGFFSTAESLTANNLVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGF 120

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +   L+ MY  VPSI  K  + +  T+++  P FT       ++ L+DL  FYV+ EG++
Sbjct: 121 EPEYLYGMYDRVPSIEEKDQFVVDLTRSIDDPEFTIDGDSDVRDLLRDLVGFYVIMEGIF 180

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY GFA +L L R NKMVGI +Q++YIMRDESLH+ FG+D+I+QI+ ENP +WT EF  +
Sbjct: 181 FYAGFAMMLGLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLIDQIRTENPGVWTDEFDSE 240

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  LE  YA E  P+  +G++      Y+++IA+RR  Q+ L   +  TENPF
Sbjct: 241 VIDLIKEAVELEQIYAREACPEEILGMSGSQFADYVEYIADRRLDQLDLPEQYG-TENPF 299

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           PWMSE +DL KEKNFFET+VTEYQ G  L+W
Sbjct: 300 PWMSEQVDLNKEKNFFETQVTEYQSGGSLEW 330


>gi|328700093|ref|XP_001944536.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Acyrthosiphon pisum]
          Length = 361

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/351 (26%), Positives = 156/351 (44%), Gaps = 28/351 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M N      + A     +   + +L        + P+ Y   W  Y     + W   EV 
Sbjct: 18  MTNKNFFESVSAYRANFDATIEPLLKDNPRRFVIFPIIYDDIWAMYKKQEASFWNVEEVN 77

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           ++ DL  W     LTDDER  I   L FFA+S+ +V  N+V    + +   E R +   Q
Sbjct: 78  LKSDLEDW---MKLTDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQ 134

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS  +  +I +   D  E   LFN    +P +  KA+WAL++            
Sbjct: 135 IMMENIHSEMYSLLIDTYIQDPKEKDFLFNAIETMPCVKKKADWALKWI----------- 183

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
             D+   F + L  F  V EG++F   FA +  L +   M G+    + I RDE LH +F
Sbjct: 184 -SDSKATFGERLVAFAAV-EGIFFSGSFAALFWLKKRGLMPGLTFSNELISRDEGLHTDF 241

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +   ++ + P       Q     ++ EA  +E  +    +P   VG++      Y++
Sbjct: 242 ACLLFKHLEQKPP-------QAVITHIICEAVTIEQDFLTNALPVRMVGMSCEKMAVYIE 294

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           F+A+R  +++G   ++  + NPFP+M  +I  + + NFFE RV +YQ+ + 
Sbjct: 295 FVADRLLNELGCPTVY-RSSNPFPFMD-LISQQGKTNFFEKRVGDYQKASV 343


>gi|187607401|ref|NP_001119973.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus (Silurana)
           tropicalis]
 gi|165971068|gb|AAI58191.1| LOC100144925 protein [Xenopus (Silurana) tropicalis]
          Length = 346

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/348 (28%), Positives = 157/348 (45%), Gaps = 31/348 (8%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           TG   +  G      +++  L        + P+ Y   W+ Y  A  + W   EV +  D
Sbjct: 13  TGDKNLTNGHSD---EEEPFLRKNPQRFVIFPIHYPDIWKMYKKAQASFWTAEEVDLSKD 69

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           L  W+    L  +ER  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E
Sbjct: 70  LVHWE---KLKPEERNFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIE 126

Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
            VHS  +  +I +   D      LFN    +P +  KA WAL++              D 
Sbjct: 127 NVHSEMYSLLIETYIKDPRRREFLFNAIETMPCVRKKAQWALRWI------------SDR 174

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
              F + +  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   +
Sbjct: 175 KASFGERVVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLM 233

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
            + +         K  +++   ++  A  +E  +  E +P   +G+N    + Y++F+A+
Sbjct: 234 FHYLVK-------KPTEERVTEIIVNAVRIEQEFLTEALPVSLIGMNCTLMKTYIEFVAD 286

Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           R   ++G    FK  ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 287 RLLVELGCSKAFK-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 332


>gi|15791173|ref|NP_280997.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium
           sp. NRC-1]
 gi|169236929|ref|YP_001690129.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium
           salinarum R1]
 gi|10581791|gb|AAG20477.1| ribonucleoside reductase small chain [Halobacterium sp. NRC-1]
 gi|167727995|emb|CAP14783.1| ribonucleoside-diphosphate reductase beta subunit [Halobacterium
           salinarum R1]
          Length = 331

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 159/327 (48%), Positives = 228/327 (69%), Gaps = 2/327 (0%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           +A  D N++LP+ Y WA E Y     N+W P EV MQ D++ W+  N LTD ER +++ N
Sbjct: 7   DAEHDPNKILPIDYDWAREYYQQGVANNWTPEEVAMQGDISQWQ-GNELTDAERQLVEWN 65

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
           LGFF+++ESL ANNIVLAIY +++ PECRQYLLRQA+EEAVH+ TF Y   SLG D   +
Sbjct: 66  LGFFSTAESLTANNIVLAIYEYVTAPECRQYLLRQAYEEAVHTDTFIYCCDSLGFDPEHM 125

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           + MY  +PSI  K  + +  T+ +   +FT  T D  ++FL+DL  FYV+ EG++FY GF
Sbjct: 126 YGMYDRIPSIAEKDEFVVGLTRAVDDQAFTIDTDDDLRDFLRDLVGFYVIMEGIFFYAGF 185

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A +L+L R  KMVG+ EQ++YIMRDESLHLNFG+D+INQI+ E+P +WT +F+ +  +++
Sbjct: 186 AMMLALKRRGKMVGVGEQFEYIMRDESLHLNFGVDLINQIRDEHPDVWTADFEAEVNSLM 245

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            +A  LE  YA +  P   +G+++     Y++++A+RR  Q+ ++P++  T+NPFPWM+E
Sbjct: 246 RDAVDLEQLYARDACPDDLLGMSSEQFADYVEYVADRRFQQLRMDPVYG-TDNPFPWMTE 304

Query: 326 VIDLKKEKNFFETRVTEYQQGAELKWD 352
            +DL  E NFFE  V+EYQQG  L WD
Sbjct: 305 QVDLNTETNFFERNVSEYQQGGSLDWD 331


>gi|290771185|emb|CAY80753.2| Rnr2p [Saccharomyces cerevisiae EC1118]
          Length = 399

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 27/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER
Sbjct: 74  KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WAL++ Q            DAD  F + L   +   
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   +   +K +        
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 293

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                  ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  
Sbjct: 294 --AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV- 350

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ENPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 351 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|241589542|ref|YP_002979567.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D]
 gi|240868254|gb|ACS65913.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D]
          Length = 328

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 179/311 (57%), Positives = 228/311 (73%), Gaps = 5/311 (1%)

Query: 1   MANNTGLSPI-----QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55
           M  ++    +      A  KRVNV +KR++N  +DVNQL+P KY WAWEKYL+ C NHWM
Sbjct: 1   MDMSSSYDEVAHAHASATAKRVNVAEKRIINGATDVNQLVPFKYKWAWEKYLAGCANHWM 60

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P EV M  D+ALWK  NGLT+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ
Sbjct: 61  PQEVNMARDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQ 120

Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT 175
           YLLRQAFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI  K  + + +  TL+ PSF 
Sbjct: 121 YLLRQAFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFK 180

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
           TGT + D++ L+ L VF  + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH 
Sbjct: 181 TGTPENDRKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHC 240

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
           NFGID+INQIK+ENPHLWT EF+ +   +  +A  LE  YA +TMP+G +GLNA   + Y
Sbjct: 241 NFGIDLINQIKLENPHLWTAEFKVEITELFKQAVDLEYRYAEDTMPRGVLGLNASMFKGY 300

Query: 296 MQFIANRRCHQ 306
           ++FI NRRC  
Sbjct: 301 LRFICNRRCRS 311


>gi|326403282|ref|YP_004283363.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium
           multivorum AIU301]
 gi|325050143|dbj|BAJ80481.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium
           multivorum AIU301]
          Length = 338

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/331 (27%), Positives = 158/331 (47%), Gaps = 20/331 (6%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L          P +Y WA+E +L+    HW+P EVP+ DD+  W     LT  ER ++ 
Sbjct: 22  LLTENP---VYKPFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWH--RNLTPGERNLLT 76

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           +   FF  ++  V N  +    +     E    L   +  E +H   + +++ ++G+ E 
Sbjct: 77  QIFRFFTQADVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEV 136

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E ++ + +   +  K ++  ++            + D+  E  + L  F    EG+  + 
Sbjct: 137 E-YSAFLKYKEMKDKYDYMQEF------------SVDSKHEIAKTLAAFGAFTEGLQLFA 183

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            FA +L+  R NKM G+ +   + +RDESLH N  I +      ENP +WT+E +++   
Sbjct: 184 SFAILLNFPRFNKMKGMGQIVSWSVRDESLHCNSVIKLFRTFVAENPEIWTEELRREIYL 243

Query: 264 MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
                   E A+       G   GL A   ++Y+++IA+RR  Q+GL PLF   +NP PW
Sbjct: 244 CCATIVDHEDAFIDLAFEFGAVEGLTAEEVKRYIRYIADRRLLQLGLNPLFHVDKNPLPW 303

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
           + E+++  +  NFFE R TEY + +    WD
Sbjct: 304 LDEMLNAVEHTNFFENRATEYSKASTAGSWD 334


>gi|299747484|ref|XP_001837064.2| ribonucleotide reductase small subunit [Coprinopsis cinerea
           okayama7#130]
 gi|298407540|gb|EAU84681.2| ribonucleotide reductase small subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 379

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/341 (26%), Positives = 153/341 (44%), Gaps = 28/341 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             GE  +   ++ +L        L P++Y   W  Y  A  + W   E+ +  D+  W  
Sbjct: 44  FVGEVDLPESEEPLLKPSPKRLTLYPIQYPEIWTHYKRAQASFWTAEEIDLSHDMMDW-- 101

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            + LT+ ER  + R L FFASS+ +V  N+V      +  PE R +   Q   E VHS T
Sbjct: 102 -SKLTNAERHFLSRILAFFASSDGIVNENLVERFSSEVQVPEARCFYGFQVMIENVHSET 160

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   D  E   LF     +PSI  KA WAL +            T D    F +
Sbjct: 161 YSLLIDTYIKDPEERDFLFRAIETIPSIQRKAEWALTW------------TSDKSTTFAE 208

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L   + V EG++F   FA I  + +   + G+    + I RDE +H +F   +   ++ 
Sbjct: 209 RLVA-FAVVEGVFFSGSFAAIFWMRKRGLLPGLTFSNELISRDEGMHTDFACLLFAYLRK 267

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                           ++ EA  +E  +  + +P   +G+N+    QY++F+A+R    +
Sbjct: 268 RPHS-------DTILAIVTEAVEIEKEFFSDALPVSLIGMNSSLMNQYIEFVADRLLTSL 320

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           G +  +    NPF +M E+I ++ + NFFE RV++Y +   
Sbjct: 321 GNDKHYHVD-NPFDFM-ELISMEGKANFFEKRVSDYAKANV 359


>gi|148259750|ref|YP_001233877.1| ribonucleotide-diphosphate reductase subunit beta [Acidiphilium
           cryptum JF-5]
 gi|146401431|gb|ABQ29958.1| Ribonucleoside-diphosphate reductase [Acidiphilium cryptum JF-5]
          Length = 338

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 92/331 (27%), Positives = 158/331 (47%), Gaps = 20/331 (6%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L          P +Y WA+E +L+    HW+P EVP+ DD+  W     LT  ER ++ 
Sbjct: 22  LLTENP---VYKPFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWH--RNLTPGERNLLT 76

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           +   FF  ++  V N  +    +     E    L   +  E +H   + +++ ++G+ E 
Sbjct: 77  QIFRFFTQADVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEV 136

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E ++ + +   +  K ++  ++            + D+  E  + L  F    EG+  + 
Sbjct: 137 E-YSAFLKYKEMKDKYDYMQEF------------SVDSKHEIAKTLAAFGAFTEGLQLFA 183

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            FA +L+  R NKM G+ +   + +RDESLH N  I +      ENP +WT+E +++   
Sbjct: 184 SFAILLNFPRFNKMKGMGQIVSWSVRDESLHCNSVIKLFRTFVAENPEIWTEELRREIYL 243

Query: 264 MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
                   E A+       G   GL A   ++Y+++IA+RR  Q+GL PLF   +NP PW
Sbjct: 244 CCATIVDHEDAFIDLAFEFGAVEGLTAEEVKRYIRYIADRRLLQLGLNPLFHVDKNPLPW 303

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
           + E+++  +  NFFE R TEY + +    WD
Sbjct: 304 LDEMLNAVEHTNFFENRATEYSKASTAGSWD 334


>gi|323098445|gb|ADX22683.1| ribonucleotide reductase small subunit [Monkeypox virus]
          Length = 319

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/332 (25%), Positives = 146/332 (43%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FF +S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFXASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R ++  A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRFIITNAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|296227440|ref|XP_002759377.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           isoform 1 [Callithrix jacchus]
          Length = 351

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/350 (28%), Positives = 162/350 (46%), Gaps = 28/350 (8%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           +    S     E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV + 
Sbjct: 13  DQDERSSADTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 72

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            DL  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q  
Sbjct: 73  KDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIL 129

Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E VHS  +  +I +   D  +   LFN    +P +  KA+WAL++              
Sbjct: 130 IENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------------ 177

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
              +    +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F  
Sbjct: 178 -DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 236

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +   +         K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+
Sbjct: 237 LMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFV 289

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           A+R   ++G    F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 290 ADRLLVELGFSKFF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|323347997|gb|EGA82256.1| Rnr2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 399

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 27/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER
Sbjct: 74  KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WAL++ Q            DAD  F + L   +   
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   +   +K +        
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 293

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                  ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  
Sbjct: 294 --AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV- 350

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ENPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 351 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|6322434|ref|NP_012508.1| Rnr2p [Saccharomyces cerevisiae S288c]
 gi|1172946|sp|P09938|RIR2_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 1;
           AltName: Full=Ribonucleotide reductase R2 subunit 1;
           AltName: Full=Ribonucleotide reductase small subunit 1
 gi|52695523|pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
           From Saccharomyces Cerevisiae
 gi|52695524|pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
           From Saccharomyces Cerevisiae
 gi|52695525|pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
           From Saccharomyces Cerevisiae
 gi|52695526|pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
           From Saccharomyces Cerevisiae
 gi|172450|gb|AAA34988.1| ribonucleoside diphosphate reductase small subunit [Saccharomyces
           cerevisiae]
 gi|1008142|emb|CAA89317.1| RNR2 [Saccharomyces cerevisiae]
 gi|285812874|tpg|DAA08772.1| TPA: Rnr2p [Saccharomyces cerevisiae S288c]
          Length = 399

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 27/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER
Sbjct: 74  KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WAL++ Q            DAD  F + L   +   
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   +   +K +        
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 293

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                  ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  
Sbjct: 294 --AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV- 350

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ENPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 351 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|209966751|ref|YP_002299666.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum
           centenum SW]
 gi|209960217|gb|ACJ00854.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodospirillum
           centenum SW]
          Length = 322

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/332 (27%), Positives = 159/332 (47%), Gaps = 20/332 (6%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
            +L          P +Y WA+E +L+    HW+P EVP+ DD+  W+    LT+ ER ++
Sbjct: 4   PLLTPNP---VYKPFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWRQ--KLTEAERNLL 58

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
            +   FF  ++  V N  +    R     E    L   +  E VH   + +++ ++G+ E
Sbjct: 59  TQIFRFFTQADVEVNNCYMRHYSRVFQPTEVCMMLAAFSAMETVHIAAYSHLLDTIGMPE 118

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
            E ++ +     +  K ++   +              D+ ++  + L VF    EG+  +
Sbjct: 119 IE-YSAFLRYKEMKDKYDYMQGF------------NVDSLEDIAKTLAVFGAFTEGLQLF 165

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
             FA +++  R NKM G+ +   + +RDE+LH    I +      ENP +WT+ FQ++  
Sbjct: 166 ASFAILMNFPRFNKMKGMGQIVTWSVRDETLHTLSMIKLFRTFVNENPQVWTEAFQRELT 225

Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
                    E A+       G   G+ A   ++Y+++IA+RR  Q+GLEP+++  +NP P
Sbjct: 226 VCCETIVHHEDAFIDLAFEMGPVEGMTAEDVKRYIRWIADRRLGQLGLEPVYRIEKNPLP 285

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE-LKWD 352
           WM  +++  +  NFFE R TEY + A    WD
Sbjct: 286 WMDAILNGIEHTNFFENRATEYSKAATRGTWD 317


>gi|321263951|ref|XP_003196693.1| ribonucleotide reductase small subunit [Cryptococcus gattii WM276]
 gi|317463170|gb|ADV24906.1| Ribonucleotide reductase small subunit, putative [Cryptococcus
           gattii WM276]
          Length = 430

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/328 (29%), Positives = 153/328 (46%), Gaps = 28/328 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L        L P+KY   W+ Y  A  + W   E+    DL  W   + +T+ ER  I 
Sbjct: 102 ILRESDSRFVLFPIKYNEIWQAYKRAQASFWTAEELDFGHDLIDWH--DRMTEQERFFIL 159

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  NIV      +   E R +   Q+  E VHS T+  +I +   D  
Sbjct: 160 RILAFFAASDGIVGENIVSQFSLEVQIAEARAFYSFQSMIEQVHSETYSLLIETYVRDAQ 219

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF     +P I  KA+WAL+Y                D+   +   V +   EG++
Sbjct: 220 EKDFLFRGMENIPCIKQKADWALKYI--------------TDELPFRTRLVAFACVEGIF 265

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L +   M G+    + I RDE +H +F   + N +K        +    +
Sbjct: 266 FSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHTDFACLLYNHLK-------HRCSTDE 318

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA ++E  +  + +P   +G+NA    QYM+F+A+R    +G   ++  T NPF
Sbjct: 319 VHRIVSEALVIEKQFLTDALPCALIGINAHLMCQYMEFVADRLVVDLGYPKIYNAT-NPF 377

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
            WM E+I L+ + NFFE+RV+ YQ+   
Sbjct: 378 DWM-ELISLQGKANFFESRVSAYQKANV 404


>gi|1710398|sp|P50650|RIR2_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase R2 subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|555613|gb|AAA50170.1| ribonucleotide reductase small subunit [Plasmodium falciparum]
          Length = 349

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/361 (26%), Positives = 173/361 (47%), Gaps = 38/361 (10%)

Query: 1   MANNTGLS--PIQAGEKRV-------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACN 51
           MA+   +S  PI + ++R           ++++LN  SD   L P+ Y   W+ Y  A  
Sbjct: 1   MADVINISRIPIFSKQEREFSDLQKGKEINEKILNKESDRFTLYPILYPDVWDFYKKAEA 60

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           + W   E+ +  DL  ++    L ++E+  IK  L FFA+S+ +V  N+     R +   
Sbjct: 61  SFWTAEEIDLSSDLKDFE---KLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQIT 117

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168
           E +++   Q   E +HS T+  +I +   DE E   LF+    +P++  KA WA ++   
Sbjct: 118 EAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWIND 177

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
            +S                +  V     EG+ F   F  I    + NK+ G+    + I 
Sbjct: 178 TNS--------------FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELIS 223

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           RDE LH +F   + + +  + P       +Q  + ++ EA  +E ++  E++P   +G+N
Sbjct: 224 RDEGLHTDFNCLIYSLLDNKLP-------EQIIQNIVKEAVEVERSFICESLPCDLIGMN 276

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +    QY++F+A+R    +G   +F +++NPF WM  +I L+ + NFFE RV +YQ+   
Sbjct: 277 SRLMSQYIEFVADRLLECLGCSKIF-HSKNPFNWMD-LISLQGKTNFFEKRVADYQKSGV 334

Query: 349 L 349
           +
Sbjct: 335 M 335


>gi|151945057|gb|EDN63308.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae YJM789]
 gi|190409471|gb|EDV12736.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae RM11-1a]
 gi|256271075|gb|EEU06176.1| Rnr2p [Saccharomyces cerevisiae JAY291]
          Length = 399

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 27/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER
Sbjct: 74  KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WAL++ Q            DAD  F + L   +   
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   +   +K +        
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 293

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                  ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  
Sbjct: 294 --AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV- 350

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ENPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 351 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|308809930|ref|XP_003082274.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
           tauri]
 gi|116060742|emb|CAL57220.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
           tauri]
          Length = 382

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/331 (27%), Positives = 148/331 (44%), Gaps = 29/331 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   L P+K+   WE Y  A  + W   EV +  D   W++   L ++E+  
Sbjct: 63  EPLLRDNPDRFCLFPIKHPRVWEMYKKAEASFWTAEEVDLTYDYKDWQT---LNENEKHF 119

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           +   L FFASS+ +V  N+       +  PE R +   Q   E +HS  +  ++ +   D
Sbjct: 120 VSHVLAFFASSDGIVLENLCSRFMSDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKD 179

Query: 142 EG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
                ELF     VP++  KA+WAL +  +             D  F + L   +   EG
Sbjct: 180 PKKKSELFRAIHTVPTVAMKADWALHWIGS-------------DASFPERLVG-FACVEG 225

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   +   ++           +
Sbjct: 226 IFFSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYGMLQN-------PLSE 278

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                ++ +A  +E  +  + +    VG+NA     Y++F+A+R   Q+G   LF    N
Sbjct: 279 ATLHHIVGDAVKIEKEFVCDALSCSLVGMNADMMSTYIEFVADRLLIQLGASKLFNAV-N 337

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PF WM E+I L+ + NFFE RV +YQ+   +
Sbjct: 338 PFDWM-ELISLQGKANFFEHRVDQYQKAGVM 367


>gi|207343947|gb|EDZ71248.1| YJL026Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 399

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 101/334 (30%), Positives = 158/334 (47%), Gaps = 27/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER
Sbjct: 74  KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+S+V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 132 FFISRVLAFFAASDSIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WAL++ Q            DAD  F + L   +   
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   +   +K +        
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 293

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                  ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  
Sbjct: 294 --AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV- 350

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ENPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 351 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|194036959|ref|XP_001925036.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Sus
           scrofa]
          Length = 351

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 157/339 (46%), Gaps = 28/339 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E      ++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 24  ENEAKSSEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NR 80

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 81  LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++                 +    +  
Sbjct: 141 LIDTYIRDPKQREFLFNAIETMPYVKKKADWALRWIA-------------DRKATFGERV 187

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +     
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 244

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               K  + + R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 245 ----KPSEARVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTELGFS 300

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 301 KVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|149721713|ref|XP_001493623.1| PREDICTED: ribonucleotide reductase M2 B (TP53 inducible) [Equus
           caballus]
          Length = 351

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/339 (28%), Positives = 159/339 (46%), Gaps = 28/339 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E     +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 24  ENEAKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 81  LTSDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WALQ+                 +    +  
Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALQWIA-------------DRKSTFGERV 187

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +     
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 244

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G  
Sbjct: 245 ----KPSEERVREIIVNAVEIEQEFLTEALPVDLIGMNCVLMKQYIEFVADRLLVELGFS 300

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 301 KVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|225012154|ref|ZP_03702591.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
           MS024-2A]
 gi|225003709|gb|EEG41682.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
           MS024-2A]
          Length = 325

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/332 (27%), Positives = 154/332 (46%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P+K+   WE Y     + W   E+ +  DL  W +   LT+DE+  
Sbjct: 5   EPILQENENRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNT--KLTEDEKYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LF      P+I  KA+WAL++  + S                 +  + +   EG
Sbjct: 123 DVEKDRLFKAIEVFPAIKKKADWALRWIDSDS---------------FAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + + N           K   
Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHLHNHHL------VNKVPP 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            + + +L +A  +E  +  E++P   +G+NA    QY++F+ +R   ++GLE  F  T N
Sbjct: 222 ARIKEILLDALTIEREFITESLPISLIGMNAKLMTQYLEFVTDRLLQELGLEKEFNVT-N 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M  +I L+ + NFFE RV EYQ+   L 
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGEYQKAGVLN 311


>gi|124808087|ref|XP_001348226.1| ribonucleotide reductase small subunit [Plasmodium falciparum 3D7]
 gi|23497116|gb|AAN36665.1|AE014816_50 ribonucleotide reductase small subunit [Plasmodium falciparum 3D7]
          Length = 349

 Score =  257 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 97/361 (26%), Positives = 173/361 (47%), Gaps = 38/361 (10%)

Query: 1   MANNTGLS--PIQAGEKRV-------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACN 51
           MA+   +S  PI + ++R           ++++LN  SD   L P+ Y   W+ Y  A  
Sbjct: 1   MADVINISRIPIFSKQEREFSDLQKGKEINEKILNKESDRFTLYPILYPDVWDFYKKAEA 60

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           + W   E+ +  DL  ++    L ++E+  IK  L FFA+S+ +V  N+     R +   
Sbjct: 61  SFWTAEEIDLSSDLKDFE---KLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQIT 117

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168
           E +++   Q   E +HS T+  +I +   DE E   LF+    +P++  KA WA ++   
Sbjct: 118 EAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWIND 177

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
            +S                +  V     EG+ F   F  I    + NK+ G+    + I 
Sbjct: 178 TNS--------------FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELIS 223

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           RDE LH +F   + + +  + P       +Q  + ++ EA  +E ++  E++P   +G+N
Sbjct: 224 RDEGLHTDFNCLIYSLLDNKLP-------EQMVQNIVKEAVEVERSFICESLPCDLIGMN 276

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +    QY++F+A+R    +G   +F +++NPF WM  +I L+ + NFFE RV +YQ+   
Sbjct: 277 SRLMSQYIEFVADRLLECLGCSKIF-HSKNPFNWMD-LISLQGKTNFFEKRVADYQKSGV 334

Query: 349 L 349
           +
Sbjct: 335 M 335


>gi|313117005|ref|YP_004038129.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense
           DSM 11551]
 gi|312294957|gb|ADQ68993.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense
           DSM 11551]
          Length = 330

 Score =  257 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 162/330 (49%), Positives = 226/330 (68%), Gaps = 4/330 (1%)

Query: 24  MLNARS--DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +LN  +  D N++LP+ Y WA + Y     N+W+P E+PMQ+D+A W   + L+D E+ +
Sbjct: 3   ILNNDTEHDPNKILPIDYDWARQYYRDGVANNWVPEEIPMQEDIAQWN-GDALSDSEKQL 61

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           ++ NLGFF+++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y   SLG D
Sbjct: 62  VEWNLGFFSTAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFD 121

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
              ++ MY  VPSI  K  + +  T+ L  P FT       ++ L+DL  FYVV EG++F
Sbjct: 122 PEYMYGMYDRVPSIKEKDEFVVDLTRNLDDPDFTVEDTADVRDLLRDLVGFYVVMEGVFF 181

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y GFA +L+L R NKMVGI +Q++YIMRDESLH+ FG+D+INQI+ ENP  WT EF  + 
Sbjct: 182 YAGFAMMLALKRQNKMVGIGQQFEYIMRDESLHVGFGVDLINQIRAENPDAWTDEFGAEV 241

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
           R ++ +A  LE  YA E  P   +G++     +Y++ +A+RR  Q+ L+  +  T+NPFP
Sbjct: 242 RDLIEKAVDLEQIYAREACPDDVLGMSPDQFAEYVEHVADRRLGQLDLDASYG-TDNPFP 300

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           WMSE +DL KEKNFFET+VTEYQ G  L W
Sbjct: 301 WMSEAVDLNKEKNFFETQVTEYQSGGSLDW 330


>gi|323308423|gb|EGA61668.1| Rnr2p [Saccharomyces cerevisiae FostersO]
          Length = 399

 Score =  257 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 27/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER
Sbjct: 74  KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WAL++ Q            DAD  F + L   +   
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   +   +K +        
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 293

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                  ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  
Sbjct: 294 --AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV- 350

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ENPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 351 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|328872436|gb|EGG20803.1| ribonucleotide reductase small subunit [Dictyostelium fasciculatum]
          Length = 335

 Score =  257 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/331 (26%), Positives = 155/331 (46%), Gaps = 28/331 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   L P+KY   W  Y  A  + W   E+ +  D+  W+  N L D+ER 
Sbjct: 6   EEPLLKENKDRFVLFPIKYTDIWNMYKKAEASFWTAEEIDLASDVNEWE--NKLNDNERH 63

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +   
Sbjct: 64  FIKNVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIK 123

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  E   LFN    +P +  KA+WAL++                + +   +  V +   E
Sbjct: 124 NPDEKKVLFNAIETIPCVKKKADWALRWI--------------TNSKSFAERLVAFAAVE 169

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + N++  +         
Sbjct: 170 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYNKLNNKLDV------ 223

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +   +++ +A   E  +  +++P   +G+N+    +Y++F A+R    +G + ++  + 
Sbjct: 224 -KTIESIIRDAVECEKEFVTDSLPVDLIGMNSREMSKYIEFCADRLLVSLGYKKIYN-SA 281

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           NPF WM E+I L ++ NFFE +V+EY +   
Sbjct: 282 NPFDWM-EMISLMRKANFFEGKVSEYAKAGV 311


>gi|126322530|ref|XP_001380256.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 361

 Score =  257 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 93/339 (27%), Positives = 162/339 (47%), Gaps = 28/339 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           +  +   ++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 34  DNGLKSSEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 90

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  +  
Sbjct: 91  LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENIHSEMYSL 150

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WALQ+                 +    +  
Sbjct: 151 LIDTYIKDPQKREFLFNAIETMPCVKRKADWALQWIA-------------DRKSTFGERV 197

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   + + +     
Sbjct: 198 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFHYLVN--- 254

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               K  +++ + ++  A  +E  +  + +P G +G+N+   +QY++F+A+R   ++G  
Sbjct: 255 ----KPSEERVKEIIINAVEIEQEFLTDALPVGLIGINSTLMKQYIEFVADRLLVELGFS 310

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +F  ++NPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 311 KVF-QSDNPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 347


>gi|194673004|ref|XP_607398.4| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos
           taurus]
 gi|297482473|ref|XP_002692807.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Bos
           taurus]
 gi|296480530|gb|DAA22645.1| ribonucleotide reductase M2 polypeptide-like [Bos taurus]
          Length = 351

 Score =  257 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 28/339 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E     D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 24  ENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKKAQASFWTAEEVDLSKDLPHW---NK 80

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  +E+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 81  LKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++                 +    +  
Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA-------------DRKSTFGERV 187

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +     
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 244

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 245 ----KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTELGFS 300

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 301 KVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337


>gi|6969682|gb|AAF33894.1| TF4L [Vaccinia virus Tian Tan]
          Length = 319

 Score =  257 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE L  +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLRCDFACLMFKHLL-------HPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    E Y++F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMETYIEFVADRLISELGFKKIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQQ   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQQMGVMS 307


>gi|289742419|gb|ADD19957.1| ribonucleotide reductase beta subunit [Glossina morsitans
           morsitans]
          Length = 396

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 89/354 (25%), Positives = 157/354 (44%), Gaps = 28/354 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            + T  +       + +   + +L        + P++Y   W+ Y  A  + W   EV +
Sbjct: 57  KDATVTTASDNSVAKFDPSIEPLLKENPKRFVIFPIQYPEIWKMYKKAEASFWTAEEVDL 116

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D+  W   N L+D ER  I   L FFA+S+ +V  N+V    + +   E R +   Q 
Sbjct: 117 SKDMDDW---NRLSDGERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQI 173

Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
             E VHS  +  +I +  +DE E   LFN    +P +  KA WAL +  +          
Sbjct: 174 AMENVHSEMYSLLIETYIMDEKEREYLFNAIETMPLVKKKAEWALAWISS---------- 223

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                    +  + +   EG++F   FA I  L +   M G+    + I RDE LH  F 
Sbjct: 224 ---HSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGIMPGLTFSNEMISRDEGLHCEFA 280

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
           + +   +         K  +++   ++ +A  +E  +  E +P   +G+N+ S  +Y+++
Sbjct: 281 VLMFKHLIQ-------KPSKERILEIITDAVKIEKEFLTEALPVDLIGMNSESMCKYIEY 333

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +A+R   ++ +   +   ENPF +M++ I +  + NFFE RV EYQ+      D
Sbjct: 334 VADRLLLELDVGKYY-LAENPFEFMNK-ISIDGKTNFFEKRVGEYQKIGVSSDD 385


>gi|6525234|gb|AAF15363.1|AF205376_1 ribonucleotide reductase R2 subunit [Plasmodium falciparum]
          Length = 320

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 92/331 (27%), Positives = 161/331 (48%), Gaps = 29/331 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +R+LN  SD   L P+ Y   W+ Y  A  + W   E+ +  DL  ++    L ++E+  
Sbjct: 2   RRILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE---KLNENEKHF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF+    +P++  KA WA ++    +S                +  V     EG
Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWINDTNS--------------FAERIVANACVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I    + NK+ G+    + I RDE LH +F   + + +  + P       +
Sbjct: 165 ILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLP-------E 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           Q  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   +F +++N
Sbjct: 218 QMVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HSKN 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 277 PFNWMD-LISLQGKTNFFEKRVADYQKSGVM 306


>gi|9633651|ref|NP_051729.1| ribonucleotide reductase, small subunit [Myxoma virus]
 gi|6523870|gb|AAF14903.1|AF170726_19 ribonucleotide reductase, small subunit [Myxoma virus]
 gi|301134541|gb|ADK63655.1| M015L [Myxoma virus]
          Length = 322

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 94/334 (28%), Positives = 158/334 (47%), Gaps = 28/334 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           ++D+ +L    D   + P++Y   W  Y  A  + W P EV +  DL  W+    LT DE
Sbjct: 1   MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWRV---LTPDE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I + 
Sbjct: 58  KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            +D  E   LF     +  I  KA W  ++             ++ D  + + L   +  
Sbjct: 118 IIDLQEKEKLFKAIETMDCIKQKAEWVQKWI------------RNKDATYAERLIA-FAS 164

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +  KM G+    + I RDE LH +F   +   +K         
Sbjct: 165 VEGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFKHLK-------HT 217

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++  +++ EA ++E  +  E +P   +G+N     QY++F+A+R   ++G   +F  
Sbjct: 218 PSEERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSA 277

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           T NPF +M E I L+ + NFFE RV++YQ+   +
Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQRMGVV 309


>gi|281340156|gb|EFB15740.1| hypothetical protein PANDA_011632 [Ailuropoda melanoleuca]
          Length = 336

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 98/339 (28%), Positives = 159/339 (46%), Gaps = 28/339 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E     D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 9   ENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 65

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 66  LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 125

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++ +               +    +  
Sbjct: 126 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIE-------------DRKSTFGERV 172

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +     
Sbjct: 173 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 229

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 230 ----KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVELGFS 285

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +F   ENPF +M E I L+ + NFFE RV EYQ+ A +
Sbjct: 286 KVF-QAENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 322


>gi|219110949|ref|XP_002177226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411761|gb|EEC51689.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 409

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/323 (28%), Positives = 151/323 (46%), Gaps = 28/323 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
               L P+++   W  Y     + W   E+ +  DL  W  +  L D+ER  I   L FF
Sbjct: 92  SRFSLFPIEHDDLWGMYKQHVASFWTVDEIDLSADLTDWHER--LNDNERHFISMVLAFF 149

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELF 146
           A ++ +V  N+     R ++ PE R +   Q   E +H  T+  +I S   D      LF
Sbjct: 150 AGADGIVVENLAERFCREVTVPEARAFYGFQMAMEGIHQETYCLLIDSYISDPKDREMLF 209

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
             + +VPS+  KA WA +Y  +             D  F + L  F  V EG++F   F 
Sbjct: 210 AAHTKVPSVEKKARWAQRYIGS-------------DASFAERLVAFAAV-EGIFFSGAFC 255

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I  L +   M G+    + I RDE LH +F   + ++++ +         +     ++ 
Sbjct: 256 SIFWLKKRGLMPGLTFSNELISRDEGLHCSFACQLYSKLERKLS-------ETDMHKLIG 308

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           EA  +E  +  + +P G +G+NA    QY++F+A+R  H +G   L+  ++NPF WM  +
Sbjct: 309 EAVEVEKGFVCDALPVGLIGMNASLMSQYVEFVADRLLHDLGYRTLYG-SKNPFDWMD-M 366

Query: 327 IDLKKEKNFFETRVTEYQQGAEL 349
           I L+ + NFFE RV EYQ+   +
Sbjct: 367 ISLEGKTNFFEKRVGEYQKSGVM 389


>gi|170664480|gb|ACB28637.1| small subunit ribonucleotide reductase [Myxoma virus]
 gi|170664652|gb|ACB28808.1| small subunit ribonucleotide reductase [recombinant virus
           6918VP60-T2]
          Length = 322

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/334 (27%), Positives = 158/334 (47%), Gaps = 28/334 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           ++D+ +L    D   + P++Y   W  Y  A  + W P EV +  DL  W+    LT DE
Sbjct: 1   MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWRV---LTPDE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I + 
Sbjct: 58  KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            ++  E   LF     +  I  KA W  ++             ++ D  + + L   +  
Sbjct: 118 IINLQEKEKLFKAIETMDCIKQKAEWVQKWI------------RNKDATYAERLIA-FAS 164

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +  KM G+    + I RDE LH +F   +   +K         
Sbjct: 165 VEGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFKHLK-------HT 217

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +++  +++ EA ++E  +  E +P   +G+N     QY++F+A+R   ++G   +F  
Sbjct: 218 PSEERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSA 277

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           T NPF +M E I L+ + NFFE RV++YQ+   +
Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQRMGVV 309


>gi|292397811|ref|YP_003517877.1| RR2b [Lymantria xylina MNPV]
 gi|291065528|gb|ADD73846.1| RR2b [Lymantria xylina MNPV]
          Length = 338

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 153/345 (44%), Gaps = 30/345 (8%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           GEK  +   + +L        + P++Y   W  Y  A  + W   EV +  D   W+   
Sbjct: 11  GEKPFDPQAEPLLRENPRRFVIFPIQYSDMWSMYKKAEASFWTVEEVDLSKDTRDWE--- 67

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D+ER  IK  L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  + 
Sbjct: 68  RLNDNERHFIKHVLAFFAASDGIVNENLVERFAQEVQVVEARCFYGFQIAMENVHSEMYS 127

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +I +      E   L N    +P +  KA WAL++  +             +  F + L
Sbjct: 128 TLIDTYVRSSEEKLRLLNAIETMPCVKEKAEWALRWIAS------------KEATFGERL 175

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
             F  V EG++F   FA I  L +   M G+    + I RDE LH +F   +   +    
Sbjct: 176 VAFAAV-EGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVQ-- 232

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                +    + R ++ +A  +E  +  E +P   +GLN  +  QY++F+A+R    +  
Sbjct: 233 -----RPSAARVREIVTDAVAIEQRFLTEALPVRLLGLNCETMSQYIEFVADRLLVDLIG 287

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL--KWD 352
              +  T NP  +M+ +I L+ + NFFE +V EYQ+   +  K D
Sbjct: 288 TKHYN-TANPLDFMT-LISLEGKTNFFEKKVGEYQKFGVMFAKDD 330


>gi|322368525|ref|ZP_08043093.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus
           paucihalophilus DX253]
 gi|320551809|gb|EFW93455.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus
           paucihalophilus DX253]
          Length = 330

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 165/324 (50%), Positives = 225/324 (69%), Gaps = 2/324 (0%)

Query: 28  RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
             D N++LPL Y WA + Y +  NN+W+P E+PMQDD++ W   + L+D ER +I+ NLG
Sbjct: 9   EHDPNKILPLDYDWARDYYEAGVNNNWVPEEIPMQDDISQWN-GDALSDAERQLIEWNLG 67

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147
           FF+++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y   SLG D   L+ 
Sbjct: 68  FFSTAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPDYLYG 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
           MY  VPSI  K  + +  T+ +  P FT  T    +EFL+DL  FYV+ EG++FY GFA 
Sbjct: 128 MYDRVPSIAEKDEFVVDLTRAIDRPDFTIETDADVREFLRDLVGFYVIMEGVFFYAGFAM 187

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +L L R NKMVGI +Q++YI+RDESLH+ FG+D+IN+I+ ENP+ WT  F  +   ++  
Sbjct: 188 MLGLKRQNKMVGIGQQFEYILRDESLHVGFGVDLINEIRAENPNAWTDAFGDEVTDLITN 247

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  LE  YA+E  P   +G++A    +Y++ IA+RR  Q+ L+  +  TENPFPWMSE +
Sbjct: 248 AVELEKIYAYEACPDEILGMSAAQFAEYVEHIADRRLAQLDLDEQYG-TENPFPWMSEQV 306

Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
           DL KEKNFFET+VTEYQ G  L W
Sbjct: 307 DLNKEKNFFETQVTEYQSGGSLDW 330


>gi|86132508|ref|ZP_01051102.1| ribonucleoside-diphosphate reductase small chain [Dokdonia
           donghaensis MED134]
 gi|85817069|gb|EAQ38253.1| ribonucleoside-diphosphate reductase small chain [Dokdonia
           donghaensis MED134]
          Length = 328

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 94/333 (28%), Positives = 157/333 (47%), Gaps = 28/333 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+++   WE Y  +  + W   E+ +  DL  WK    LTDDER  
Sbjct: 5   EPILAENKDRFVIFPIQHDDIWEWYKKSEASFWTAEEIDLHQDLVDWK--GKLTDDERYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LFN     P+I  KA+WAL++  +                F + L  F  V EG
Sbjct: 123 EVEKDKLFNALENFPAIKKKADWALKWIDS--------------PSFAERLIAFAAV-EG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + + N           K  +
Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHLHNHHL------VNKVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++  A  +E  +  E++P   +G+N+    QY++++ +R   ++  E ++  T N
Sbjct: 222 ERITEIIVNALDIEREFITESLPVSLIGMNSNLMTQYLEYVTDRLLTELDCEKVYN-TAN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           PF +M  +I L+ + NFFE RV EYQ+   +K 
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGEYQKAGVVKD 312


>gi|58260834|ref|XP_567827.1| ribonucleotide reductase small subunit [Cryptococcus neoformans
           var. neoformans JEC21]
 gi|134117207|ref|XP_772830.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255448|gb|EAL18183.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229908|gb|AAW46310.1| ribonucleotide reductase small subunit, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 430

 Score =  255 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 98/328 (29%), Positives = 153/328 (46%), Gaps = 28/328 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L        L P+KY   W+ Y  A  + W   E+    DL  W   + +T+ ER  I 
Sbjct: 102 ILRESESRFVLFPIKYNEIWQAYKHAQASFWTAEELDFGHDLIDWH--DRMTEQERFFIL 159

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L FFA+S+ +V  NIV      +   E R +   Q+  E VHS T+  +I +   D  
Sbjct: 160 RILAFFAASDGIVGENIVSQFALEVQIAEARAFYSFQSMIEQVHSETYSLLIETYVRDAQ 219

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E   LF     +P I  KA+WAL+Y                D+   +   V +   EG++
Sbjct: 220 EKDFLFRGMTNIPCIKQKADWALKYI--------------TDELPFRTRLVAFACVEGIF 265

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L +   M G+    + I RDE +H +F   + N +K        +    +
Sbjct: 266 FSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHTDFACLLYNHLK-------HRCSTDE 318

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA ++E  +  + +P   +G+NA    QYM+F+A+R    +G   ++  T NPF
Sbjct: 319 VHHIVSEALVIEKQFLTDALPCALIGINAHLMCQYMEFVADRLVVDLGYPKIYNAT-NPF 377

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
            WM E+I L+ + NFFE+RV+ YQ+   
Sbjct: 378 DWM-ELISLQGKANFFESRVSAYQKANV 404


>gi|126662515|ref|ZP_01733514.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria
           bacterium BAL38]
 gi|126625894|gb|EAZ96583.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria
           bacterium BAL38]
          Length = 325

 Score =  255 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 28/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+K+   WE Y       W   E+ +  DL  W   N L DDE+  
Sbjct: 5   EPILQENKDRFVIFPIKHQDIWEWYKKQEACIWTAEEIDLHTDLNDWN--NKLNDDEKYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +  PE + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYPEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF+     P+I  KA WAL++ ++ S                 +  + +   EG
Sbjct: 123 EVEKNKLFHAIETFPAIKEKAQWALKWIESDS---------------FAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + + +        +  K  +
Sbjct: 168 IFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLHSHH------IVNKVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++ +A  +E  +  E++P   +G+NA    QY++F+ +R   ++G + ++  + N
Sbjct: 222 ERITEIIVDALNIERQFITESLPVSLIGMNATLMTQYLEFVTDRLLVELGCDRVYN-SSN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M  +I L+ + NFFE RV EYQ+   +  D
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVAEYQKAGVMNSD 313


>gi|324509007|gb|ADY43795.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum]
          Length = 337

 Score =  255 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 97/346 (28%), Positives = 153/346 (44%), Gaps = 28/346 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
             I          D+ +L        + P+KY   W  Y +A  + W   E+ +  D A 
Sbjct: 4   GDISMMSATAKNSDEPLLAENPSRFVIFPIKYHDIWAFYKNAVASFWTADEIDLSRDYAD 63

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W+    LTD ER  I R L FFA+S+ +V  N+       +  PE R +   Q   E VH
Sbjct: 64  WE---KLTDGERFFISRVLSFFAASDGIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVH 120

Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S  +  +I +   D  E    F+   +   I  KA+WAL++              D +  
Sbjct: 121 SEMYSKMIEAYIKDPKEQMVHFDAIHQFECIKKKADWALRWID------------DRNSP 168

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F   L  F  V EG+ F   FA I  L +   M G+    + I RDE LH +F   +   
Sbjct: 169 FPVRLIAFAAV-EGIMFSGSFAAIFWLKKRGVMKGLTHSNELISRDEGLHRDFACLLYK- 226

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                 ++  K  Q++   ++ EA  LE  Y  E +P   +G+N     QY++++A+   
Sbjct: 227 ------YIKHKPSQEQVYEIIKEAVSLEQEYLTEALPVDLIGMNCRLMSQYIEYVADHLL 280

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++G   ++  + NPF +M E + ++ + NFFE RV+EYQ+   L 
Sbjct: 281 TELGYPKVYNAS-NPFDFM-ENLSIEAKTNFFERRVSEYQRAGVLS 324


>gi|86134368|ref|ZP_01052950.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp.
           MED152]
 gi|85821231|gb|EAQ42378.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp.
           MED152]
          Length = 323

 Score =  255 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 159/332 (47%), Gaps = 28/332 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
             + +L    +   + P+++   WE Y       W   E+ +  DL  W +   LTDDER
Sbjct: 3   KQEPILQPNDNRFVIFPIQHNDLWEWYKKQQACFWTAEEIDLHSDLVDWTT--KLTDDER 60

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +  
Sbjct: 61  YFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYV 120

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            DE E   LF      P+I  KA+WAL++ ++              + F + L  F  V 
Sbjct: 121 KDEVEKDRLFRAIEVFPAIKKKADWALKWIES--------------ESFAERLIAFAAV- 165

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   + G+    + I RDE +H +F + +       N H+  + 
Sbjct: 166 EGIFFSGAFCSIFWLKKRGLLPGLTFSNELISRDEGMHCDFAVHLH------NNHIVNRV 219

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            + + + ++ +A  +E  +  E++P   +G+NA    QY++F+ +R   + G E ++  T
Sbjct: 220 PKDRIKEIIVDALDIEREFVTESLPVSLIGMNAKLMTQYLEFVTDRLLLEFGCEKVYDVT 279

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
            NPF +M E+I L+ + NFFE RV+EYQ+   
Sbjct: 280 -NPFDFM-EMISLEGKTNFFEKRVSEYQKAGV 309


>gi|145553335|ref|XP_001462342.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124430181|emb|CAK94969.1| unnamed protein product [Paramecium tetraurelia]
          Length = 355

 Score =  255 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 90/336 (26%), Positives = 152/336 (45%), Gaps = 29/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N  D+ +L    +   L P+KY   W  Y     + W   E+ +  DL  W+    LT D
Sbjct: 33  NYCDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLYQDLKDWE---KLTAD 89

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  IK  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +
Sbjct: 90  EKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIAMENIHSETYSLLIDT 149

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              DE E   L +    VP I  KA WA+++     S                +  + + 
Sbjct: 150 YITDENEKNYLLHAIDNVPVIQKKAMWAMKWINENDS--------------FAERLIAFA 195

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   F  I  + + + M G+    + I RDE LH +F   +   +  +  +   
Sbjct: 196 AVEGIFFSGSFCAIFWIKKRSLMPGLTFSNELISRDEGLHTDFACLLYKHLVNKMSNQRI 255

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            E       ++  A  +E  +  E +P   +G+N+   +QY++F+A+R    +G   ++ 
Sbjct: 256 HE-------IISSAVEIEKEFISEALPVELIGMNSNLMKQYIEFVADRLIFALGAPKIYN 308

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++NPF WM  +I L+ + NFFE RV +YQ+   + 
Sbjct: 309 -SKNPFEWMD-MISLQGKTNFFERRVGDYQKAGVMS 342


>gi|261335316|emb|CBH18310.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei gambiense DAL972]
          Length = 337

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+KY   W+KY  A ++ W    + + +D+  W+    L D ER 
Sbjct: 16  EEPLLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVENIYLGNDMTDWE---KLDDGERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  +
Sbjct: 73  FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   L +  R +P I  KA WA+++  + +S             F   L  F  V E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVAFAAV-E 178

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +  +       +  K  
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKY------IVNKLP 232

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + +   ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M  +I L+ + NFFE +V EYQ+   + 
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|289582310|ref|YP_003480776.1| ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099]
 gi|289531863|gb|ADD06214.1| Ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099]
          Length = 330

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 160/331 (48%), Positives = 230/331 (69%), Gaps = 4/331 (1%)

Query: 23  RMLN--ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            ++N  A  D N++LP+ Y WA E Y +  NN+W+P E+PMQDD++ W   + L+D ER 
Sbjct: 2   PIINTDAEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVSQWN-GDALSDAERQ 60

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +++ NLGFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y   SLG 
Sbjct: 61  LVEWNLGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGF 120

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +   ++ MY  +PSI  K  + +  T+ ++   F   T +  ++F++DL  FYV+ EG++
Sbjct: 121 EPDYMYGMYDRIPSIAEKDEFVIDLTRVINQNGFVIETDEDLRDFIRDLVGFYVIMEGIF 180

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY GFA +L L R NKMVGI +Q++YIMRDESLH+ FG+D+I+QI++ENP +WT  F  +
Sbjct: 181 FYAGFAMMLGLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLIDQIRMENPDVWTDAFGDE 240

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  LE  YA+E  P   +G++A    +Y++ IA+RR  Q+ L   +  T+NPF
Sbjct: 241 VVELITEAVELEKIYAYEACPDEILGMSADQFAEYVEHIADRRLGQLDLPTQYG-TDNPF 299

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           PW+SE +DL KEKNFFET+VTEYQ G  L W
Sbjct: 300 PWLSEQVDLNKEKNFFETQVTEYQSGGSLDW 330


>gi|297209|emb|CAA48969.1| C8L [Variola virus]
 gi|745144|prf||2015436AF C8L gene
          Length = 333

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 89/337 (26%), Positives = 151/337 (44%), Gaps = 29/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           VN+  + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT 
Sbjct: 11  VNLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I 
Sbjct: 68  DEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLID 127

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LFN    +P +  KA+WA ++                D     +  + +
Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAF 173

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +   +        
Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL------- 226

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               ++  R+++ +A  +E  +    +P   +G+N    + YM+F+A+R   ++G + ++
Sbjct: 227 YPPSEETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIY 286

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             T NP  +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 287 NVT-NPSDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321


>gi|18640273|ref|NP_570429.1| CMLV039 [Camelpox virus]
 gi|18482949|gb|AAL73746.1|AF438165_36 ribonucleotide reductase small subunit [Camelpox virus M-96]
 gi|19717972|gb|AAG37497.1| CMP39L [Camelpox virus CMS]
          Length = 319

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/332 (25%), Positives = 147/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT +E+  
Sbjct: 2   EPILAKNQNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPNEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +   +++ +A  +E  +    +P   +G+N    + Y++F+A+R   ++G + ++    N
Sbjct: 218 ETVISIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVI-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|156102402|ref|XP_001616894.1| ribonucleoside-diphosphate reductase small chain [Plasmodium vivax
           SaI-1]
 gi|148805768|gb|EDL47167.1| ribonucleoside-diphosphate reductase small chain, putative
           [Plasmodium vivax]
          Length = 349

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 165/342 (48%), Gaps = 29/342 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  ++    ++++L+  +D   L P+ Y   W+ Y  A  + W   E+ +  DL  ++ 
Sbjct: 20  FSDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE- 78

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D+E+  IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T
Sbjct: 79  --KLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSET 136

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   DE E   LF+    +P++  KA WA ++    +S                
Sbjct: 137 YSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNS--------------FA 182

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V     EG+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ 
Sbjct: 183 ERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLEN 242

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           + P       ++  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +
Sbjct: 243 KLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECL 295

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           G   +F + +NPF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 296 GSPKIF-HAKNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335


>gi|221120499|ref|XP_002159812.1| PREDICTED: similar to hCG23833 [Hydra magnipapillata]
          Length = 387

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 154/333 (46%), Gaps = 27/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L        L P++Y   W+ Y  A  + W   EV +  D   W+    L   E+ 
Sbjct: 59  DEPLLRENPRRFVLFPIQYKDIWKMYKQAEASFWTVEEVDLAADAVHWEE--KLKPQEKY 116

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  +  +I +L  
Sbjct: 117 FISHVLAFFAASDGIVNENLVECFSQEVQLPEARAFYGFQIAIENIHSEMYSLLIDTLIK 176

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LFN    +P +  KA WAL++                D     +  V +   E
Sbjct: 177 DPIEKSNLFNAIETMPCVQKKAVWALKWIN-------------KDCASFSERVVAFAAVE 223

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L + N + G+    + I RDE LH +F   +   I         K  
Sbjct: 224 GIFFSGSFAAIFWLKKRNLLPGVTFSNELISRDEGLHCDFACLMYKHIVN-------KPS 276

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++ + ++ +A  +EI +  E++P   +G+N    + Y++F A+R  + +G    +   E
Sbjct: 277 EERVKQIIRDAVAIEIEFLTESLPCDLLGMNKSLMKTYIEFCADRLINALGYSKEWNV-E 335

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L ++ NFFE+RV++YQ+   + 
Sbjct: 336 NPFDFM-ENISLARKANFFESRVSDYQKAGVMD 367


>gi|150024561|ref|YP_001295387.1| ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771102|emb|CAL42569.1| Ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 325

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/334 (27%), Positives = 161/334 (48%), Gaps = 28/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P+K+   WE Y S   + W   E+ +  DL  W   N L++DER  
Sbjct: 5   EPILQENKNRFVIFPIKHHDIWEFYKSMEASFWTAEEIDLSQDLNDWN--NKLSNDERYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           +K  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  VKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E    ELFN     P+I  KA+WALQ+ ++ S                 +  + +   EG
Sbjct: 123 EVEKDELFNALEVFPAIKKKADWALQWIESDS---------------FAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + + N           K  +
Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHLHNHHL------VNKVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R+++ +A  +E  +  E++P   +G+NA    QY++F+A+R   ++G +  +  T N
Sbjct: 222 ERIRSIIVDALNIEREFITESLPVSLIGMNAVLMTQYLEFVADRLLVELGCDREYN-TAN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M  +I L+ + NFFE +V EYQ+   +  D
Sbjct: 281 PFDFMD-MISLQGKTNFFEKKVAEYQKAGVMNTD 313


>gi|303278144|ref|XP_003058365.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459525|gb|EEH56820.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 338

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/332 (28%), Positives = 158/332 (47%), Gaps = 30/332 (9%)

Query: 22  KRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + +L+A  S+   + P+KYG  WE Y  A  + W   EV + DD+  W+    L+DDE+ 
Sbjct: 14  EPILDAAGSERFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMKHWE---KLSDDEKH 70

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+ +     +  PE R +   Q   E +HS  +  +I +   
Sbjct: 71  FISHILAFFAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENIHSEMYSLLIDAYIK 130

Query: 141 ---DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
               +  LF     +P +  KA+WAL++ ++                F + L   +   E
Sbjct: 131 DAAQKKYLFEAMENIPCVAKKADWALKWIES-------------SATFAERLIA-FACIE 176

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   + + ++        K  
Sbjct: 177 GIFFSGSFCSIYWLKKRGMMPGLTFSNELISRDEGLHRDFACLLYSYLQN-------KPD 229

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
               R ++ EA  +E  +  + +P   VG+N     +Y++F+A+    Q+GLE  +  T 
Sbjct: 230 VSIVRQIVCEAVEIEKEFVCDALPVSLVGMNKDLMSEYIEFVADHLLGQLGLEKEYN-TV 288

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E+I L+ + NFFE RV EYQ+   +
Sbjct: 289 NPFEFM-ELISLQGKTNFFEKRVGEYQKSGVM 319


>gi|254449372|ref|ZP_05062814.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium HTCC5015]
 gi|198261018|gb|EDY85321.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
           proteobacterium HTCC5015]
          Length = 404

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 136/349 (38%), Positives = 191/349 (54%), Gaps = 5/349 (1%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
             T  + +  G   V  +DK+++N  +D+NQL P KY WAWE +L+A  NHW P ++ M 
Sbjct: 61  EQTNAAQMSGGVNPVKAEDKKVVNGMADINQLAPFKYPWAWEYFLNANKNHWTPLDINMA 120

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+  +     LT +ER +    L +  +S+ +   NI LA+   +S PE + Y  RQ +
Sbjct: 121 QDVHDFHH--KLTLEERHVYTNVLSYLTTSDIMAMRNIGLAVMEKMSAPELQIYQARQVY 178

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EE++H+ T+Q+ I +LGLD+GE++N YR VP I AK   A +   ++  P      +D  
Sbjct: 179 EESLHTWTYQHCIETLGLDQGEVYNRYRVVPEINAKIQIANRRLNSVMRPDIDLNDRDEL 238

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
             FL     F  +FEG WFY GF+ I +L R   M G AEQ QYIMRDE +H +FG+ V 
Sbjct: 239 HNFLMSYIFFAGIFEGCWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVMHASFGLRVA 298

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            QI  E          +  R M  E    E  YA   +    +G +A       +FIANR
Sbjct: 299 RQIMREENIQPDP---KAMREMWDECEAAEEGYARYLLRDPILGYSAEDHVNQFRFIANR 355

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           R +++ LE  F   EN  PW+ E  +++KEKNFFETRVTEYQ G  L W
Sbjct: 356 RANKLSLEEPFPGAENALPWLDEQANMRKEKNFFETRVTEYQVGGGLTW 404


>gi|301097698|ref|XP_002897943.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
           infestans T30-4]
 gi|262106388|gb|EEY64440.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
           infestans T30-4]
          Length = 360

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/352 (23%), Positives = 152/352 (43%), Gaps = 41/352 (11%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + +   +S  +  E    +  +  L A  +   L P++    W+ Y  A  + W   E+ 
Sbjct: 33  LKDELEMSEYKRKELSGELQPEPYLVANPNRFVLFPIQEHDVWQMYKKAEASFWTAEELD 92

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  DL  W     LTD+ER  IK  L FFA+S+ +V  N+ +     +  PE R +   Q
Sbjct: 93  LVHDLNDW---AKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQIPEARCFYGFQ 149

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS  +  +I +   D  E   L      +P +  K                   
Sbjct: 150 IAIENIHSEVYSLLIDTYIKDAVEKDHLLRAIETIPCVQKKH------------------ 191

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                     +  + +   EG++F   F  +  L +   M G++   + I RDE +H +F
Sbjct: 192 --------SNERLLAFAAVEGIFFSGSFCSVFWLKKRGLMPGLSFSNEMISRDEGMHTDF 243

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + +++  + P       + +   ++ +A  +E  +  +++P   +G+N+    QY++
Sbjct: 244 ACLMYSKLVNKLP-------ESRVHEIIRDAVAIEHEFVCDSLPVELIGMNSALMCQYIE 296

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           F+A+R  + +G+  ++   +NPF WM  +I L+ + NFFE RV EY +    
Sbjct: 297 FVADRLLYSLGVSKIYNV-KNPFDWMD-MISLQGKTNFFEKRVGEYSKAGVG 346


>gi|254442775|ref|ZP_05056251.1| ribonucleoside-diphosphate reductase, beta subunit
           [Verrucomicrobiae bacterium DG1235]
 gi|198257083|gb|EDY81391.1| ribonucleoside-diphosphate reductase, beta subunit
           [Verrucomicrobiae bacterium DG1235]
          Length = 361

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 123/330 (37%), Positives = 195/330 (59%), Gaps = 2/330 (0%)

Query: 22  KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           K+++N R  +   LLPLKY WA+E Y +   NHW P ++ M  D+  WK    +++ ER 
Sbjct: 26  KKIINGRETMTFNLLPLKYNWAYEIYKTMKANHWEPEDIGMNKDIEQWKDTEQVSEIERW 85

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +I   +G+F+++E +V +NI+  I   ++ PE +  L R A EE VH+ +  Y+I+SLG+
Sbjct: 86  IIMMGIGYFSAAEGIVGDNILHVIRELVTAPELKLVLGRHAHEENVHADSLLYMISSLGI 145

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +  E   M+ ++P+I  K  +  + +  L +    T T +  Q+F +++F+F    EG  
Sbjct: 146 NPHECEAMFEDIPTIVKKNEFVTRQSHALRNDVDLTIT-ENKQKFAKNVFLFGQCMEGTQ 204

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  F  ILSL R NK  GI E ++Y +RDES H+    ++   +  ENP +WT EF+ +
Sbjct: 205 FYGMFGMILSLYRQNKFRGIGEMFRYTLRDESNHIELLRNLFMDLIEENPDVWTPEFKAE 264

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R  + EA  LE  +  + +P   +GL      QY+ +IA+RR    GL+PL     NP 
Sbjct: 265 LRDAMSEAIALEKEFIADCLPVDSIGLRKEDFVQYIDYIADRRLEGCGLDPLTPGVTNPL 324

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PW++E++D+KKE+NFFE RVTEYQ+ + L+
Sbjct: 325 PWLAEMMDIKKEQNFFEGRVTEYQKASSLE 354


>gi|39977011|ref|XP_369893.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15]
 gi|145016179|gb|EDK00669.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15]
          Length = 403

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 155/353 (43%), Gaps = 40/353 (11%)

Query: 4   NTGLSPIQAGEKRVNVD----DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
              + P++       +     D+ +L                 W+ Y  A  + W   E+
Sbjct: 52  AKDVKPVEKPAVAPTIKAFEMDEPILQENPQRFV---------WQMYKKAEASFWTAEEI 102

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  DL  W   N LTDDE+  I   L FFA+S+ +V  N+V      +  PE R +   
Sbjct: 103 DLSKDLHDWN--NKLTDDEKYFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGF 160

Query: 120 QAFEEAVHSHTFQYIITSLGL---DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
           Q   E +HS T+  +I +          LFN    +P I  KA+WAL++           
Sbjct: 161 QIMMENIHSETYSLLIDTYIKETAQRTYLFNAIDTIPCIRKKADWALRWI---------- 210

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
              D    F   L  F VV EG++F   FA I  L +   M G+    + I RDE LH +
Sbjct: 211 --TDKKSTFATRLIAFAVV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTD 267

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
           F   + + +         +  ++  + ++ +A  +E  +  E +P   +G+NA   +QY+
Sbjct: 268 FACLLFSLLNN-------RPNKEVVKEIVVDAVKIEQEFLTEALPCALLGMNANLMKQYI 320

Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +F+A+R    +G E ++    NPF +M E I L  + NFFE RV EYQ+   +
Sbjct: 321 EFVADRLLVALGNEKVY-RATNPFDFM-ENISLGGKTNFFEKRVGEYQKAGVM 371


>gi|544843|gb|AAB29634.1| C8L product [variola virus VAR, India-1967, Peptide, 333 aa]
          Length = 333

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/337 (26%), Positives = 152/337 (45%), Gaps = 29/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           VN+  + +L    +   + P++Y   W  Y  A  + W+  EV +  D+  W   N LT 
Sbjct: 11  VNLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWIVEEVDISKDINDW---NKLTP 67

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I 
Sbjct: 68  DEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLID 127

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LFN    +P +  KA+WA ++                D     +  + +
Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAF 173

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +   +        
Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL------- 226

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               ++  R+++ +A  +E  +    +P   +G+N    + YM+F+A+R   ++G + ++
Sbjct: 227 YPPSEETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIY 286

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             T NP  +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 287 NVT-NPSDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321


>gi|290977320|ref|XP_002671386.1| predicted protein [Naegleria gruberi]
 gi|284084954|gb|EFC38642.1| predicted protein [Naegleria gruberi]
          Length = 338

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 92/334 (27%), Positives = 159/334 (47%), Gaps = 28/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +L        L PL+Y   WE Y  A  + W   EV +  D+  W +   LT +E+
Sbjct: 17  KEEALLKENPHRFVLFPLEYPKIWEMYKKAMASFWTAEEVDLHTDITQWTT---LTPNEQ 73

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             IK  L FFA+S+ +V  N+       +  PE R +   Q   E +H+  +  +I +L 
Sbjct: 74  HFIKSVLAFFAASDGIVNENLCQQFMAEVQIPEARCFYGFQIAIENIHAEMYSTLIETLI 133

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D+ E   LFN    VPS+  KA WA+++                 +    +  + +   
Sbjct: 134 KDQRERHRLFNAIDTVPSVQKKARWAMKWINN--------------ENLFAERLLAFACV 179

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   M G+A   + I RDE LH +F   + + +K      +TK 
Sbjct: 180 EGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHTDFACLLYSTLK------FTKL 233

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            QQ   +++ EA  +E  +  E++P   +G+N+   +QY++ +A+R    +G + ++  +
Sbjct: 234 PQQVVHSLVSEAVEIEKEFICESLPVDLIGMNSRLMQQYIEMVADRLLVSLGYDKIYN-S 292

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPF WM+ +I +  + NFFE +V EY +   + 
Sbjct: 293 PNPFDWMN-IISVSGKTNFFEKKVGEYAKANIMS 325


>gi|213402763|ref|XP_002172154.1| ribonucleoside-diphosphate reductase small chain
           [Schizosaccharomyces japonicus yFS275]
 gi|212000201|gb|EEB05861.1| ribonucleoside-diphosphate reductase small chain
           [Schizosaccharomyces japonicus yFS275]
          Length = 392

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 27/338 (7%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K+ +  D+ +L        + P++Y   W+ Y  A  + W   E+ +  DL  W   N L
Sbjct: 61  KKEDEKDEVVLTPNPRRFVMFPIEYHDIWQFYKKAEASFWTAEEIDLSKDLHDWD--NKL 118

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             DER  I   L +FA+S+ +V  N++      +   E R     Q   E +HS T+  +
Sbjct: 119 NKDERYFISTVLAYFAASDGIVNENLLSRFSSEVQIAEARCVYGFQIMIENIHSETYSLL 178

Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           + +   D  E    F+    + SI AKA WAL++ +               +       V
Sbjct: 179 LDTYIRDPYEKQRHFDAILTMGSIKAKAKWALRWIE-------------DPESIYAVRLV 225

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   FA I  L +   M G+    + I RDE +H +F   + + +K     
Sbjct: 226 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGVHTDFACLMFSHLK----- 280

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
              +  ++    ++ EA  +E  Y  + +P   +G+N     QY++F+A+R    +G E 
Sbjct: 281 --HRPGKKVVERIIIEAVNIEKEYFTDALPVYLLGMNCDLMCQYIEFVADRLLLSLGNEK 338

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            +  T NPF +M E I L  + NFFE +V++YQ    +
Sbjct: 339 YYNVT-NPFDFM-ENISLAGKTNFFEKKVSDYQIAGVM 374


>gi|145352915|ref|XP_001420779.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581014|gb|ABO99072.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 346

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 92/331 (27%), Positives = 153/331 (46%), Gaps = 29/331 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   L P+K+   WE Y  A  + W   EV +  D   W +   L D+E+  
Sbjct: 27  EPLLRDNPDRFCLFPIKHAKVWEMYKKAEASFWTAEEVDLTYDYRDWIT---LNDNEQHF 83

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS  +  ++ +   D
Sbjct: 84  ISHVLAFFAASDGIVLENLCSRFMTDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKD 143

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             +   LF     VP++  KA+WAL++  +             D  F + L   +   EG
Sbjct: 144 PKKKSDLFRAIHTVPTVAKKADWALKWIGS-------------DASFAERLVG-FACVEG 189

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   + + +  ENP       +
Sbjct: 190 IFFSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSML--ENPL-----SE 242

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++ +A  +E  +  + +    VG+NA     Y++F+A+R   Q+G+  L+    N
Sbjct: 243 KVLHQLVGDAVTIEKEFVCDALSCSLVGMNANMMSTYIEFVADRLLLQLGVSKLYNAV-N 301

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PF WM E+I L+ + NFFE RV +YQ+   +
Sbjct: 302 PFDWM-ELISLQGKANFFEHRVDQYQKAGVM 331


>gi|221060582|ref|XP_002260936.1| ribonucleotide reductase small subunit [Plasmodium knowlesi strain
           H]
 gi|193811010|emb|CAQ42908.1| ribonucleotide reductase small subunit,putative [Plasmodium
           knowlesi strain H]
          Length = 349

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 165/345 (47%), Gaps = 29/345 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
               +  ++    ++++L+  +D   L P+ Y   W+ Y  A  + W   E+ +  DL  
Sbjct: 17  EKAFSDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKD 76

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           ++    L ++E+  IK  L FFA+S+ +V  N+     R +   E +++   Q   E +H
Sbjct: 77  FE---KLNENEKHFIKHVLAFFAASDGIVLENLASKFLRQVQITEAKKFYSFQIAVENIH 133

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S T+  +I +   DE E   LF+    +P++  KA WA ++    +S             
Sbjct: 134 SETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNS------------- 180

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V     EG+ F   F  I    + NK+ G+    + I RDE LH +F   + + 
Sbjct: 181 -FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSL 239

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ + P       ++  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R  
Sbjct: 240 LENKLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             +G   +F + +NPF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 293 ECLGSRKIF-HAKNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335


>gi|332876813|ref|ZP_08444570.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685239|gb|EGJ58079.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 324

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 94/330 (28%), Positives = 153/330 (46%), Gaps = 28/330 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+++   W+ Y +A  + W   EV +  DL  W+  N L D+ER  
Sbjct: 4   EPLLQDNKDRFVIFPIQHNDIWQFYKNAEASFWTAEEVDLSPDLHDWQ--NKLNDNERFF 61

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I R L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS  +  +I +   D
Sbjct: 62  ISRVLAFFAASDGIVNENLAINFLQEVQYPEARCFYGFQIMIENIHSEMYSLLIDTYVKD 121

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   L      +P +T KA WAL++                   F + L  F  V EG
Sbjct: 122 PAEKDYLLRAIETIPCVTKKAKWALRWI--------------TKGSFAERLIAFAAV-EG 166

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   +             K  +
Sbjct: 167 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYVNHLQ------NKLSE 220

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R ++ +A  +E  +  + +P   +G+NA    QY++F+A+R    +G   ++  T N
Sbjct: 221 ETIREIIVDAVAIEKEFVTDALPVKLIGMNAELMCQYIEFVADRLLVALGCNKVWNAT-N 279

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           PF +M E+I L+ + NFFE RV EYQ+   
Sbjct: 280 PFDFM-ELISLQGKTNFFERRVGEYQKTGV 308


>gi|241951880|ref|XP_002418662.1| ribonucleoside diphosphate reductase, putative [Candida
           dubliniensis CD36]
 gi|223642001|emb|CAX43965.1| ribonucleoside diphosphate reductase, putative [Candida
           dubliniensis CD36]
          Length = 394

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 90/338 (26%), Positives = 156/338 (46%), Gaps = 27/338 (7%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +    ++ +L      + + P+KY   W+ Y  +  + W   E+ +  DLA W   N + 
Sbjct: 65  KQEESNEPLLTKDKTRHTIYPIKYPELWQFYKKSLASFWTAEELDLSKDLADWN--NKMN 122

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           ++ER  I R L FFA+S+ +V  N+V      +  PE +     Q   E +HS T+  +I
Sbjct: 123 ENERFFISRVLAFFAASDGIVNENLVENFCAEVQIPEAQSVYKFQIMMENIHSETYSLLI 182

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   LFN    +P I  KA+WA+++ Q              +     +  V 
Sbjct: 183 ETYFKDPEEADFLFNAIENIPFIREKADWAIRWIQ-------------DEDALYAERLVA 229

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE +H ++   + + +K +    
Sbjct: 230 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLKNKPSP- 288

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
                 +    ++ EA  +E  Y  + +P   +G+N     QY++F+A+R     G +  
Sbjct: 289 ------EIIEKIITEAVTIEKKYFSDALPVSLLGMNCDLMCQYVEFVADRLLVAFGNKKY 342

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +  T NPF +M E I L  + NFFE RV++YQ+   ++
Sbjct: 343 YNVT-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVME 378


>gi|322817571|gb|EFZ25271.1| ribonucleoside-diphosphate reductase small chain, putative
           [Trypanosoma cruzi]
          Length = 337

 Score =  253 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/336 (26%), Positives = 159/336 (47%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
              ++ +L    D   + P+KY   W+KY  A ++ W   E+ +  DLA W+    + + 
Sbjct: 13  QEQEEPLLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWE---KMNEG 69

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  IK  L FFA+S+ +V  N+       +  PE R +   Q   E VHS T+  ++ +
Sbjct: 70  EKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDT 129

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   + +    +P I  KANWA+++ ++ SS                +  V + 
Sbjct: 130 YITDTEEKDRMLHAISTIPCIQKKANWAIRWIRSSSS--------------FAERLVAFA 175

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   F  +  L +   M G+    + I RDE LH +F   +         ++  
Sbjct: 176 AVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------ENYIVN 229

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K   ++ R ++  A  +E  +  +++P   +G+NA     Y++F+A+R    +G E  + 
Sbjct: 230 KLPTERIREIICSAVDIEREFICDSIPVRLLGMNADLMSTYIEFVADRLLVALGNERHYN 289

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++NPF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 290 -SKNPFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|68485781|ref|XP_713171.1| hypothetical protein CaO19.9424 [Candida albicans SC5314]
 gi|68485874|ref|XP_713125.1| hypothetical protein CaO19.1868 [Candida albicans SC5314]
 gi|46434604|gb|EAK94008.1| hypothetical protein CaO19.1868 [Candida albicans SC5314]
 gi|46434651|gb|EAK94054.1| hypothetical protein CaO19.9424 [Candida albicans SC5314]
 gi|238883648|gb|EEQ47286.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
           albicans WO-1]
          Length = 394

 Score =  253 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 156/338 (46%), Gaps = 27/338 (7%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +    ++ +L      + + P+KY   W+ Y  +  + W   E+ +  DL  W   N + 
Sbjct: 65  KQEESNEPLLTPDKTRHTIYPIKYPELWQFYKKSLASFWTAEELDLSKDLDDWN--NKMN 122

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           ++ER  I R L FFA+S+ +V  N+V      +  PE +     Q   E +HS T+  +I
Sbjct: 123 ENERFFISRVLAFFAASDGIVNENLVENFCAEVQIPEAKSVYKFQIMMENIHSETYSLLI 182

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   LFN    +P I  KA+WA+++ Q+             +     +  V 
Sbjct: 183 ETYFKDPEEADFLFNAIDNIPFIRKKADWAIRWIQS-------------EDALYAERLVA 229

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG++F   FA I  L +   M G+    + I RDE +H ++   + + +K +    
Sbjct: 230 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLKNKPSS- 288

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
                 +    ++ EA  +E  Y  + +P   +G+N     QY++F+A+R     G +  
Sbjct: 289 ------EIIEKIITEAVDIEKEYFSDALPVSLLGMNCDLMCQYVEFVADRLLVAFGNKKY 342

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +  T NPF +M E I L  + NFFE RV++YQ+   ++
Sbjct: 343 YNVT-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVME 378


>gi|325953830|ref|YP_004237490.1| ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922]
 gi|323436448|gb|ADX66912.1| Ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922]
          Length = 323

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 90/331 (27%), Positives = 154/331 (46%), Gaps = 28/331 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    +   + P+++   W+ Y  A  + W   EV +  D+  W+  N L  DER 
Sbjct: 2   NEPILQNNKNRFVIFPIQHDDIWQFYKKAEASFWTAEEVDLSSDMNDWQ--NKLNKDERY 59

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+ +   + +  PE R +   Q   E +HS  +  +I +   
Sbjct: 60  FISHVLAFFAASDGIVNENLAVNFVQEVQYPEARFFYGFQIMIENIHSEMYSLLIDTYIK 119

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   L      +P +  KA+WAL++ ++                F + L  F  V E
Sbjct: 120 DPKEKDHLLRAIETIPCVGKKADWALEWIES--------------DNFAERLIAFAAV-E 164

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +             K  
Sbjct: 165 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYVNHLK------NKLP 218

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++  + ++ +A  +E  +  E +P   +G+NA    QY++F+A+R    +G + ++  T 
Sbjct: 219 EETVQKIIADAVEVEKEFVTEALPVRLIGMNAELMCQYIEFVADRLLDALGCKKVWNAT- 277

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           NPF +M E+I L+ + NFFE RV EYQ+   
Sbjct: 278 NPFDFM-ELISLQGKTNFFERRVGEYQKSGV 307


>gi|66822029|ref|XP_644369.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
           AX4]
 gi|66823381|ref|XP_645045.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
           AX4]
 gi|41019487|sp|P42521|RIR2_DICDI RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|29611978|gb|AAB72227.2| ribonucleotide reductase small subunit [Dictyostelium discoideum]
 gi|60472492|gb|EAL70444.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
           AX4]
 gi|60472997|gb|EAL70945.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
           AX4]
          Length = 338

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 94/337 (27%), Positives = 156/337 (46%), Gaps = 28/337 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
            + +   + +L    D   L P+KY   W  Y  A  +HW+  E+ + +D   W+    L
Sbjct: 5   NKKDTFIEPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWE--YKL 62

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           TD+ER  I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +
Sbjct: 63  TDNERHFISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLL 122

Query: 135 ITSLGLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D+    +LFN    +P I  KA WAL++     S                +  V
Sbjct: 123 IETYIKDKQTKDKLFNAIETIPCIKKKAEWALRWINDSDS--------------FAERLV 168

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
            +   EG++F   F  I  L +   M G+    + I RDE LH +F   +  +++ +   
Sbjct: 169 AFAAVEGIFFSGSFCSIFWLKKRGLMQGLTFSNELISRDEGLHCDFACLLYTKLQRKLDP 228

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                  +    M+ +A   E  +  E++P   +G+N+ S  QY++F A+R    +G + 
Sbjct: 229 -------KVIEKMIRDAVECEKEFICESLPVDLIGMNSRSMSQYIEFCADRLVVSLGYKK 281

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +F  + NPF WM E+I L+++ NFFE +V EY +   
Sbjct: 282 IFN-SSNPFEWM-EMISLQRKSNFFEGKVAEYAKTGV 316


>gi|306478720|ref|NP_042072.2| Ribonucleoside-diphosphate reductase small chain [Variola virus]
 gi|464615|sp|P33799|RIR2_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
          Length = 319

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 148/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P++Y   W  Y  A  + W   EV +  D+  W   N LT DE+  
Sbjct: 2   EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WA ++                D     +  + +   EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +  R+++ +A  +E  +    +P   +G+N    + YM+F+A+R   ++G + ++  T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIYNVT-N 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           P  +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 277 PSDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307


>gi|163753569|ref|ZP_02160692.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia
           algicida OT-1]
 gi|161325783|gb|EDP97109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia
           algicida OT-1]
          Length = 326

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 98/332 (29%), Positives = 160/332 (48%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+K+   WE Y  +  + W   E+ +  DL  W +   L DDER  
Sbjct: 6   EPILQENKDRFVIFPIKHADIWEWYKKSEASFWTAEEIDLHQDLTDWTT--KLNDDERYF 63

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 64  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF      P+I  KA+WALQ+ ++                F + L  F  V EG
Sbjct: 124 EAEKDKLFKAIENFPAIKKKADWALQWIES--------------PSFAERLIAFAAV-EG 168

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + +       N HL  K  +
Sbjct: 169 IFFSGAFCSIYWLKKRGIMPGLTFSNELISRDEGVHCDFAVHLH------NNHLVNKVPK 222

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R ++ +A  +E  +  E++P   +G+NA    QY++F+ +R   ++G E  +  + N
Sbjct: 223 ERIRAIIVDALNIEREFITESLPVSLIGMNAKLMTQYLEFVTDRLLQELGCEKEYNVS-N 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M  +I L+ + NFFE RV+EYQ+   L 
Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVSEYQKAGVLN 312


>gi|162147608|ref|YP_001602069.1| ribonucleotide-diphosphate reductase subunit beta
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542240|ref|YP_002274469.1| ribonucleotide-diphosphate reductase subunit beta
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786185|emb|CAP55767.1| putative ribonucleotide reductase small subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209529917|gb|ACI49854.1| Ribonucleoside-diphosphate reductase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 353

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/354 (24%), Positives = 161/354 (45%), Gaps = 20/354 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           + N TG +P  A +         +L +        P +Y WA++ +L+    HW+P EVP
Sbjct: 4   ITNATGTAPESAPQPTGVEARLDLLTSNP---IYKPFRYPWAYDAWLTQQRVHWLPEEVP 60

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + DD+  W     LT+ E+ ++ +   FF  S+  V N  +    R     E    L   
Sbjct: 61  LADDVKDWH--RTLTESEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAF 118

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +  E +H   + +++ ++G+ E E ++ + +   +  K ++   +            + D
Sbjct: 119 SNIETIHIAAYSHLLDTIGMPEME-YSAFLKYKEMKDKYDYMQGF------------SVD 165

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           +  E  + L  F    EG+  +  FA +L+  R NK+ G+ +   + +RDE+LH      
Sbjct: 166 SKPEIARTLAAFGAFTEGLQLFASFAILLNFPRFNKLKGMGQIVSWSVRDETLHCLSMAR 225

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
           +      ENP +WT   +     +  +    E A+       G   GL+    + Y++FI
Sbjct: 226 LFRVFIQENPEIWTDALRADIVQICRDIVEHEDAFIDLCFEMGPVEGLDGDLVKTYIRFI 285

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
           A+RR + +GL+ ++    NP PW+ ++++  +  NFFE R TEY + +    W+
Sbjct: 286 ADRRLNLLGLDGIYDVPSNPLPWVDDMLNAVEHTNFFENRSTEYSRASTTGSWE 339


>gi|254492407|ref|ZP_05105579.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga
           thiooxidans DMS010]
 gi|224462299|gb|EEF78576.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga
           thiooxydans DMS010]
          Length = 383

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 133/341 (39%), Positives = 187/341 (54%), Gaps = 5/341 (1%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
              K +N DDKR++N  +D+NQL P KY WAW  +L+A  NHW P ++ M  D+  ++  
Sbjct: 48  NNAKAINADDKRVINGEADINQLAPFKYPWAWNYFLNANKNHWTPLDINMAQDVHDYRH- 106

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             LT +ER + +  L +  +S+ L   NI LA+   ++ PE + Y  RQ +EEA+H+ T+
Sbjct: 107 -KLTLEERHVYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTY 165

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           Q+ I ++GLD+ E++N YR VP I  K   A     T+         +D  + F+     
Sbjct: 166 QHCIETIGLDQSEIYNRYRVVPEIHQKIKLANDRLDTVMRSDIDLRDRDELENFVMSYAF 225

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  +FEG WFY GF+ I +L R   M G AEQ QYIMRDE +H +FGI V  QI  E   
Sbjct: 226 FAGIFEGSWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVMHASFGIRVCKQIMKEENI 285

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                  +K + M  EA   E  YA   +    +G +        ++ ANRR  Q+G E 
Sbjct: 286 TLDP---KKVQQMFEEADAAEETYAGYILRDPILGYSKEVHHGQFRYTANRRAKQLGFEE 342

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            F   E   PW+ E  +++KEKNFFET+VTEYQ G  LKWD
Sbjct: 343 PFPGAEATLPWLDEQANMRKEKNFFETKVTEYQTGGGLKWD 383


>gi|329113329|ref|ZP_08242110.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter
           pomorum DM001]
 gi|326697154|gb|EGE48814.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter
           pomorum DM001]
          Length = 339

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 163/348 (46%), Gaps = 20/348 (5%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +S   +G++        +L A        P +Y WA++ +L+    HW+P EVP+ DD+ 
Sbjct: 1   MSEHMSGQEPQQEQKFDLLTANP---VYKPFRYPWAYDAWLTQQRLHWLPEEVPLADDVK 57

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W     L + E+ ++ +   FF  S+  V N  +    R     E    L   +  E +
Sbjct: 58  DWH--RVLNEGEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAFSNIETI 115

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H   + Y++ +LG+ E E ++ + +   +  K ++              T T D+  E  
Sbjct: 116 HIAAYSYLLDTLGMPETE-YSAFLKYKEMKDKYDYMQ------------TFTVDSKHEIA 162

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + L  F    EG+  +  FA +L+  R NK+ G+ +   + +RDE+LH    I +     
Sbjct: 163 KTLAAFGAFTEGLQLFASFAILLNFPRFNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFI 222

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCH 305
            ENP LWT++ + +   +       E A+       G   GLNA   + Y+ FIA+RR  
Sbjct: 223 QENPELWTEQLRTELTDICRTIVEHEEAFIDLAFEMGAVEGLNAEQVKTYIHFIADRRLT 282

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
           Q+GLEP++  T NP PW+ ++++  +  NFFE R TEY + +    W+
Sbjct: 283 QLGLEPIYNTTTNPLPWLDDMLNAVEHTNFFENRSTEYSRASTAGTWE 330


>gi|71648907|ref|XP_813233.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi
           strain CL Brener]
 gi|70878098|gb|EAN91382.1| ribonucleoside-diphosphate reductase small chain, putative
           [Trypanosoma cruzi]
          Length = 337

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 88/337 (26%), Positives = 160/337 (47%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   ++ +L    D   + P+KY   W+KY  + ++ W   E+ +  DLA W+    + +
Sbjct: 12  LQEQEEPLLRENPDRYVIFPIKYHDIWKKYKESESSIWTVEEIDLSSDLADWE---KMNE 68

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+  IK  L FFA+S+ +V  N+       +  PE R +   Q   E VHS T+  ++ 
Sbjct: 69  GEKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLD 128

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   + +    +P I  KANWA+++ ++ SS                +  V +
Sbjct: 129 TYITDTEEKDRMLHAISTIPCIQKKANWAIRWIRSSSS--------------FAERLVAF 174

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  +  L +   M G+    + I RDE LH +F   +         ++ 
Sbjct: 175 AAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------ENYIV 228

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +++ R ++  A  +E  +  + +P   +G+NA     Y++F+A+R    +G E  +
Sbjct: 229 NKLPKERIREIICSAVDIEREFICDAIPVRLLGMNADLMSTYIEFVADRLLVALGNERHY 288

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ++NPF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 289 N-SKNPFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|71416121|ref|XP_810103.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi
           strain CL Brener]
 gi|70874586|gb|EAN88252.1| ribonucleoside-diphosphate reductase small chain, putative
           [Trypanosoma cruzi]
          Length = 337

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 89/336 (26%), Positives = 159/336 (47%), Gaps = 28/336 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
              ++ +L    D   + P+KY   W+KY  A ++ W   E+ +  DLA W+    + + 
Sbjct: 13  QEQEEPLLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWE---KMNEG 69

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  IK  L FFA+S+ +V  N+       +  PE R +   Q   E VHS T+  ++ +
Sbjct: 70  EKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDT 129

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   + +    +P I  KANWA+++ ++ SS                +  V + 
Sbjct: 130 YITDTEEKDRMLHAISTIPCIQKKANWAIRWIRSSSS--------------FAERLVAFA 175

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   F  +  L +   M G+    + I RDE LH +F   +         ++  
Sbjct: 176 AVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------ENYIVN 229

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K   ++ R ++  A  +E  +  +++P   +G+NA     Y++F+A+R    +G E  + 
Sbjct: 230 KLPTERIREIICSAVDIEREFICDSIPVRLLGMNADLMSTYIEFVADRLLVALGNERHYN 289

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++NPF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 290 -SKNPFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|91215505|ref|ZP_01252476.1| probable ribonucleoside-diphosphate reductase small chain
           [Psychroflexus torquis ATCC 700755]
 gi|91186457|gb|EAS72829.1| probable ribonucleoside-diphosphate reductase small chain
           [Psychroflexus torquis ATCC 700755]
          Length = 326

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 158/332 (47%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   L P+ +   WE Y     + W   E+ +Q D+  WK+   L+ DE+  
Sbjct: 5   EPILEENKNRFVLFPITHPDIWEWYKKCEASFWTAEEIDLQQDITDWKT--KLSKDEQYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYTEAKFFYGFQIMVENIHSETYSLLIDTYVDD 122

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LF      P+I  KA+WALQ+ ++ S                 +  + +   EG
Sbjct: 123 DKEKDLLFKAIENFPAIKKKADWALQWIESDS---------------FAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + + N+          +  +
Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGVHCDFAVHLHNEHL------VNQVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R ++ +A  +E  +  E++P   +G+N+    QY++F+A+R   ++G +  +  T N
Sbjct: 222 ERIRAIIVDALTIEREFVTESLPVSLIGMNSNLMTQYLEFVADRLLFELGCDKEYG-TAN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M  +I L+ + NFFE RV EYQ+   + 
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGEYQKAGVMN 311


>gi|301166951|emb|CBW26530.1| putative ribonucleoside-diphosphate reductase small chain subunit
           [Bacteriovorax marinus SJ]
          Length = 322

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 97/332 (29%), Positives = 156/332 (46%), Gaps = 27/332 (8%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
            +L    D   L PLKY   +E Y +     W   E+    D+  W+    L  DE+  I
Sbjct: 3   PILAPNDDRFVLFPLKYHSIFEMYKNHMAVFWTADELDFASDITDWE---KLNKDEQHFI 59

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
           K  L FFA+S+ +V  N+ L  Y  +  PE R +   Q   E +HS T+  +I +   D 
Sbjct: 60  KHILAFFAASDGIVNENLALRFYNDVQIPEARCFYGFQIAMENIHSETYSLLIDTYVKDP 119

Query: 143 ---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
               ELF+     P +  KA+WA+++ Q+              + F + L   +   EG+
Sbjct: 120 KEKDELFHAVTHFPFVEKKADWAMKWMQS-------------KRSFAERLIA-FAAIEGI 165

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           +F   F  I  L +   M G+    ++I RDE LH  F   +   +  E      +  ++
Sbjct: 166 FFSGSFCSIYWLKKRGLMPGLCTSNEFISRDEGLHCEFACHIHELLTPEE-----QLNKE 220

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
               ++ EA  +E  +  E +P   +G+NA    +Y++F+A+   +++G E  +  TENP
Sbjct: 221 TITQIITEAVSIEKEFITEAIPVSLIGMNADMMSRYIEFVADYWLNRLGCEKAYN-TENP 279

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           F WM E+I L+ + NFFE RV+EYQ+   L  
Sbjct: 280 FDWM-ELISLEGKTNFFEKRVSEYQKPGVLGD 310


>gi|225320685|dbj|BAH29738.1| ribonucleoside-diphosphate reductase subunit M2 [Dicyema japonicum]
          Length = 337

 Score =  252 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 162/343 (47%), Gaps = 28/343 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           + + ++  + D + +L +      L P++Y   +  Y  A  + W   EV +  D+  W 
Sbjct: 3   LPSEQEEFSDDQEPLLVSNPRRFVLFPIEYPDIFTMYKQALASIWTVEEVDLSKDIKHW- 61

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L  DE+  I   L FFA+S+ +V  N+V      +   E R +   Q   E +HS 
Sbjct: 62  --NILNSDEKRFISHVLAFFAASDGIVNENLVQRFSVEVQVSEARSFYGLQIAVENIHSE 119

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +   D  E   +F+    +P +  KA+WA+++ ++             +  F 
Sbjct: 120 MYSLLIDTYISDFQEKDKMFSAIETMPFVKKKADWAIRWIES------------TESHFS 167

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + +K
Sbjct: 168 ERLVAFAAV-EGIFFSGSFASIFWLKKRGVMPGLTYSNELISRDEGLHTDFACLLYHHLK 226

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            + P       + +   ++ EA +LE  +  E +P   +G+N     QY++F+A+R   +
Sbjct: 227 KKLP-------RDRILQIITEAVVLEKEFLTEALPVALIGMNVNLMSQYIEFVADRLIIE 279

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +G +  + Y +NPF +M E I L  + NFFE RV EYQ+   +
Sbjct: 280 LGYDKHY-YAQNPFDFM-ENISLSGKTNFFEKRVGEYQRMGVM 320


>gi|9633826|ref|NP_051904.1| gp015L [Rabbit fibroma virus]
 gi|6578545|gb|AAF17899.1|AF170722_17 gp015L [Rabbit fibroma virus]
          Length = 322

 Score =  252 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 155/333 (46%), Gaps = 28/333 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           ++D+ +L    D   + P++Y   W+ Y  A  + W P EV +  DL  W     LT DE
Sbjct: 1   MEDEPVLKESLDRYVVFPIQYNDIWKMYKKAVASFWTPEEVDISKDLKDWH---ILTSDE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +  IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I + 
Sbjct: 58  KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAIENIHSEMYSLLIDTY 117

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
            +D  E   LF     +  I  KA W  ++             ++ D  + + L   +  
Sbjct: 118 IIDIQEKEKLFKAIETMDCIKQKAEWVQKWI------------RNKDATYAERLIA-FAS 164

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +  KM G+    + I RDE LH +F   +   +          
Sbjct: 165 VEGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFKHLN-------HT 217

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             + ++  ++ EA ++E  +  + +P   +G+N     QY++F+A+R   ++G   +F  
Sbjct: 218 PSETRATDIIKEAVVIEQQFLTKALPVRLIGINCDLMCQYIEFVADRLVTELGYSKIFSA 277

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           T NPF +M E I L+ + NFFE RV++YQ+   
Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQRMGV 308


>gi|322795965|gb|EFZ18591.1| hypothetical protein SINV_11129 [Solenopsis invicta]
          Length = 426

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 152/341 (44%), Gaps = 28/341 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKN 72
           +   N + + +L    +   + P++Y   WE Y  A  + W   EVP+   D   W    
Sbjct: 92  KDDFNPELEPLLQEGPNRFVIFPIQYPDIWEMYKKAVASFWTIEEVPLHKLDKKDWDE-- 149

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L  DE+  I   L FFA+S+ +V  N++    + +   E R +   Q   E +HS  + 
Sbjct: 150 KLNSDEKYFISHVLAFFAASDGIVNENLIERFSQEVKIAEARCFYGFQIAIENIHSEMYS 209

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +I +   D  E   LFN    +P +  KA WAL +                +     + 
Sbjct: 210 LLIETYISDPKEKDFLFNAIETLPCVGKKAKWALNWIN-------------HESATFPER 256

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            + +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   I  + 
Sbjct: 257 VIAFAAVEGIFFSGSFAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLIFKHIIQKP 316

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                    +  ++++ +A  +E  +  + +P   +G+N      Y++F+A+R    +G 
Sbjct: 317 SF-------EHVKSIIMDAVEIEKEFLTQALPVELIGMNCSLMCNYIEFVADRLFVALGF 369

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           E ++  +ENPF +M+  I L+ + NFFE +V EY++   ++
Sbjct: 370 EKVYN-SENPFSFMN-FISLEGKTNFFEKKVGEYKKFGVVE 408


>gi|47208564|emb|CAF96041.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 352

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 155/353 (43%), Gaps = 42/353 (11%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        + P++Y   W+ Y  A  + W   EV +  DLA W   + L  +E+  
Sbjct: 5   EPLLQENPRRFVIFPIQYPDIWKMYKQAQASFWTVEEVDLSKDLAHW---DSLKPEEKHF 61

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+V    + +  PE R +   Q   E+VHS  +  +I +   D
Sbjct: 62  ISHVLAFFAASDGIVNENLVQRFCQEVQVPEARSFYSYQVLIESVHSEMYSLLINTYIRD 121

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WALQ+              D+   F + L  F  V EG
Sbjct: 122 LKEREHLFNAIYTMPCVKRKADWALQWIN------------DSTSTFGERLVAFAAV-EG 168

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN--------- 249
           ++F   FA I  L +   M G+    + I RDE LH  F   + + +  +          
Sbjct: 169 IFFSGSFASIYWLKKRGLMPGLTYSNELISRDEGLHCTFACLLYSYLVKKPSEDRVKDII 228

Query: 250 -----------PHLWTKEFQQKSRTMLHEATLLE-IAYAHETMPKGFVGLNAPSCEQYMQ 297
                       +      +     ++ +AT      +  E +P   +G+N    +QY++
Sbjct: 229 TKAVSIEQVGGSYRSMDGNKPNREVLIKDATCFCLQEFLTEALPVDLIGMNRCLMKQYIE 288

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F+A+R    +GL  ++   ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 289 FVADRLFADLGLAKMYN-AENPFDFM-EAISLEGKTNFFEKRVAEYQRFGIMS 339


>gi|70936723|ref|XP_739266.1| ribonucleotide reductase small subunit [Plasmodium chabaudi
           chabaudi]
 gi|56516136|emb|CAH80811.1| ribonucleotide reductase small subunit, putative [Plasmodium
           chabaudi chabaudi]
          Length = 349

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/345 (26%), Positives = 163/345 (47%), Gaps = 29/345 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
               +  ++    ++++LN  S    L P+ Y   W  Y  A  + W   E+ +  DL  
Sbjct: 17  EKEFSDLQKNKECNEKILNKESSRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKD 76

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           ++    L  +E+  IK  L FFA+S+ +V  N+     R +   E +++   Q   E +H
Sbjct: 77  FE---KLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREVQIIEAKKFYAFQIAVENIH 133

Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           S T+  +I +   DE E   LF+    +P+I  KA WA ++    +S             
Sbjct: 134 SETYSLLIDNYIRDEKERLNLFHAIENIPAIKNKALWAAKWINDTNS------------- 180

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V     EG+ F   F  I    + NK+ G+    + I RDE LH +F   + + 
Sbjct: 181 -FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSL 239

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ + P       ++  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R  
Sbjct: 240 LENKLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             +G   +F +++NPF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 293 ECLGCSKVF-HSKNPFSWMD-LISLQGKTNFFEKRVADYQKSGVM 335


>gi|258542157|ref|YP_003187590.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633235|dbj|BAH99210.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636294|dbj|BAI02263.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639347|dbj|BAI05309.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642403|dbj|BAI08358.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645458|dbj|BAI11406.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648511|dbj|BAI14452.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651564|dbj|BAI17498.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654555|dbj|BAI20482.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 339

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 163/348 (46%), Gaps = 20/348 (5%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +S   +G++        +L A        P +Y WA++ +L+    HW+P EVP+ DD+ 
Sbjct: 1   MSEHMSGQEPQQEQKFDLLTANP---VYKPFRYPWAYDAWLTQQRLHWLPEEVPLADDVK 57

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W     L + E+ ++ +   FF  S+  V N  +    R     E    L   +  E +
Sbjct: 58  DWH--RVLNEGEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAFSNIETI 115

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H   + Y++ +LG+ E E ++ + +   +  K ++              T T D+  E  
Sbjct: 116 HIAAYSYLLDTLGMPETE-YSAFLKYKEMKDKYDYMQ------------TFTVDSKHEIA 162

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + L  F    EG+  +  FA +L+  R NK+ G+ +   + +RDE+LH    I +     
Sbjct: 163 KTLAAFGAFTEGLQLFASFAILLNFPRFNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFI 222

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCH 305
            ENP LWT++ + +   +       E A+       G   GLNA   + Y+ FIA+RR  
Sbjct: 223 QENPELWTEQLRTELTDICRTIVEHEEAFIDLAFEMGAVEGLNAEQVKTYIHFIADRRLT 282

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
           Q+GLEP++  T NP PW+ ++++  +  NFFE R TEY + +    W+
Sbjct: 283 QLGLEPIYNTTTNPLPWLDDMLNAVEHTNFFENRATEYSRASTSGTWE 330


>gi|74025554|ref|XP_829343.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
 gi|70834729|gb|EAN80231.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
           brucei]
          Length = 337

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/333 (27%), Positives = 156/333 (46%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P+KY   W+KY  A +N W    + + +D+  W+    L D ER 
Sbjct: 16  EEPLLTENPDRYVIFPIKYPDIWQKYKKARSNFWAMENIYLGNDMTDWE---KLDDGERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+ + +V  N V      +  PE R +   Q   E +HS T+  +I +  +
Sbjct: 73  FIKHVLAFFAARDGIVLENFVQRFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   L +  R +P I  KA WA+++  + +S             F   L  F  V E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVAFAAV-E 178

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE LH +F   +  +       +  K  
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKY------IVNKLP 232

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           + +   ++  A  +E  +  + +P   +G+N+    QY++F+A+R    +G +  +  ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M  +I L+ + NFFE +V EYQ+   + 
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323


>gi|225010999|ref|ZP_03701465.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
           MS024-3C]
 gi|225004906|gb|EEG42862.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
           MS024-3C]
          Length = 328

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 94/334 (28%), Positives = 156/334 (46%), Gaps = 28/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+K+   WE Y       W   E+ + +DL  W   N L +DER  
Sbjct: 6   EPILTENPDRFVIFPIKHDDLWEWYKKCEACFWTAEEIDLSEDLNDWN--NKLNEDERYF 63

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           +K  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 64  VKHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF      P+I  KA+WAL++ ++                F + L  F  V EG
Sbjct: 124 EKEKNKLFKALENFPAIKEKADWALKWIES--------------PSFAERLIAFAAV-EG 168

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H ++ + + N           K  +
Sbjct: 169 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHLHNHHL------INKVPK 222

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            + R +L +A  +E  +  E++P   +G+NA    QY++F+ +R   ++  E  +  + N
Sbjct: 223 ARIREILVDALNIERTFITESLPASLIGMNAKLMTQYLEFVTDRLLVELQCEKEYNVS-N 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M  +I L+ + NFFE RV+EYQ+   L  D
Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVSEYQKAGVLNKD 314


>gi|323453718|gb|EGB09589.1| hypothetical protein AURANDRAFT_60022 [Aureococcus anophagefferens]
          Length = 393

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 149/324 (45%), Gaps = 27/324 (8%)

Query: 28  RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
            S    L P+K    W  Y  A  + W   EV +  D   W+    L + ER  + R L 
Sbjct: 78  DSSRFTLFPIKDAGLWAMYKRAEASFWTAEEVDLGQDKQHWEQ---LDEGERYFLSRVLA 134

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--- 144
           FFA+S+ +V  N+V    + ++ PE R +   Q   E VH   +  ++ +   D GE   
Sbjct: 135 FFAASDGIVLENLVERFAQEVTLPEARFFYAFQGAIEGVHQEMYSLLLETYVEDPGEREA 194

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           L   +  +P + AKA+WA+++T +             D  +   L  F  V EG++F   
Sbjct: 195 LTRAHDLMPCVKAKADWAMKWTAS-------------DAPYAARLLAFAAV-EGVFFSGS 240

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F  I  L +   + G+    + I RDE LH +F   + +++         +    ++  +
Sbjct: 241 FCAIFWLRKRGILPGLGFANELISRDEGLHCDFACALYSRLPGHL-----RLSDAEATAI 295

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           + EA   E+ +  + +P   VG+NA     Y++F+A+R    +G   ++    NPF +M 
Sbjct: 296 ISEAVDTEVDFVTDALPVSLVGMNAKLMTDYVKFVADRLLASLGHPKIYGAA-NPFDFM- 353

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
           E+I ++ + NFFE RV EYQ+   
Sbjct: 354 ELISMQGKTNFFEKRVAEYQKANV 377


>gi|15617531|ref|NP_258331.1| RR2B [Spodoptera litura NPV]
 gi|15553267|gb|AAL01745.1|AF325155_57 ribonucleotide reductase small subunit homolog [Spodoptera litura
           NPV]
          Length = 333

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 96/343 (27%), Positives = 164/343 (47%), Gaps = 33/343 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N+ D+ +L        + P++Y   W  Y  A  + W   EV +  DL+ W   + L + 
Sbjct: 8   NMSDEPLLQENPRRFVMFPIEYPDIWNMYKKAEASFWTVEEVDLSKDLSDW---DSLKES 64

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  IK  L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  +  +I +
Sbjct: 65  ERNFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQVAIENVHSEMYSLLIDT 124

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LFN    +P+I  KA W++++ ++ +              F + L  F  
Sbjct: 125 YVKDNDEKRRLFNAIETMPAIAKKAEWSIKWIKSAT------------ATFAERLIAFAA 172

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           V EG++F   FA I  + +   M G+    + I RDE LH +F   + + I         
Sbjct: 173 V-EGIFFSGSFAAIFWMKKRGLMPGLTFSNELISRDEGLHTDFACLMYSHIVN------- 224

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           K  + +   ++ EA  +E  +  E +P   +G+N     +Y++F+A+R   ++  E  + 
Sbjct: 225 KPTRDRILDIITEAVAIENEFVTEALPVAMLGMNNDLMSKYIEFVADRLLLELIGERHYN 284

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ-----GAELKWD 352
            T+NPF +M+ +I L+ + NFFE +V+EYQ+     G +L+ D
Sbjct: 285 -TKNPFDFMN-LISLEGKTNFFEKKVSEYQKYGVMSGNKLEDD 325


>gi|284043177|ref|YP_003393517.1| ribonucleoside-diphosphate reductase [Conexibacter woesei DSM
           14684]
 gi|283947398|gb|ADB50142.1| Ribonucleoside-diphosphate reductase [Conexibacter woesei DSM
           14684]
          Length = 364

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 118/328 (35%), Positives = 194/328 (59%), Gaps = 2/328 (0%)

Query: 23  RMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           R++  R  +   LLPL+YGWA+E Y +   NHW P +V M  D+  W+ +  L++ +R +
Sbjct: 30  RVVGGRETMTFNLLPLRYGWAYELYRTMKANHWEPEDVQMAKDIEQWRDERALSEIDRWI 89

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           ++  +G+F+++E +V +NI+  +   ++  E +  L R A EE +H+ +  Y+I+SLG+D
Sbjct: 90  VRMAIGYFSAAEGIVGDNILHVVRELMTASELKLVLGRHAHEENIHADSLLYMISSLGID 149

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
             E   M+ ++P+I AK  +    +Q L           +     +++F+F    EG  F
Sbjct: 150 PHECEAMFDDIPTIRAKNAFVTSASQALRR-DLDMQDPRSVALLAKNIFLFGQCMEGTQF 208

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y  F  +LSL R  K+ GI   ++Y +RDES H+     ++ ++  ENP +WT EF+ + 
Sbjct: 209 YGLFGMVLSLYRQGKLPGIGTMFRYTLRDESNHIELFRRLLRELVAENPEIWTAEFRDEL 268

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
           R ++ EA  LE  +  + +P   VGLNA    QY+ +IA+RR   +GLEPL    ENP P
Sbjct: 269 RELMREAVALEQRFIDDCLPVEGVGLNADEFAQYIDYIADRRLEGVGLEPLKPGVENPLP 328

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           W++E++D++KE+NFFE RVTEYQ+ + L
Sbjct: 329 WLAELMDVRKEQNFFEGRVTEYQKASAL 356


>gi|156839886|ref|XP_001643629.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114248|gb|EDO15771.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 394

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 95/333 (28%), Positives = 155/333 (46%), Gaps = 27/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +LN   +   + P++Y   +E Y  A  + W   E+ +  DL+ W   + L  +ER
Sbjct: 67  KNEPLLNEDKNRLIMHPIRYPDIYEAYKKAEASFWTAEEIDLSKDLSDWN--DKLNSNER 124

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I +  
Sbjct: 125 FFISRVLAFFAASDGIVNENLTENFSVEVKVPEARCFYGFQIMIENIHSETYSLLIDTYI 184

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WAL++              + +  F + L   +   
Sbjct: 185 KDPKESDFLFNAIDYIPQIKEKAEWALRWIN------------NDEALFGERLVA-FASI 231

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH +F   + + +  +        
Sbjct: 232 EGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFASLLFSHLDNKPDP----- 286

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                  ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G E  +K  
Sbjct: 287 --AIVEKIVTEAVEIEKRYFIDALPVALLGMNAKLMNQYVEFVADRLLVSFGNEKYYKV- 343

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           ENPF +M E I L  + NFFE RV++YQ+ + +
Sbjct: 344 ENPFDFM-ENISLAGKTNFFEKRVSDYQKASVI 375


>gi|294055010|ref|YP_003548668.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614343|gb|ADE54498.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 360

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/327 (38%), Positives = 201/327 (61%), Gaps = 3/327 (0%)

Query: 24  MLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N +  +   +LPLKY WA++ Y +  NNHW P ++PMQ D+ LW+S + L+D ER +I
Sbjct: 28  IINGKDTMFFNILPLKYQWAYDLYKTMKNNHWEPEDIPMQKDVELWRSAD-LSDAERWII 86

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
           K  +G+F+++E +V +NI       ++ PE +  L R A EE +H+ +  Y+I+SLG++ 
Sbjct: 87  KMAIGYFSAAEGIVGDNIQHVTRELVTAPELKLLLGRHAHEENIHADSLVYMISSLGINP 146

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
            E   M+ ++ +I  K  + +  ++ L      T T D  Q F +++F+F    EG  FY
Sbjct: 147 HECEAMFEDIDTIERKTAFVVNNSRGLRRDMDLTTTADK-QAFTKNMFLFGQCMEGTQFY 205

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
             F  +LSL R NK  GI + ++Y +RDES H+    ++I  +  EN  +WT EF+++ R
Sbjct: 206 GLFGMVLSLYRQNKFPGIGQMFRYTLRDESNHIEVFRNLIMDLIEENEDVWTPEFREELR 265

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            ++ EA  LE  +  + +P   VGL+A    QY+ +IA+RR   +GL PL    +NPFPW
Sbjct: 266 DLMREAVTLEKDFIRDCLPVNSVGLSADEFCQYIDYIADRRLEGVGLAPLSPGVDNPFPW 325

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGAEL 349
           ++E++D+KKE+NFFE RVTEYQ+ + L
Sbjct: 326 LAEMMDIKKEQNFFEGRVTEYQKASAL 352


>gi|82538850|ref|XP_723858.1| ribonucleotide reductase small chain [Plasmodium yoelii yoelii str.
           17XNL]
 gi|145580416|pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580417|pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580418|pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580419|pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580420|pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580421|pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580422|pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|145580423|pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
           (Py03671)
 gi|23478298|gb|EAA15423.1| Ribonucleotide reductase, small chain [Plasmodium yoelii yoelii]
          Length = 349

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/338 (26%), Positives = 162/338 (47%), Gaps = 29/338 (8%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           ++    ++++LN  S+   L P+ Y   W  Y  A  + W   E+ +  DL  ++    L
Sbjct: 24  QKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFE---KL 80

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +
Sbjct: 81  NVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLL 140

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   DE E   LF+    +P+I  KA WA ++    +S                +  V
Sbjct: 141 IDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNS--------------FAERIV 186

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
                EG+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ + P 
Sbjct: 187 ANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP- 245

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                 +   + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   
Sbjct: 246 ------ENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSK 299

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +F +++NPF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 300 VF-HSKNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335


>gi|73974202|ref|XP_858105.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53
           inducible) isoform 4 [Canis familiaris]
          Length = 374

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 100/355 (28%), Positives = 160/355 (45%), Gaps = 37/355 (10%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  V  D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 24  ENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 81  LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++ +               +    +  
Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIE-------------DRKSTFGERV 187

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +  +  
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPS 247

Query: 251 HLWTKEF---------QQKSRTMLHEATLLEI-------AYAHETMPKGFVGLNAPSCEQ 294
               +E            +   M+  +  LEI        +  E +P G +G+N    +Q
Sbjct: 248 EERVREIIVNAVEIEQVSREAYMISTSLFLEIATCRSKHEFLTEALPVGLIGMNCVLMKQ 307

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           Y++F+A+R   ++G   +F   ENPF +M E I L+ + NFFE RV EYQ+ A +
Sbjct: 308 YIEFVADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 360


>gi|307192386|gb|EFN75622.1| Ribonucleoside-diphosphate reductase subunit M2 [Harpegnathos
           saltator]
          Length = 344

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 156/341 (45%), Gaps = 28/341 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKN 72
           ++  N D + +L    +   + P++Y   W+ Y  A  + W   EVP+   D   W+   
Sbjct: 10  KEEFNPDLEPLLQEEPNRFVIFPIRYPDIWDMYKKAVASFWTIEEVPLHKLDKKDWEE-- 67

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L  DER  I   L FFA+S+ +V  N++    + +   E R +   Q   E +HS  + 
Sbjct: 68  KLNSDERYFISHVLAFFAASDGIVNENLIERFCQEVKISEARCFYGFQIAIENIHSEMYS 127

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +I +   D  E   LFN    +P +T KANWAL +                +     + 
Sbjct: 128 LLIETYISDLKEKDFLFNAIETLPCVTKKANWALNWIN-------------HESATFPER 174

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +  + 
Sbjct: 175 IVAFAAVEGIFFSGSFAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFKHVIQKP 234

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                    ++ +T++ +A  +E  +  + +P   +G+N      Y++F+A+R    +G 
Sbjct: 235 SF-------ERVKTIIMDAVEIEKEFLTQALPVKLIGMNCTLMCTYIEFVADRLFVALGF 287

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           + ++  +ENPF +M   I L+ + NFFE +V EY++   ++
Sbjct: 288 DKVYN-SENPFSFMD-FISLEGKTNFFEKKVGEYKKFGVME 326


>gi|18640102|ref|NP_570176.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus]
 gi|18448509|gb|AAL69755.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus]
          Length = 320

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 88/330 (26%), Positives = 148/330 (44%), Gaps = 29/330 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        + P+KY   W+ Y  +  + W   EV +  DL  W   + LT DE+  
Sbjct: 2   EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFASS+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +  +  KA+WA ++               +  +   +  V +   EG
Sbjct: 119 NIEKMHLFNAIETMECVKKKADWARKWI--------------SSNKVYGERVVAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  + +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSK 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +   +++ +A  +E  +    +P   +G+N     QY++F+A+R   ++G E +F    N
Sbjct: 218 EVITSIIIDAVNIEKEFLTVAIPVDLIGMNCCLMSQYIEFVADRLLTELGCEKVFNV-YN 276

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           PF +M E I L+ + NFFE RV+EYQ+   
Sbjct: 277 PFSFM-EYISLEGKTNFFERRVSEYQKMGV 305


>gi|260061082|ref|YP_003194162.1| putative ribonucleoside-diphosphate reductase small chain
           [Robiginitalea biformata HTCC2501]
 gi|88785214|gb|EAR16383.1| probable ribonucleoside-diphosphate reductase small chain
           [Robiginitalea biformata HTCC2501]
          Length = 328

 Score =  250 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 92/337 (27%), Positives = 161/337 (47%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           ++  ++ +L    D   + P+++   WE Y       W   E+ +  DL+ W   N L+D
Sbjct: 1   MSAAEEPILKENKDRFVIFPIQHHDLWEWYKKCEACFWTAEEIDLHQDLSDWN--NKLSD 58

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I 
Sbjct: 59  DEKYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLID 118

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   DE E   LF      P+I  KA+WAL++ ++                F + L  F 
Sbjct: 119 TYVKDEKEKNVLFQAIENFPAIKKKADWALKWIES--------------PSFAERLIAFA 164

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++F   F  I  L +   M G+    + I RDE +H ++ + +       N HL 
Sbjct: 165 AV-EGIFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHLH------NNHLV 217

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +++   ++  A  +E  +  E++P   +G+NA    QY++F+ +R   ++  E ++
Sbjct: 218 NKVPKERITQIITNALDIEREFITESLPVSLIGMNAKLMTQYLEFVTDRLLVELECEKVY 277

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             + NPF +M  +I L+ + NFFE RV+EYQ+   + 
Sbjct: 278 N-STNPFDFMD-MISLQGKTNFFEKRVSEYQKAGVMN 312


>gi|330949820|gb|EGH50080.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae Cit 7]
          Length = 359

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 175/296 (59%), Positives = 232/296 (78%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 64  LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVE 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
           VINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y+
Sbjct: 304 VINQIKIENPHLWDAEMKKEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYL 359


>gi|305665630|ref|YP_003861917.1| putative ribonucleoside-diphosphate reductase small chain
           [Maribacter sp. HTCC2170]
 gi|88710386|gb|EAR02618.1| probable ribonucleoside-diphosphate reductase small chain
           [Maribacter sp. HTCC2170]
          Length = 328

 Score =  249 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 156/334 (46%), Gaps = 28/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+++   WE Y       W   E+ +  DL  W +   L DDE+  
Sbjct: 6   EPILQENKDRFVIFPIQHHDLWEWYKKQEACIWTAEEIDLHQDLTDWNT--KLNDDEKYF 63

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 64  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LF      P+I  KA+WAL++ ++                F + L  F  V EG
Sbjct: 124 DKEKDILFKAIENFPAIKKKADWALKWIES--------------PSFAERLIAFAAV-EG 168

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H ++ + +          +  K  +
Sbjct: 169 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHLHKNH------IVNKVTK 222

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++ +A  +E  +  E++P   +G+N+    QY++F+ +R   ++  + ++  + N
Sbjct: 223 ERITDIIVDALNIEREFITESLPVSLIGMNSKLMTQYLEFVTDRLLVELECDKVYN-SSN 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M  +I L+ + NFFE RV+EYQ+   L  D
Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVSEYQKAGVLNKD 314


>gi|120437796|ref|YP_863482.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii
           KT0803]
 gi|117579946|emb|CAL68415.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii
           KT0803]
          Length = 325

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 90/334 (26%), Positives = 159/334 (47%), Gaps = 28/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+K+   W+ Y       W   E+ + +DL+ W   N L+ DER  
Sbjct: 5   EPILQENKDRFVIFPIKHHDIWDWYKKMEACFWTAEEIDLHEDLSDWN--NKLSADERYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           +K  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   +
Sbjct: 63  LKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKN 122

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF      P+I  KA+WAL++ ++ S                 +  + +   EG
Sbjct: 123 EKEKDQLFKAIEVFPAIKKKADWALKWIESDS---------------FAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + + NQ          +  +
Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLHNQHL------VNQVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +K R +L +A  +E  +  E++P   +G+NA    QY++F+ +R   ++  E  +  + N
Sbjct: 222 EKIREILIDALNIEREFVTESLPVSLIGMNAKLMTQYLEFVTDRLLVELDCEKEYNVS-N 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M  +I+L+ + NFFE RV+EYQ+   +  D
Sbjct: 281 PFDFMD-MINLQGKTNFFEKRVSEYQKAGVMNKD 313


>gi|225164890|ref|ZP_03727109.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
 gi|224800504|gb|EEG18881.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
          Length = 362

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 117/330 (35%), Positives = 192/330 (58%), Gaps = 3/330 (0%)

Query: 22  KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           KR++N R  +   LLPLKY WA++ Y +   NHW P ++PM  D+  W+    +TD ER 
Sbjct: 26  KRVINGRETMTFNLLPLKYQWAYDLYRTMKANHWEPEDIPMGKDIEQWRDPRAVTDQERW 85

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +I+  +G+F+++E +V +NI       ++ PE +  L R A EE +H+ +  Y+I+SLG+
Sbjct: 86  IIRMGIGYFSAAEGIVGDNIQHVTRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +  E   M+ ++P+I  K  + ++ ++ L          +  Q   +++F+F    EG  
Sbjct: 146 NPHECEAMFEDIPTIVRKNEFVVKNSRQLRR-DLDLTQPENKQLLARNMFLFGQCMEGTQ 204

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  F  ILSL R NK  GI + ++Y +RDES H+    +++  +  ENP +WT  F+++
Sbjct: 205 FYGLFGMILSLYRQNKFPGIGQMFRYTLRDESNHIEVFRNLLMDLVEENPEIWTPGFKEE 264

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENP 319
            R  + EA  LE  +  + +P   VGL       Y+ +IA+RR   +GL P+     +NP
Sbjct: 265 LRETMREAVTLEKEFIRDCLPVNAVGLAVDEFLTYIDYIADRRLEGVGLAPISATPIKNP 324

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            PW++E++D+KKE+NFFE RVTEYQ+ + L
Sbjct: 325 LPWLAEMMDIKKEQNFFEGRVTEYQKASSL 354


>gi|284039889|ref|YP_003389819.1| ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74]
 gi|283819182|gb|ADB41020.1| Ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74]
          Length = 349

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 147/332 (44%), Gaps = 29/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        L P+K+   WE Y +   + W   E+ +  D+  W S   L D ER  
Sbjct: 8   EPILEEDKGRFVLFPIKHWDIWEYYKTHEASFWTAEEIDLGQDMKDWNS---LNDGERHF 64

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+ +     +   E + +   Q   E +HS T+  +I +   D
Sbjct: 65  ISHVLAFFAASDGIVNENLAVNFLSEVQYAEAKCFYGFQVMMENIHSETYSLLIDTYIKD 124

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   L N    +P +  KA WAL++    S                 +  + + V EG
Sbjct: 125 PVEKDRLLNAIDTIPCVQKKAEWALRWIDNGS---------------FAERLIAFAVVEG 169

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   +         H+  K  +
Sbjct: 170 IFFSGSFCSIYWLKKRGMMPGLTFSNELISRDEGLHRDFACMLYT------DHIVNKLPE 223

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            +   ++  A  +E  +  + +P   +G+NA   +QY+ F+A+     +GL  ++    N
Sbjct: 224 SQIYDIIRNAVEIEQEFVADALPVSLIGMNAELMKQYIAFVADHLLVTLGLRKMYNVA-N 282

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M  +I L+ + NFFE RV EYQ+G  + 
Sbjct: 283 PFDFMD-MISLQGKTNFFEKRVGEYQRGEVMS 313


>gi|312130971|ref|YP_003998311.1| ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM
           17132]
 gi|311907517|gb|ADQ17958.1| Ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM
           17132]
          Length = 328

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 153/333 (45%), Gaps = 29/333 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        + P+K+   WE Y  A  + W   E+ +  D   W S   L D ER  
Sbjct: 10  EPLLMDDPTRFVIFPIKHNDIWEFYKKAEASFWTAEELDLSQDHKDWAS---LNDGERHF 66

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+ +    ++   E + +   Q   E +H+ T+  +I +   D
Sbjct: 67  ISHVLAFFAASDGIVNENLAVGFLSNVQYAEAKCFYGFQIMIENIHAETYSLLIDTYIKD 126

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   + N    +P +  KA+WA+++ +                 F++ L  F  V EG
Sbjct: 127 TTERQRMLNAIETIPCVKKKADWAIRWIEQ--------------GTFIERLIAFAAV-EG 171

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   +  +       +  K  +
Sbjct: 172 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHRDFACLLYTKY------IVNKLPE 225

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++  T++ +A  +E  +  + +P   +G+NAP   QY++F+A+     + L+ ++  T N
Sbjct: 226 EQVYTIIKDAVEIEKEFVSDALPVSLIGMNAPQMCQYIEFVADHLLESLNLKKVYNAT-N 284

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           PF +M  +I L+ + NFFE RV EYQ+      
Sbjct: 285 PFDFMD-LISLQGKTNFFEKRVGEYQKAGVTAD 316


>gi|1710399|sp|P50649|RIR2_PLAFG RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
           AltName: Full=Ribonucleotide reductase R2 subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|349790|gb|AAA29754.1| ribonucleotide reductase R2 subunit [Plasmodium falciparum]
          Length = 322

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 88/331 (26%), Positives = 157/331 (47%), Gaps = 27/331 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +R+LN  SD   L P+ Y   +  Y  A    W   E+    DL  ++    L ++E+  
Sbjct: 2   RRILNKESDRFTLYPILYPDVFPFYKKAEACFWTAEEIDYSSDLKDFE---KLNENEKHF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+ ++  R +   E +++   Q   E +HS T+  +I +   D
Sbjct: 59  IKHVLAFFAASDGIVLENLAVSFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF+    +P++  KA WA ++    +S                +  V     EG
Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWINDTNS--------------FAERIVANACVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I    + NK+ G+    + I RDE LH +F   + + +  + P    +   
Sbjct: 165 ILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLPEQMVQNIV 224

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +++         +E ++  E++P   +G+N+    QY++F+A+R    +G   +F +++N
Sbjct: 225 KEAG-----GVEVEKSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HSKN 278

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 279 PFNWMD-LISLQGKTNFFEKRVADYQKSGVM 308


>gi|211956300|ref|YP_002302368.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84]
 gi|115503095|gb|ABI99013.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84]
          Length = 321

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 151/332 (45%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   ++   + P+ Y   W  Y  A  + W   EV +  DL  WK    LTD+ER  
Sbjct: 2   EPLLVESNNRFVIFPIVYNDIWIMYKKAVASFWTTEEVDLSKDLLDWK---KLTDNERYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKNILAFFAASDGIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   L      +  +  KA WA ++              D +  + + L  F  V EG
Sbjct: 119 VDEKNHLLKAIDTIDCVKEKAKWAEKWI------------LDKESSYGERLVAFAAV-EG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +  Q+             
Sbjct: 166 IFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKQLL-------HPPNP 218

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            +   ++ EA  +E ++    +P   +G+N     QY++F+A+R   ++G   +FK +EN
Sbjct: 219 SRIINIIVEAVSIEKSFLTTALPVKLIGMNCELMCQYIEFVADRLLSELGCTKIFK-SEN 277

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV++YQ+   + 
Sbjct: 278 PFDFM-ESISLEGKTNFFEKRVSDYQKMGIMS 308


>gi|296116311|ref|ZP_06834927.1| ribonucleotide-diphosphate reductase subunit beta
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977130|gb|EFG83892.1| ribonucleotide-diphosphate reductase subunit beta
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 334

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 87/330 (26%), Positives = 157/330 (47%), Gaps = 20/330 (6%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L A        P +Y WA++ +L+    HW+P EVP+ DD+  W     LT+ ER ++ 
Sbjct: 18  LLTANP---VYKPFRYPWAYDAWLTQQQVHWLPEEVPLADDVKDWH--RSLTESERHLVT 72

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           +   FF  S+  V N  +    +     E    L   +  E +H   + +++ ++G+ E 
Sbjct: 73  QIFRFFTQSDVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPES 132

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E ++ + +   +  K ++  ++            +     E  + L  F    EG+  + 
Sbjct: 133 E-YSAFLKYKEMKDKYDYMQEF------------SVSNKYEIARTLAAFGAFTEGLQLFA 179

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            FA +L+  R NK+ G+ +   + +RDE+LH      +      ENP +WT++ Q   R 
Sbjct: 180 SFAILLNFPRFNKLKGMGQIVSWSVRDETLHCVSMARLFRVFVQENPEIWTQKLQDDIRQ 239

Query: 264 MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
           +  +    E A+   +   G   GL+A   ++Y++F+ANRR  Q+GL+ L+    NP PW
Sbjct: 240 ICRDIVEHEDAFIDLSFEMGPVEGLDAAQVKRYIRFVANRRLGQLGLDGLYDVATNPLPW 299

Query: 323 MSEVIDLKKEKNFFETRVTEYQQ-GAELKW 351
           + E+++  +  NFFE R TEY +   +  W
Sbjct: 300 VDEMVNAVEHANFFENRSTEYSRAATQGTW 329


>gi|89890041|ref|ZP_01201552.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria
           bacterium BBFL7]
 gi|89518314|gb|EAS20970.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria
           bacterium BBFL7]
          Length = 330

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 89/337 (26%), Positives = 157/337 (46%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +    + +L    D   + P+++   WE Y       W   E+ +Q D+  W+  N L  
Sbjct: 1   MQTTQEPILQENPDRFVIFPIQHDDLWEWYKKQQACIWTAEEIDLQVDITDWQ--NSLNS 58

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DER  IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I 
Sbjct: 59  DERYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLID 118

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D+ E   LF      P+I  KA+WA+++ ++                F + L  F 
Sbjct: 119 TYVKDDAEKDQLFRAIENFPAIKLKADWAMKWIES--------------PSFAERLIAFA 164

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            V EG++F   F  I  L +   M G+    + I RDE +H +F + + N          
Sbjct: 165 AV-EGIFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLHNHHL------V 217

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +++   ++ +A  +E  +  E++P   +G+NA    QY++F+ +R   ++  +P++
Sbjct: 218 NKVPKERITEIIVDALNIEREFITESLPASLIGMNAKLMTQYLEFVTDRLLGELECDPVY 277

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             T NPF +M  +I ++ + NFFE RV EYQ+   + 
Sbjct: 278 NVT-NPFDFMD-LIGMEGKTNFFEKRVGEYQKAGVMN 312


>gi|255724924|ref|XP_002547391.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
           tropicalis MYA-3404]
 gi|240135282|gb|EER34836.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
           tropicalis MYA-3404]
          Length = 387

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 150/333 (45%), Gaps = 27/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        + P+KY   W  Y  +  + W   E+ +  D   W+  N +  DER 
Sbjct: 63  NEPLLREDPSRRTVFPIKYPEIWTFYKKSVASFWTAEEIDLSKDFDDWE--NKMNKDERF 120

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE +     Q   E +HS T+  +I +   
Sbjct: 121 FISRVLAFFAASDGIVNENLVENFCTEVKLPEAKSVYKFQIMMENIHSETYSLLIETYFK 180

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LFN    +  I  KA+WA+++ Q            D +  F + L   +   E
Sbjct: 181 DPKEADFLFNAIDNIKYIGEKADWAIRWIQ------------DEEALFAERLVA-FAAIE 227

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE +H ++   + + ++ +         
Sbjct: 228 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLENKPDP------ 281

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  Y  + +P   +G+N     QY+++ A+R     G +  +  T 
Sbjct: 282 -SIIEKIITEAVSIEKKYFSDALPVSLLGMNCDLMCQYVEYCADRLLVAFGNDKYYNVT- 339

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I L  + NFFE RV++YQ+   ++
Sbjct: 340 NPFDFM-ENISLAGKTNFFEKRVSDYQRAGVME 371


>gi|226294144|gb|EEH49564.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides
           brasiliensis Pb18]
          Length = 325

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/313 (28%), Positives = 148/313 (47%), Gaps = 27/313 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
              W+ Y  A  + W   EV +  DL  W   N L DDER  I   L FFA+S+ +V  N
Sbjct: 9   KQIWQMYKKAEASFWTAEEVDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNEN 66

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSIT 156
           +V      +  PE R +   Q   E +HS T+  +I +   +  +   LF+    +P I 
Sbjct: 67  LVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIR 126

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
            KA+WA+++ +            D +  F Q L  F  V EG++F   FA I  L +   
Sbjct: 127 KKADWAIRWIE------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGL 173

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           M G+    + I RDE LH +F   + + ++        +   +  + ++ EA  +E  + 
Sbjct: 174 MPGLTFSNELISRDEGLHTDFACLLFSHLR-------HRPSPEAVQKIITEAVAIEQEFL 226

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336
            + +P   +G+NA    QY++F+A+R    +G + ++  + NPF +M   I L  + NFF
Sbjct: 227 TDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKVYN-STNPFDFMD-NISLTGKTNFF 284

Query: 337 ETRVTEYQQGAEL 349
           E RV +YQ+   +
Sbjct: 285 EKRVGDYQKAGVM 297


>gi|40556174|ref|NP_955259.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus]
 gi|40233999|gb|AAR83582.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus]
          Length = 323

 Score =  247 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 89/335 (26%), Positives = 147/335 (43%), Gaps = 28/335 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           +  + +L    D   + P+++G  W  Y  A  + W   EV +  DL  WK    L  +E
Sbjct: 1   MSSEPLLVNNPDRFVIFPIQHGDIWRMYKQAVASFWTVEEVDLSYDLIDWK---NLKPEE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA S+ +V  N+V    + +  PE R +   Q   E +HS  +  +I + 
Sbjct: 58  RRFISYILAFFAVSDGIVNENLVEKFCQEVQIPEARCFYGFQIAIENIHSEMYSLLIDTY 117

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  E   LF+  R +  +  K+ WAL++                D     +  V +  
Sbjct: 118 IDDNNEKKRLFSSMRTMDCVRKKSEWALKWIN--------------DSAPYGERLVAFAA 163

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +        P     
Sbjct: 164 VEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFTNYLSHKP----- 218

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             Q +   ++  A  +E  +  E +    +G+N+ S  +Y++F+++R    +G    +  
Sbjct: 219 -SQDRVYEIIDSAVSVETEFLTEALSIDLIGMNSKSMIEYIKFVSDRLLVSLGFSKKYNV 277

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ENPF +M E I L+ + NFFE RV+ YQ+   + 
Sbjct: 278 -ENPFSFM-ENISLEGKANFFEKRVSNYQKMGVMS 310


>gi|238023979|ref|YP_002908211.1| Ribonucleotide reductase subunit beta [Burkholderia glumae BGR1]
 gi|237878644|gb|ACR30976.1| Ribonucleotide reductase, beta subunit [Burkholderia glumae BGR1]
          Length = 337

 Score =  247 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 134/337 (39%), Positives = 187/337 (55%), Gaps = 5/337 (1%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           K   V+DKR++N   D+NQL P +Y WAWE +LSA  NHW P E+ M DD+  +  +  L
Sbjct: 5   KPARVEDKRVVNGAGDINQLAPFRYAWAWECFLSANKNHWTPLEISMSDDVHDFHHR--L 62

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           +  E+ + +  L +  +S+ L   NI LA+   ++ PE + Y  RQ +EEA+H+ T+Q+ 
Sbjct: 63  SPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHC 122

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           I SLGLD+ E++N YR VP I AK   + +    +  P      +D   EF      F  
Sbjct: 123 IESLGLDQQEIYNRYRVVPQIHAKIALSNRRLNRMLEPGLDLHDRDTLHEFALAYLFFAA 182

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           VFEG WFY GF+ + +L R   M   A+Q+QYIMRDE LH  FGI VI Q+  E      
Sbjct: 183 VFEGTWFYNGFSPVFALQRRGLMKATAQQFQYIMRDEVLHCGFGIRVIRQLLEEE---HL 239

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           +      + +  EA   E AYA   +    +G +A    +  +FIANRR  Q+ +   F 
Sbjct: 240 RLDPHAVQQIWEEAEAAERAYAQYILRDPILGYSAELHCEQFRFIANRRATQLSMPAPFP 299

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
              N  PW+ E  +L+KEKNFFETRVT+YQ G  L W
Sbjct: 300 GATNALPWLDEQANLRKEKNFFETRVTDYQSGGALDW 336


>gi|302536805|ref|ZP_07289147.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp.
           C]
 gi|302445700|gb|EFL17516.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp.
           C]
          Length = 356

 Score =  247 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 103/323 (31%), Positives = 174/323 (53%), Gaps = 9/323 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D+A       LT  E+ MI R + FFA+ 
Sbjct: 35  TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTPAEQHMIGRLVAFFATG 91

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F+  
Sbjct: 92  DSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAV 151

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E+PSI  KA +  ++  ++        T    + FL +L  F    EG++FY  FA + 
Sbjct: 152 EEIPSIREKAQFCFKWMDSVEKIE-RLETAADRRRFLLNLICFAACIEGLFFYGAFAYVY 210

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H+NF  +V++ ++ E P L+    QQ+   ML EA 
Sbjct: 211 WFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKEAV 270

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +  +    G  G+N  S  +Y++ +A++R  ++G  P++  ++NPF +M E+  +
Sbjct: 271 EAELQFGRDLCGDGLPGMNTDSMREYLECVADQRLVRLGFPPVYG-SQNPFSFM-ELQGV 328

Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
           ++  NFFE R + YQ   E   D
Sbjct: 329 QELTNFFERRPSAYQVAVEGTVD 351


>gi|295670491|ref|XP_002795793.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides
           brasiliensis Pb01]
 gi|226284878|gb|EEH40444.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides
           brasiliensis Pb01]
          Length = 325

 Score =  247 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/313 (28%), Positives = 148/313 (47%), Gaps = 27/313 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
              W+ Y  A  + W   E+ +  DL  W   N L DDER  I   L FFA+S+ +V  N
Sbjct: 9   KQIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNEN 66

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSIT 156
           +V      +  PE R +   Q   E +HS T+  +I +   +  +   LF+    +P I 
Sbjct: 67  LVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIR 126

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
            KA+WA+++ +            D +  F Q L  F  V EG++F   FA I  L +   
Sbjct: 127 KKADWAIRWIE------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGL 173

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           M G+    + I RDE LH +F   + + ++        +   +  + ++ EA  +E  + 
Sbjct: 174 MPGLTFSNELISRDEGLHTDFACLLFSHLR-------HRPSPEAVQKIITEAVAIEQEFL 226

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336
            + +P   +G+NA    QY++F+A+R    +G + ++  + NPF +M   I L  + NFF
Sbjct: 227 TDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKVYN-STNPFDFMD-NISLTGKTNFF 284

Query: 337 ETRVTEYQQGAEL 349
           E RV +YQ+   +
Sbjct: 285 EKRVGDYQKAGVM 297


>gi|62637405|ref|YP_227403.1| Ribonucleotide reductase small subunit [Deerpox virus W-848-83]
 gi|115503265|gb|ABI99183.1| ribonucleotide reductase small subunit [Deerpox virus W-848-83]
          Length = 321

 Score =  247 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 152/332 (45%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   ++   + P+ Y   W  Y  A  + W   EV +  DL  WK    LTD+ER  
Sbjct: 2   EPLLVESNNRFVIFPIIYNDIWIMYKKAIASFWTTEEVDLSKDLLDWK---KLTDNERYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKNILAFFAASDGIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   L      +  I  KA WA ++              D +  + + L  F  V EG
Sbjct: 119 VDEKNHLLKAIDTIDCIKEKAKWAEKWI------------LDKESTYGERLVAFAAV-EG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +  Q+             
Sbjct: 166 IFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKQLL-------YPPST 218

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            +   ++ EA  +E ++  + +P   +G+N     QY++F+A+R   ++G   +FK +EN
Sbjct: 219 SRIINIIVEAVSIEKSFLTKALPVKLIGMNCELMCQYIEFVADRLLSELGCNKIFK-SEN 277

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV++YQ+   + 
Sbjct: 278 PFDFM-ESISLEGKTNFFEKRVSDYQKMGIMS 308


>gi|17551968|ref|NP_497821.1| RiboNucleotide Reductase family member (rnr-2) [Caenorhabditis
           elegans]
 gi|1172941|sp|P42170|RIR2_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|3873950|emb|CAA84688.1| C. elegans protein C03C10.3, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 381

 Score =  247 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 97/352 (27%), Positives = 160/352 (45%), Gaps = 29/352 (8%)

Query: 2   ANNTGLSPIQAGEKRVNVD-DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
                        +   +D D+ ML    +   + PLK+   W  Y  A  + W   EV 
Sbjct: 41  TKAASAEETNNESEVNELDADEPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVD 100

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D+  W+    +  DE+  I R L FFA+S+ +V  N+       +   E R +   Q
Sbjct: 101 LGKDMNDWE---KMNGDEQYFISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQ 157

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS  +  +I +   DE E   LFN   E   I  KA+WAL++            
Sbjct: 158 IAIENIHSEMYSKLIETYIRDETERNTLFNAVDEFEFIKKKADWALRWI----------- 206

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
             D    F + L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 207 -SDKKASFAERLIAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDF 264

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              + ++++ +         QQ+   ++ +A  +E  +  E +P   +G+N     QY++
Sbjct: 265 ACLLYSKLQKKL-------TQQRIYDIIKDAVAIEQEFLTEALPVDMIGMNCRLMSQYIE 317

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           F+A+    ++G + L+K ++NPF +M E I +  + NFFE RV+EYQ+   +
Sbjct: 318 FVADHLLVELGCDKLYK-SKNPFDFM-ENISIDGKTNFFEKRVSEYQRPGVM 367


>gi|73979723|ref|XP_856346.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain
           (Ribonucleotide reductase small chain) isoform 3 [Canis
           familiaris]
          Length = 381

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 147/337 (43%), Gaps = 41/337 (12%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
            + +++ +L        + P++Y   W+ Y  A  + W   EV +  D+  W+S   L  
Sbjct: 70  PSAEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKP 126

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I 
Sbjct: 127 EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLID 186

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LFN    +P +  KA+WAL++                 +    +  V +
Sbjct: 187 TYIKDSKEREFLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVAF 233

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +   +        
Sbjct: 234 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------- 286

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +Q+ + ++  A  +E  +  E +P   +G+N    +QY++F+              
Sbjct: 287 HKPSEQRVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVF------------- 333

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
              ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 334 -RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 368


>gi|38229183|ref|NP_938276.1| 20L [Yaba monkey tumor virus]
 gi|38000454|gb|AAR07377.1| 20L [Yaba monkey tumor virus]
          Length = 325

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/337 (26%), Positives = 154/337 (45%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           ++V  + +L   +    + P+ Y   W  Y  A  + W   EV +  D   W     L++
Sbjct: 1   MDVVSEPILRQTTGRYVVFPIVYKDIWMMYKKAVASFWTVEEVDLSKDFPDW---LKLSE 57

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+  IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I 
Sbjct: 58  NEKKFIKHILAFFAASDGIVNENLAERFYSEVQVSEARCFYGFQIAMENIHSEMYSLLID 117

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +  LD  E   LFN    +  +  KANWA ++ ++                   +  + +
Sbjct: 118 TYILDSKEKNYLFNAIENMNCVKQKANWARKWIES-------------KNSTYGERLIAF 164

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  + +   M G+    + I RDE LH +F   +   +        
Sbjct: 165 AAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACMMFKHLSN------ 218

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +   R ++ EA  +E  +  E MP   +G+N    +QY++F+A+R   ++G +  +
Sbjct: 219 -PPLENVIRDIVIEAVDIEKNFLTEAMPVKLIGMNCDLMKQYIEFVADRLLLELGCKKYY 277

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ++NPF +M E I L+ + NFFE RV+EYQ+ + + 
Sbjct: 278 -CSKNPFDFM-ENISLEGKTNFFEKRVSEYQKMSVMS 312


>gi|297157411|gb|ADI07123.1| ribonucleoside-diphosphate reductase [Streptomyces bingchenggensis
           BCW-1]
          Length = 340

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 105/325 (32%), Positives = 178/325 (54%), Gaps = 11/325 (3%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +++Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ 
Sbjct: 19  TLRPMRYPDFYDRYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHLIGRLVAFFATG 75

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 76  DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 135

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA +  ++  ++        TKD  + FL +L  F    EG++FY  FA + 
Sbjct: 136 ENIPSIREKAEFCFRWIDSVDKID-RLETKDERRRFLLNLICFAACIEGLFFYGAFAYVY 194

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H+NF   V++ ++ E P L+  E QQ+   ML EA 
Sbjct: 195 WFRSRGLLHGLATGTNWVFRDETMHMNFAFQVVDTVREEEPELFDDELQQQVTDMLREAV 254

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +A +   +G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+ ++
Sbjct: 255 EAELQFARDLCGEGLPGMNTESMRQYLECVADQRLARLGFAPVYG-SENPFSFM-ELQNV 312

Query: 330 KKEKNFFETRVTEYQQG--AELKWD 352
           ++  NFFE R + YQ      + +D
Sbjct: 313 QELTNFFERRASAYQVAVEGSVSFD 337


>gi|332519182|ref|ZP_08395649.1| Ribonucleoside-diphosphate reductase [Lacinutrix algicola 5H-3-7-4]
 gi|332045030|gb|EGI81223.1| Ribonucleoside-diphosphate reductase [Lacinutrix algicola 5H-3-7-4]
          Length = 327

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 96/332 (28%), Positives = 156/332 (46%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+++   WE Y  +  + W   E+ +  DL  W S   LTDDER  
Sbjct: 6   EPILQENKDRFVIFPIQHHDLWEWYKKSEASMWTAEEIDLHQDLTDWSS--KLTDDERYF 63

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 64  IKHVLAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LFN     P+I  KA WAL++ ++                F + L  F  V EG
Sbjct: 124 EKEKAMLFNAIETFPAIKKKAEWALKWIES--------------PSFAERLIAFAAV-EG 168

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + +             K  +
Sbjct: 169 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLHEHHL------INKVPK 222

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R +L +A  +E  +  E++P   +G+N+    QY++F+ +     +G E  +  T N
Sbjct: 223 ERIREILVDALNIEREFITESLPVSLIGMNSKLMSQYLEFVTDGLLQDLGCEKEYG-TAN 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M  +I L+ + NFFE RV+EYQ+   L 
Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVSEYQKAGVLN 312


>gi|296536499|ref|ZP_06898590.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas
           cervicalis ATCC 49957]
 gi|296263178|gb|EFH09712.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas
           cervicalis ATCC 49957]
          Length = 343

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 85/331 (25%), Positives = 155/331 (46%), Gaps = 20/331 (6%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L A        P +Y WA++ +++    HW+P EVPM DD+  W+    LT+ ER ++ 
Sbjct: 12  LLTANP---VYKPFRYPWAYDAWMTQQRVHWLPEEVPMADDVKDWQK--NLTESERNLLT 66

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           +   FF  ++  V N  +    +     E    L   +  E +H   + +++ ++G+ E 
Sbjct: 67  QIFRFFTQADVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPET 126

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E +  + +   +  K ++   +            + +   E  + L  F    EG+  + 
Sbjct: 127 E-YQAFLKYKEMKDKYDYMQSF------------SVENKTEIAKTLAAFGAFTEGLQLFA 173

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            FA +++  R NKM G+ +   + +RDE+LH    I +      ENP +WT++ +     
Sbjct: 174 SFAILMNFPRFNKMKGMGQIVSWSVRDETLHCLSVIRLFRTFIQENPEIWTEQLKADLVE 233

Query: 264 MLHEATLLEIAYAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
           +       E A+        G  G+     +QY++FIA+RR  Q+GLEP +   +NP PW
Sbjct: 234 ICTTIVEHEDAFIDLAFELGGVQGMEPEDVKQYIRFIADRRLQQLGLEPHYGTEKNPLPW 293

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
           + E+++  +  NFFE R TEY + +    W+
Sbjct: 294 LDEILNAVEHMNFFEGRATEYSKASTAGTWE 324


>gi|114327552|ref|YP_744709.1| ribonucleotide-diphosphate reductase subunit beta [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315726|gb|ABI61786.1| ribonucleoside-diphosphate reductase beta chain [Granulibacter
           bethesdensis CGDNIH1]
          Length = 339

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 92/354 (25%), Positives = 164/354 (46%), Gaps = 21/354 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M + T        E+ V V    +L          P +Y WA+E +L     HW+P EVP
Sbjct: 1   MTDETIQGAAPQAEQDVPVR-FDLLTENP---VYKPFRYPWAYEAWLVQQQVHWLPEEVP 56

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + DD+  W     L + E+ ++ +   FF  S+  V N  +    R     E    L   
Sbjct: 57  LADDVKDWH--RNLNEVEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAF 114

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +  E +H   + +++ ++G+ E E ++ + +   +  K ++   +            + D
Sbjct: 115 SNIETIHIAAYSHLLDTIGMPEVE-YSAFLKYKEMKDKYDYMHSF------------SVD 161

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           + +E  + L  F    EG+  +  FA +L+  R  K+ G+ +   + +RDE+LH    I 
Sbjct: 162 SKREIAKTLAAFGAFTEGLQLFASFAILLNFPRFGKLKGMGQIVSWSVRDETLHCLSIIK 221

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
           + +    EN  +WT++ +Q+ R +       E A+       G   GL+A   + Y+++I
Sbjct: 222 LFHVFIDENREIWTEDLRQEIRQICATIVEHEDAFIDLAFELGSVEGLDAAQVKSYIRYI 281

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
           A+RR  Q+GLEPLF    NP PW+ ++++  +  NFFE R TEY + +    W+
Sbjct: 282 ADRRLIQLGLEPLFHVERNPLPWIDDMLNAVEHANFFENRATEYSRASTVGTWE 335


>gi|319953269|ref|YP_004164536.1| ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM
           14237]
 gi|319421929|gb|ADV49038.1| Ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM
           14237]
          Length = 326

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 91/334 (27%), Positives = 157/334 (47%), Gaps = 28/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+++   WE Y       W   E+ + +D   W   N L DDER  
Sbjct: 5   EPILQENKDRFVIFPIQHNDLWEWYKKQEACIWTAEEIDLSEDANDWN--NKLNDDERYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF      P+I  KA+WAL++  +                F + L  F  V EG
Sbjct: 123 EKEKTVLFQAIENFPAIKKKADWALKWIDS--------------PSFAERLIAFAAV-EG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + +       N H+  +  +
Sbjct: 168 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLH------NKHIINQVPK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   +L +A  +E  +  E++P   +G+N+    QY++F+ +R   ++  + ++  + N
Sbjct: 222 ERITEILVDALNIEREFITESLPASLIGMNSKLMTQYLEFVTDRLLVELECDKVYN-STN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M  +I ++ + NFFE RV+EYQ+   L  D
Sbjct: 281 PFDFMD-MIGMEGKTNFFEKRVSEYQKAGVLNSD 313


>gi|312075738|ref|XP_003140550.1| ribonucleotide reductase M2 B [Loa loa]
 gi|307764288|gb|EFO23522.1| ribonucleotide reductase M2 B [Loa loa]
          Length = 350

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 89/336 (26%), Positives = 150/336 (44%), Gaps = 37/336 (11%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
             R   + + +L    +   + P+K+   W+ Y  A  + W   EV +  D   W+    
Sbjct: 38  TSRCESNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDWE---N 94

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L D ER  I R L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS     
Sbjct: 95  LNDGERHFISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENVHSEM--- 151

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
                      LFN   E   +  KA+WAL +   + +P               +  + +
Sbjct: 152 ---------SLLFNAIYEFEFVKKKADWALCWIADIKAP-------------YAERLIAF 189

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +         ++ 
Sbjct: 190 AAVEGIFFSGSFAAIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYT-------YIK 242

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K  +++   ++ EA  +E  Y  E +P   +G+N     QY++++A+    ++    ++
Sbjct: 243 NKPSEERIYQIIREAVDIEKEYLTEALPVDLIGINCKLMCQYIEYVADHLLTELHCAKMY 302

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            Y++NPF +M E I ++ + NFFE RV+EYQ+   L
Sbjct: 303 -YSDNPFDFM-ERISIEAKTNFFEKRVSEYQKAGVL 336


>gi|12085003|ref|NP_073405.1| 20L protein [Yaba-like disease virus]
 gi|56404692|sp|Q9DHU2|RIR2_YLDV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|12056179|emb|CAC21258.1| 20L protein [Yaba-like disease virus]
          Length = 325

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 89/337 (26%), Positives = 154/337 (45%), Gaps = 28/337 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +N   + +L    +   + P+ Y   W+ Y  A  + W   EV +  D + W     L+D
Sbjct: 1   MNTSCEPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDW---LKLSD 57

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+  IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I 
Sbjct: 58  NEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLID 117

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +  LD  E   LFN    +  +  KANWA ++ ++                   +  V +
Sbjct: 118 TYILDSKEKNYLFNAIENMNCVKQKANWAKKWIES-------------KNRTYGERLVAF 164

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  + +   M G+    + I RDE LH +F   +   +        
Sbjct: 165 AAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACIMFKHLLN------ 218

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                   R ++ EA  +E  +  E +P   +G+N    +QY++F+A+R   ++G +  +
Sbjct: 219 -PPLNSVVRDIIIEAVNIEKNFLTEAIPVKLIGMNCDLMKQYIEFVADRLLLELGCDKYY 277

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ++NPF +M E I L+ + NFFE RV+EYQ+ + + 
Sbjct: 278 -CSKNPFDFM-ENISLEGKTNFFEKRVSEYQKMSVMS 312


>gi|303272255|ref|XP_003055489.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463463|gb|EEH60741.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 322

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 91/329 (27%), Positives = 153/329 (46%), Gaps = 29/329 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           ML    D   L P+K+   W+ Y  A  + W   E+ +  DL  W     LT+ E+  I 
Sbjct: 1   MLQDNEDRFSLFPVKHVEVWKMYKQAVASFWNAEEIDLSTDLRDW---GNLTESEQHFIS 57

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--- 140
             L FFA+S+ +V  N+ L   + +  PE R +   Q   E +HS T+  ++ +      
Sbjct: 58  HVLAFFAASDGIVLENLGLRFLKDVQMPEARAFYGFQLAMENIHSETYGLLLETYIKDSV 117

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
               L      VP++  KA WAL++ Q+              + F + L   +   EG++
Sbjct: 118 QRKHLMRAIHTVPTVGRKAQWALRWIQS-------------SECFAERLIA-FACVEGIF 163

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + +K            ++
Sbjct: 164 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSMLKHPLEP-------ER 216

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + ++ +A  +E  +  + +    VG+NA    +Y++F+A+R   Q+G++ ++  T NPF
Sbjct: 217 LQEIVKDAVEIEKEFVCDALSCALVGMNADLMSEYIEFVADRLLVQLGVDKVWN-TPNPF 275

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            WM E I L+ + NFFE RV EYQ+   +
Sbjct: 276 DWM-ESISLQGKTNFFERRVGEYQRNGVM 303


>gi|302554045|ref|ZP_07306387.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471663|gb|EFL34756.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 341

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 103/323 (31%), Positives = 176/323 (54%), Gaps = 9/323 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ 
Sbjct: 20  TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPAEQHLIGRLVAFFATG 76

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 77  DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAV 136

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA++  ++  ++        T+   + FL +L  F    EG++FY  FA + 
Sbjct: 137 ENIPSIREKASFCFKWMDSVEKLD-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVY 195

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H++F  DV++ ++ E P L+  + +Q+   ML EA 
Sbjct: 196 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLRQEVTDMLREAV 255

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+  +
Sbjct: 256 EAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQGV 313

Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
           ++  NFFE R + YQ   E   D
Sbjct: 314 QELTNFFERRPSAYQVAVEGTVD 336


>gi|120556760|ref|YP_961111.1| ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8]
 gi|120326609|gb|ABM20924.1| Ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8]
          Length = 352

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 137/340 (40%), Positives = 193/340 (56%), Gaps = 5/340 (1%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            G   VNVDDKR++N  +D+NQL P KY WAWE +++A  NHW P +V M  D+  +  +
Sbjct: 18  GGPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHDYHHR 77

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             LT  E+ + +  L +  +S+ L   NI LA+   +S PE + Y  RQ +EEA+H+ T+
Sbjct: 78  --LTPAEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTY 135

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           Q+ I +L LD+ E++N YR VP I  K   A +               D  Q+F+     
Sbjct: 136 QHCIETLNLDQSEIYNRYRVVPEINGKIQLANRRLDAAMRSDMNLRNPDELQDFVMSYLF 195

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           F  VFEG WFY GF+ I +L R   M G  EQ QYI+RDE++H +FG+ V+NQI  E   
Sbjct: 196 FAAVFEGCWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVVNQILEEEKI 255

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
                  +  R M  E+   E+AYA+  +    +G +A    +  +F+ANRR   +GLE 
Sbjct: 256 TLDP---KAVREMWDESEAAEMAYANYVLRDPILGYSAEYHSEQFRFVANRRARTVGLEE 312

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
            F   +N  PW+ E   L+KEKNFFETRV EYQ GA+L+W
Sbjct: 313 PFPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352


>gi|239982206|ref|ZP_04704730.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           albus J1074]
 gi|291454052|ref|ZP_06593442.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces
           albus J1074]
 gi|291357001|gb|EFE83903.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces
           albus J1074]
          Length = 350

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 100/325 (30%), Positives = 178/325 (54%), Gaps = 11/325 (3%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ 
Sbjct: 29  TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHLIGRLVAFFATG 85

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 86  DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPADRADAFAAV 145

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA +  ++  ++        ++   ++FL +L  F    EG++FY  FA + 
Sbjct: 146 ENIPSIREKAEFCFRWMDSVDKLD-QLESQADRRKFLLNLICFAACIEGLFFYGAFAYVY 204

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H++F  DV++ ++ E P L+  + Q++   ML EA 
Sbjct: 205 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLQEQVVAMLKEAV 264

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +A +    G  G+N  S  +Y++ +A++R  ++G  P++  ++NPF +M E+  +
Sbjct: 265 EAELQFARDLCGDGLPGMNTESMREYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGV 322

Query: 330 KKEKNFFETRVTEYQQG--AELKWD 352
           ++  NFFE RV+ YQ      + +D
Sbjct: 323 QELTNFFERRVSAYQVAVEGTVSFD 347


>gi|325286576|ref|YP_004262366.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489]
 gi|324322030|gb|ADY29495.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489]
          Length = 328

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 91/332 (27%), Positives = 156/332 (46%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+K+   W+ Y     + W   E+ +  DL  WK  N L DDER  
Sbjct: 6   EPILEKNEDRFVIFPIKHNDLWDWYKKCEASFWTAEEIDLHADLDDWK--NKLNDDERYF 63

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 64  IKHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF+     P+I  KA+WAL++ ++                F + L  F  V EG
Sbjct: 124 EKEKDILFHALENFPAIRKKADWALKWIES--------------PSFAERLIAFAAV-EG 168

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H ++ + + N           K  +
Sbjct: 169 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHLHNHHL------INKVPK 222

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   +L +A  +E  +  E++P   +G+N+    QY++F+ +R   ++  + ++  + N
Sbjct: 223 ERITEILVDALDIEREFITESLPVSLIGMNSKLMTQYLEFVTDRLLVELNCDKVYN-STN 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M  +I L+ + NFFE RV EYQ+     
Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVAEYQKSGVAN 312


>gi|21492474|ref|NP_659593.1| Ribonucleotide reductase, small subunit [Sheeppox virus]
          Length = 321

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 92/332 (27%), Positives = 148/332 (44%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+ Y   W  Y  A  + W   EV +  DL+ WK    L ++E+  
Sbjct: 2   EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLSDWK---KLNNEEQYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +    
Sbjct: 59  IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +  I  K+ WA ++              +    F + L  F  V EG
Sbjct: 119 TKEKEYLFNAIETMDFIKKKSEWARKWI------------SNKKASFGERLIAFAAV-EG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +K            
Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLK-------YPPSN 218

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++ EA  +E  +    +P   +G+N     QY++FIA+R   ++G + +F  + N
Sbjct: 219 EIITIIIKEAVSIEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVF-MSIN 277

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV+EYQ+   + 
Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308


>gi|29829569|ref|NP_824203.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           avermitilis MA-4680]
 gi|29606677|dbj|BAC70738.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptomyces avermitilis MA-4680]
          Length = 338

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 105/323 (32%), Positives = 173/323 (53%), Gaps = 9/323 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D+A       LT  E+ +I R + FFA+ 
Sbjct: 17  TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTPAEQHLIGRLVAFFATG 73

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 74  DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAV 133

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA +  ++   +        TK   + FL +L  F    EG++FY  FA + 
Sbjct: 134 ENIPSIREKAEFCFKWINEVEKLD-RLETKADRRRFLLNLICFAACIEGLFFYGAFAYVY 192

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H++F  +V++ ++ E P L+  E QQ+   ML EA 
Sbjct: 193 WFRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPELFDDELQQQVTDMLREAV 252

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +  +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+  +
Sbjct: 253 EAELQFGRDLCGDGLPGMNTESMRQYLECVADQRLQRLGFAPVYG-SENPFSFM-ELQGV 310

Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
           ++  NFFE R + YQ   E   D
Sbjct: 311 QELTNFFERRASAYQVAVEGTVD 333


>gi|323452425|gb|EGB08299.1| hypothetical protein AURANDRAFT_59025 [Aureococcus anophagefferens]
          Length = 319

 Score =  245 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 86/326 (26%), Positives = 148/326 (45%), Gaps = 27/326 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           ML   S    L P+++   W+ Y  A  + W   EV +  D+  W +   L D ER  IK
Sbjct: 1   MLAVNSLRFVLFPIEHDDIWQMYKQAEASFWTAEEVDLCHDVQHWDT--KLNDKERHFIK 58

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG---L 140
             L FFA+S+ +V  N+       +  PE R +   Q   E +HS  +  +I +      
Sbjct: 59  HVLAFFAASDGIVNENLAQNFATEVQWPEARCFYGFQIAIENIHSEVYSLLIDTYIRDAQ 118

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E       +P +  KA WAL++              D D     +  + +   EG++
Sbjct: 119 KKHECLTAIDTMPCVAEKAQWALRW-------------CDPDHASFTERLLAFAAVEGIF 165

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  +  L +   M G++   + I RDE LH +F   + ++++ +   +        
Sbjct: 166 FSGSFCAVFWLKKRGLMPGLSFSNELIARDEGLHCDFACLLYSKLRKKLSDVQ------- 218

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
             +++  A  +E ++    +P   +G+N+ S  +Y++F A+R   ++G   L+  T NPF
Sbjct: 219 VASIVGAAVDIEKSFVVSALPVELIGMNSKSMCKYIEFCADRLLLELGYSTLYGAT-NPF 277

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
            WM E+I L+ + NFFE RV EY + 
Sbjct: 278 DWM-ELISLQGKTNFFEKRVGEYAKA 302


>gi|281204152|gb|EFA78348.1| ribonucleotide reductase-related protein [Polysphondylium pallidum
           PN500]
          Length = 323

 Score =  245 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 28/333 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + ++ +L    D   L P+K+   W+ Y  A  + W   E+ +  DL  W+  + L D+E
Sbjct: 2   MQEEPILKENKDRFVLFPIKHQDVWKFYKKAEASFWTAEEIDLAPDLRDWQ--DKLNDNE 59

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+       +  PE R +   Q   E +HS T+  +I + 
Sbjct: 60  RYFISNVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAMENIHSETYSLLIDTY 119

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             +  E   LFN    +P +  KANWAL++    +S                +  V +  
Sbjct: 120 IQNPAEKTKLFNAIETIPCVQKKANWALKWISNSTS--------------FAERLVAFAA 165

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   F  I  L + N M G+    ++I RDE LH  F   + +++  +       
Sbjct: 166 VEGIFFSGSFCSIFWLKKRNLMSGLCSSNEFISRDEGLHCQFACLLYSKLVNKLDA---- 221

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
              +   +++ +A   E  +  +++P   +G+N     +Y++F+A+     +G + ++  
Sbjct: 222 ---KTIESIIRDAVDCEKEFITQSLPVDLIGMNNRLMSEYIEFVADHLIVALGYKKIYN- 277

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           T NPF WM E+I +    NFFE R T Y     
Sbjct: 278 TANPFDWM-ELISIDTRTNFFEHRNTSYTIPGV 309


>gi|157939640|ref|YP_001497012.1| ribonucleotide reductase [Tanapox virus]
 gi|146746356|gb|ABQ43492.1| ribonucleotide reductase [Tanapox virus]
 gi|146746512|gb|ABQ43647.1| ribonucleotide reductase [Tanapox virus]
          Length = 325

 Score =  245 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 151/332 (45%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P+ Y   W+ Y  A  + W   EV +  D + W     L+D+E+  
Sbjct: 6   EPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDW---LKLSDNEKNF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +  LD
Sbjct: 63  IKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLIDTYILD 122

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +  +  KANWA ++ ++                   +  V +   EG
Sbjct: 123 SKEKNYLFNAIENMNCVKQKANWAKKWIES-------------KNRTYGERLVAFAAVEG 169

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  + +   M G+    + I RDE LH +F   +   +             
Sbjct: 170 IFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACIMFKHLLN-------PPLN 222

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
              R ++ EA  +E  +  E +P   +G+N    +QY++F+A+R   ++G    +  ++N
Sbjct: 223 SVVRDIIIEAVNIEKNFLTEAIPVKLIGMNCDLMKQYIEFVADRLLLELGCNKYY-CSKN 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV+EYQ+ + + 
Sbjct: 282 PFDFM-ENISLEGKTNFFEKRVSEYQKMSVMS 312


>gi|268575178|ref|XP_002642568.1| C. briggsae CBR-RNR-2 protein [Caenorhabditis briggsae]
 gi|187023588|emb|CAP37241.1| CBR-RNR-2 protein [Caenorhabditis briggsae AF16]
          Length = 365

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 92/340 (27%), Positives = 156/340 (45%), Gaps = 28/340 (8%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
            +      D+ +L    +   + PL++   W+ Y  A  + W   EV +  D+  W+   
Sbjct: 37  PKGNALDADEPLLQDLDNRFVIFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWE--- 93

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            +  DE+  I R L FFA+S+ +V  N+       +   E R +   Q   E +HS  + 
Sbjct: 94  KMNGDEQYFISRVLAFFAASDGIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEMYS 153

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +I +   DE E   LFN   E   I  KA+WAL++              D    F + L
Sbjct: 154 KLIETYIRDEKERMKLFNAIFEFEFIKKKADWALRWI------------SDTKASFAERL 201

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
             F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + ++ + 
Sbjct: 202 IAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYSMLQNKL 260

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                   Q++   ++ +A  +E  +  E +P   +G+N     QY++F+A+    ++G 
Sbjct: 261 S-------QERIFEIIRDAVAIEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLQELGC 313

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           + L+   +NPF +M E I +  + NFFE RV+EYQ+   +
Sbjct: 314 DKLYNV-KNPFDFM-ENISIDGKTNFFEKRVSEYQRPGVM 351


>gi|326916502|ref|XP_003204546.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Meleagris gallopavo]
          Length = 339

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 90/331 (27%), Positives = 152/331 (45%), Gaps = 29/331 (8%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
            +L      +   P++Y   W  Y  A  + W   EV +  DL  W+S   L  +E+  I
Sbjct: 22  PLLRENPGGSS-FPIQYHDIWRMYKKAEASFWTAEEVDLSKDLQHWES---LKPEEKYFI 77

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
              L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +   D 
Sbjct: 78  SHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDS 137

Query: 143 GE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            E   LFN    +P +  KA+WA+++                 +    +  V +   EG+
Sbjct: 138 KEREFLFNAIETLPCVKKKADWAIRWIG-------------DKKATYGERVVAFAAVEGI 184

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           +F   FA I  L +   M G+    + I RDE LH +F   +   +         K  ++
Sbjct: 185 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLIR-------KPSEE 237

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
           + + ++  A L+E  +  E +P   +G+N    +QY++F+A+R   ++G   ++K  ENP
Sbjct: 238 RVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFRKIYKV-ENP 296

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 297 FDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 326


>gi|58040422|ref|YP_192386.1| ribonucleotide-diphosphate reductase subunit beta [Gluconobacter
           oxydans 621H]
 gi|58002836|gb|AAW61730.1| Ribonucleoside-diphosphate reductase beta chain [Gluconobacter
           oxydans 621H]
          Length = 339

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/322 (25%), Positives = 155/322 (48%), Gaps = 17/322 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA++ +L+    HW+P EVP+ DD+  W     LT+ ER ++ +   FF  S
Sbjct: 24  VYKPFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWH--RTLTEAERHLVTQIFRFFTQS 81

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V +  +    +     E    L   +  E +H   + +++ ++G+ E E ++ + + 
Sbjct: 82  DVEVNSAYMKYYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETE-YSAFLKY 140

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++   +              D  +E  + +  F    EG+  +  FA +L+  
Sbjct: 141 KEMKDKYDFMQSF------------NIDNKREIAKTMAAFGAFMEGLQLFASFAILLNFP 188

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NK+ G+ +   + +RDE+LH    I +      EN  +WT EF+++   +       E
Sbjct: 189 RFNKLKGMGQIVSWSVRDETLHCLSMIRLFRTFVRENSEIWTPEFREELTQICRTTVEHE 248

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G   G+++   ++Y++FIA+RR  Q+GL+P++    NP PW+ ++++  +
Sbjct: 249 DAFIDLCFEMGPVEGMSSEDVKRYIRFIADRRLTQLGLDPVYGQESNPLPWIDDMLNAVE 308

Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
             NFFE R TEY + +    W+
Sbjct: 309 HANFFENRSTEYSRASTSGTWE 330


>gi|291412327|ref|XP_002722439.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Oryctolagus
           cuniculus]
          Length = 400

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/328 (26%), Positives = 150/328 (45%), Gaps = 28/328 (8%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                   +L ++    W +      + W   EV +  D+  W+    L ++ER  I   
Sbjct: 85  RENPCRFSILTIESYGIWTRNKKGEASFWTAEEVDLSKDIQHWE---ALKEEERYFISHV 141

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE- 144
           L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +   D  E 
Sbjct: 142 LAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKER 201

Query: 145 --LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
             LFN    +P +  KA+WAL++              D +  + + +  F  V EG++F 
Sbjct: 202 EFLFNAIETMPCVKKKADWALRWI------------GDKEATYGERVVAFAAV-EGIFFS 248

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
             FA I  L +   M G+    + I RDE LH +F   +   +         K  +Q+ +
Sbjct: 249 GSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HKPSEQRVQ 301

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+  ENPF +
Sbjct: 302 EIIVNAVRIEQEFLTEALPVKLIGMNCALMKQYIEFVADRLLLELGFSKVFRV-ENPFDF 360

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGAELK 350
           M E I L+ + NFFE RV EYQ+   + 
Sbjct: 361 M-ENISLEGKTNFFEKRVGEYQRMGVMS 387


>gi|108763495|ref|YP_633213.1| ribonucleoside-diphosphate reductase subunit beta [Myxococcus
           xanthus DK 1622]
 gi|108467375|gb|ABF92560.1| ribonucleoside-diphosphate reductase, beta subunit [Myxococcus
           xanthus DK 1622]
          Length = 349

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 105/340 (30%), Positives = 178/340 (52%), Gaps = 9/340 (2%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++   +     +  +LN   ++  L P+ Y   +E Y +A  N W   EV    DL   +
Sbjct: 1   METPRRSARSTEAMLLNPGLNL-TLRPMAYPQFFEMYRNAIKNTWTVEEVDFSTDLVDLR 59

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
           S   +TD ER +I R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H  
Sbjct: 60  S--KMTDAERHLIHRLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQ 117

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  ++ +   D  E    F     +PSI  KA + +++  ++     T  TK   ++FL
Sbjct: 118 FYLTLLDTYVPDPAERAMAFAAVDNIPSIQRKAQFCMKWMDSIQGLD-TLQTKAHRRQFL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
            +L  F    EG++F+  FA +  L     + G+A    ++ RDES H+ F  + I   +
Sbjct: 177 LNLICFAGCIEGLFFFAAFAYVYFLRSKGLLNGLAAGTNWVFRDESAHMAFAFESIQVAR 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+  + ++    ML EA   E  +A + +  G +GL+      Y++++A++R   
Sbjct: 237 KEEPDLFDAQMERDVVAMLREAVECETQFAQDLLSGGVMGLSVQDMRGYLEYVADQRLQM 296

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           +G+ P+F  T+NP  +M  + D+++  NFFE RV+ YQ  
Sbjct: 297 LGMTPVFG-TKNPLHFMD-LQDVQELTNFFERRVSSYQVA 334


>gi|308490981|ref|XP_003107682.1| CRE-RNR-2 protein [Caenorhabditis remanei]
 gi|308250551|gb|EFO94503.1| CRE-RNR-2 protein [Caenorhabditis remanei]
          Length = 377

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 155/333 (46%), Gaps = 28/333 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    +   + PL++   W+ Y  A  + W   EV +  D+  W+    +  DE+ 
Sbjct: 57  NEPLLQDLDNRFVIFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWE---KMNGDEQY 113

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  +I +   
Sbjct: 114 FISRVLAFFAASDGIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEMYSKLIETYIR 173

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E   LFN   E   I  KA+WA+++              D    F + L  F  V E
Sbjct: 174 DEKERLTLFNAIFEFEFIKKKADWAMKWI------------SDKKASFAERLIAFAAV-E 220

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   + + ++ +         
Sbjct: 221 GIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYSMLQNKL-------T 273

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           Q++   ++ +A  +E  +  E +P   +G+N     QY++F+A+    ++G + L+   +
Sbjct: 274 QERIFEIIRDAVCIEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLAELGCDKLYNV-K 332

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M E I +  + NFFE RV+EYQ+   + 
Sbjct: 333 NPFDFM-ENISIDGKTNFFEKRVSEYQRPGVMS 364


>gi|290957506|ref|YP_003488688.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           scabiei 87.22]
 gi|260647032|emb|CBG70131.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           scabiei 87.22]
          Length = 355

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 103/337 (30%), Positives = 182/337 (54%), Gaps = 10/337 (2%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + D+ +L+   ++  L P++Y   +E+Y  A  N W   EV +  D+A       L++ E
Sbjct: 21  MTDQNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSEGE 76

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           + MI R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ + 
Sbjct: 77  QHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTY 136

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D  +    F     +PSI  KA +  ++  ++          D  + FL +L  F   
Sbjct: 137 LPDPADRVAAFAAVENIPSIREKAEFCFKWMDSVEKLDRLESQAD-RRRFLLNLICFAAC 195

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY  FA +        + G+A    ++ RDE++H++F  +V++ ++ E P L+ +
Sbjct: 196 IEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPELFDE 255

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +Q+   ML EA   E+ +  +    G  G+N  S  QY++ +A++R  ++G  P++  
Sbjct: 256 LLRQQVTDMLKEAVEAELQFGRDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG- 314

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           ++NPF +M E+  +++  NFFE R + YQ   E   D
Sbjct: 315 SQNPFSFM-ELQGVQELTNFFERRPSAYQVAVEGTVD 350


>gi|148912897|ref|YP_001293211.1| hypothetical protein GTPV_gp017 [Goatpox virus Pellor]
          Length = 321

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 149/332 (44%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+ Y   W  Y  A  + W   EV +  DLA WK    L ++E+  
Sbjct: 2   EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLNNEEQYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +    
Sbjct: 59  IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAIENIHSEMYSLLIDTYISS 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +  I  K+ WA ++              +    F + L  F  V EG
Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI------------SNKKASFGERLIAFAAV-EG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +K            
Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLK-------YPPSN 218

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
              + +++EA  +E  +    +P   +G+N     QY++FIA+R   ++G + +F  + N
Sbjct: 219 DIIKIIINEAVSIEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVF-MSTN 277

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV+EYQ+   + 
Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308


>gi|311696539|gb|ADP99412.1| ribonucleotide-diphosphate reductase beta subunit [marine bacterium
           HP15]
          Length = 352

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 138/349 (39%), Positives = 194/349 (55%), Gaps = 5/349 (1%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
                +        VNVDDKR++N  +D+NQL P KY WAWE +++A  NHW P +V M 
Sbjct: 9   KTESRAAHPGAPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMA 68

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D+  +  +  LT  E+ + +  L +  +S+ L   NI LA+   +S PE + Y  RQ +
Sbjct: 69  QDVHDYHHR--LTAPEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVY 126

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEA+H+  +Q+ I +L LD+ E++N YR VP+I  K   A +       P      KD  
Sbjct: 127 EEAMHTWAYQHCIETLNLDQSEIYNRYRVVPAINGKIQIANRRLDAAMRPDMNLRNKDDL 186

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           QEF+     F  VFEG WFY GF+ I +L R   M G  EQ QYI+RDE++H +FG+ V+
Sbjct: 187 QEFIMSYLFFAAVFEGTWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVV 246

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           NQI  E    +     +  R M  E+   E AYA   +    +G +A    +  +F+ANR
Sbjct: 247 NQIVEEENITFDP---KAVREMWDESEAAEKAYADYILRDPILGYSAEYHSEQFRFVANR 303

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           R   +GLE  F   +N  PW+ E   L+KEKNFFETRV EYQ GA+L+W
Sbjct: 304 RARTVGLEEPFPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352


>gi|254384639|ref|ZP_04999978.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp.
           Mg1]
 gi|194343523|gb|EDX24489.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp.
           Mg1]
          Length = 338

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 106/338 (31%), Positives = 182/338 (53%), Gaps = 10/338 (2%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           + D K +L+   ++  L P++Y   +E+Y  A  N W   EV +  D+A       LT  
Sbjct: 3   STDQKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTPA 58

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +
Sbjct: 59  EQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDT 118

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  +    F+   E+PSI  KA +  ++   +        T+   + FL +L  F  
Sbjct: 119 YLPDPDDRAAAFDAVEEIPSIREKAQFCFKWINEVEKLD-RLETQADRRRFLLNLICFAA 177

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++FY  FA +        + G+A    ++ RDE++H+NF  +V++ ++ E P L+ 
Sbjct: 178 CIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFD 237

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
              QQ+   ML EA   E+ +  +    G  G+N  S  +Y++ +A++R  ++G  P++ 
Sbjct: 238 DALQQQVTDMLKEAVDAELQFGRDLCGDGLPGMNTESMREYLECVADQRLVRLGFAPVYG 297

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
            ++NPF +M E+  +++  NFFE R + YQ   E   D
Sbjct: 298 -SQNPFSFM-ELQGVQELTNFFERRPSAYQVAVEGTVD 333


>gi|22595713|gb|AAN02745.1| ribonucleotide reductase small subunit [lumpy skin disease virus]
          Length = 321

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 148/332 (44%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+ Y   W  Y  A  + W   EV +  DLA WK    L ++E+  
Sbjct: 2   EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLNNEEQYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +    
Sbjct: 59  IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +  I  K+ WA ++              +    F + L  F  V EG
Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI------------SNKKASFGERLIAFAAV-EG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +K            
Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLK-------YPPSN 218

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                +++EA  +E  +    +P   +G+N     QY++FIA+R   ++G + +F  + N
Sbjct: 219 DIITIIINEAVSIEKEFLTNIIPVKLIGMNCVLMSQYIEFIADRLLLELGCDKVF-MSTN 277

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV+EYQ+   + 
Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308


>gi|256785295|ref|ZP_05523726.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           lividans TK24]
 gi|289769189|ref|ZP_06528567.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           lividans TK24]
 gi|289699388|gb|EFD66817.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           lividans TK24]
          Length = 343

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 108/342 (31%), Positives = 185/342 (54%), Gaps = 10/342 (2%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  V+   K +L+   ++  L P++Y   +E+Y  A  N W   EV +  D+A       
Sbjct: 4   ETPVHPTTKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAK 59

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L+  E+ +I R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  
Sbjct: 60  LSPMEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLT 119

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           ++ +   D  +    F     +PSI  KA +  ++  ++ S      TK   + FL +L 
Sbjct: 120 LLDTYLPDPEDRAAAFAAVENIPSIREKAEFCFRWMDSVESID-RLETKADRRRFLLNLI 178

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
            F    EG++FY  FA +        + G+A    ++ RDE++H++F  DV++ ++ E P
Sbjct: 179 CFAACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEP 238

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L+  + +++   ML EA   E+ +A +    G  G+N  S  QY++ +A++R  ++G  
Sbjct: 239 ELFDDQLREQVTDMLREAVEAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFA 298

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           P++  +ENPF +M E+  +++  NFFE R + YQ   E   D
Sbjct: 299 PVYG-SENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGTVD 338


>gi|154250961|ref|YP_001411785.1| ribonucleotide-diphosphate reductase subunit beta [Parvibaculum
           lavamentivorans DS-1]
 gi|154154911|gb|ABS62128.1| Ribonucleoside-diphosphate reductase [Parvibaculum lavamentivorans
           DS-1]
          Length = 319

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 155/324 (47%), Gaps = 17/324 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
            +   P +Y WA+E +L+    HW+P EVP+ DD+  W     LT+ ER ++ +   FF 
Sbjct: 7   RHVYKPFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWSK--KLTEGERNLLTQIFRFFV 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V N  +    R     E +  L   +  E VH   + +++ ++G+ E E +  + 
Sbjct: 65  QADVEVNNCYMKHYSRVFKPTEVQMMLAAFSNIETVHISAYSHLLDTIGMPEAE-YEAFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  K ++  ++              +   +  + L VF    EG+  +  FA +++
Sbjct: 124 KYEQMKTKFDYMQEW------------GVETKADIAKTLAVFGGFTEGVQLFASFAILMN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   +  RDE+LH    + +      ENP +WT+E ++           
Sbjct: 172 FPRFNKMKGMGQIVTWSARDETLHTVSAMKLFRTFVDENPEIWTEELRRDIYKACETIIH 231

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            E A+       G   GL+A   + Y+++IA+RR  Q+ L+P+++  +NP PWM E+++ 
Sbjct: 232 HEDAFIDLAFEMGSIEGLSAQEVKNYIRYIADRRLVQLNLQPIYRTEKNPLPWMDEMLNG 291

Query: 330 KKEKNFFETRVTEYQQGAE-LKWD 352
            +  NFFE R TEY + +    W+
Sbjct: 292 IEHTNFFENRATEYSKASTRGSWE 315


>gi|256391238|ref|YP_003112802.1| ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM
           44928]
 gi|256357464|gb|ACU70961.1| Ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM
           44928]
          Length = 331

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 110/334 (32%), Positives = 184/334 (55%), Gaps = 12/334 (3%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L+   D+  L P++Y   +++Y  A  N W   EV +  DL      + L+  ER ++ 
Sbjct: 2   LLDPGLDL-TLRPMRYPHFFDRYRDAIKNTWTVEEVDLHSDLTD---LDRLSAAERHLVS 57

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   DE 
Sbjct: 58  RLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDED 117

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E    F     +PSI  KA +  ++  +L +      +++  + FL +L  F    EG++
Sbjct: 118 ERTEAFAAVENIPSIRRKAEFCFRWIDSLGNLQ-RLESREDRRAFLLNLICFAACIEGLF 176

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  FA +  L     + G+A    ++ RDES+H+ F  DV++ ++ E P L+ ++  Q+
Sbjct: 177 FYGAFAYVYFLRSRGLLHGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDEKMAQQ 236

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R ML EA   E  +A + +  G  GL       Y++ +A+RR  Q+GLEP++  T NP 
Sbjct: 237 VREMLAEAVECETQFAGDLLGGGVSGLPVADMRAYLEHVADRRLEQLGLEPMYG-TANPL 295

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
            +M E+ D+++  NFFE RV+ YQ      + +D
Sbjct: 296 GFM-ELQDVQELSNFFERRVSAYQVAVGGSVSFD 328


>gi|118500933|gb|ABK97635.1| ribonucleoside diphosphate reductase beta subunit [Allochromatium
           vinosum DSM 180]
          Length = 280

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 187/280 (66%), Positives = 233/280 (83%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +D+NQL+P KY WAW+KYL AC NHWMP E+ M  DLALWK  +GLT+DERL++KRNLGF
Sbjct: 1   ADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNADLALWKDPHGLTEDERLIVKRNLGF 60

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
           F++++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA+H+H +QY++ SLGLDEGE+FNM
Sbjct: 61  FSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVVESLGLDEGEIFNM 120

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           YREVP++  KA WAL +TQ L+ P F TGT + DQ+ L +L  FYV+FEG++FY GF QI
Sbjct: 121 YREVPAVARKAEWALPFTQHLADPHFQTGTPENDQKLLCELVAFYVIFEGIFFYVGFVQI 180

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           LS+GR NKM G AEQ+QYI+RDES+H+NFGIDVINQIKIENPHLWT +F+Q+   M+ EA
Sbjct: 181 LSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVINQIKIENPHLWTPDFRQELVGMIREA 240

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             LE  YAH+TMP+G +GLNA   E Y+ FIANRRC QIG
Sbjct: 241 VELEARYAHDTMPRGVLGLNAQMFEDYLHFIANRRCAQIG 280


>gi|238061574|ref|ZP_04606283.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC
           39149]
 gi|237883385|gb|EEP72213.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC
           39149]
          Length = 344

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 113/345 (32%), Positives = 189/345 (54%), Gaps = 13/345 (3%)

Query: 14  EKRVNVDDKR-MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
                +D +  +L+   D+  L P++Y   ++++  A  N W   EV +  DLA      
Sbjct: 4   TSEPRLDTRHTLLDPGMDL-TLRPMRYPHFFDRFKDAIKNTWTVEEVDLHSDLAD---LA 59

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  ER ++ R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH   + 
Sbjct: 60  RLSPAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYL 119

Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            ++ +   DE E    F     +PSI  KA +  ++  ++        T++  + FL +L
Sbjct: 120 NLLDTYVPDERERFAAFAAIENIPSIRRKAEFCFRWIDSIFEL-RELKTREDRRAFLLNL 178

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
             F    EG++FY  FA +  L     + G+A    ++ RDES+H+ F  DV++ ++ E 
Sbjct: 179 ICFAACIEGLFFYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTVRHEE 238

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           P L+  E  ++ R ML EA   E  +A + + +G  GL+     QY+Q +A+RR  Q+G+
Sbjct: 239 PDLFDDELARQVREMLAEAVECEAQFAEDLLEQGVSGLSLDDMRQYLQHVADRRLAQLGI 298

Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
            PL+  + NPF +M E+ D+++  NFFE RV+ YQ G    + +D
Sbjct: 299 APLYG-SANPFAFM-ELQDVQELSNFFERRVSAYQVGVTGSVTFD 341


>gi|171913278|ref|ZP_02928748.1| ribonucleotide-diphosphate reductase subunit beta [Verrucomicrobium
           spinosum DSM 4136]
          Length = 361

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 115/329 (34%), Positives = 186/329 (56%), Gaps = 2/329 (0%)

Query: 22  KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           KR++N R  +   LLPLKY WA++ Y     NHW P ++ MQ D+  W+S + + + ER 
Sbjct: 26  KRVINGRQTMTFNLLPLKYQWAYDLYRVMKANHWEPEDIQMQKDVEQWRSVDQVAEVERW 85

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +I   +G+F+++E +V +NI   +   ++ PE +  L R A EE +H+ +  Y+I+SLG+
Sbjct: 86  IIMMGIGYFSAAEGIVGDNIQHVVRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +  E   M+ ++P+I  K  +  + +  L          +  +   +++FVF    EG  
Sbjct: 146 NPHECEAMFEDIPTIVKKNAFVTRSSNALRR-DLDLTQIENKRLLAKNIFVFGQCMEGTQ 204

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  F  ILSL R  K  GI   ++Y +RDES H+    ++   +  ENP +WT EF+++
Sbjct: 205 FYGLFGMILSLYRQGKFPGIGTMFRYTLRDESNHIKVFRNLFMDLIDENPEIWTPEFREE 264

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  LE  +  + +P   VGL A   E Y+ FIA+RR   +GL  L     NP 
Sbjct: 265 LVELMKEAVALEKEFIRDCLPVAAVGLTAGEFELYIDFIADRRLASVGLPALTPGIVNPL 324

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           PW++E+ D++KE+NFFE  VT+YQ+ + L
Sbjct: 325 PWLAEMQDIRKEQNFFEGTVTDYQKASSL 353


>gi|71083845|ref|YP_266565.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062958|gb|AAZ21961.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 337

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 154/341 (45%), Gaps = 20/341 (5%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
            E+ V      +L          P +Y W ++ +L+    HW+P EVP+ DD+  W+   
Sbjct: 10  KEEIVKPQKMGLLVENP---VYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK-- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT  E+ ++ +   FF  ++  V N  +          E    +   A  E VH   + 
Sbjct: 65  NLTQSEKNLLTQIFRFFTQADVEVQNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYS 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           +++ ++G+ E E ++ + +   +  K ++   +               + ++    + VF
Sbjct: 125 HLLDTIGMPESE-YSAFMKYKEMKDKYDYMQNF------------DMSSKKDIALTVAVF 171

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
               EG+  +  FA +L+  R NKM G+ +   + +RDE+LH N  I +  +   ENP +
Sbjct: 172 SAFTEGLQLFASFAILLNFPRHNKMKGMGQIVTWSVRDETLHCNSMIRLFKEFIHENPEI 231

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           WT E + +           E A+       G   GL A   + Y++FIANRR  Q+GLEP
Sbjct: 232 WTPELKAELYKACRTIIEHEDAFIDLAFEMGPMQGLTAQDVKLYIRFIANRRLSQLGLEP 291

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ-GAELKW 351
           ++   +NP  W+  +++  +  NFFE R TEY +   +  W
Sbjct: 292 IYDVDKNPLTWLDSMLNAVEHMNFFEGRSTEYSKAATQGTW 332


>gi|300706309|ref|XP_002995432.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01]
 gi|239604534|gb|EEQ81761.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01]
          Length = 325

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 150/328 (45%), Gaps = 30/328 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +LN   +   L P+KY   W+ Y  A ++ W   EV +  D   W S   L D ER  
Sbjct: 8   EPLLNPNEERYVLFPIKYHDIWQMYKKAESSFWTVEEVDLTADRNDWLS---LNDKERYF 64

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+V      ++  E + +   Q   E +HS  +  +I +   D
Sbjct: 65  ISNILAFFAASDGIVNANLVERFANEVTILEAKCFYGFQVAIENIHSEMYSLLIDAYITD 124

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LFN    +P I  KA+WAL++                ++       + +   EG
Sbjct: 125 QDEKTHLFNAISTIPCIKKKADWALKWI-------------KDEKSSFATRVIAFACVEG 171

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L     M G+    + I RDE LH +F   +   +  ++PH       
Sbjct: 172 IFFSGAFASIFWLKNRGLMPGLTFSNELISRDEGLHCDFACLLNQYLINKSPH------- 224

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                ++ EA  +E  +   ++P   +G+N     QY++F+A+R    +GLE  +  T N
Sbjct: 225 --ILDIVKEAVEIEKEFLGVSLPVNLIGMNCKLMCQYIEFVADRLLINLGLEKYYN-TLN 281

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           PF +M E I L  + NFF+ R ++YQ+ 
Sbjct: 282 PFDFM-ENISLVGKTNFFDKRESQYQKA 308


>gi|172448|gb|AAA34987.1| ribonucleotide reductase subunit 2 (RNR2) [Saccharomyces
           cerevisiae]
          Length = 399

 Score =  243 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 99/337 (29%), Positives = 156/337 (46%), Gaps = 33/337 (9%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT---EVPMQDDLALWKSKNGLTD 76
            ++ +LN   +   L P+KY   W+ Y     + W      E+ +  D+  W   N + +
Sbjct: 74  KEEPLLNEDKERTVLFPIKYHEIWQAY---EASFWTAETAEEIDLSKDIHDWN--NRMNE 128

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +ER  I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I 
Sbjct: 129 NERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLID 188

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           +   D  E   LFN    +P I  KA WAL++ Q            DAD  F + L   +
Sbjct: 189 TYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-F 235

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  L +   M G+    + I RDE LH +F   +   +K +     
Sbjct: 236 ASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP-- 293

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
                     ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +
Sbjct: 294 -----AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYY 348

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           K  ENPF +M E I L  + NFFE RV++YQ+   + 
Sbjct: 349 KV-ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383


>gi|15150459|ref|NP_150454.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease
           virus NI-2490]
 gi|15149031|gb|AAK84981.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease
           virus NI-2490]
 gi|22595554|gb|AAN02587.1| ribonucleotide reductase small subunit [Lumpy skin disease virus
           NW-LW]
          Length = 321

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 150/332 (45%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+ Y   W  Y  A  + W   EV +  DLA WK    L+++E+  
Sbjct: 2   EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLSNEEQYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +    
Sbjct: 59  IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +  I  K+ WA ++              +    F + L  F  V EG
Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI------------SNKKASFGERLIAFAAV-EG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +K            
Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLK-------YPPSN 218

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    +++EA  +E  +    +P   +G+N     QY++FIA+R   ++G + +F  + N
Sbjct: 219 EIITIIINEAVSIEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVF-MSTN 277

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV+EYQ+   + 
Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308


>gi|13876672|gb|AAK43560.1| ribonucleoside reductase [lumpy skin disease virus]
          Length = 321

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 148/332 (44%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+ Y   W  Y  A  + W   EV +  DLA WK    L ++E+  
Sbjct: 2   EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLNNEEQYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +    
Sbjct: 59  IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +  I  K+ WA ++              +    F + L  F  V EG
Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI------------SNKKASFGERLIAFAAV-EG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +K            
Sbjct: 166 IFFCGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLK-------YPPSN 218

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                +++EA  +E  +    +P   +G+N     QY++FIA+R   ++G + +F  + N
Sbjct: 219 DIITIIINEAVSIEKEFLTNIIPVKLIGMNCVLMSQYIEFIADRLLLELGCDKVF-MSTN 277

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF +M E I L+ + NFFE RV+EYQ+   + 
Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308


>gi|297202281|ref|ZP_06919678.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sviceus ATCC 29083]
 gi|197710199|gb|EDY54233.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sviceus ATCC 29083]
          Length = 340

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 103/323 (31%), Positives = 172/323 (53%), Gaps = 9/323 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D+        L+  E+ +I R + FFA+ 
Sbjct: 19  TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVTD---LAKLSPAEQHLIGRLVAFFATG 75

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F+  
Sbjct: 76  DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPQDRAAAFDAV 135

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA +  ++   +          D  + FL +L  F    EG++FY  FA + 
Sbjct: 136 ENIPSIREKAEFCFRWINEVEKLDRLESQAD-RRRFLLNLICFAACIEGLFFYGAFAYVY 194

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H++F  DV++ ++ E P L+    QQ+   ML EA 
Sbjct: 195 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDRLQQQVTDMLAEAV 254

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+  +
Sbjct: 255 EAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQGV 312

Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
           ++  NFFE R + YQ   E   D
Sbjct: 313 QELTNFFERRPSAYQVAVEGTVD 335


>gi|91763118|ref|ZP_01265082.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717531|gb|EAS84182.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 342

 Score =  243 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 154/341 (45%), Gaps = 20/341 (5%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
            E+ V      +L          P +Y W ++ +L+    HW+P EVP+ DD+  W+   
Sbjct: 15  KEEIVKPQKMGLLVENP---VYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK-- 69

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT  E+ ++ +   FF  ++  V N  +          E    +   A  E VH   + 
Sbjct: 70  NLTQSEKNLLTQIFRFFTQADVEVQNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYS 129

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           +++ ++G+ E E ++ + +   +  K ++   +               + ++    + VF
Sbjct: 130 HLLDTIGMPESE-YSAFMKYKEMKDKYDYMQNF------------DMSSKKDIALTVAVF 176

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
               EG+  +  FA +L+  R NKM G+ +   + +RDE+LH N  I +  +   ENP +
Sbjct: 177 SAFTEGLQLFASFAILLNFPRHNKMKGMGQIVTWSVRDETLHCNSMIRLFKEFIHENPEI 236

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           WT E + +           E A+       G   GL A   + Y++FIANRR  Q+GLEP
Sbjct: 237 WTPELKAELYKACRTIIEHEDAFIDLAFEMGPMQGLTAQDVKLYIRFIANRRLSQLGLEP 296

Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ-GAELKW 351
           ++   +NP  W+  +++  +  NFFE R TEY +   +  W
Sbjct: 297 IYDVDKNPLTWLDSMLNAVEHMNFFEGRSTEYSKAATQGTW 337


>gi|254455551|ref|ZP_05068980.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207082553|gb|EDZ59979.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 335

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 82/330 (24%), Positives = 154/330 (46%), Gaps = 20/330 (6%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L          P +Y W ++ +L+    HW+P EVP+ DD+  W+    L+  E+ ++ 
Sbjct: 19  LLVENP---VYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLSQSEKNLLT 73

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           +   FF  ++  V N  +          E    +   A  E VH   + +++ ++G+ E 
Sbjct: 74  QIFRFFTQADVEVNNCYLRHYTTVFKPTEVLMMMTAFAAMETVHVAAYSHLLDTIGMPES 133

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E ++ + +   +  K ++   +              ++ ++  + + VF    EG+  + 
Sbjct: 134 E-YSAFMKYKEMKDKYDYMQDF------------NVNSKEDIAKTVAVFSAFTEGLQLFA 180

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            FA +L+  R NKM G+ +   + +RDE+LH N  I +  +   ENP +WT + +++   
Sbjct: 181 SFAILLNFPRHNKMKGMGQIVTWSVRDETLHCNSMIRIFKEFINENPEIWTPKLKKELYE 240

Query: 264 MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
                   E A+       G   GL A   + Y++FI NRR  Q+GLEP++   +NP  W
Sbjct: 241 ACRTIIAHEDAFIDLAFEMGPMEGLTAQEVKDYIRFIGNRRLTQLGLEPIYDVDKNPLGW 300

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA-ELKW 351
           +  +++  +  NFFE R TEY + + +  W
Sbjct: 301 LDTMLNAVEHMNFFEGRATEYSKASTQGTW 330


>gi|239944172|ref|ZP_04696109.1| putative ribonucleoside-diphosphate reductase small subunit
           [Streptomyces roseosporus NRRL 15998]
 gi|239990628|ref|ZP_04711292.1| putative ribonucleoside-diphosphate reductase small subunit
           [Streptomyces roseosporus NRRL 11379]
 gi|291447643|ref|ZP_06587033.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           roseosporus NRRL 15998]
 gi|291350590|gb|EFE77494.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           roseosporus NRRL 15998]
          Length = 338

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 107/334 (32%), Positives = 183/334 (54%), Gaps = 10/334 (2%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +DK +L+   ++  L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+
Sbjct: 5   EDKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQ 60

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +  
Sbjct: 61  HMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYL 120

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  +    F+   E+PSI  KA +  ++  ++        TK   + FL +L  F    
Sbjct: 121 PDPDDRAAAFDAVEEIPSIREKAQFCFKWMDSVEKIE-RLETKADRRRFLLNLICFAACI 179

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY  FA +        + G+A    ++ RDE++H+NF  +V++ ++ E P L+  E
Sbjct: 180 EGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDE 239

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            QQ+   ML EA   E+ +  +   +G  G+N  S  QY++ +A++R  ++G   ++  +
Sbjct: 240 LQQQVTDMLKEAVEAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGFPTVYG-S 298

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ENPF +M E+  +++  NFFE R + YQ   E  
Sbjct: 299 ENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGS 331


>gi|254388985|ref|ZP_05004216.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           clavuligerus ATCC 27064]
 gi|294814921|ref|ZP_06773564.1| Ribonucleoside-diphosphate reductase beta chain protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|326443293|ref|ZP_08218027.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702703|gb|EDY48515.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           clavuligerus ATCC 27064]
 gi|218078699|emb|CAB90708.3| class Ia ribonucleotide-diphosphate reductase small subunit chain
           [Streptomyces clavuligerus ATCC 27064]
 gi|294327520|gb|EFG09163.1| Ribonucleoside-diphosphate reductase beta chain protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 339

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 102/323 (31%), Positives = 173/323 (53%), Gaps = 9/323 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D+        L+  E+ +I R + FFA+ 
Sbjct: 18  TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVPD---LAKLSPGEQHLIGRLVAFFATG 74

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 75  DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRNAAFAAV 134

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA + 
Sbjct: 135 ENIPSIREKAQFCFRWMDSVEKLD-QLETQADRRRFLLNLICFAACIEGLFFYGAFAYVY 193

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H+NF  +V++ ++ E P L+    QQ+   ML EA 
Sbjct: 194 WFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKEAV 253

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ ++ +    G  G+N  S  +Y+Q +A++R  ++G  P++  +ENPF +M E+  +
Sbjct: 254 EAELQFSRDLCGDGLPGMNTESMREYLQCVADQRLARLGFAPVYG-SENPFSFM-ELQGV 311

Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
           ++  NFFE R + YQ   E   D
Sbjct: 312 QELTNFFERRPSAYQVAVEGSVD 334


>gi|21223593|ref|NP_629372.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           coelicolor A3(2)]
 gi|7328345|emb|CAB82486.1| class I ribonucleotide-diphosphate reductase small subunit chain
           [Streptomyces coelicolor A3(2)]
 gi|8546891|emb|CAB94610.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           coelicolor A3(2)]
          Length = 343

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 107/342 (31%), Positives = 184/342 (53%), Gaps = 10/342 (2%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E   +   K +L+   ++  L P++Y   +E+Y  A  N W   EV +  D+A       
Sbjct: 4   ETPAHPTTKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAK 59

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L+  E+ +I R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  
Sbjct: 60  LSPMEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLT 119

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           ++ +   D  +    F     +PSI  KA +  ++  ++ S      TK   + FL +L 
Sbjct: 120 LLDTYLPDPEDRAAAFAAVENIPSIREKAEFCFRWMDSVESID-RLETKADRRRFLLNLI 178

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
            F    EG++FY  FA +        + G+A    ++ RDE++H++F  DV++ ++ E P
Sbjct: 179 CFAACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEP 238

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L+  + +++   ML EA   E+ +A +    G  G+N  S  QY++ +A++R  ++G  
Sbjct: 239 ELFDDQLREQVTDMLREAVEAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFA 298

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           P++  +ENPF +M E+  +++  NFFE R + YQ   E   D
Sbjct: 299 PVYG-SENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGTVD 338


>gi|182436093|ref|YP_001823812.1| putative ribonucleoside-diphosphate reductase small subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326776718|ref|ZP_08235983.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus
           XylebKG-1]
 gi|178464609|dbj|BAG19129.1| putative ribonucleoside-diphosphate reductase small subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326657051|gb|EGE41897.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 338

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 105/336 (31%), Positives = 183/336 (54%), Gaps = 10/336 (2%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           + ++K +L+   ++  L P++Y   +E+Y  A  N W   EV +  D+A       L+  
Sbjct: 3   STEEKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPG 58

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +
Sbjct: 59  EQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDT 118

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  +    F+   E+PSI  KA +  ++  ++        TK   + FL +L  F  
Sbjct: 119 YLPDPDDRAAAFDAVEEIPSIREKAQFCFRWMDSVEKID-RLETKADRRRFLLNLICFAA 177

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++FY  FA +        + G+A    ++ RDE++H+NF  +V++ ++ E P L+ 
Sbjct: 178 CIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFD 237

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
              QQ+   ML EA   E+ +  +   +G  G+N  S  QY++ +A++R  ++G   ++ 
Sbjct: 238 DALQQQVTDMLKEAVEAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGFPTVYG 297

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            +ENPF +M E+  +++  NFFE R + YQ   E  
Sbjct: 298 -SENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGS 331


>gi|320008647|gb|ADW03497.1| Ribonucleoside-diphosphate reductase [Streptomyces flavogriseus
           ATCC 33331]
          Length = 338

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 106/334 (31%), Positives = 182/334 (54%), Gaps = 10/334 (2%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           ++K +L+   ++  L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+
Sbjct: 5   ENKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQ 60

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +  
Sbjct: 61  HMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYL 120

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  +    F+   E+PSI  KA +  ++  ++        TK   + FL +L  F    
Sbjct: 121 PDPEDRAAAFDAVEEIPSIREKAQFCFRWMDSVEKIE-RLETKADRRRFLLNLICFAACI 179

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY  FA +        + G+A    ++ RDE++H+NF  +V++ ++ E P L+  E
Sbjct: 180 EGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDE 239

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            +Q+   ML EA   E+ +  +    G  G+N  S  QY++ +A++R  ++G   L+  +
Sbjct: 240 LRQQVTDMLKEAVEAELQFGRDLCGDGLPGMNTESMRQYLECVADQRLTRLGFPALYG-S 298

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ENPF +M E+  +++  NFFE R + YQ   E  
Sbjct: 299 ENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGS 331


>gi|328884923|emb|CCA58162.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
           [Streptomyces venezuelae ATCC 10712]
          Length = 338

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 107/336 (31%), Positives = 181/336 (53%), Gaps = 10/336 (2%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D+K +L+   ++  L P++Y   +E+Y  A  N W   EV +  D+A       LT  E+
Sbjct: 5   DEKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTPGEQ 60

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            MI R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +  
Sbjct: 61  HMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYL 120

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  +    F     +PSI  KA +  ++  ++        T+   + FL +L  F    
Sbjct: 121 PDPEDRAAAFAAVENIPSIREKAQFCFRWMDSVEKID-RLETQADRRRFLLNLICFAACI 179

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY  FA +        + G+A    ++ RDE++H+NF  +V++ ++ E P L+   
Sbjct: 180 EGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDA 239

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            +Q+   ML EA   E+ +  +    G  G+N  S  +Y+Q +A++R  ++G  P++  +
Sbjct: 240 LRQQVTDMLKEAVEAELQFGRDLCGDGLPGMNTESMREYLQCVADQRLQRLGFAPVYG-S 298

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           ENPF +M E+  +++  NFFE R + YQ   E   D
Sbjct: 299 ENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGSVD 333


>gi|302558498|ref|ZP_07310840.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           griseoflavus Tu4000]
 gi|302476116|gb|EFL39209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           griseoflavus Tu4000]
          Length = 341

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 103/323 (31%), Positives = 176/323 (54%), Gaps = 9/323 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D+A       L+ +E+ +I R + FFA+ 
Sbjct: 20  TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAKLSPEEQHLIGRLVAFFATG 76

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 77  DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 136

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA + 
Sbjct: 137 ENIPSIREKAEFCFRWMDSVEKLD-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVY 195

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H++F  DV++ ++ E P L+ ++  Q+   ML EA 
Sbjct: 196 WFRGRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDEQLGQQVTAMLREAV 255

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+  +
Sbjct: 256 EAELQFARDLCGDGLPGMNTESMRQYLECVADQRLVRLGFAPVYG-SENPFSFM-ELQGV 313

Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
           ++  NFFE R + YQ   E   D
Sbjct: 314 QELTNFFERRPSAYQVAVEGTVD 336


>gi|239929012|ref|ZP_04685965.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
           ghanaensis ATCC 14672]
          Length = 339

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 102/323 (31%), Positives = 173/323 (53%), Gaps = 9/323 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ 
Sbjct: 18  TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPAEQHLIGRLVAFFATG 74

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 75  DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 134

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA +   +  ++        T+   + FL +L  F    EG++FY  FA + 
Sbjct: 135 ENIPSIREKAEFCFTWMDSVEKLD-RLQTQADRRRFLLNLICFAACIEGLFFYGAFAYVY 193

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H++F  DV++ ++ E P L+ +   Q+   ML EA 
Sbjct: 194 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDERLGQQVTDMLREAV 253

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  ++NPF +M E+  +
Sbjct: 254 EAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGV 311

Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
           ++  NFFE R + YQ   E   D
Sbjct: 312 QELTNFFERRPSAYQVAVEGTVD 334


>gi|282861024|ref|ZP_06270089.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE]
 gi|282563682|gb|EFB69219.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE]
          Length = 340

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 103/321 (32%), Positives = 174/321 (54%), Gaps = 9/321 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ 
Sbjct: 19  TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATG 75

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F+  
Sbjct: 76  DSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFDAV 135

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            E+PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA + 
Sbjct: 136 EEIPSIREKAQFCFKWMDSVEEID-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVY 194

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H+NF  +V++ ++ E P L+    QQ+   ML EA 
Sbjct: 195 WFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLREAV 254

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +  +   +G  G+N  S  QY++ +A++R  ++G   L+  +ENPF +M E+  +
Sbjct: 255 EAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLTRLGFPALYG-SENPFSFM-ELQGV 312

Query: 330 KKEKNFFETRVTEYQQGAELK 350
           ++  NFFE R + YQ   E  
Sbjct: 313 QELTNFFERRPSAYQVAVEGS 333


>gi|294631326|ref|ZP_06709886.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. e14]
 gi|292834659|gb|EFF93008.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. e14]
          Length = 339

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 104/323 (32%), Positives = 174/323 (53%), Gaps = 9/323 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D+A       LT  E+ +I R + FFA+ 
Sbjct: 18  TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAKLTPGEQHLIGRLVAFFATG 74

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 75  DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 134

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA +   +  ++        T+   + FL +L  F    EG++FY  FA + 
Sbjct: 135 ENIPSIREKAEFCFTWMDSVEKLD-RLETRADRRRFLLNLICFAACIEGLFFYGAFAYVY 193

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H++F  DV++ ++ E P L+  + +Q+   ML EA 
Sbjct: 194 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPDLFDDQLEQQVTDMLREAV 253

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  +ENPF +M E+  +
Sbjct: 254 EAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQGV 311

Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
           ++  NFFE R + YQ   E   D
Sbjct: 312 QELTNFFERRPSAYQVAVEGTVD 334


>gi|117928932|ref|YP_873483.1| ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus
           11B]
 gi|117649395|gb|ABK53497.1| Ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus
           11B]
          Length = 348

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 112/340 (32%), Positives = 188/340 (55%), Gaps = 10/340 (2%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
               + +   +L+   D+  L P++Y   +E++ +A  N W   EV +  DLA  +    
Sbjct: 9   TNIADHERHALLDPGMDL-TLRPMRYPHFFERFKAAIRNTWTVEEVDLHSDLADLR---K 64

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L+  E  ++KR + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  
Sbjct: 65  LSPAEHHLVKRLVAFFATGDTIVANNLVLNLYQHINSPEARLYLSRQLFEEAVHVQFYLA 124

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           ++ +   DE E    F     +PSI  KA++  ++  ++        T    + FL +L 
Sbjct: 125 LLDTYITDERERAEAFAAIENIPSIKRKADFCFRWIDSIFDL-RELRTAADRRSFLLNLI 183

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
            F    EG++FY  FA +  L     + G+A    ++ RDES+H+ F  DVI+ ++ E P
Sbjct: 184 CFAACIEGLFFYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFAFDVIDTVRREEP 243

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L+  E  +++R ML EA   E  +A + + +G  G++      Y++ +A+RRC Q+GLE
Sbjct: 244 ELFDDELARQAREMLAEAVDCETQFAEDLLGQGVPGMSLADMRSYLEHVADRRCVQLGLE 303

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           P++  + NPF +M E+ D+++  NFFE RV  YQ G   +
Sbjct: 304 PIYG-SPNPFTFM-ELQDVQELSNFFERRVAAYQIGVSGE 341


>gi|329939692|ref|ZP_08288993.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           griseoaurantiacus M045]
 gi|329301262|gb|EGG45157.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           griseoaurantiacus M045]
          Length = 347

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 105/321 (32%), Positives = 174/321 (54%), Gaps = 9/321 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D+A       LT  ER +I R + FFA+ 
Sbjct: 26  TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAKLTPAERHLIGRLVAFFATG 82

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 83  DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 142

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA + 
Sbjct: 143 ENIPSIREKAEFCFRWMDSVERLD-RLETRSDRRRFLLNLICFAACIEGLFFYGAFAYVY 201

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H++F  DV++ ++ E P L+ +E  ++   ML EA 
Sbjct: 202 WFRGRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPGLFDEELGRQVTDMLREAV 261

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +A +    G  G+N  S  QY+Q +A++R  ++G  P++  +ENPF +M E+  +
Sbjct: 262 EAELQFARDLCGDGLPGMNTESMRQYLQCVADQRLVRLGFAPVYG-SENPFSFM-ELQGV 319

Query: 330 KKEKNFFETRVTEYQQGAELK 350
           ++  NFFE R + YQ   E  
Sbjct: 320 QELTNFFERRASAYQVAVEGS 340


>gi|15896521|ref|NP_349870.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           acetobutylicum ATCC 824]
 gi|15026352|gb|AAK81210.1|AE007823_4 Ribonucleotide reductase beta subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|325510679|gb|ADZ22315.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           acetobutylicum EA 2018]
          Length = 344

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 94/349 (26%), Positives = 164/349 (46%), Gaps = 13/349 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
             P+           K+++N  + ++N    +KY W  + Y    NN W+P E+ +  DL
Sbjct: 5   RRPLFNENGDTETSKKKIVNGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEINLSQDL 64

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     LTD+ER    + L F    +S+   N +  I  +++  E    L  QAF+EA
Sbjct: 65  KDY---GKLTDNERTAYDKILSFLIFLDSVQTAN-LGNINDYITASEVNLCLTIQAFQEA 120

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ ++   E       R       K +  L          +    ++   E 
Sbjct: 121 VHSQSYSYMLDTICSPEK------RNEILFQWKDDEVLLSRNKFIGDIYNNFVEEPSDEN 174

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                +   V EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++
Sbjct: 175 FLKAIMGNYVLEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKEL 234

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P ++T+E +++ + M+      EI + H  +     G+N    E Y++++ NRR  
Sbjct: 235 QKEEPDMFTEEIKKELKDMVKTGVENEITWGHYVIGDNIQGINKKLIEDYIKYLGNRRLE 294

Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            IG EP+++ Y ENP  W+    D    + +FFE + T Y + + L  D
Sbjct: 295 AIGFEPIYEGYDENPALWVDIYADANSVKTDFFEAKSTAYAKASTLVDD 343


>gi|314055235|ref|YP_004063573.1| ribonucleoside-diphosphate reductase small subunit-possible host
           origin [Ostreococcus tauri virus 2]
 gi|313575126|emb|CBI70139.1| ribonucleoside-diphosphate reductase small subunit-possible host
           origin [Ostreococcus tauri virus 2]
          Length = 408

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 90/334 (26%), Positives = 150/334 (44%), Gaps = 31/334 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + PLKY   WE Y  A  ++W   EV +  DL  WK+   L ++E+  
Sbjct: 93  EPILAPTLNRFTVFPLKYPQLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNENEKKF 149

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA S+ +V  NI       +   E R +   Q   E VH  T+  +I     D
Sbjct: 150 IKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKD 209

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LF   + VP I  KA WA+++              D       +    +   EG
Sbjct: 210 GSEKKQLFEAIQTVPCIEKKAKWAMKW-------------FDTKSRSFAERLFAFACVEG 256

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH  F +++   ++        +   
Sbjct: 257 IFFSGSFCAIYWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLRN-------RPTT 309

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++ EA  +E  +  + +P   +G+N+    +Y++++++R   Q+G+ P++   +N
Sbjct: 310 ETIHAIVKEAVEIEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQVGVPPIWN-AKN 368

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M E I L  + NFFE RV +Y    +L  D
Sbjct: 369 PFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 398


>gi|239947951|ref|ZP_04699704.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922227|gb|EER22251.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 327

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 89/321 (27%), Positives = 151/321 (47%), Gaps = 17/321 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA+E + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++
Sbjct: 10  YKPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +  
Sbjct: 68  IEVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+              D  ++    L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYMQQF------------GVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDE+LH N  I +     IENP +WT+  +++           E 
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVIENPEVWTETLRKRIYEACTTIVHFED 234

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           A+       G   GL A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++  + 
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE R TEY +      W+
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315


>gi|291437353|ref|ZP_06576743.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           ghanaensis ATCC 14672]
 gi|291340248|gb|EFE67204.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
           ghanaensis ATCC 14672]
          Length = 340

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 102/323 (31%), Positives = 173/323 (53%), Gaps = 9/323 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ +I R + FFA+ 
Sbjct: 19  TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPAEQHLIGRLVAFFATG 75

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 76  DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 135

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA +   +  ++        T+   + FL +L  F    EG++FY  FA + 
Sbjct: 136 ENIPSIREKAEFCFTWMDSVEKLD-RLQTQADRRRFLLNLICFAACIEGLFFYGAFAYVY 194

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H++F  DV++ ++ E P L+ +   Q+   ML EA 
Sbjct: 195 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDERLGQQVTDMLREAV 254

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +A +    G  G+N  S  QY++ +A++R  ++G  P++  ++NPF +M E+  +
Sbjct: 255 EAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGV 312

Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
           ++  NFFE R + YQ   E   D
Sbjct: 313 QELTNFFERRPSAYQVAVEGTVD 335


>gi|157964544|ref|YP_001499368.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           massiliae MTU5]
 gi|157844320|gb|ABV84821.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia
           massiliae MTU5]
          Length = 336

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 89/321 (27%), Positives = 151/321 (47%), Gaps = 17/321 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA+E + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++
Sbjct: 11  YKPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 68

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +  
Sbjct: 69  IEVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 127

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+              DA ++    L VF    EG+  +  FA +L+  R
Sbjct: 128 EMKDKYDYMQQF------------GVDAKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 175

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++           E 
Sbjct: 176 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 235

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           A+       G   GL A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++  + 
Sbjct: 236 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 295

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE R TEY +      W+
Sbjct: 296 TNFFENRATEYSKAATTGSWE 316


>gi|9632043|ref|NP_048832.1| hypothetical protein PBCV1_A476R [Paramecium bursaria Chlorella
           virus 1]
 gi|1620147|gb|AAC96843.1| contains ribonucleotide reductase (RR) signature; similar to
           tobacco RR small subunit, corresponds to Swiss-Prot
           Accession Number P49730 [Paramecium bursaria Chlorella
           virus 1]
          Length = 324

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 98/336 (29%), Positives = 164/336 (48%), Gaps = 29/336 (8%)

Query: 19  VDDKRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            + + +L           P++Y   W+ Y  A    W   EVP+  D+  W+    L DD
Sbjct: 2   ANQEPILADNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWRE--KLNDD 59

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  IK  LGFFA S+ +V  N+       ++ PE RQ+   Q F E++HS  +  +I +
Sbjct: 60  ERHFIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDA 119

Query: 138 LGLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           L  DE    ELF+    +P++  KA WA ++ +               + F + L  + V
Sbjct: 120 LISDEQERNELFDAIENIPAVHNKAKWAQKWLE-------------PGKSFAERLVAW-V 165

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG+ F   F  I  L     M G+    ++I RDE LH  FG  + ++++ + P    
Sbjct: 166 CVEGILFSGSFCAIFWLRNKGVMPGLGLSNEFISRDEGLHQQFGELMYSKLQNKLPF--- 222

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
               +  + ++ EA   E  +  + +P   +G+NA    QY++F+A+R    +G E ++ 
Sbjct: 223 ----ETVKQIITEAVENEKEFICDAIPCRLIGMNAELMGQYIEFVADRIFVALGYEKVYN 278

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            ++NPF +M E+I L+ + NFFE RV++YQ+   +K
Sbjct: 279 -SKNPFAFM-ELISLQGKTNFFEKRVSDYQRPGVMK 312


>gi|114799612|ref|YP_759103.1| ribonucleotide-diphosphate reductase subunit beta [Hyphomonas
           neptunium ATCC 15444]
 gi|114739786|gb|ABI77911.1| ribonucleoside-diphosphate reductase, beta subunit [Hyphomonas
           neptunium ATCC 15444]
          Length = 345

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 151/322 (46%), Gaps = 18/322 (5%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           N   P +Y WA+E +      HWMP EVP+ +D   W     L+D ER ++ +   FF  
Sbjct: 16  NAYKPFRYPWAYEFWKKQQQVHWMPEEVPLGEDCKDWA--VKLSDAERNLLTQIFRFFTQ 73

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
           S+  V  N +          E    L   +  E +H   +  ++ ++G+ + E F+ + E
Sbjct: 74  SDVEVGANYMEHYMPLFKPVEVSMMLASFSNMETIHVAAYALLLETIGMPDSE-FSAFME 132

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
              + AK ++  Q+              + +++    + VF    EG+  +  FA +++ 
Sbjct: 133 YKEMAAKHDYLGQF------------GTETNEDIAVSMAVFGAFTEGLQLFASFAMLMNF 180

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            R NKM G+ +   + +RDESLH    I + +    E   + T E +++ R        L
Sbjct: 181 PRFNKMKGMGQIVTWSIRDESLHCEGMIKLFHSFCAET-GVMTDELRERIRDCCRTVVAL 239

Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           E  +       G   G+ A   + Y+++IA+ R +Q+ LEP++  T++P PW++E+++  
Sbjct: 240 EDKFIELAFEMGPVEGMTADDIKNYIRYIADWRLNQLKLEPIYGVTKHPIPWLTEILNGV 299

Query: 331 KEKNFFETRVTEYQQ-GAELKW 351
           +  NFFE R TEY +   +  W
Sbjct: 300 EHANFFEQRSTEYSKGATKGDW 321


>gi|126664354|ref|ZP_01735338.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17]
 gi|126630680|gb|EBA01294.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17]
          Length = 352

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 135/337 (40%), Positives = 191/337 (56%), Gaps = 5/337 (1%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
             VNVDDKR++N  +DVNQL P KY WAWE +++A  NHW P +V M  D+  +  +  L
Sbjct: 21  APVNVDDKRVINGNTDVNQLAPFKYPWAWEYFMNANKNHWTPLDVNMSQDVHDYHHR--L 78

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
              E+ + +  L +  +S+ L   NI LA+   ++ PE + Y  RQ +EEAVH+ T+Q+ 
Sbjct: 79  NPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEAVHTWTYQHC 138

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           I +L LD+GE++N YR VP I  K   A +              KD  QEF+     F  
Sbjct: 139 IETLNLDQGEIYNRYRVVPQINGKIQMANRRLNAAMRSDINLRNKDDLQEFIMSYLFFAA 198

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           VFEG WFY GF+ I +L R   M G  EQ+QYI+RDE++H +FG+ V+NQI  E    + 
Sbjct: 199 VFEGCWFYNGFSPIFALQRRGLMRGTGEQFQYILRDEAMHFSFGLKVVNQILEEENISFD 258

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
               +  R M  E+   E  YA+  +    +G +A    +  +F+ANRR   + L   F 
Sbjct: 259 P---KAVRDMWDESEAAESDYANYILRDPILGYSAEYHIEQFRFVANRRARTVNLPEPFP 315

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
             +N  PW+ E   ++KEKNFFETRV EYQ GA+L+W
Sbjct: 316 GAKNVSPWLEEQATMRKEKNFFETRVIEYQTGAQLEW 352


>gi|157803769|ref|YP_001492318.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           canadensis str. McKiel]
 gi|157785032|gb|ABV73533.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           canadensis str. McKiel]
          Length = 324

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 150/321 (46%), Gaps = 17/321 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA++ + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++
Sbjct: 10  YKPFSYPWAYDAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +    R     E    L   +  E +H   + +++ ++G+ E E ++ + +  
Sbjct: 68  IEVNNCYMKHYSRVFKPTEILMMLSAFSNMETIHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+              D  ++    L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYMQQF------------GVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++           E 
Sbjct: 175 FNKMKGMGQVIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYGACTTIVHFED 234

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           A+       G   GL A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++  + 
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE R TEY +      W+
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315


>gi|157825769|ref|YP_001493489.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari
           str. Hartford]
 gi|157799727|gb|ABV74981.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari
           str. Hartford]
          Length = 327

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 149/321 (46%), Gaps = 17/321 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA+  + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++
Sbjct: 10  YKPFSYPWAYTAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +  
Sbjct: 68  IEVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+              D  ++    L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYIQQF------------GVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++           E 
Sbjct: 175 FNKMKGMGQIISWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           A+       G   GL A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++  + 
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE R TEY +      W+
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315


>gi|159040364|ref|YP_001539617.1| ribonucleoside-diphosphate reductase [Salinispora arenicola
           CNS-205]
 gi|157919199|gb|ABW00627.1| Ribonucleoside-diphosphate reductase [Salinispora arenicola
           CNS-205]
          Length = 350

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 107/334 (32%), Positives = 186/334 (55%), Gaps = 12/334 (3%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L+   D+  L P++Y   ++++  A  N W   EV +  DLA       L+  ER ++ 
Sbjct: 21  LLDPGMDL-TLRPMRYPHFFDRFKEAIKNTWTVEEVDLHSDLAD---LAKLSPAERHLVS 76

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   DE 
Sbjct: 77  RLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEK 136

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E    F     +PSI  KA +  ++  ++        T+   + FL +L  F    EG++
Sbjct: 137 ERFAAFAAVENIPSIARKAEFCFRWIDSIFEL-RELRTRADRRAFLLNLICFAACIEGLF 195

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  FA +  L     + G+A    ++ RDES+H+ F  DV++ I+ E P L+  + +++
Sbjct: 196 FYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTIRAEEPDLFDADLERQ 255

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + M+ EA   E  +A + + +G  GL+     +Y+Q +A+RR   +G+ P++  ++NPF
Sbjct: 256 IKDMVTEAVDCEAQFAEDLLEQGVSGLSLADMREYLQHVADRRLVTLGIAPIYG-SQNPF 314

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
            +M E+ D+++  NFFE RV+ YQ G    + +D
Sbjct: 315 AFM-ELQDVQELSNFFERRVSAYQVGVSGSVTFD 347


>gi|222475064|ref|YP_002563479.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma
           marginale str. Florida]
 gi|222419200|gb|ACM49223.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma
           marginale str. Florida]
          Length = 343

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 152/324 (46%), Gaps = 14/324 (4%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF 
Sbjct: 26  RPVYKPFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKT--KLSEQEKNLLVQIFRFFT 83

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V N  +          E    L   +  E VH   + Y++ ++G+ E E +  + 
Sbjct: 84  QADIEVNNCYMKHYSNIFKPTEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFL 142

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  K ++  ++ ++          K   +   + L VF    EG+  +  FA +L+
Sbjct: 143 KFEVMKKKYDYMQRFEES---------RKGDKRHVAKTLAVFGAFTEGLQLFASFAILLN 193

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R  KM G+ +   +  RDE+LH    I + N    EN  +W +  +++          
Sbjct: 194 FQRFGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDENLREELYGACRVIVS 253

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE  +       G   GL+A   ++Y+++IANRR  Q+ LEP++    NP PW+ E+++ 
Sbjct: 254 LEDEFIDLAFALGDVEGLSAAEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNG 313

Query: 330 KKEKNFFETRVTEYQQ-GAELKWD 352
            +  NFFE RVTEY +   E  WD
Sbjct: 314 VEHTNFFENRVTEYSRAATEGTWD 337


>gi|56416698|ref|YP_153772.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           marginale str. St. Maries]
 gi|254994906|ref|ZP_05277096.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           marginale str. Mississippi]
 gi|255003042|ref|ZP_05278006.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           marginale str. Puerto Rico]
 gi|255004164|ref|ZP_05278965.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           marginale str. Virginia]
 gi|56387930|gb|AAV86517.1| ribonuceoside-diphosphate reductase beta chain [Anaplasma marginale
           str. St. Maries]
          Length = 324

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 152/324 (46%), Gaps = 14/324 (4%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF 
Sbjct: 7   RPVYKPFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKT--KLSEQEKNLLVQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V N  +          E    L   +  E VH   + Y++ ++G+ E E +  + 
Sbjct: 65  QADIEVNNCYMKHYSNIFKPTEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  K ++  ++ ++          K   +   + L VF    EG+  +  FA +L+
Sbjct: 124 KFEVMKKKYDYMQRFEES---------RKGDKRHVAKTLAVFGAFTEGLQLFASFAILLN 174

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R  KM G+ +   +  RDE+LH    I + N    EN  +W +  +++          
Sbjct: 175 FQRFGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDENLREELYGACRVIVS 234

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE  +       G   GL+A   ++Y+++IANRR  Q+ LEP++    NP PW+ E+++ 
Sbjct: 235 LEDEFIDLAFALGDVEGLSAAEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNG 294

Query: 330 KKEKNFFETRVTEYQQ-GAELKWD 352
            +  NFFE RVTEY +   E  WD
Sbjct: 295 VEHTNFFENRVTEYSRAATEGTWD 318


>gi|255080138|ref|XP_002503649.1| predicted protein [Micromonas sp. RCC299]
 gi|226518916|gb|ACO64907.1| predicted protein [Micromonas sp. RCC299]
          Length = 324

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 94/330 (28%), Positives = 154/330 (46%), Gaps = 29/330 (8%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           ML    D   L P+K    W+ Y  A  + W   E+ +  D   W +   L D+E+  I 
Sbjct: 1   MLQDNEDRFCLFPIKEHAVWKMYKQAEASFWSAEEIDLSMDYKDWVT---LNDNEQHFIS 57

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141
             L FFA+S+ +V  N+ L   + +  PE R +   Q   E +HS T+  +I +   D  
Sbjct: 58  HVLAFFAASDGIVLENLGLRFMKDVQLPEARAFYAFQLAIENIHSETYGLLIDTYVKDSV 117

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            +  LF     VP++  KA WAL++ Q+               E   +  V +   EG++
Sbjct: 118 KKRHLFRAIHNVPTVARKAQWALKWIQS--------------SECFAERLVAFACVEGIF 163

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   F  I  L +   M G+    + I RDE LH +F   + + +K        +E    
Sbjct: 164 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSMLKHPLDPARLQE---- 219

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ +A  +E  +  + +    VG+NA    +Y++F+A+R   Q+G+E ++  T NPF
Sbjct: 220 ---IVKDAVDIEKEFVCDALSCALVGMNADLMSEYIEFVADRLMTQLGVEKVWN-TPNPF 275

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            WM E+I L+ + NFFE RV +YQ+   + 
Sbjct: 276 EWM-EMISLQGKANFFEHRVDQYQKANVMT 304


>gi|114568952|ref|YP_755632.1| ribonucleotide-diphosphate reductase subunit beta [Maricaulis maris
           MCS10]
 gi|114339414|gb|ABI64694.1| Ribonucleoside-diphosphate reductase [Maricaulis maris MCS10]
          Length = 345

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 147/320 (45%), Gaps = 18/320 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P +Y WA++ +      HWMP EVP+ +D   W +   L D ER ++ +   FF  S+
Sbjct: 18  YKPFRYPWAYDFWKKQQQVHWMPEEVPLGEDCKDWAT--KLNDGERNLLTQIFRFFTQSD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V +N +    R     E +  L   +  E +H   +  ++ ++G+ + E F+ + E  
Sbjct: 76  VEVNDNYMERYSRVFRPTEVKMMLASFSNMETIHIAAYALLLETIGMPDSE-FSAFMEYQ 134

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++  K ++  ++              + + + L+ + +F    EG+  +  FA +++  R
Sbjct: 135 AMADKHDYMQRF------------GVEDEADILRTVAMFGAFTEGLQLFASFAMLMNFPR 182

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDESLH    I + +    E     T+E +            LE 
Sbjct: 183 FNKMKGMGQIVTWSIRDESLHCEGMIKLFHAFAEET-GALTQEVKDDITECCRTVVGLED 241

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G   G+     + Y+++IA+ R  Q+GL  ++   E+P PW+SE+++  + 
Sbjct: 242 KFIDLAFEAGDVEGMTPDDIKTYIRYIADWRLGQLGLPKIYGVKEHPLPWLSEILNGVEH 301

Query: 333 KNFFETRVTEYQQ-GAELKW 351
            NFFE R TEY +   +  W
Sbjct: 302 ANFFEARATEYSKGATKGDW 321


>gi|149375674|ref|ZP_01893443.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola
           DG893]
 gi|149360076|gb|EDM48531.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola
           DG893]
          Length = 352

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 137/339 (40%), Positives = 193/339 (56%), Gaps = 5/339 (1%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           G   VNVDDKR++N  +D+NQL P KY WAWE +++A  NHW P +V M  D+  +  + 
Sbjct: 19  GPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHDYHHR- 77

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+ + +  L +  +S+ L   NI LA+   +S PE + Y  RQ +EEA+H+  +Q
Sbjct: 78  -LSAPEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEAMHTWAYQ 136

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           + I +L LD+ E++N YR VP+I  K   A +              KD  QEF+     F
Sbjct: 137 HCIETLNLDQSEIYNRYRVVPAINGKIQMANRRLDAAMRSDMNLRDKDDLQEFIMSYLFF 196

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             VFEG WFY GF+ I +L R   M G  EQ QYI+RDE++H +FG+ V+NQI  E    
Sbjct: 197 AAVFEGAWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVVNQILEEENIT 256

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
                 +  R M  E+   E AYA+  +    +G +A    +  +F+ANRR   +GLE  
Sbjct: 257 LDP---KAVRDMWDESEAAETAYANYILRDPILGYSAQYHSEQFRFVANRRARTVGLEEP 313

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           F   +N  PW+ E   L+KEKNFFETRV EYQ GA+L+W
Sbjct: 314 FPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352


>gi|320107274|ref|YP_004182864.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4]
 gi|319925795|gb|ADV82870.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4]
          Length = 346

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 100/321 (31%), Positives = 172/321 (53%), Gaps = 8/321 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   ++ +     N W   EV  Q DL   K +  LT  E   I+R + FFA+ 
Sbjct: 24  TLRPMRYPQFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LTPAEIHTIQRLVAFFATG 81

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   +  E    F   
Sbjct: 82  DSIVSNNLVLNLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDNYIPEPEERNAAFAAV 141

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI+ KA++ +++  ++        TK+  ++FL +L  F    EG++F+  FA + 
Sbjct: 142 ENIPSISKKADFCMKWMDSIQQLD-QLETKEHRRQFLLNLICFAACIEGLFFFAAFAYVY 200

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDES HL F  +V+  ++ + P LW  E +++   M+ EA 
Sbjct: 201 FFRSKGLLHGLASGTNWVFRDESAHLEFAFEVVQVVRAQEPDLWDTELERQVVVMMEEAI 260

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E  +A + +  G  GL+     QY+ ++A+ R  ++G+   F   +NPF +M E+ D+
Sbjct: 261 DAEAQFAEDLLSGGVAGLSVRDMRQYLGYVADSRLERLGIGAHFN-AKNPFSFM-ELQDV 318

Query: 330 KKEKNFFETRVTEYQQGAELK 350
           ++  NFFE RV+ YQ     +
Sbjct: 319 QELTNFFERRVSAYQTAVPGE 339


>gi|237752265|ref|ZP_04582745.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376507|gb|EEO26598.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 343

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 176/348 (50%), Gaps = 14/348 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I     + +V+++R+       + +L  +KY WA+  +     N W P EV M  D 
Sbjct: 6   RKKIYNPNSKESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDK 65

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +   +GLT +E++   R L      +SL  NN++  +  ++++PE    L+RQAFEEA
Sbjct: 66  RDY--SDGLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEA 123

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +HS ++  ++ S+  +  E++ M+R    + +K ++     + LS         +  +  
Sbjct: 124 LHSQSYAVMVESISANTDEIYEMWRTDIQLKSKNDYIANVYEELS--------VNPTESI 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L        + EG++FY+GFA   +L R+ KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 176 LLKAMFANQILEGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMINSL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E PHL+TK+  ++   M  EA  +E  +         +GL +    +Y++++A+ R  
Sbjct: 236 RKEMPHLFTKDLIEEVLEMFREAVRVESTWGEYITQGQILGLTSEIIHEYIRYLADNRLT 295

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           ++GL  L+    +P  W+       + + NFFE  VT Y +G+ + +D
Sbjct: 296 RVGLPALYN-ARHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS-INFD 341


>gi|73852496|ref|YP_293780.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi
           virus 86]
 gi|72415212|emb|CAI65449.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi
           virus 86]
          Length = 325

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 97/332 (29%), Positives = 155/332 (46%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   L P+ +   +E+Y  A  + W  +E+ +  D   W     LT++E+  
Sbjct: 3   EPLLIENKDRFVLFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDW---PKLTENEQHF 59

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+++ +V  N+V      +  PE R +   Q   E VH+ T+  ++ SL  D
Sbjct: 60  IKYILAFFATADGIVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVED 119

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LF   R + SI  KA+WAL++                ++ F + L  F VV EG
Sbjct: 120 KDEQRNLFRAIRTIQSIKNKADWALKWMN-------------NERSFAERLIAFAVV-EG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   +          +  K   
Sbjct: 166 IFFSGAFCAIFWLKKRAIMPGLTFSNELISRDEGLHTDFACMLYRNH------IIHKLPY 219

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++  A  LE  +  E +P   +G+NA S   Y++F+A+R    +G    +    N
Sbjct: 220 ETVLDIITNAVELERLFICEALPVSLIGINAESMSTYIKFVADRLLISLGYAKHYNVV-N 278

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF WM E+I L+ + NFFE RV EYQ+   + 
Sbjct: 279 PFEWM-ELISLEGKTNFFEKRVGEYQKAGVMD 309


>gi|295836584|ref|ZP_06823517.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. SPB74]
 gi|197697282|gb|EDY44215.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. SPB74]
          Length = 345

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 102/325 (31%), Positives = 175/325 (53%), Gaps = 11/325 (3%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y +A  N W   EV +  D+A       LT  E+ +I R + FFA+ 
Sbjct: 24  TLRPMRYPDFYERYRNAIKNTWTVEEVDLHSDVAD---LAKLTPGEQHLIGRLVAFFATG 80

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 81  DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRADAFAAV 140

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA +  ++   +        +K   + FL +L  F    EG++FY  FA + 
Sbjct: 141 ENIPSIREKAEFCFKWIDEVEKID-RLESKADRRRFLLNLICFAACIEGLFFYGAFAYVY 199

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H++F  DV++ ++ E P L+  E +Q+ + ML  A 
Sbjct: 200 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDAELEQEVKDMLDGAV 259

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +A +    G  G+N  S  +Y+Q +A++R  ++G  P++  + NPF +M E+  +
Sbjct: 260 NAELQFARDLCGDGLPGMNTESMREYLQCVADQRLQRLGFAPVYG-SSNPFSFM-ELQGV 317

Query: 330 KKEKNFFETRVTEYQQG--AELKWD 352
           ++  NFFE R + YQ      + +D
Sbjct: 318 QELTNFFERRPSAYQVAVEGSVSFD 342


>gi|297192180|ref|ZP_06909578.1| ribonucleoside-diphosphate reductase subunit beta protein
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720175|gb|EDY64083.1| ribonucleoside-diphosphate reductase subunit beta protein
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 340

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 103/321 (32%), Positives = 176/321 (54%), Gaps = 9/321 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ 
Sbjct: 19  TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATG 75

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 76  DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAV 135

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA++  ++  ++ S      T+   + FL +L  F    EG++FY  FA + 
Sbjct: 136 ENIPSIREKASFCFKWMDSVESID-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVY 194

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H+NF  +V++ ++ E P L+  E +Q+   ML EA 
Sbjct: 195 WFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDELRQQVTDMLKEAV 254

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +  +   +G  G+N  S  +Y+Q +A++R  ++G  P++  ++NPF +M E+  +
Sbjct: 255 EAELQFGRDLCGEGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SQNPFSFM-ELQGV 312

Query: 330 KKEKNFFETRVTEYQQGAELK 350
           ++  NFFE R + YQ   E  
Sbjct: 313 QELTNFFERRPSAYQVAVEGS 333


>gi|67459102|ref|YP_246726.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia felis
           URRWXCal2]
 gi|67004635|gb|AAY61561.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia felis
           URRWXCal2]
          Length = 327

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 149/321 (46%), Gaps = 17/321 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA+E + +    HW+P EVP+ DD+  WK    L   E+ ++ +   FF  ++
Sbjct: 10  YKPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLAPGEKHLLTQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +  
Sbjct: 68  IEVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+              D  ++    L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYMQQF------------GVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++           E 
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           A+       G   GL A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++  + 
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE R TEY +      W+
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315


>gi|190570498|ref|YP_001974856.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213019257|ref|ZP_03335064.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190356770|emb|CAQ54129.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995366|gb|EEB56007.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 329

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 156/321 (48%), Gaps = 14/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF  ++
Sbjct: 10  YKPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSNVEKNLLTQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +  
Sbjct: 68  IEVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYD 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++  K  + L++ ++          K   +   + L VF    EG+  +  FA +L+  R
Sbjct: 127 AMRKKYEYMLEFEES---------KKQDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   +  RDE+LH N  I++ N    EN  +W  EF+++  +       LE 
Sbjct: 178 FGKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNDEFKEELYSACRTIVELED 237

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G   GL+A     Y+++IANRR  Q+GL+ ++   +NP PW+ E+++  + 
Sbjct: 238 EFISLAFDLGDVEGLSAEEVRNYIRYIANRRLTQLGLKSIYNVKDNPIPWLDEILNGVEH 297

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE RVTEY +   +  W+
Sbjct: 298 TNFFENRVTEYSRAATQGTWE 318


>gi|269958883|ref|YP_003328672.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           centrale str. Israel]
 gi|269848714|gb|ACZ49358.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           centrale str. Israel]
          Length = 332

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 14/324 (4%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF 
Sbjct: 15  RPVYKPFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKT--KLSEQEKNLLVQIFRFFT 72

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V N  +          E    L   +  E VH   + Y++ ++G+ E E +  + 
Sbjct: 73  QADIEVNNCYMKHYSNIFKPTEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFL 131

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  K ++  ++ ++          K   +   + L VF    EG+  +  FA +L+
Sbjct: 132 KFEVMKKKYDYMQRFEES---------RKGDKRHVAKTLAVFGAFTEGLQLFASFAILLN 182

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R  KM G+ +   +  RDE+LH    I + N    EN  +W    + +          
Sbjct: 183 FQRFGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDANLRAELYGACRVIVS 242

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE  +       G   GL+A   ++Y+++IANRR  Q+ LEP++    NP PW+ E+++ 
Sbjct: 243 LEDEFIDLAFALGDVEGLSASEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNG 302

Query: 330 KKEKNFFETRVTEYQQ-GAELKWD 352
            +  NFFE RVTEY +   E  WD
Sbjct: 303 VEHTNFFENRVTEYSRAATEGTWD 326


>gi|307328555|ref|ZP_07607729.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger
           Tu 4113]
 gi|306885823|gb|EFN16835.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger
           Tu 4113]
          Length = 340

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 105/334 (31%), Positives = 180/334 (53%), Gaps = 10/334 (2%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D K +L+   ++  L P++Y   +++Y  A  N W   EV +  D+        L+  E+
Sbjct: 7   DTKNLLDPGFEL-TLRPMRYPEFYDRYRDAIKNTWTVEEVDLHSDVTD---LAKLSPGEQ 62

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            +I R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +  
Sbjct: 63  HLIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYL 122

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  +    F     +PSI  KA +  ++  ++        TK   + FL +L  F    
Sbjct: 123 PDPDDRAAAFAAVENIPSIREKAEFCFRWMDSVEKID-RLETKQDRRRFLLNLICFAACI 181

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY  FA +  L     + G+A    ++ RDES+H+ F   V++ ++ E P L+  E
Sbjct: 182 EGLFFYGAFAYVYWLRSRGLLHGLATGTNWVFRDESMHMEFAFSVVDTVREEEPDLFDDE 241

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            +Q+   ML EA   E+ +A +    G  G+N  S ++Y+Q +A++R  ++G   +F  +
Sbjct: 242 LRQQVTDMLKEAVEAELQFARDLCGDGLPGMNTASMQEYLQCVADQRLMRLGFPAVFG-S 300

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           ENPF +M E+ ++++  NFFE R + YQ   E  
Sbjct: 301 ENPFSFM-ELQNVQELTNFFERRASAYQVAVEGS 333


>gi|283481249|emb|CAZ69365.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi
           virus 99B1]
          Length = 325

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 97/332 (29%), Positives = 155/332 (46%), Gaps = 28/332 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   L P+ +   +E+Y  A  + W  +E+ +  D   W     LT++E+  
Sbjct: 3   EPILIENEDRFVLFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDW---PKLTENEQHF 59

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+++ +V  N+V      +  PE R +   Q   E VH+ T+  ++ SL  D
Sbjct: 60  IKYILAFFATADGVVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVED 119

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LF   R + SI  KA+WAL++                ++ F + L  F VV EG
Sbjct: 120 KDEQRNLFRAIRTIQSIKNKADWALKWMN-------------NERSFAERLIAFAVV-EG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE LH +F   +          +  K   
Sbjct: 166 IFFSGAFCAIFWLKKRAIMPGLTFSNELISRDEGLHTDFACMLYRNH------IIHKLPY 219

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++  A  LE  +  E +P   +G+NA S   Y++F+A+R    +G    +    N
Sbjct: 220 ETVLDIITNAVELERLFICEALPVSLIGINAESMSTYIKFVADRLLISLGYAKHYNVV-N 278

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           PF WM E+I L+ + NFFE RV EYQ+   + 
Sbjct: 279 PFEWM-ELISLEGKTNFFEKRVGEYQKAGVMD 309


>gi|253827828|ref|ZP_04870713.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313142391|ref|ZP_07804584.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           canadensis MIT 98-5491]
 gi|253511234|gb|EES89893.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313131422|gb|EFR49039.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           canadensis MIT 98-5491]
          Length = 341

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 96/348 (27%), Positives = 181/348 (52%), Gaps = 14/348 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I       +V+++R+       + +L  +KY WA+  +     N W P EV M  D 
Sbjct: 4   RKKIYNPSSNESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDK 63

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +   +GLT +E++   R L      +SL  NN++  +  ++++PE    L+RQAFEEA
Sbjct: 64  RDYA--DGLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEA 121

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +HS ++  ++ S+  +  E+++M+R    + AK ++  +  + L+         +  +  
Sbjct: 122 LHSQSYAVMVESISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLA--------TNPIERN 173

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           +        + EG++FY+GFA   +L R+ KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 174 IIKAMFANQILEGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINSV 233

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E+P L+TK+ +++   M  EA  +E A+         +GL +   ++Y++++A+ R  
Sbjct: 234 KKESPELFTKDLEEEVIEMFREAVKVETAWGEYITQGQILGLTSEIIQEYIKYLADERLR 293

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +IGL  L+   ++P  W+       + + NFFE  VT Y +G+ + +D
Sbjct: 294 RIGLPTLYN-AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS-INFD 339


>gi|330467634|ref|YP_004405377.1| ribonucleoside-diphosphate reductase [Verrucosispora maris
           AB-18-032]
 gi|328810605|gb|AEB44777.1| Ribonucleoside-diphosphate reductase [Verrucosispora maris
           AB-18-032]
          Length = 342

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 109/334 (32%), Positives = 185/334 (55%), Gaps = 12/334 (3%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L+   D+  L P++Y   ++++  A  N W   EV +  DLA       L+  E+ ++ 
Sbjct: 13  LLDPGMDL-TLRPMRYPQFFDRFKDAIRNTWTVEEVDLHADLAD---LAKLSPAEQHLVS 68

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE- 142
           R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   DE 
Sbjct: 69  RLVAFFATGDTIVANNLVLNLYQHINSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEK 128

Query: 143 --GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              E F     +PSI  KA +  ++  ++        T+   + FL +L  F    EG++
Sbjct: 129 QRYEAFAAVENIPSIARKAEFCFKWIDSIFEL-RELKTRADRRAFLLNLICFAACIEGLF 187

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  FA +  L     + G+A    ++ RDES+H+ F  DV++ ++ E P L+  E +Q+
Sbjct: 188 FYGAFAYVYFLRSRGVLHGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDAEMEQQ 247

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R ML EA   E+ +A + + +G  G+      QY+Q +A+RR   +G+ P++  + NPF
Sbjct: 248 VRDMLAEAVDCEVQFAADLLEQGVSGMPLADMRQYLQHVADRRLAMLGIAPMYG-STNPF 306

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
            +M E+ D+++  NFFE RV+ YQ G    + +D
Sbjct: 307 AFM-ELQDVQELSNFFERRVSAYQVGVTGTVAFD 339


>gi|256825983|ref|YP_003149943.1| ribonucleotide reductase subunit beta [Kytococcus sedentarius DSM
           20547]
 gi|256689376|gb|ACV07178.1| ribonucleotide reductase, beta subunit [Kytococcus sedentarius DSM
           20547]
          Length = 365

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 107/325 (32%), Positives = 177/325 (54%), Gaps = 10/325 (3%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E +  A  N W   E+ +  DLA     N L+  ER ++ R + FFA+ 
Sbjct: 43  TLRPMRYPQFYEMFRDAIKNTWTVEEIDLHSDLADLH--NKLSPAERHLVSRLVAFFATG 100

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--- 149
           +++VANN+VL +Y H+++PE R YL RQ FEEAVH   +  ++ +   DE E F  +   
Sbjct: 101 DTIVANNLVLNLYEHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYVPDEAERFEAFAAV 160

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA +   +  ++ +      TK+  ++FL +L  F    EG++FY  FA + 
Sbjct: 161 ENIPSIRTKAEFCFTWIDSIENLG-QLETKEQRRQFLLNLICFGTCIEGLFFYGAFAYVY 219

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L     + G+A    ++ RDES+H+ F  +V+  ++ E P L+  E   + R ML EA 
Sbjct: 220 FLRSRGLLNGLASGTNWVFRDESMHMAFAFEVVETVRSEEPDLFDAEMAGQVRQMLMEAV 279

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E  +A + +  G  GL+      Y++ +A+RR  Q+G+  ++  T+NP  +M E+ D+
Sbjct: 280 DAEAQFAEDLLGMGVAGLSVADMRAYLENVADRRAVQLGMPEIYG-TKNPLAFM-ELQDV 337

Query: 330 KKEKNFFETRVTEYQQG--AELKWD 352
           ++  NFFE RV+ YQ G    + +D
Sbjct: 338 QELSNFFERRVSAYQVGVEGSVSFD 362


>gi|197103810|ref|YP_002129187.1| ribonucleoside-diphosphate reductase, beta subunit
           [Phenylobacterium zucineum HLK1]
 gi|196477230|gb|ACG76758.1| ribonucleoside-diphosphate reductase, beta subunit
           [Phenylobacterium zucineum HLK1]
          Length = 350

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 79/322 (24%), Positives = 140/322 (43%), Gaps = 18/322 (5%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
               P +Y WA++ +      HWMP E+P+ +DL  W S   L D ER ++ +   FF  
Sbjct: 20  FAYKPFRYPWAYDYWKKQQQVHWMPEEIPLGEDLKDWAS--KLNDRERNLLTQIFRFFTQ 77

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
           S+  V +N +    R     E +  L   +  E +H   +  ++ ++G+ + E F  + +
Sbjct: 78  SDVEVNDNYMERYARVFKPTEVKMMLAAFSNMETIHIAAYALLLETIGMPDAE-FTAFLD 136

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
             ++  K ++   +              D   +  + L +F    EG+  +  FA +++ 
Sbjct: 137 YQAMRDKHDYMQSF------------GVDTHADICRTLAMFGGFTEGLQLFASFAMLMNF 184

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            R NKM G+ +   + +RDESLH    I + +    E     T+               L
Sbjct: 185 PRHNKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKET-GAVTQAVADDIVDCCKTVVGL 243

Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           E  +       G   G+     +QY++FIA+ R  Q+ L  ++   ENP PW+  ++   
Sbjct: 244 EDKFIDLAFEAGEVQGMTPDDIKQYIRFIADWRLKQLHLPQVYGIKENPLPWLQSMLSGV 303

Query: 331 KEKNFFETRVTEYQQ-GAELKW 351
           +  NFFE R TEY +   + +W
Sbjct: 304 EHANFFEARATEYSKAATKGQW 325


>gi|313115920|ref|ZP_07801347.1| ribonucleoside-diphosphate reductase, beta subunit
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621684|gb|EFQ05212.1| ribonucleoside-diphosphate reductase, beta subunit
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 347

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 156/350 (44%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   E   +V  +RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +S+   N+   I  +++  E    L  QAF+E V
Sbjct: 67  DY---PRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++         + R       K +  L    T     +    +  D   L
Sbjct: 123 HSQSYSYMLDTICSP------VERNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  Q  R M+ E    EIA+ H  +     GLN      Y++++ N R   
Sbjct: 237 KEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 296

Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G   L+           W+S+  D    + +FFE R T Y +   L  D
Sbjct: 297 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 346


>gi|310823070|ref|YP_003955428.1| ribonucleoside-diphosphate reductase subunit beta [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396142|gb|ADO73601.1| Ribonucleoside-diphosphate reductase, beta subunit [Stigmatella
           aurantiaca DW4/3-1]
          Length = 336

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 105/326 (32%), Positives = 173/326 (53%), Gaps = 9/326 (2%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LNA  ++  L P+ Y   +E Y +A  N W   EV    DL   +S   +TD ER +I 
Sbjct: 2   LLNAGMNL-TLRPMAYPVFFEMYRNAIKNTWTVEEVDFSTDLVDLRS--KMTDAERHLIH 58

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H   +  ++ +   D  
Sbjct: 59  RLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPA 118

Query: 144 ---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              + F     +PSI  KA + L++  ++   +    T++  + FL +L  F    EG++
Sbjct: 119 DRAKAFAAIDNIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLLNLICFAGCIEGLF 177

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F+  FA +  L     + G+A    ++ RDES H+ F  + I   + E P L+    Q  
Sbjct: 178 FFAAFAYVYFLRSKGLLHGLAAGTNWVFRDESTHMAFAFEAIRVARQEEPDLFDARMQAD 237

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              M+ EA   E  +A + +  G  GL+     QY++++A++R   +GL P+F+  +N  
Sbjct: 238 VVAMMREAVECETLFAQDLLSGGVAGLSVQEMRQYLEYVADQRLTMLGLAPVFRV-KNSL 296

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
           P+M  + D+++  NFFE RV+ YQ  
Sbjct: 297 PFMD-LQDVQELTNFFERRVSAYQVA 321


>gi|224418874|ref|ZP_03656880.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           canadensis MIT 98-5491]
          Length = 340

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 96/348 (27%), Positives = 181/348 (52%), Gaps = 14/348 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I       +V+++R+       + +L  +KY WA+  +     N W P EV M  D 
Sbjct: 3   RKKIYNPSSNESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDK 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +   +GLT +E++   R L      +SL  NN++  +  ++++PE    L+RQAFEEA
Sbjct: 63  RDYA--DGLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEA 120

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +HS ++  ++ S+  +  E+++M+R    + AK ++  +  + L+         +  +  
Sbjct: 121 LHSQSYAVMVESISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLA--------TNPIERN 172

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           +        + EG++FY+GFA   +L R+ KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 173 IIKAMFANQILEGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINSV 232

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E+P L+TK+ +++   M  EA  +E A+         +GL +   ++Y++++A+ R  
Sbjct: 233 KKESPELFTKDLEEEVIEMFREAVKVETAWGEYITQGQILGLTSEIIQEYIKYLADERLR 292

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +IGL  L+   ++P  W+       + + NFFE  VT Y +G+ + +D
Sbjct: 293 RIGLPTLYN-AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS-INFD 338


>gi|15892574|ref|NP_360288.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           conorii str. Malish 7]
 gi|34580440|ref|ZP_00141920.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia
           sibirica 246]
 gi|157828524|ref|YP_001494766.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933242|ref|YP_001650031.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           rickettsii str. Iowa]
 gi|229586746|ref|YP_002845247.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           africae ESF-5]
 gi|238650260|ref|YP_002916112.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           peacockii str. Rustic]
 gi|15619738|gb|AAL03189.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia conorii
           str. Malish 7]
 gi|28261825|gb|EAA25329.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia
           sibirica 246]
 gi|157801005|gb|ABV76258.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908329|gb|ABY72625.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia
           rickettsii str. Iowa]
 gi|228021796|gb|ACP53504.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia africae
           ESF-5]
 gi|238624358|gb|ACR47064.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           peacockii str. Rustic]
          Length = 328

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 89/321 (27%), Positives = 151/321 (47%), Gaps = 17/321 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA+E + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++
Sbjct: 10  YKPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +  
Sbjct: 68  IEVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+              DA ++    L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYMQQF------------GVDAKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++           E 
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           A+       G   GL A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++  + 
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE R TEY +      W+
Sbjct: 295 TNFFENRTTEYSKAATTGSWE 315


>gi|31322342|gb|AAP15464.1| ribonucleotide reductase small subunit [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 336

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 90/327 (27%), Positives = 153/327 (46%), Gaps = 21/327 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK------SKNGLTDDERLMIKRNLG 87
             P  Y WA+E + +    HW+P EVP+ DD+  WK       K+ LT  E+ ++ +   
Sbjct: 10  YKPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKYNLTPGEKHLLTPGEKHLLTQIFR 69

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147
           FF  ++  V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++
Sbjct: 70  FFTQADIEVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YS 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            + +   +  K ++  Q+              DA ++    L VF    EG+  +  FA 
Sbjct: 129 AFLKYKEMKDKYDYMQQF------------GVDAKEDIATTLAVFGAFTEGLQLFASFAI 176

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           +L+  R NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++       
Sbjct: 177 MLNFPRFNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTT 236

Query: 268 ATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
               E A+       G   GL A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+
Sbjct: 237 IVHFEDAFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEM 296

Query: 327 IDLKKEKNFFETRVTEYQQ-GAELKWD 352
           ++  +  NFFE R TEY +      W+
Sbjct: 297 LNGVEHTNFFENRTTEYSKAATTGSWE 323


>gi|157953769|ref|YP_001498660.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068417|gb|ABU44124.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella
           virus AR158]
          Length = 324

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 164/334 (49%), Gaps = 29/334 (8%)

Query: 21  DKRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            + +L+          P++Y   W+ Y  A    W   EVP+  D+  W+    L DDER
Sbjct: 4   QEPILSDNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWRE--KLNDDER 61

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             IK  LGFFA S+ +V  N+       ++ PE RQ+   Q F E++HS  +  +I +L 
Sbjct: 62  HFIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDALI 121

Query: 140 LDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            DE    ELF+    +P++  KA WA ++ +               + F + L  + V  
Sbjct: 122 SDEQERNELFDAIENIPAVHNKAKWAQKWLE-------------PGKSFAERLVAW-VCV 167

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG+ F   F  I  L     M G+    ++I RDE LH  FG  + ++++ + P      
Sbjct: 168 EGILFSGSFCAIFWLRNKGVMPGLGLSNEFISRDEGLHQQFGELMYSKLQNKLPF----- 222

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             +  + ++ EA   E  +  + +P   +G+N+    QY++F+A+R    +G E ++  +
Sbjct: 223 --ETVKQIITEAVENEKEFICDAIPCRLIGMNSELMGQYIEFVADRIFIALGYEKVYN-S 279

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +NPF +M E+I L+ + NFFE RV++YQ+   +K
Sbjct: 280 KNPFAFM-ELISLQGKTNFFEKRVSDYQRPGVMK 312


>gi|302542646|ref|ZP_07294988.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460264|gb|EFL23357.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 343

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 101/325 (31%), Positives = 174/325 (53%), Gaps = 11/325 (3%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +++Y  A  N W   EV +  D+A       L+  E+ MI R + FFA+ 
Sbjct: 22  TLRPMRYPQFYDRYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMISRLVAFFATG 78

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMY 149
           +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 79  DSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAASFAAV 138

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA +  ++  ++        +K   + FL +L  F    EG++FY  FA + 
Sbjct: 139 ENIPSIREKAEFCFRWMDSVEKID-RLESKADRRRFLLNLICFAACIEGLFFYGAFAYVY 197

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDES+H+ F   V++ ++ E P L+  + +++   ML EA 
Sbjct: 198 WFRSRGLLHGLATGTNWVFRDESMHMEFAFSVVDTVREEEPDLFDDDLERQVTDMLKEAV 257

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +AH+    G  G+N  S   Y++ +A++R  ++G   +F  +ENPF +M E+ D+
Sbjct: 258 EAELQFAHDLCGDGLPGMNTESMRAYLECVADQRLARLGFPAVFG-SENPFSFM-ELQDV 315

Query: 330 KKEKNFFETRVTEYQQG--AELKWD 352
           ++  NFFE R + YQ      + +D
Sbjct: 316 QELTNFFERRASAYQVAVEGSVSFD 340


>gi|313844096|ref|YP_004061759.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1]
 gi|312599481|gb|ADQ91503.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1]
          Length = 408

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 91/339 (26%), Positives = 156/339 (46%), Gaps = 28/339 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           V  + + +L    +   + PLKY   WE Y  A  ++W   EV +  DL  WK+   L +
Sbjct: 88  VEEEYEPLLAPTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 144

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+  IK  L FFA S+ +V  NI       + + E R +   Q   E VH  T+  +I 
Sbjct: 145 NEKKFIKYILAFFAGSDGIVFENINNNFADEVQSSEARSFYAYQCHNEMVHGETYSKLID 204

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
               D  E   LF   + VP I  KA+WA+++              D       +    +
Sbjct: 205 KYIKDGAEKKQLFEAIQTVPCIQKKADWAMKW-------------FDTKSRSFAERLFAF 251

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  I  L +   M G+    + I RDE LH  F +++   ++       
Sbjct: 252 ACVEGIFFSGSFCAIYWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKLLR------- 304

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K   +   +++ EA  +E  +  + +P   +G+N+    +Y++++++R   QIG+ P++
Sbjct: 305 IKPTTETIHSIVKEAVEIEKGFILDALPCALIGMNSEKMSEYIEYVSDRLLKQIGVPPIW 364

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ++NPF +M E I L  + NFFE RV +Y +  +   +
Sbjct: 365 N-SKNPFDFM-ENISLDGKTNFFEKRVGDYGKMDDTSDE 401


>gi|295103295|emb|CBL00839.1| Ribonucleotide reductase, beta subunit [Faecalibacterium
           prausnitzii SL3/3]
          Length = 347

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 156/350 (44%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   E   +V  +RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +S+   N+   I  +++  E    L  QAF+E V
Sbjct: 67  DY---PRLLSTERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++         + R       K +  L    T     +    +  D   L
Sbjct: 123 HSQSYSYMLDTICSP------VERNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  Q  R M+ E    EIA+ H  +     GLN      Y++++ N R   
Sbjct: 237 KEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 296

Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G   L+           W+S+  D    + +FFE R T Y +   L  D
Sbjct: 297 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 346


>gi|18311342|ref|NP_563276.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           perfringens str. 13]
 gi|110801267|ref|YP_697050.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           perfringens ATCC 13124]
 gi|168205189|ref|ZP_02631194.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens E str. JGS1987]
 gi|168210336|ref|ZP_02635961.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|168213271|ref|ZP_02638896.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens CPE str. F4969]
 gi|168216675|ref|ZP_02642300.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens NCTC 8239]
 gi|169347055|ref|ZP_02865997.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens C str. JGS1495]
 gi|182625797|ref|ZP_02953564.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens D str. JGS1721]
 gi|18146026|dbj|BAB82066.1| ribonucleoside-diphosphate reductase beta subunit [Clostridium
           perfringens str. 13]
 gi|110675914|gb|ABG84901.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens ATCC 13124]
 gi|169296738|gb|EDS78867.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens C str. JGS1495]
 gi|170663363|gb|EDT16046.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170711548|gb|EDT23730.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170715235|gb|EDT27417.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens CPE str. F4969]
 gi|177908953|gb|EDT71440.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens D str. JGS1721]
 gi|182381151|gb|EDT78630.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens NCTC 8239]
          Length = 344

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 105/347 (30%), Positives = 170/347 (48%), Gaps = 13/347 (3%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+      +  + K+M+N  + ++N    +KY W  E Y  A NN W+P E+ +  DL  
Sbjct: 7   PLFNEFGDIETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKD 66

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +K    LT +E+    + L F    +S+   N +  I  +++  E    L  QAF+EAVH
Sbjct: 67  YK---KLTKEEKTAYDKILSFLIFLDSIQTAN-LGNINSYITASEVNLCLTIQAFQEAVH 122

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ S+   E       R       K +  L          +    +D+  E   
Sbjct: 123 SQSYSYMLDSICSPEE------RNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSMENFI 176

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
              +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL     +I ++K 
Sbjct: 177 KSVMANYILEGVYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRSIIKELKE 236

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P ++TKE +++ R M+      EIA+ H  +     G+N    E+Y+++I N R   I
Sbjct: 237 EIPEVFTKELKEELREMVRTGVEHEIAWGHYVIGDNVTGINKNLIERYIKYIGNLRVKAI 296

Query: 308 GLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           GLEPLF+ Y ENP PW+    D  + + +FFE + T Y +   L  D
Sbjct: 297 GLEPLFEGYNENPAPWVDYYADANQVKTDFFEAKSTAYAKAGALIDD 343


>gi|42520108|ref|NP_966023.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58696705|ref|ZP_00372253.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58698234|ref|ZP_00373154.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630036|ref|YP_002726827.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp.
           wRi]
 gi|42409845|gb|AAS13957.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|58535261|gb|EAL59340.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58537117|gb|EAL60231.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592017|gb|ACN95036.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp.
           wRi]
          Length = 329

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 154/321 (47%), Gaps = 14/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA++ +L     HW+P EVP+ DD+  WK+   L+  E+ ++ +   FF  ++
Sbjct: 10  YKPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSSVEKNLLTQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +  
Sbjct: 68  IEVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYD 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++  K  + L++ ++          K   +   + L VF    EG+  +  FA +L+  R
Sbjct: 127 AMRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   +  RDE+LH N  I + N    EN  +W  EF+++  +       LE 
Sbjct: 178 FGKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELED 237

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G   GL+A     Y++++ANRR  Q+GLE ++   +NP PW+ E+++  + 
Sbjct: 238 EFIKLAFDLGDVEGLSAEEVRNYIRYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEH 297

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE RVTEY +   +  W+
Sbjct: 298 TNFFENRVTEYSRAATQGTWE 318


>gi|318060206|ref|ZP_07978929.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actG]
 gi|318077113|ref|ZP_07984445.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actF]
 gi|333024515|ref|ZP_08452579.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptomyces sp. Tu6071]
 gi|332744367|gb|EGJ74808.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptomyces sp. Tu6071]
          Length = 345

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 174/325 (53%), Gaps = 11/325 (3%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D++       LT  E+ +I R + FFA+ 
Sbjct: 24  TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVSD---LAKLTPGEQHLIGRLVAFFATG 80

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 81  DSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 140

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI AKA +  ++   +        ++   + FL +L  F    EG++FY  FA + 
Sbjct: 141 ENIPSIRAKAEFCFKWIDEVEKID-RLESRSDRRRFLLNLICFAACIEGLFFYGAFAYVY 199

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H++F  DV++ ++ E P L+  + + + + ML  A 
Sbjct: 200 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLEAEVKEMLAGAV 259

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +A +    G  G+N  S  +Y+Q +A++R  ++G  P++  + NPF +M E+  +
Sbjct: 260 DAELQFARDLCGDGLPGMNTESMREYLQCVADQRLVRLGFSPVYG-SSNPFSFM-ELQGV 317

Query: 330 KKEKNFFETRVTEYQQG--AELKWD 352
           ++  NFFE R + YQ      + +D
Sbjct: 318 QELTNFFERRPSAYQVAVEGSVSFD 342


>gi|315497476|ref|YP_004086280.1| ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB
           48]
 gi|315415488|gb|ADU12129.1| Ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB
           48]
          Length = 350

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/320 (26%), Positives = 143/320 (44%), Gaps = 18/320 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P +Y WA++ +      HW+P EVP+ +D+  W S   L D+ER ++ +   FF  S+
Sbjct: 21  YKPFRYPWAFDFWQKQQQVHWLPEEVPLGEDVKDWAS--KLNDNERNLLTQIFRFFTQSD 78

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V +N +    R     E +  L   A  E VH   +  ++ ++G+ E E F  + E  
Sbjct: 79  IEVQDNYMEKYGRVFKPTEIKMMLSAFANMETVHIAAYALLLETIGMPEAE-FGAFMEYE 137

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++  K N+  ++              D D +  + L +F    EG+  +  FA +++  R
Sbjct: 138 AMRDKHNFMQKF------------GVDTDADICRTLAMFGGFTEGLQLFASFAMLMNFPR 185

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDESLH    I + +    E     TK               LE 
Sbjct: 186 FNKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKET-GAVTKAVADDIVDCCKTVVSLED 244

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +   +   G   G+     +QY+++IA+ R  Q+ L  +F   ENP PW+  ++   + 
Sbjct: 245 KFIDLSFEMGPVEGMTPDDIKQYIRYIADWRLRQLELPEVFGVQENPLPWLQVLLSGVEH 304

Query: 333 KNFFETRVTEYQQ-GAELKW 351
            NFFE R TEY +   +  W
Sbjct: 305 ANFFEARATEYSKAATKGSW 324


>gi|62866936|gb|AAY17359.1| ribonucleotide reductase small subunit [Haemonchus contortus]
          Length = 374

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/334 (26%), Positives = 156/334 (46%), Gaps = 23/334 (6%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +++ +L    +   + PLKY   W  Y  A  + W   EV +  D+A W+    +TD+ER
Sbjct: 48  EEEPLLRENPNRFVIFPLKYHDIWAFYKKAVASFWTVEEVDLAKDMADWE---KMTDNER 104

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  +  +I +  
Sbjct: 105 FFISRVLAFFAASDGIVNENLVERFSKEVQVPEARFFYGSQIAIENIHSEMYSKLIETYI 164

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            DE E   LFN   EVP I  KA WA++            G +     F + +  F  V 
Sbjct: 165 RDEKERNILFNAIFEVPCIAKKAEWAVK-----------MGLQTITAPFAERVIAFAAVG 213

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
             ++     A   S  +     G    + + +    +  + G+  I+ +     H+  K 
Sbjct: 214 GNIFSLGPVAIPFSGLKKK---GDWRGWSHSILRSLIQGDEGVHAISHVCCIQ-HIKNKL 269

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            Q++   ++ +A  +E  +  E++P   +G+N     QY++++A+    ++G E + K +
Sbjct: 270 SQERIYYIIRDAVAIEQEFLSESLPVDMIGMNCRLMCQYIEYVADHLLVELGCEKICK-S 328

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +NPF +M E I +  + NFFE +V+EYQ+   L 
Sbjct: 329 KNPFDFM-ENISIDGKTNFFEKKVSEYQRPGVLS 361


>gi|110802082|ref|YP_699620.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           perfringens SM101]
 gi|110682583|gb|ABG85953.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           perfringens SM101]
          Length = 344

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 105/347 (30%), Positives = 170/347 (48%), Gaps = 13/347 (3%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+      +  + K+M+N  + ++N    +KY W  E Y  A NN W+P E+ +  DL  
Sbjct: 7   PLFNEFGDIETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKD 66

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +K    LT +E+    + L F    +S+   N +  I  +++  E    L  QAF+EAVH
Sbjct: 67  YK---KLTKEEKAAYDKILSFLIFLDSIQTAN-LGNINSYITASEVNLCLTIQAFQEAVH 122

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ S+   E       R       K +  L          +    +D+  E   
Sbjct: 123 SQSYSYMLDSICSPEE------RNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSIENFI 176

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
              +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL     +I ++K 
Sbjct: 177 KSVMANYILEGVYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRSIIKELKE 236

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P ++TKE +++ R M+      EIA+ H  +     G+N    E+Y+++I N R   I
Sbjct: 237 EIPEVFTKELKEELREMMRTGVEHEIAWGHYVIGDNVTGINKNLIERYIKYIGNLRAKAI 296

Query: 308 GLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           GLEPLF+ Y ENP PW+    D  + + +FFE + T Y +   L  D
Sbjct: 297 GLEPLFEGYNENPAPWVDYYADANQVKTDFFEAKSTAYAKAGALIDD 343


>gi|302521843|ref|ZP_07274185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. SPB78]
 gi|302430738|gb|EFL02554.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
           sp. SPB78]
          Length = 345

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 174/325 (53%), Gaps = 11/325 (3%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D++       LT  E+ +I R + FFA+ 
Sbjct: 24  TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVSD---LAKLTPGEQHLIGRLVAFFATG 80

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 81  DSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 140

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI AKA +  ++   +        ++   + FL +L  F    EG++FY  FA + 
Sbjct: 141 ENIPSIRAKAEFCFKWIDEVEKID-RLESQSDRRRFLLNLICFAACIEGLFFYGAFAYVY 199

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H++F  DV++ ++ E P L+  + + + + ML  A 
Sbjct: 200 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLEAEVKEMLAGAV 259

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +A +    G  G+N  S  +Y+Q +A++R  ++G  P++  + NPF +M E+  +
Sbjct: 260 DAELQFARDLCGDGLPGMNTESMREYLQCVADQRLVRLGFSPVYG-SSNPFSFM-ELQGV 317

Query: 330 KKEKNFFETRVTEYQQG--AELKWD 352
           ++  NFFE R + YQ      + +D
Sbjct: 318 QELTNFFERRPSAYQVAVEGSVSFD 342


>gi|296282225|ref|ZP_06860223.1| ribonucleotide-diphosphate reductase subunit beta [Citromicrobium
           bathyomarinum JL354]
          Length = 354

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 81/323 (25%), Positives = 152/323 (47%), Gaps = 18/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y WA++ +      HWMP EVP+ +D   W     L++ ER ++ +   FF 
Sbjct: 7   RKTYKPFEYPWAYDFWKRQQQVHWMPEEVPLGEDCRDWAQ--KLSEHERNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V +       R     E +  L   +  E +H   + +++ ++G+ E E + M+ 
Sbjct: 65  QADVEVQDCYHEKYGRVFKPTEIKMMLASFSNMETIHIAAYSHLLDTIGMPESE-YGMFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  K ++  Q+              D D++  + L  F    EGM  +  FA +++
Sbjct: 124 EYEEMKDKHDYLQQF------------GVDTDEDIARTLAAFGGFTEGMQLFASFAMLMN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   + +RDESLH    I + ++   E    +TK  ++    +  ++  
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDESLHCEGIIRLFHEFVRERD-CYTKAVKEDIIDICQKSVR 230

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE  +       G   G+ A   ++Y+++IA+ R  Q+GL+P++   E+P PW++ +++ 
Sbjct: 231 LEDNFIDLAFEMGPVSGMTAKEIKKYIRYIADWRLGQLGLQPIYMIDEHPLPWLTPLLNG 290

Query: 330 KKEKNFFETRVTEYQQ-GAELKW 351
            +  NFFE R TEY +   +  W
Sbjct: 291 VEHANFFEQRATEYSKGATKGDW 313


>gi|254418345|ref|ZP_05032069.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas
           sp. BAL3]
 gi|196184522|gb|EDX79498.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas
           sp. BAL3]
          Length = 349

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/320 (25%), Positives = 142/320 (44%), Gaps = 18/320 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P +Y WA++ +      HWMP EVP+ +D+  W S   L D+ER ++ +   FF  ++
Sbjct: 22  YKPFRYPWAFDMWKKQQQVHWMPEEVPLGEDVKDWAST--LNDNERNLLTQIFRFFTQAD 79

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V +N +    R     E +  L      E +H   +  ++ ++G+ E E F  + E  
Sbjct: 80  IEVQDNYMERYGRVFKPTEIKMMLAAFGNMETIHIAAYALLLETIGMPESE-FGAFMEYE 138

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++  K ++  Q+              D+D +  + L +F    EG+  +  FA +++  R
Sbjct: 139 AMRDKHDYMGQF------------GVDSDADICRTLAMFGGFSEGVQLFASFAMLMNFPR 186

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDESLH    I + +    E     TK               +E 
Sbjct: 187 QNKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKET-GAVTKAVADDIVDCCKTVVNMED 245

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G   G+     +QY++FIA+ R  Q+ L  ++   ENP PW+  ++   + 
Sbjct: 246 RFIDLAFEMGSVQGMTPEDIKQYIRFIADWRLRQLKLPEVYGVKENPLPWLQSLLSGVEH 305

Query: 333 KNFFETRVTEYQQ-GAELKW 351
            NFFE R TEY +   +  W
Sbjct: 306 ANFFEARATEYSKAATQGNW 325


>gi|317472120|ref|ZP_07931452.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA]
 gi|316900524|gb|EFV22506.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA]
          Length = 347

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/350 (25%), Positives = 161/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +V  +RM+N  + ++N    +KY W    Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPYGDTDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    L++ ER    + L F    +S+   N+   I  +++  E    L  QAF+EAV
Sbjct: 67  DYKQ---LSEPERRAYDKILSFLIFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L          +     + + E  
Sbjct: 123 HSQSYSYMLDTICEP------QERNDILYQWKNDPHLLERNQFIGDLYNDFQTNKNTETF 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    +LGR ++M G  ++ +YI RDE+ HL    +++ ++K
Sbjct: 177 VKTLVANYILEGIYFYSGFMFFYNLGRNHRMPGSVQEIRYINRDENTHLWLFKNILLELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+  +     R M+ +    EI + H  +     GL     E+Y++++ N RC  
Sbjct: 237 KEEPSLFHPDCINDYRRMIKKGCEQEIRWGHYVIGDEIQGLKKEMVEEYIRYLGNLRCQN 296

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G EP++  +E       W+S+  +    + +FFE + T Y + + L  D
Sbjct: 297 LGFEPIYPGSETEPESMSWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 346


>gi|266623614|ref|ZP_06116549.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           hathewayi DSM 13479]
 gi|288864591|gb|EFC96889.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           hathewayi DSM 13479]
          Length = 346

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 96/351 (27%), Positives = 163/351 (46%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
             P+   +   +V ++RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+
Sbjct: 6   RKPLFNPDGDTDVRNRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWVPEEINLGPDV 65

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     L   ER    + L F    +S+   N+  AI  +++  E    L  Q F+EA
Sbjct: 66  KDY---PMLDAGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQTFQEA 121

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ ++           R       K +  L    T     +    KD     
Sbjct: 122 VHSQSYSYMLDTICEP------QTRNEVLYQWKNDEHLLARNTFIGNLYNEFQKDKSPFT 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                V   + EG++FY+GF    +LGR +KM G A++ +YI RDE+ HL    ++I ++
Sbjct: 176 FMKTVVANFILEGVYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFRNMILEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P L+T +     R M+ E    EIA+ H  +     GL       Y+Q++ N RC 
Sbjct: 236 KNEEPELFTPDRVDVYREMIKEGCRQEIAWGHYAIGDKVPGLTKDMITDYIQYLGNLRCM 295

Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +G EP+++ + + P    W+S+  +    + +FFE R T Y + + L  D
Sbjct: 296 SLGFEPIYEGHEKEPESMAWVSQYSNANMIKTDFFEARSTAYAKSSALVDD 346


>gi|291562343|emb|CBL41159.1| Ribonucleotide reductase, beta subunit [butyrate-producing
           bacterium SS3/4]
          Length = 346

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 156/350 (44%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   E  ++V  +RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 6   KPLFNPEGNLDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +S+   N+   I  +++  E    L  QAF+E V
Sbjct: 66  DY---PRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++         + R       K +  L    T     +    +  D   L
Sbjct: 122 HSQSYSYMLDTICSP------VERNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 176 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T    Q  R M+ E    EIA+ H  +     GLN      Y++++ N R   
Sbjct: 236 KEQPELFTAGSVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 295

Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G   L+           W+S+  D    + +FFE R T Y +   L  D
Sbjct: 296 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 345


>gi|290343623|ref|YP_003494990.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1]
 gi|260161038|emb|CAY39739.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1]
          Length = 389

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/339 (26%), Positives = 152/339 (44%), Gaps = 31/339 (9%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           V  + + +L +  +   + PLKY   WE Y  A  ++W   EV +  DL  WK+   L +
Sbjct: 69  VEEEYEPILASTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 125

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+  IK  L FFA S+ +V  NI       +   E R +   Q   E VH  T+  +I 
Sbjct: 126 NEQKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLID 185

Query: 137 SLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
               D     ELF   + VP I  KA WA+++              D       +    +
Sbjct: 186 KYIKDPSEKKELFEAIQTVPCIEKKAQWAMKW-------------FDTKSRSFAERLFAF 232

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  I  L +   M G+    + I RDE LH  F +++   ++       
Sbjct: 233 ACVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLRN------ 286

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            +        ++ EA  +E  +  + +P   +G+N+    +Y++++++R   QIG+  ++
Sbjct: 287 -RPGVDTIHAIVREAVDIEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQIGVPTIW 345

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ++NPF +M E I L  + NFFE RV +Y    +L  D
Sbjct: 346 N-SKNPFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 379


>gi|15604372|ref|NP_220888.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           prowazekii str. Madrid E]
 gi|51473694|ref|YP_067451.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia typhi
           str. Wilmington]
 gi|3861064|emb|CAA14964.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (nrdB) [Rickettsia
           prowazekii]
 gi|51460006|gb|AAU03969.1| Ribonucleotide reductase [Rickettsia typhi str. Wilmington]
 gi|292572126|gb|ADE30041.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia
           prowazekii Rp22]
          Length = 324

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 149/321 (46%), Gaps = 17/321 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA+E + +    HW+P EVP+  D+  WK    LT  E+ ++ +   FF  ++
Sbjct: 10  YKPFSYPWAYEAWHTQQKIHWLPEEVPLAYDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +  
Sbjct: 68  IEVNNCYMKHYSRVFKPTEVLMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+              D  ++    L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYMQQF------------GVDNKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  +++           E 
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           A+       G   GL A    QY+++IA+RR  Q+GL+ ++    NP PW+ E+++  + 
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE R TEY +      W+
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315


>gi|308485547|ref|XP_003104972.1| hypothetical protein CRE_24501 [Caenorhabditis remanei]
 gi|308257293|gb|EFP01246.1| hypothetical protein CRE_24501 [Caenorhabditis remanei]
          Length = 323

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 156/333 (46%), Gaps = 28/333 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        + P+++   W  Y  A  + W   EV +  D+A W+    L+ DE+  
Sbjct: 4   EPLLVESGIRFVIYPIEHHDIWSFYKKALASFWTTEEVDVGKDMADWE---RLSADEKKF 60

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+       +   E R +   Q   E +HS T+  +I +   D
Sbjct: 61  ISTVLAFFAASDGIVVENLCSRFANEVKIVEARFFYGFQIAVENIHSETYAKLIETYIKD 120

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF+  +    I  KA+WAL++   ++SP            F   L  F  V EG
Sbjct: 121 ERERLVLFDAIKNFEFIKKKADWALRWISDMTSP------------FAHRLVAFAAV-EG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   + G+    + I RDE LH +F   +  +I         K  +
Sbjct: 168 IFFSGSFASIFWLKKRGLLPGLTHSNELISRDEGLHRDFACLLFTKIV-------DKPSR 220

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +    ++ EA  +E+ +  + +P   +G+N     QY++++A+    ++G E L+ +T N
Sbjct: 221 EIVCEIVDEAVTIELEFLDQALPVNVIGMNYTLMSQYIKYVADHLLEELGFEKLY-HTIN 279

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           PF +M E I +  + NFFE RV+EYQ+   +  
Sbjct: 280 PFDFM-ENISIDGKTNFFEKRVSEYQRSGVMAD 311


>gi|167760514|ref|ZP_02432641.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704]
 gi|167661880|gb|EDS06010.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704]
          Length = 347

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 162/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+        V+ +RM+   + ++N    +KY W  + Y  A NN W+P E+ M  D+ 
Sbjct: 7   KPLFNPSGDTQVNKRRMIGGNTTNLNDFNNMKYDWVSDWYRQAMNNFWIPEEINMGVDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L   ER    + L F    +S+   N+   I  +++  E    L  Q F+EAV
Sbjct: 67  DYR---KLPQAERRAYDKILSFLIFLDSIQTANLP-NIGEYITANEVNLCLSIQTFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L          +    K  D   L
Sbjct: 123 HSQSYSYMLDTICEP------QERNDVLYQWKEDQHLLKRNEFIGNLYNEFQKKKDAGVL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    +LGR N+M G  ++ +YI RDE+ HL    +++ ++K
Sbjct: 177 VKTLVANYILEGIYFYSGFMFFYNLGRNNRMPGSVQEIRYINRDENTHLWLFRNILLELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T+   ++ R M+ E    EI++ H  +     GLN      Y+Q++ N RC  
Sbjct: 237 KEEPQLFTESRIEEYREMIKEGCQQEISWGHYVIGDDIQGLNRDMVTDYIQYLGNLRCTN 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G  P+++ + + P    W+S+  +    + +FFE R T Y + + L  D
Sbjct: 297 LGFAPIYEGHVKEPDSMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346


>gi|291303011|ref|YP_003514289.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572231|gb|ADD45196.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis
           DSM 44728]
          Length = 338

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 177/333 (53%), Gaps = 10/333 (3%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           R+L+   D+  L P++Y   +E++ +A  N W   EV +  DL    +    TD ER +I
Sbjct: 8   RLLDPGMDL-TLRPMRYPDFYEQFRAAIRNTWTVEEVDLASDLPDLATF---TDSERHLI 63

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
            R + FFA+ +++VANN+VL +Y+H++ PE R YL RQ +EEAVH   +  ++ +   D 
Sbjct: 64  NRLVAFFATGDTIVANNLVLNLYKHVNAPEARLYLSRQLYEEAVHVQFYLTLLDTYLPDP 123

Query: 143 G---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
               + F     +PSI  KA +  ++  T+        T +  + FL +L  F    EG+
Sbjct: 124 EDRVKAFAAVEHIPSIKEKAEFCFKWIDTIDQLD-ELRTPEDRRAFLLNLICFAACIEGL 182

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           +FY  FA +  L     + G+A    ++ RDES H+NF   V++ ++ E P L+  E  +
Sbjct: 183 FFYGAFAYVYWLRSRGLLDGLATGTNWVFRDESCHMNFAFSVVDVVRNEEPELFDDELTE 242

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
               M+ EA   E+ +A +   +G  G+     + Y++++A++R  ++G+   +  ++NP
Sbjct: 243 AVTRMIEEAVAAELQFARDLCGEGMPGMTVNDMKSYLEYVADQRLTRLGMPVRYG-SKNP 301

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           F +M+ + D+++  NFFE R T YQ       D
Sbjct: 302 FGFMA-LQDVQELTNFFERRPTAYQVAVGGTVD 333


>gi|58584525|ref|YP_198098.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58418841|gb|AAW70856.1| Ribonucleotide reductase, beta subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 331

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 154/321 (47%), Gaps = 14/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA++ +L     HW+P EVP+ DD+  WK    L + E+ ++ +   FF  ++
Sbjct: 10  YKPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWK--IKLLNVEKNLLTQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +  
Sbjct: 68  IEVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYD 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++  K  + L++ ++          K   +   + L VF    EG+  +  FA +L+  R
Sbjct: 127 AMRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   +  RDE+LH N  I++ N    EN  +W  EF++   +       LE 
Sbjct: 178 FGKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNDEFKEGLYSACRTIVGLED 237

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G   GL+A     Y+++IANRR  Q+GL+P++   +NP PW+ E+++  + 
Sbjct: 238 EFIKLAFDLGDVEGLSAEEVRNYIRYIANRRLMQLGLKPIYDINDNPLPWLDEILNGVEH 297

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE RVTEY +   +  W+
Sbjct: 298 TNFFENRVTEYSRAATQGTWE 318


>gi|302867100|ref|YP_003835737.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029]
 gi|315506490|ref|YP_004085377.1| ribonucleotide reductase [Micromonospora sp. L5]
 gi|302569959|gb|ADL46161.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029]
 gi|315413109|gb|ADU11226.1| ribonucleotide reductase [Micromonospora sp. L5]
          Length = 342

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 107/334 (32%), Positives = 187/334 (55%), Gaps = 12/334 (3%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L+   D+  L P++Y   ++++  A  N W   EV +  DLA       L+  ER ++ 
Sbjct: 13  LLDPGMDL-TLRPMRYPRFFDRFKDAIKNTWTVEEVDLHSDLAD---LAKLSPAERHLVS 68

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   DE 
Sbjct: 69  RLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEK 128

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E    F+    +PSI  KA +  ++  ++        T+   + FL +L  F    EG++
Sbjct: 129 ERFAAFDAVENIPSIARKAEFCFRWIDSIFEL-RELRTRADRRAFLLNLICFAACIEGLF 187

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  FA +  L     + G+A    ++ RDES+H+ F  DV+  ++ E P L+  E +++
Sbjct: 188 FYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFAFDVVETVRAEEPDLFDDEMERQ 247

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + ML EA   E+++A + + +G  G++     +Y+Q +A+RR   +G+ P++  + NPF
Sbjct: 248 VKEMLAEAVECEVSFAEDLLGQGVPGMSLADMREYLQHVADRRLAVLGIAPMYG-SGNPF 306

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
            +M E+ D+++  NFFE RV+ YQ G    + +D
Sbjct: 307 AFM-ELQDVQELSNFFERRVSAYQVGVTGSVTFD 339


>gi|160942848|ref|ZP_02090088.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445900|gb|EDP22903.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii
           M21/2]
          Length = 347

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 155/350 (44%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   E   +V  +RM    + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPEGDPDVRLRRMTGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +S+   N+   I  +++  E    L  QAF+E V
Sbjct: 67  DY---PRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++         + R       K +  L    T     +    +  D   L
Sbjct: 123 HSQSYSYMLDTICSP------VERNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  Q  R M+ E    EIA+ H  +     GLN      Y++++ N R   
Sbjct: 237 KEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 296

Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G   L+           W+S+  D    + +FFE R T Y +   L  D
Sbjct: 297 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 346


>gi|153814165|ref|ZP_01966833.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756]
 gi|317499963|ref|ZP_07958199.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087814|ref|ZP_08336739.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145848561|gb|EDK25479.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756]
 gi|316898680|gb|EFV20715.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409509|gb|EGG88950.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 353

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/350 (25%), Positives = 156/350 (44%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   +   +V  +RM+   + ++N    LKY WA E Y  A NN W+P E+ +  D+ 
Sbjct: 13  KPLFNPDGDTDVLKRRMIGGNTTNLNDYNNLKYTWASEWYRQAMNNFWIPEEINLSQDIK 72

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L+  ER    + L F    +S+   N+   +  +++  E    L  Q F+E V
Sbjct: 73  DY---PNLSPAERKAYDKILSFLVFLDSIQTANLP-CVGEYITANEVNLCLNIQTFQECV 128

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   +       R       K +  L    T     +       D   L
Sbjct: 129 HSQSYSYMLDTICSPDE------RMDILYQWKTDEHLLKRNTFIGECYNEFQVKKDARTL 182

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   V EG++F++GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 183 VKVMMANFVLEGIYFFSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIIIELR 242

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E+P L+      + + +L EA   EI +A   +     GLN      Y++++ N R   
Sbjct: 243 KEHPELFDDHMVSEMKELLMEAVRQEIEWACYVIGNEVPGLNEKMITDYIRYLGNLRWKS 302

Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G  P++           W+S+  +    + +FFE R T Y +   L  D
Sbjct: 303 LGYAPIYPGCEREPETMKWVSQYSNANMVKTDFFEARSTAYAKSTALIDD 352


>gi|162452149|ref|YP_001614516.1| ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce
           56']
 gi|161162731|emb|CAN94036.1| Ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce
           56']
          Length = 339

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 99/321 (30%), Positives = 169/321 (52%), Gaps = 9/321 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P+ Y   +E Y SA  N W   EV    D+   +    +TD ER +++R + FFA+ 
Sbjct: 18  TLRPMAYPAFFEMYRSAIKNTWTVEEVDFSTDVGDLR---KMTDAERHLVQRLVAFFATG 74

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMY 149
           +S+VANN+VL +YRH++ PE R YL RQ +EEA+H   +  ++ +   D       F   
Sbjct: 75  DSIVANNLVLNLYRHINAPEARMYLSRQLYEEALHVQFYLTLLDTYIPDPEDRHRAFAAV 134

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA++ +++  ++ S      T+   + FL +L  F    EG++F+  FA + 
Sbjct: 135 ENIPSIRQKADFCMRWLDSVESLG-RLDTRAERRRFLLNLICFAACVEGLFFFGAFAYVY 193

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L     + G+A    ++ RDES H+ F  +V++  + E P L+     +    M+ EA 
Sbjct: 194 FLRSRGLLHGLAAGTSWVFRDESAHMRFAFEVVSTARREEPELFDAGLARSILDMMDEAI 253

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E  +A + +  G  G++A    +Y++F A++R   +G+   +   +NPF +M  + D+
Sbjct: 254 ACEARFAEDLLGAGVAGMSARDVRRYLEFCADQRLATLGMPKRYG-AKNPFSFMD-LQDV 311

Query: 330 KKEKNFFETRVTEYQQGAELK 350
           ++  NFFE RV+ YQ G   +
Sbjct: 312 QEVTNFFERRVSAYQVGVSGE 332


>gi|99036000|ref|ZP_01315041.1| hypothetical protein Wendoof_01000112 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 329

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 154/321 (47%), Gaps = 14/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA++ +L     HW+P EVP+ DD+  WK+   L+  E+ ++ +   FF  ++
Sbjct: 10  YKPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSSVEKNLLTQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +  
Sbjct: 68  IEVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYD 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++  K  + L++ ++          K   +   + L VF    EG+  +  FA +L+  R
Sbjct: 127 AMRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   +  RDE+LH N  I + N    EN  +W  EF+++  +       LE 
Sbjct: 178 FGKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELED 237

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G   GL+A     Y++++ANRR  Q+GLE ++   +NP PW+ E+++  + 
Sbjct: 238 EFIKLAFDLGDVEGLSAEEVRNYIRYVANRRLMQLGLESIYDVNDNPTPWLDEILNGVEH 297

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE RVTEY +   +  W+
Sbjct: 298 TNFFENRVTEYSRAATQGTWE 318


>gi|224438210|ref|ZP_03659145.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           cinaedi CCUG 18818]
 gi|313144656|ref|ZP_07806849.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           cinaedi CCUG 18818]
 gi|313129687|gb|EFR47304.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           cinaedi CCUG 18818]
          Length = 348

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 181/351 (51%), Gaps = 14/351 (3%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           N     I   E + +V D+++       +  L  +KY WA+  + +   N W P EV + 
Sbjct: 8   NIERKKIYNPESKESVKDRKIFGGNPTSMFDLNKIKYQWAYNLWKTMLANTWFPEEVNLN 67

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +   +GLT  E+    R L      +SL  NN++  +  ++++PE    L+RQAF
Sbjct: 68  GDKRDYA--DGLTAQEKAGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAF 125

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           EEA+HS ++  ++ S+  +  E++ M+R    + +K +        +++     G +  +
Sbjct: 126 EEALHSQSYAVMVESISANTDEIYEMWRVDMQLRSKND-------HIANVYIELGKQPTE 178

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           Q  L+ LF    + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL     +I
Sbjct: 179 QNLLKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLLVFQQMI 237

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
           N ++ E PHL+T   +++   M  +A  +E  +         +GL A    +Y+Q++A+ 
Sbjct: 238 NALRKEQPHLFTPSLEEEVIAMFQKAVEIESVWGEYITQGQILGLTAEIIREYIQYLADM 297

Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           R   +GL  ++ +++NP  W+ +      ++ NFFE +VT Y +G+ + +D
Sbjct: 298 RLRAVGLREIY-HSKNPIKWVEQFASFNDQKTNFFEAKVTNYSKGS-INFD 346


>gi|257456224|ref|ZP_05621421.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           vincentii ATCC 35580]
 gi|257446310|gb|EEV21356.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           vincentii ATCC 35580]
          Length = 351

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 96/356 (26%), Positives = 167/356 (46%), Gaps = 15/356 (4%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
                   +      + V  ++M+   + ++N    +KY WA E Y  A NN W+P E+ 
Sbjct: 5   KTVLARKKLFNETGDIEVHLRKMIGGNTTNLNDFNNMKYAWASEWYRQAMNNFWIPEEIN 64

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D+  ++    L+  E+    + L F    +S+   N+   + ++++  E    L  Q
Sbjct: 65  MNADVQDYR---KLSPAEKTAYDKILSFLIFLDSIQTANLP-NVGQYITANEVNLCLTIQ 120

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AF+EAVHS ++ Y++ ++   +       R       K +  L          +     D
Sbjct: 121 AFQEAVHSQSYSYMLDTICSPDE------RTAILYQWKDDEHLLKRNKFIGDLYNEFQDD 174

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
                L  + V   + EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     
Sbjct: 175 KSALALLKVAVANYILEGVYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRS 234

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I++++ E P L+T E  +  R+M+ E    EIA+ H  +     GL       Y+Q++ 
Sbjct: 235 IIHELQKEEPQLFTPENNELFRSMIREGCEQEIAWGHYVIGDDIPGLTRGMVTDYIQYLG 294

Query: 301 NRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           N RC  +G EPL++ + E P    W+S+  +    + +FFE + T Y + + LK D
Sbjct: 295 NLRCENLGFEPLYEGHREEPASMSWVSQYSNANLIKTDFFEAKSTAYAKSSALKDD 350


>gi|167748341|ref|ZP_02420468.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662]
 gi|167652333|gb|EDR96462.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662]
          Length = 358

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 89/350 (25%), Positives = 161/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +V  +RM+N  + ++N    +KY W    Y  A NN W+P E+ +  D+ 
Sbjct: 18  KPLFNPYGDTDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIK 77

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    L++ ER    + L F    +S+   N+   I  +++  E    L  QAF+EAV
Sbjct: 78  DYKQ---LSEPERRAYDKILSFLIFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAV 133

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L          +     + + E  
Sbjct: 134 HSQSYSYMLDTICEP------QERNDILYQWKNDPHLLERNQFIGDLYNDFQTNKNTETF 187

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    +LGR ++M G  ++ +YI RDE+ HL    +++ ++K
Sbjct: 188 VKTLVANYILEGIYFYSGFMFFYNLGRNHRMPGSVQEIRYINRDENTHLWLFKNILLELK 247

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+  +     R M+ +    EI + H  +     GL     E+Y++++ N RC  
Sbjct: 248 KEEPSLFHPDCINDYRRMIKKGCEQEIRWGHYVIGDEIQGLKKEMVEEYIRYLGNLRCQN 307

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G EP++  +E       W+S+  +    + +FFE + T Y + + L  D
Sbjct: 308 LGFEPIYPGSETEPESMSWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 357


>gi|85375147|ref|YP_459209.1| ribonucleotide-diphosphate reductase subunit beta [Erythrobacter
           litoralis HTCC2594]
 gi|84788230|gb|ABC64412.1| ribonucleotide reductase beta subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 356

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 151/323 (46%), Gaps = 18/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y WA++ +      HWMP EVP+ +D   W     +T+ ER ++ +   FF 
Sbjct: 7   RKTYKPFEYPWAYDFWKRQQQIHWMPEEVPLGEDCRDWAQ--KITEHERNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + 
Sbjct: 65  QADVEVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  K ++   +              D D++  + L VF    EGM  +  FA +++
Sbjct: 124 EYEEMKDKHDYLQLF------------GVDTDEDIARTLAVFGGFTEGMQLFASFAMLMN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   + +RDESLH    + + ++   E    +TK  ++    +  ++  
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDESLHCEGIVRLFHEFVRERD-CYTKAVKEDIIDICQKSVR 230

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE  +       G   G+     ++Y+++IA+ R  Q+GL+P++   ++P PW++ +++ 
Sbjct: 231 LEDNFIDLAFEMGPVSGMTPKEIKKYIRYIADWRLGQLGLQPIYMVDDHPLPWLAPLLNG 290

Query: 330 KKEKNFFETRVTEYQQ-GAELKW 351
            +  NFFE R TEY +   +  W
Sbjct: 291 VEHANFFEQRATEYSKGATKGNW 313


>gi|262277047|ref|ZP_06054840.1| ribonucleoside-diphosphate reductase, beta subunit [alpha
           proteobacterium HIMB114]
 gi|262224150|gb|EEY74609.1| ribonucleoside-diphosphate reductase, beta subunit [alpha
           proteobacterium HIMB114]
          Length = 342

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 80/334 (23%), Positives = 155/334 (46%), Gaps = 20/334 (5%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D++ +L  ++      P +Y W ++ +L+    HW+P E+P+ +D+  W+    LT  E+
Sbjct: 19  DNEGLLKEKA---VYKPFRYPWCYDAWLTQQRIHWLPEEIPLAEDVRDWQK--NLTAHEK 73

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            ++ +   FF  ++  V N  +          E    +   A  E +H   + +++ ++G
Sbjct: 74  NLLTQIFRFFTQADVEVNNCYLRHYTTVFKPTEVLMMMTAFASMETIHVAAYSHLLDTIG 133

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
           + E E ++ + +   +  K ++   +              +  +E  + + VF    EG+
Sbjct: 134 MPESE-YSAFLKYKEMKDKYDYMQNF------------NVNNKREIAKTVAVFSAFTEGL 180

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
             +  FA +L+  R NKM G+ +   + +RDE+LH N  I + N    ENP L  +  ++
Sbjct: 181 QLFASFAILLNFPRFNKMKGMGQVVTWSVRDETLHCNSMIKIFNTFCAENPGLLDESLKK 240

Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +           E A+       G   GL A   + Y+++IANRR  Q+ L+ ++   EN
Sbjct: 241 EITDACRTIVEHEDAFIDLAFEMGPIEGLTAQQIKDYIRWIANRRLVQLKLDEIYDVKEN 300

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKW 351
           P  W+  +++  +  NFFE R TEY + + +  W
Sbjct: 301 PLEWIDTMLNGVEHMNFFEGRATEYSKASTKGSW 334


>gi|290995765|ref|XP_002680453.1| predicted protein [Naegleria gruberi]
 gi|284094074|gb|EFC47709.1| predicted protein [Naegleria gruberi]
          Length = 338

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 91/326 (27%), Positives = 155/326 (47%), Gaps = 28/326 (8%)

Query: 28  RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
                 L PL Y   WE Y     + W   EV +  D+  W+    L  +E+  IK  L 
Sbjct: 25  NPHRFVLFPLHYPKMWEMYKKTMASFWTVEEVDLHTDITEWE---KLNSNEQHFIKTVLA 81

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--- 144
           FFA+S+ +V  N+       +  PE R +   Q   E +H+  +  +I +L  D+ E   
Sbjct: 82  FFAASDGIVNENLCQQFMAQVQVPEARCFYGFQIAIENIHAEMYSTLIETLIKDQRERNR 141

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           LF+    VPS+  KANWAL++  +              +    +  + +   EG++F   
Sbjct: 142 LFHAIDTVPSVQKKANWALKWINS--------------ENLFAERLLAFACVEGIFFSGS 187

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F  I  L +   M G++   + I RDE LH +F   + + +K      +TK  QQ   ++
Sbjct: 188 FCSIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLYSTLK------YTKLPQQVVHSL 241

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           ++EA  +E  +  E++P   +G+N+   +QY++ +A+R    IG E ++  + NPF WM+
Sbjct: 242 VYEAVEIEKEFISESLPVDLIGMNSRLMQQYIEMVADRLLVSIGYEKIYN-SSNPFDWMN 300

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
            +I +  + NFFE +V EY +   + 
Sbjct: 301 -IISVSGKTNFFEKKVGEYAKANIMS 325


>gi|254456975|ref|ZP_05070403.1| ribonucleoside-diphosphate reductase, beta subunit
           [Campylobacterales bacterium GD 1]
 gi|207085767|gb|EDZ63051.1| ribonucleoside-diphosphate reductase, beta subunit
           [Campylobacterales bacterium GD 1]
          Length = 340

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 98/348 (28%), Positives = 177/348 (50%), Gaps = 15/348 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I   + + NV+D+++       + +L  +KY WA+  +    NN W P EV M  D+
Sbjct: 3   RKNIYNPDSKENVNDRKVFGGDPTGIFELNNIKYQWAYNLWEVMLNNTWFPKEVDMTRDV 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +K    LT++E+    + L      +SL  NN++  +  ++++PE    L+RQ+FEEA
Sbjct: 63  NDYK---NLTENEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTSPEINLILVRQSFEEA 119

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +HS ++  ++ S+  +  E+++++R    +  K +   +  Q L+         +  +  
Sbjct: 120 LHSQSYAVMVDSISTNSAEIYDLWRRDMMLKGKNDAIARVYQELA--------ANPTEHN 171

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                    + EG++FY+GF  I +L R+ KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 172 FVKACFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINTL 231

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+T + +++   M  EA  LE  +         +GL     EQY++F+A+ R  
Sbjct: 232 RKERPDLFTDKLKEEVIAMFKEAVQLESEWGKYITQGQILGLTNDIVEQYIKFLADERLT 291

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
            +G E L+  T NP  W+ +      ++ NFFE  VT Y +G+ L +D
Sbjct: 292 AVGFEKLYNVT-NPIKWVDDFAKFNDQKTNFFEGTVTNYSKGS-LTFD 337


>gi|332185556|ref|ZP_08387304.1| ribonucleotide reductase, small chain family protein [Sphingomonas
           sp. S17]
 gi|332014534|gb|EGI56591.1| ribonucleotide reductase, small chain family protein [Sphingomonas
           sp. S17]
          Length = 351

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 148/317 (46%), Gaps = 17/317 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           Q  P +Y WA+E +      HW+P EVP+ +D   W     LTD ER ++ +   FF  +
Sbjct: 9   QYKPFEYPWAFEFWKRQQQLHWLPEEVPLGEDCRDWAQ--KLTDHERNLLTQIFRFFTQA 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V +       R     E +  L   +  E VH   + +++ ++G+ E E +  + E 
Sbjct: 67  DVEVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGAFLEY 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++  ++              D D++  + L +F    EG+  +  FA +++  
Sbjct: 126 AEMKDKHDYLQKF------------GVDNDEDIARTLAMFGGFTEGVQLFASFAMLMNFP 173

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDESLH    I + +    E     TK  +            LE
Sbjct: 174 RFNKMKGMGQIVTWSVRDESLHCEGIIQLFHAFTKER-QCLTKAVKDDIADQCQTTVRLE 232

Query: 273 IAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +       G V G+ A   ++Y+++IA+ R  Q+GL+P++   E+P PW++ +++  +
Sbjct: 233 DNFIDLAFEMGPVNGMTAKDIKKYIRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292

Query: 332 EKNFFETRVTEYQQGAE 348
             NFFETR TEY + A 
Sbjct: 293 HANFFETRATEYSKAAT 309


>gi|145596896|ref|YP_001161193.1| ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440]
 gi|145306233|gb|ABP56815.1| Ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440]
          Length = 350

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 104/334 (31%), Positives = 185/334 (55%), Gaps = 12/334 (3%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L+   D+  L P++Y   ++++  A  N W   EV +  DL        L+  ER ++ 
Sbjct: 21  LLDPGMDL-TLRPMRYPHFFDRFKEAIKNTWTVEEVDLHSDLGD---LAKLSSAERHLVS 76

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   +E 
Sbjct: 77  RLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPEEK 136

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E    F     +PSI  KA +  ++  ++        T+   + FL +L  F    EG++
Sbjct: 137 ERFAAFAAVENIPSIARKAEFCFRWIDSIFEL-RELRTQADRRAFLLNLICFAACIEGLF 195

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  FA +  L     + G+A    ++ RDES+H+ F  DV++ ++ E P L+  + +++
Sbjct: 196 FYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDADLERQ 255

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + M+ EA   E+ +A + + +G  GL+     +Y+Q +A+RR   +G+ P++  + NPF
Sbjct: 256 VKEMVAEAVDCEVQFAEDLLEQGVSGLSLADMREYLQHVADRRLVTLGIAPMYG-SANPF 314

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
            +M E+ D+++  NFFE RV+ YQ G    + +D
Sbjct: 315 AFM-ELQDVQELSNFFERRVSAYQMGVSGSVTFD 347


>gi|94495782|ref|ZP_01302361.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58]
 gi|94424474|gb|EAT09496.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58]
          Length = 350

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/317 (24%), Positives = 148/317 (46%), Gaps = 17/317 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA+E +      HW+P EVP+ +D   W     L+D ER ++ +   FF  +
Sbjct: 9   VYKPFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + + 
Sbjct: 67  DVEVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQY 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++  Q+              D D++  + L +F    EG+  +  FA +++  
Sbjct: 126 KEMKDKHDYLQQF------------GVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFP 173

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDE+LH    + + +    E     T   +     M  +   +E
Sbjct: 174 RFNKMKGMGQIVSWSVRDETLHCEGIVRLFHAFVKERD-CLTASVKDDIMDMCQKTVRIE 232

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G   G+     ++Y+++IA+ R  Q+GL+P++   E+P PW++ +++  +
Sbjct: 233 DAFVDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292

Query: 332 EKNFFETRVTEYQQGAE 348
             NFFETR TEY + A 
Sbjct: 293 HANFFETRSTEYSKAAT 309


>gi|155370982|ref|YP_001426516.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124302|gb|ABT16169.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 325

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 94/321 (29%), Positives = 153/321 (47%), Gaps = 28/321 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P++Y   ++ Y  A    W   EV +  D+  W+    L DDER  IK  LGFFA S+ 
Sbjct: 20  FPIRYPDIFQMYKKAVATFWTVEEVQLNQDVVDWRE--KLNDDERHFIKHILGFFAGSDG 77

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151
           +V  N+       +++P  R +   Q + E+VHS  +  ++ +L  DE E   LF     
Sbjct: 78  MVMENLNNNFAEEVTDPSARMFYAYQGYNESVHSEQYSLLLDALIEDETERNKLFEAIET 137

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P++  KA WA +Y                D+ F + L  + V  EG+ F   F  I  L
Sbjct: 138 IPAVGKKAAWASKYFSR-------------DRSFAERLVAW-VCVEGLLFSGSFCAIFWL 183

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                M G+    ++I RDE LH  FG  + ++++ +             ++++ EA   
Sbjct: 184 RNRGLMPGLGLSNEFISRDEGLHQQFGELLYSKLENKLSL-------DVVKSIVEEAVAN 236

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           E  +  + +P   +G+N+    QY++F+A+R    +G    F   ENPF +M E+I L+ 
Sbjct: 237 EKDFICDAIPCRMIGMNSDLMSQYIEFVADRIFTALGYPKQFG-AENPFDFM-ELISLEG 294

Query: 332 EKNFFETRVTEYQQGAELKWD 352
           + NFFE RV+EYQ+   +  D
Sbjct: 295 KSNFFERRVSEYQKAGVMNAD 315


>gi|219126374|ref|XP_002183434.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405190|gb|EEC45134.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 296

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 84/311 (27%), Positives = 142/311 (45%), Gaps = 28/311 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   E+ +  DL  W   + L+ +ER  +   L FFA+S+ +V  N+    
Sbjct: 1   MYKKAEASFWTAEEIDLAGDLQDW---DKLSSNERHFVSHVLAFFAASDGIVNENLAGNF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
              + + E R +   Q   E +HS T+  +I +   D  E   L +    VP +  KA+W
Sbjct: 58  ATEIQSAEARCFYGFQIAVENIHSETYSLLIDTYVRDAAEKDHLLHAIETVPCVQKKASW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           ALQ+              DA+     +  V +   EG++F   F  I  L +   M G+ 
Sbjct: 118 ALQW-------------CDANHASFAERCVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLC 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   + ++++ + P     E       ++ +A  +E  +  + +P
Sbjct: 165 FSNELISRDEGLHCDFACLLYSKLQNQLPVARIVE-------IITDAVTIEQEFVQDALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
              +G+N+    +Y++F A+R    +G    +K   NPF WM E+I L+ + NFFE RV 
Sbjct: 218 VELIGMNSTLMCRYIEFCADRLLVALGCPKHYKAV-NPFDWM-EMISLQGKTNFFEKRVG 275

Query: 342 EYQQGAELKWD 352
           EY +    + D
Sbjct: 276 EYAKSGVGEKD 286


>gi|225677302|ref|ZP_03788281.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590665|gb|EEH11913.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 329

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 153/321 (47%), Gaps = 14/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA++ +L     HW+P EVP+ DD+  WK+   L+  E+ ++ +   FF  ++
Sbjct: 10  YKPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSSVEKNLLTQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +  
Sbjct: 68  IEVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYD 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++  K  + L++ ++          K   +   + L VF    EG+  +  FA +L+  R
Sbjct: 127 AMRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   +  RDE+LH N  I + N    EN  +W  EF+++  +       LE 
Sbjct: 178 FGKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDDEFKEELYSACRTIVELED 237

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G   GL+A     Y+ ++ANRR  Q+GLE ++   +NP PW+ E+++  + 
Sbjct: 238 EFIKLAFDFGDVEGLSAEEVRNYIHYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEH 297

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE RVTEY +   +  W+
Sbjct: 298 TNFFENRVTEYSRAATQGTWE 318


>gi|307295356|ref|ZP_07575195.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum
           L-1]
 gi|306878859|gb|EFN10078.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum
           L-1]
          Length = 351

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 79/317 (24%), Positives = 148/317 (46%), Gaps = 17/317 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA+E +      HW+P EVP+ +D   W     L+D ER ++ +   FF  +
Sbjct: 9   VYKPFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + + 
Sbjct: 67  DVEVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFMQY 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++  Q+              D D++  + L +F    EG+  +  FA +++  
Sbjct: 126 KEMKDKHDYLAQF------------GVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFP 173

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDE+LH    I + +    E     T   +     M  +   +E
Sbjct: 174 RFNKMKGMGQIVSWSVRDETLHCEGIIRLFHAFVKERD-CLTASVKDDIMDMCQKTVRIE 232

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G   G+     ++Y+++IA+ R  Q+GL+P++   E+P PW++ +++  +
Sbjct: 233 DAFIDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292

Query: 332 EKNFFETRVTEYQQGAE 348
             NFFETR TEY + A 
Sbjct: 293 HANFFETRATEYSKAAT 309


>gi|87198296|ref|YP_495553.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133977|gb|ABD24719.1| Ribonucleoside-diphosphate reductase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 351

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 82/323 (25%), Positives = 151/323 (46%), Gaps = 18/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
            N   P +Y WA+E +      HWMP EVP+ +D   W     +++ ER ++ +   FF 
Sbjct: 7   RNTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQ--KISEHERNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V N       R     E +  L   +  E VH   + +++ ++G+ E E + M+ 
Sbjct: 65  QADVEVQNCYHEQYGRVFKPTEVKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YGMFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   + AK ++              T   + D++  + L +F    EG+  +  FA +++
Sbjct: 124 EYEELKAKHDY------------LQTFGVETDEDIARTLAMFGGFTEGLQLFASFAMLMN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   + +RDESLH      + +    E     TK  ++       +   
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDESLHCEGITRLFHAFVKER-GCLTKAVKEDIIDCCQKTVR 230

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE A+      +G   G++A   ++Y+++IA+ R  Q+GL  ++   ++P PW++ +++ 
Sbjct: 231 LEDAFIDLAFEQGPVPGMSAKEIKRYIRYIADWRLSQLGLPAIYMIEDHPLPWLAPLLNG 290

Query: 330 KKEKNFFETRVTEYQQ-GAELKW 351
            +  NFFETR TEY +   +  W
Sbjct: 291 VEHANFFETRATEYSKAATKGDW 313


>gi|91205547|ref|YP_537902.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           bellii RML369-C]
 gi|91069091|gb|ABE04813.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia bellii
           RML369-C]
          Length = 324

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 148/321 (46%), Gaps = 17/321 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA+E + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++
Sbjct: 10  YKPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +  
Sbjct: 68  IEVNNCYMKHYSRVFKPTEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+                +++    L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYMQQF------------GVATNEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  + +           E 
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTENLRSRIYKACTTIVHFED 234

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           A+       G   GL A     Y+++IA+RR  Q+GL+ ++    NP PW+ E+++  + 
Sbjct: 235 AFIALAFEVGGIEGLTADEVRLYIRYIADRRLFQLGLKDIYMVKNNPLPWLDEMLNGVEH 294

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE R TEY +      W+
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315


>gi|294013210|ref|YP_003546670.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium
           japonicum UT26S]
 gi|292676540|dbj|BAI98058.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium
           japonicum UT26S]
          Length = 351

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 78/317 (24%), Positives = 148/317 (46%), Gaps = 17/317 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA+E +      HW+P EVP+ +D   W     L+D ER ++ +   FF  +
Sbjct: 9   VYKPFEYPWAYEFWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + + 
Sbjct: 67  DVEVQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQY 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++  Q+              D D++  + L +F    EG+  +  FA +++  
Sbjct: 126 KEMKDKHDYLQQF------------GVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFP 173

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDE+LH    + + +    E     T   +     M  +   +E
Sbjct: 174 RFNKMKGMGQIVSWSVRDETLHCEGIVRLFHAFVKERD-CLTASVKDDIMDMCQKTVRIE 232

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G   G+     ++Y+++IA+ R  Q+GL+P++   E+P PW++ +++  +
Sbjct: 233 DAFVDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292

Query: 332 EKNFFETRVTEYQQGAE 348
             NFFETR TEY + A 
Sbjct: 293 HANFFETRATEYSKAAT 309


>gi|87311395|ref|ZP_01093515.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula
           marina DSM 3645]
 gi|87285807|gb|EAQ77721.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula
           marina DSM 3645]
          Length = 313

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 167/298 (56%), Positives = 223/298 (74%), Gaps = 2/298 (0%)

Query: 15  KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           +RV  +DKR++N    DVNQL+PLKY WAWE Y++ C NHWMPTEVPM  D+  W+S + 
Sbjct: 16  QRVRANDKRLVNCSQVDVNQLMPLKYNWAWEHYMNGCANHWMPTEVPMTKDIETWRS-DK 74

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LTDDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLLRQAFEEAVHSHTF Y
Sbjct: 75  LTDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLLRQAFEEAVHSHTFLY 134

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           ++ SLGL+EGE+FNMY EVP+I  K  + ++ T  + SP F+T + +  Q FL++L  +Y
Sbjct: 135 VVESLGLNEGEIFNMYNEVPAIARKDQFEMKLTAEVLSPDFSTDSYEGLQAFLKNLIGYY 194

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           ++ EG++FYTGF  +LS  R N M GI EQ+QYI+RDE++HLNFGID+IN IK ENP LW
Sbjct: 195 IIMEGIFFYTGFVMVLSFHRRNLMTGIGEQFQYILRDETVHLNFGIDLINGIKAENPDLW 254

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           T EFQ +   ++ +A  LEI YA + +P G +GLN      Y+ ++A+RR  +IGL  
Sbjct: 255 TAEFQAEIIDLIKQAVELEIEYAGDCLPNGILGLNRDLFRDYVHYVADRRVERIGLPK 312


>gi|320536436|ref|ZP_08036471.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           phagedenis F0421]
 gi|320146705|gb|EFW38286.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           phagedenis F0421]
          Length = 363

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 96/352 (27%), Positives = 163/352 (46%), Gaps = 15/352 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               +      V +  +RM+   + ++N    LKY W  E Y  A NN W+P E+ M  D
Sbjct: 21  DRRALFNEHGDVELHKRRMIGGNTTNLNDFNNLKYPWVSEWYRQAMNNFWIPEEINMNTD 80

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  ++    L+  E+    + L F    +S+   N+   + ++++  E    L  QAF+E
Sbjct: 81  VQDYR---KLSKAEKTAYDKILSFLIFLDSIQTANLP-NVGQYITANEVNLCLTIQAFQE 136

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           AVHS ++ Y++ ++   E       R       K +  L          +     D    
Sbjct: 137 AVHSQSYSYMLDTICSPEE------RNDILYQWKDDEHLLARNKFIGNLYNEFVNDKSAL 190

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L  + V   + EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     +I +
Sbjct: 191 ALVKVAVANYILEGVYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIQE 250

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E P L+T E  +  R M+ E    EI + H  +     GLN      Y+Q++ N RC
Sbjct: 251 LQKEEPQLFTPENIEMFRAMIKEGCEQEIKWGHYVIGDDIPGLNKQMITDYIQYLGNLRC 310

Query: 305 HQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             +G EPL++ + E P    W+S+  +    + +FFE + T Y + + +  D
Sbjct: 311 ENLGFEPLYEGHREEPASMSWVSQYSNANLIKTDFFEAKSTAYAKSSAMVDD 362


>gi|225386408|ref|ZP_03756172.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme
           DSM 15981]
 gi|225047489|gb|EEG57735.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme
           DSM 15981]
          Length = 347

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 162/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   +    V+ +RM+   + ++N    +KY W    Y  A NN W+P E+ M  D+ 
Sbjct: 7   KPLFNPQGDTEVNLRRMIGGNTTNLNDFNNMKYAWVSGWYRQAMNNFWIPEEINMSSDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L + ER    + L F    +S+   N+   I ++++  E    L  Q F+EAV
Sbjct: 67  DY---PELPEAERTAYDKILSFLIFLDSIQTANLP-NIGQYITANEVNLCLTIQGFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++         + R       K +  L    T     +       D + L
Sbjct: 123 HSQSYSYMLDTICSP------VERNTILYQWKDDEHLLRRNTFIGELYNEFQDKKDAQTL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    ++I ++K
Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLLRNMILELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L++ E  +  + M+ E    EIA+ H  +     GL      +Y++++ N R   
Sbjct: 237 KEEPQLFSPETVEMLKAMVEEGVEQEIAWGHYVIGDRISGLTREMVTEYIRYLGNLRWTS 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G EPL++ Y E P    W+ +  +    + +FFE + T Y +   L  D
Sbjct: 297 LGFEPLYEGYEEEPESMKWVGQYSNANMVKTDFFEAKSTAYAKSTALVDD 346


>gi|157827263|ref|YP_001496327.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           bellii OSU 85-389]
 gi|157802567|gb|ABV79290.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
           bellii OSU 85-389]
          Length = 324

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 148/321 (46%), Gaps = 17/321 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA+E + +    HW+P EVP+ DD+  WK    LT  E+ ++ +   FF  ++
Sbjct: 10  YKPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +    R     E    L   +  E VH   + +++ ++G+ E E ++ + +  
Sbjct: 68  IEVNNCYMKHYSRVFKPTEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  Q+                +++    L VF    EG+  +  FA +L+  R
Sbjct: 127 EMKDKYDYMQQF------------GVATNEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDE+LH N  I +      ENP +WT+  + +           E 
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTENLRSRIYKACTTIVHFED 234

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           A+       G   GL A     Y+++IA+RR  Q+GL+ ++    NP PW+ E+++  + 
Sbjct: 235 AFIALAFEVGGIEGLTADEVRLYIRYIADRRLFQLGLKDIYMVKNNPLPWLDEMLNGVEH 294

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE R TEY +      W+
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315


>gi|88607783|ref|YP_505152.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
           phagocytophilum HZ]
 gi|88598846|gb|ABD44316.1| ribonucleoside-diphosphate reductase, beta subunit [Anaplasma
           phagocytophilum HZ]
          Length = 323

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 154/322 (47%), Gaps = 14/322 (4%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF  +
Sbjct: 9   VYKPFDYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTM--LSEKEKNLLVQIFRFFTQA 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + + 
Sbjct: 67  DIEVNNCYMKHYSNIFRPTEICMMLSAFSNMETIHVAAYSYLLDTIGMPEVE-YQAFLKF 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++  ++ +           +   +   + L VF    EG+  +  FA +L+  
Sbjct: 126 EVMKKKYDYMQRFEEC---------RRGDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQ 176

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  KM G+ +   +  RDESLH +  I + N    EN  +W  + +Q+         +LE
Sbjct: 177 RFGKMKGMGQIIAWSARDESLHTDSIIRLFNTFVHENGEIWDDDLKQELYDACKVIVMLE 236

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +       G   GL+A   ++Y++FIANRR  Q+ LEP++   ENP PW+ E+++  +
Sbjct: 237 DEFIDLAFALGDVEGLSACEVKRYIRFIANRRLKQLHLEPIYDVAENPLPWLDEILNGVE 296

Query: 332 EKNFFETRVTEYQQ-GAELKWD 352
             NFFE RVTEY +   E  W+
Sbjct: 297 HTNFFENRVTEYARAATEGTWE 318


>gi|254293199|ref|YP_003059222.1| ribonucleotide-diphosphate reductase subunit beta [Hirschia baltica
           ATCC 49814]
 gi|254041730|gb|ACT58525.1| Ribonucleoside-diphosphate reductase [Hirschia baltica ATCC 49814]
          Length = 345

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 147/336 (43%), Gaps = 22/336 (6%)

Query: 22  KRMLNARSDVNQ----LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           K +L  +  +        P +Y WA++ +      HW+P EVP+ +D   W     L D 
Sbjct: 3   KIILPEKPGLMTPSLSYKPFRYPWAYDFWKIQQQVHWVPEEVPLGEDCKDWA--GKLNDK 60

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER ++ +   FF  S+  V  N +          E R  L   +  E VH   +  ++ +
Sbjct: 61  ERNLLTQIFRFFTQSDVEVGANYMENYMPLFKPVEVRMMLAAFSNMETVHIAAYALLLET 120

Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +G+ + E F+ + E   + AK ++  ++            + D + + L  + VF    E
Sbjct: 121 IGMPDSE-FSAFMEYEEMAAKHDYLGKF------------SVDTEADILTSMAVFGGFTE 167

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+  +  FA +++  R NKM G+ +   + +RDESLH    + + +    E   L     
Sbjct: 168 GLQLFASFAMLMNFPRFNKMKGMGQIVSWSVRDESLHCEGMMKMFHTYAEETGALTKT-V 226

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +            LE  +       G   G+     + Y+++IA+ R  Q+ L+P++   
Sbjct: 227 KDDITDCCQTVVKLEDKFIDLAFEAGEVEGMTPEDIKNYIRYIADWRLKQLKLDPVYGVD 286

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQ-GAELKW 351
           E+P PW++E+++  +  NFFE R TEY +      W
Sbjct: 287 EHPIPWLTEILNGVEHANFFEARATEYSKGATAGDW 322


>gi|313768358|ref|YP_004062038.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599054|gb|ADQ91078.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1]
          Length = 388

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 32/339 (9%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +  + + +L +  +   + PLKY   WE Y  A  ++W   EV +  D+  WK+   L D
Sbjct: 69  IEDEYEPILASTLNRFTVFPLKYPELWELYKKAQMSNWTAEEVDLSKDMDDWKT---LND 125

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+  IK  L FFA S+ +V  NI       +   E R +   Q+  E VH  T+  +I 
Sbjct: 126 NEQKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQSHNEMVHGETYSKLID 185

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
               D  E   LF   + VP I  KANWAL++              D  + F + LF  +
Sbjct: 186 KYIKDGAEKKQLFEAIQTVPCIERKANWALKW-------------FDKSRPFAERLFA-F 231

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  I  L +   M G+    + I RDE LH  F +++   ++       
Sbjct: 232 ACVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKLLRN------ 285

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            K   +   +++ EA  +E  +  + +P   +G+N+    +Y++++++R   Q+G  P++
Sbjct: 286 -KPSTETIHSIVKEAVEIEKNFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQVGQPPIW 344

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ++NPF +M E I L  + NFFE RV +Y    +L  D
Sbjct: 345 N-SKNPFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 378


>gi|242309209|ref|ZP_04808364.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pullorum MIT 98-5489]
 gi|239524250|gb|EEQ64116.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pullorum MIT 98-5489]
          Length = 341

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 178/349 (51%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       + +L  +KY WA+  +     N W P EV M  D
Sbjct: 3   NRKKIYNPNSNESVNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQD 62

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +   +GLT +E++   R L      +SL  NN++  +  ++++PE    L+RQAFEE
Sbjct: 63  KRDYA--DGLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HS ++  ++ S+  +  E++ M+R    + +K ++  +  + L+         +  + 
Sbjct: 121 ALHSQSYAVMVESISANTDEIYEMWRTDMQLRSKNDYIAEVYEQLA--------TNPTER 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF    +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NIIKAMFANQILEGIYFYSGFTFFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMINS 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
            K E+P  +TK+ +++   M  EA  +EIA+         +GL A   ++Y++++A+ R 
Sbjct: 233 TKKESPEFFTKDLEEEVLEMFREAVKVEIAWGEYITQGQILGLTAEIIQEYIKYLADDRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            ++GL  L+   ++P  W+       + + NFFE  VT Y +G+ + +D
Sbjct: 293 RRVGLPVLYN-AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS-INFD 339


>gi|302381236|ref|YP_003817059.1| ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302191864|gb|ADK99435.1| Ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 348

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/316 (26%), Positives = 141/316 (44%), Gaps = 17/316 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P +Y WA++ +      HWMP EVP+ +D   W     L D ER ++ +   FF  S+
Sbjct: 21  YKPFRYPWAFDMWKKQQQVHWMPEEVPLGEDCKDWA--ANLNDKERNLLTQIFRFFTQSD 78

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             VA+N +    R     E +  L   A  E +H   +  ++ ++G+ E E F  + E  
Sbjct: 79  IEVADNYMEKYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMEYE 137

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++  K ++              T   D + +  + L +F    EG+  +  FA +++  R
Sbjct: 138 AMRDKHDFMQ------------TFGVDTEADIARTLAMFGGFTEGLQLFASFAMLMNFPR 185

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDESLH +  I + +    E   + TK               LE 
Sbjct: 186 QNKMKGMGQIVSWSVRDESLHCDGIIKLYHAFNKET-GVVTKAVADDIVQCCETVVGLED 244

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G + G+     +QY++FIA+ R  Q+ L  L+   ENP PW+  ++   + 
Sbjct: 245 KFIDLAFEAGEINGMTPEDIKQYIRFIADWRLRQLKLPELYGVKENPLPWLQSLLSGVEH 304

Query: 333 KNFFETRVTEYQQGAE 348
            NFFE R TEY + A 
Sbjct: 305 ANFFEARATEYSKAAT 320


>gi|148284015|ref|YP_001248105.1| ribonucleotide-diphosphate reductase subunit beta [Orientia
           tsutsugamushi str. Boryong]
 gi|146739454|emb|CAM79093.1| ribonucleoside-diphosphate reductase beta chain [Orientia
           tsutsugamushi str. Boryong]
          Length = 329

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/331 (26%), Positives = 156/331 (47%), Gaps = 20/331 (6%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LNAR       P  Y WA++ + +    HW+P EVP+ DD+  WK    LT  E+ ++ 
Sbjct: 3   LLNARP---IYKPFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWK--YNLTPGEKHLLT 57

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           +   FF  ++  V N  +    R     E +  L   +  E +H   + +++ ++G+ E 
Sbjct: 58  QIFRFFTQADIEVNNCYMKHYARVFQPTEVQMMLSAFSNMETIHIAAYSHLLDTIGMPET 117

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E +  + +  ++  K ++  ++              D  +E    L VF    EG+  + 
Sbjct: 118 E-YQAFMKYKAMKDKYDYMQRF------------NVDNKEEIATTLAVFGAFTEGVQLFA 164

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            FA +L+  R NKM G+ +   + +RDE+LH N  I +      E P +WT++ + +   
Sbjct: 165 SFAILLNFPRYNKMKGMGQIITWSVRDETLHTNSIITLFKTFIQEYPEVWTEQLKSRIYE 224

Query: 264 MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
                   E A+       G   GL A   ++Y+++IA+RR  Q+GL+  +   +NP  W
Sbjct: 225 ACCTIIHFEDAFIDLAFEVGGVEGLEARDVKKYIRYIADRRLLQLGLKENYLIEQNPLTW 284

Query: 323 MSEVIDLKKEKNFFETRVTEYQQ-GAELKWD 352
           + ++++  +  NFFE RVTEY +      WD
Sbjct: 285 LDQILNGVEHTNFFENRVTEYTRSATTGSWD 315


>gi|271967540|ref|YP_003341736.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
 gi|270510715|gb|ACZ88993.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
          Length = 331

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 105/330 (31%), Positives = 176/330 (53%), Gaps = 10/330 (3%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L+   D+  L P++Y   +E+Y +A  N W   EV +  DLA       +T +ER +I 
Sbjct: 2   LLDPGMDL-TLRPMRYPEFYERYRAAIRNTWTVEEVDLNSDLAD---LARMTPEERHLIN 57

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R + FFA+ +S+VANN+VL +Y+H++ PE R YL RQ FEEAVH   +  ++ +   D  
Sbjct: 58  RLVAFFATGDSIVANNLVLNLYQHVNAPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDHD 117

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E    F     +PSI  KA +  ++  +L        +++  + FL +L  F    EG++
Sbjct: 118 ERVKAFAAVEHIPSIRNKAEFCFRWIDSLGGLD-RLESREDRRAFLLNLICFAACIEGLF 176

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  FA +        + G+A    ++ RDES+H+ F   V++ ++ E P L+  +   +
Sbjct: 177 FYGAFAYVYWFRSRGLLSGLATGTNWVFRDESMHMEFAFSVVDTVRAEEPDLFDDKLGAQ 236

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              M+ EA   E+A+A +    G  G+N     QY++++A++R  ++     +  T NPF
Sbjct: 237 VTQMIEEAVEAELAFAADLCGDGMSGMNVEQMRQYLEYVADQRLVRLRFPVRYG-TANPF 295

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            +M E+ D+++  NFFE RV+ YQ   E  
Sbjct: 296 AFM-ELQDVQELANFFERRVSAYQVAVEGN 324


>gi|257792030|ref|YP_003182636.1| ribonucleotide-diphosphate reductase subunit beta [Eggerthella
           lenta DSM 2243]
 gi|317488666|ref|ZP_07947206.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA]
 gi|257475927|gb|ACV56247.1| Ribonucleoside-diphosphate reductase [Eggerthella lenta DSM 2243]
 gi|316912225|gb|EFV33794.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA]
          Length = 347

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 96/350 (27%), Positives = 162/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +V D+RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPLGDTDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L   ER    + L F    +SL + N+  A+  +++  E    L  Q F+E V
Sbjct: 67  DYR---KLPAAERRAYDKILSFLIFLDSLQSANLP-AVGEYITANEVNLCLAIQTFQETV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L          +     D   E L
Sbjct: 123 HSQSYSYMLDTICEP------QERNDVLYQWKEDEHLLARNEFIGNLYNQFQDDKSPEAL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + V   + EG++FY+GF    +LGR N M G  ++ +YI RDE+ HL    +++ ++K
Sbjct: 177 ARVLVANYILEGVYFYSGFMFFYNLGRNNLMPGSVQEIRYINRDENTHLWLFRNILLELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+  E  ++ R M+ E    EI + H  +     GLN      Y+Q++ N RC Q
Sbjct: 237 EEEPELFAPELVEEYRAMIKEGCEQEIRWGHYAIGDDVAGLNKQMVTDYIQYLGNLRCAQ 296

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G EPL++  E       W+S+  +    + +FFE R T Y + + L  D
Sbjct: 297 LGFEPLYEGHEREPESMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346


>gi|85710107|ref|ZP_01041172.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1]
 gi|85688817|gb|EAQ28821.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1]
          Length = 346

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/323 (25%), Positives = 152/323 (47%), Gaps = 18/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
            N   P +Y WA+E +      HWMP EVP+ +D   W     LT+ ER ++ +   FF 
Sbjct: 7   RNTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQ--NLTEHERNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + 
Sbjct: 65  QADVEVQDCYHDKYGRVFKPTEIKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  K N+  Q+            + D D++  + L +F    EG+  +  FA +++
Sbjct: 124 DYEEMADKHNYMHQF------------SVDTDEDIARTLAMFGGFTEGLQLFASFAMLMN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   + +RDE+LH    I + +    E     TK  ++    +  +   
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDETLHCEGIIKMFHTFCEERD-CLTKAVKEDIIDICQKTVR 230

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE A+       G   G+ A   ++Y+++IA+ R  Q+ L+P++   E+P PW+S +++ 
Sbjct: 231 LEDAFIDLAFEMGPVEGMTAKDIKKYIRYIADWRLGQLNLQPIYMIDEHPLPWLSPLLNG 290

Query: 330 KKEKNFFETRVTEYQQ-GAELKW 351
            +  NFFE R TEY +   +  W
Sbjct: 291 VEHANFFEARATEYSKGATKGNW 313


>gi|149185037|ref|ZP_01863354.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21]
 gi|148831148|gb|EDL49582.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21]
          Length = 352

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 81/323 (25%), Positives = 149/323 (46%), Gaps = 18/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y WA+E +      HWMP EVP+ +D   W     LT+ ER ++ +   FF 
Sbjct: 7   RKTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQ--KLTEHERNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + 
Sbjct: 65  QADVEVQDCYHDKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  K N+  Q+              D D++  + L +F    EGM  +  FA +++
Sbjct: 124 DYEEMADKHNYMQQF------------GVDNDEDIARTLAMFGAFTEGMQLFASFAMLMN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   + +RDESLH    I + ++   E     TK  ++    +  +   
Sbjct: 172 FPRFNKMKGMGQIVSWSIRDESLHCEGIIRMFHEFVRERD-CLTKAVKEDIIDICQKTVR 230

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE  +       G   G+     ++Y+++IA+ R  Q+ L+P++   ++P PW++ +I+ 
Sbjct: 231 LEDNFIDLAFEMGPVSGMTPKDIKKYIRYIADWRLGQLNLDPIYMVDDHPLPWLAPLING 290

Query: 330 KKEKNFFETRVTEYQQ-GAELKW 351
            +  NFFE R TEY +   +  W
Sbjct: 291 VEHANFFEQRATEYSKGATKGDW 313


>gi|295691241|ref|YP_003594934.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC
           21756]
 gi|295433144|gb|ADG12316.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC
           21756]
          Length = 346

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 141/320 (44%), Gaps = 18/320 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P +Y WA++ +      HWMP EVP+ +DL  W     L D ER ++ +   FF  S+
Sbjct: 19  YKPFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V +N +    R     E +  L   A  E +H   +  ++ ++G+ E E F+ + E  
Sbjct: 77  VEVQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYE 135

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++  K ++              T   D++ +  + L +F    EG+  +  FA +++  R
Sbjct: 136 AMKDKHDYMQ------------TFGVDSNADICRTLAMFGGFTEGLQLFASFAMLMNFPR 183

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDESLH +  I + +    E     TK               LE 
Sbjct: 184 FNKMKGMGQIVSWSIRDESLHCDGIIKLYHAFNKET-GAVTKAVADDIVDCCKHVVGLED 242

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G   G+     + Y++FIA+ R  Q+ L  ++   ENP PW+  ++   + 
Sbjct: 243 KFIDLAFEAGEIQGMTPDDIKSYIRFIADWRLRQLQLPEVYGVKENPLPWLQSLLSGVEH 302

Query: 333 KNFFETRVTEYQQ-GAELKW 351
            NFFE R TEY +   +  W
Sbjct: 303 ANFFEARATEYSKAATKGSW 322


>gi|194319980|pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B
 gi|194319981|pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B
          Length = 326

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 149/324 (45%), Gaps = 28/324 (8%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  +  +++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 28  ESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 84

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 85  LKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 144

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++                 +    +  
Sbjct: 145 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA-------------DRKSTFGERV 191

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +     
Sbjct: 192 VAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 248

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               K  +++ R ++ +A  +E  +  E +P G +G+N    +QY++F+A+R   ++G  
Sbjct: 249 ----KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS 304

Query: 311 PLFKYTENPFPWMSEVIDLKKEKN 334
            +F   ENPF +M E I L+ + N
Sbjct: 305 KVF-QAENPFDFM-ENISLEGKTN 326


>gi|323692021|ref|ZP_08106269.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14673]
 gi|323503944|gb|EGB19758.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
           WAL-14673]
          Length = 347

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +   ++  +RM+N  + ++N    +KY W    Y  A NN W+P E+ +  D+  +
Sbjct: 9   LFNPDGDTDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDVKDY 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                LT  ER    + L F    +S+   N+  AI  +++  E    L  Q F+EAVHS
Sbjct: 69  ---PLLTVGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQIFQEAVHS 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ ++           R       K +  L    T     +    KD        
Sbjct: 125 QSYSYMLDTICEP------QTRNEVLYQWKNDGHLLARNTFIGGLYNEFQKDKTPFAFVK 178

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +LGR +KM G A++ +YI RDE+ HL     +I +++ E
Sbjct: 179 TLIANYILEGIYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFGSIIRELQTE 238

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+++E     R M+ E    EIA+    +     GL       Y++++ N RC  +G
Sbjct: 239 EPSLFSREKTDCYREMIREGCEQEIAWGCYAIGDEVPGLTKQMITDYIRYLGNLRCSNLG 298

Query: 309 LEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            EPL+    +      W+S+  +    + +FFE R T Y + + L  D
Sbjct: 299 FEPLYDGYVHEPETMAWVSQYSNANMIKTDFFEARSTAYAKSSALVDD 346


>gi|323486976|ref|ZP_08092290.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum
           WAL-14163]
 gi|323399688|gb|EGA92072.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum
           WAL-14163]
          Length = 347

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +   ++  +RM+N  + ++N    +KY W    Y  A NN W+P E+ +  D+  +
Sbjct: 9   LFNPDGDTDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDVKDY 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                LT  ER    + L F    +S+   N+  AI  +++  E    L  Q F+EAVHS
Sbjct: 69  ---PLLTVGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQIFQEAVHS 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ ++           R       K +  L    T     +    KD        
Sbjct: 125 QSYSYMLDTICEP------QTRNEVLYQWKNDGHLLARNTFIGGLYNEFQKDKTPFAFVK 178

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +LGR +KM G A++ +YI RDE+ HL     +I +++ E
Sbjct: 179 TLIANYILEGIYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFGSIIRELQTE 238

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+++E     R M+ E    EIA+    +     GL       Y++++ N RC  +G
Sbjct: 239 EPSLFSREKTDCYREMIREGCEQEIAWGCYAIGDEVPGLTKQMITDYIRYLGNLRCSNLG 298

Query: 309 LEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            EPL+    +      W+S+  +    + +FFE R T Y + + L  D
Sbjct: 299 FEPLYDGYAHEPETMAWVSQYSNANMIKTDFFEARSTAYAKSSALVDD 346


>gi|189184364|ref|YP_001938149.1| ribonucleotide-diphosphate reductase subunit beta [Orientia
           tsutsugamushi str. Ikeda]
 gi|189181135|dbj|BAG40915.1| ribonucleoside-diphosphate reductase beta chain [Orientia
           tsutsugamushi str. Ikeda]
          Length = 359

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/331 (26%), Positives = 156/331 (47%), Gaps = 20/331 (6%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +LNAR       P  Y WA++ + +    HW+P EVP+ DD+  WK    LT  E+ ++ 
Sbjct: 18  LLNARP---IYKPFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWK--YNLTPGEKHLLT 72

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           +   FF  ++  V N  +    R     E +  L   +  E +H   + +++ ++G+ E 
Sbjct: 73  QIFRFFTQADIEVNNCYMKHYARVFQPTEVQMMLSAFSNMETIHIAAYSHLLDTIGMPET 132

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E +  + +  ++  K ++  ++              D  +E    L VF    EG+  + 
Sbjct: 133 E-YQAFMKYKAMKDKYDYMQRF------------NVDNKEEIATTLAVFGAFTEGVQLFA 179

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
            FA +L+  R NKM G+ +   + +RDE+LH N  I +      E P +WT++ + +   
Sbjct: 180 SFAILLNFPRYNKMKGMGQIITWSVRDETLHTNSIITLFKTFIQEYPEVWTEQLKSRIYE 239

Query: 264 MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
                   E A+       G   GL A   ++Y+++IA+RR  Q+GL+  +   +NP  W
Sbjct: 240 ACCTIIHFEDAFIDLAFEVGGVEGLEARDVKKYIRYIADRRLLQLGLKENYLIEQNPLTW 299

Query: 323 MSEVIDLKKEKNFFETRVTEYQQ-GAELKWD 352
           + ++++  +  NFFE RVTEY +      WD
Sbjct: 300 LDQILNGVEHTNFFENRVTEYTRSATTGSWD 330


>gi|157952945|ref|YP_001497837.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123172|gb|ABT15040.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 324

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 95/334 (28%), Positives = 161/334 (48%), Gaps = 29/334 (8%)

Query: 21  DKRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            + +L+          P++Y   W  Y  A    W   EVP+  D+A W+    L +DER
Sbjct: 4   QEPILSDNGSRKFSAFPIQYHDLWNMYKKAVATFWTTEEVPLNADVADWRE--KLNNDER 61

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             IK  LGFFA S+ +V  N+       +  PE RQ+   Q F E+VHS  +  +I +L 
Sbjct: 62  HFIKHILGFFAGSDGIVMENLQTNFGVEVMAPEARQFYAYQTFNESVHSEMYALLIDALI 121

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            DE E   LF+    +P++  KA WA ++                ++ F + L  + +  
Sbjct: 122 SDEQERLDLFDAIETIPAVHNKAKWAQKWL-------------KPERSFAERLVAW-ICV 167

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG+ F   F  +  L     M G+    ++I RDE LH  FG  + ++++ +        
Sbjct: 168 EGILFSGSFCALFWLRNKGVMPGLCLSNEFISRDEGLHQQFGELMYSKLQNKLSF----- 222

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             +  + ++ EA   E  +  + +P   +G+NA    QY++F+A+R    +G E ++  +
Sbjct: 223 --ETIKQIIMEAVTNEKEFICDAIPCSMIGMNADLMNQYIEFVADRIFTALGYEKVYN-S 279

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +NPF +M E+I L+ + NFFE RV++YQ+   + 
Sbjct: 280 KNPFAFM-ELISLEGKTNFFEKRVSDYQRPGVMN 312


>gi|291276761|ref|YP_003516533.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
           mustelae 12198]
 gi|290963955|emb|CBG39794.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
           mustelae 12198]
          Length = 344

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/352 (25%), Positives = 174/352 (49%), Gaps = 13/352 (3%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
                   I   E   +V+D+++       +  L  +KY WA++ + +   N W P EV 
Sbjct: 3   DVRVDRKKIYNPESIESVNDRKIFGGNPTSMFDLNKIKYQWAYDLWKTMLANTWFPEEVS 62

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M +D   + +   LT  E+L   R L      +SL  NN++  +  ++++PE    L+RQ
Sbjct: 63  MNEDKRDYNNL--LTAQEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQ 120

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           A+EEA+HS ++  ++ S+  +  E+++M+R    + +K ++       L+        ++
Sbjct: 121 AYEEALHSQSYAVMVESISANTDEIYDMWRVDMQLKSKNDYIANVYMKLA--------QN 172

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             +  +        + EG++FY+GFA   +L    KM+G ++  ++I RDE  HL    +
Sbjct: 173 PTERNIVKAMFANQILEGIYFYSGFAFFYALASTGKMLGSSQMIRFIQRDEVTHLILFQN 232

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  +K E P L+ K+ +++   M   A  +E A+         +GL      QY+Q++A
Sbjct: 233 MIRTLKKERPDLFDKDLEEEIVEMFRRAVEIEAAWGEYITQGQILGLTGEVIHQYIQYLA 292

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKW 351
           ++R  ++G+  L+   E+P  W+ +     ++  NFFE +VT Y +G+ +  
Sbjct: 293 DQRLSKVGMPKLYNV-EHPIKWVEQYASFNEQRTNFFEAKVTNYAKGSLIDD 343


>gi|160937686|ref|ZP_02085046.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439331|gb|EDP17083.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC
           BAA-613]
          Length = 347

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   +   + + +RM+   + ++N    +KY WA   Y  A NN W+P E+ +  DL 
Sbjct: 7   KPLFNPQGDTDKNSRRMIGGNTTNLNDFNNMKYTWASSWYRQAMNNFWIPEEINLSADLK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    LT  ER    + L F    +S+   N+   I ++++  E    L  Q F+EAV
Sbjct: 67  DYK---NLTAAERTAYDKILSFLVFLDSIQTANLP-CIAQYITANEVNLCLTIQGFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+         + R+      K +  L    T     +    +  D   L
Sbjct: 123 HSQSYSYMLDSICSP------VERDRILYQWKEDEHLLRRNTFIGNLYNEFQEKKDDVTL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I +++
Sbjct: 177 LRVIMANYILEGIYFYSGFMFFYNLGRGGKMPGSVQEIRYINRDENTHLWLFRSMIAELR 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +     R+ML E    EI +    +     GL       Y++++ N R   
Sbjct: 237 KEEPQLFTPKMVDMLRSMLEEGVAQEIQWGCYVIGDDVPGLTREMVTDYIRYLGNLRWSG 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G   L++ Y E P    W+++  +    + +FFE + T Y + A +  D
Sbjct: 297 LGFGTLYEGYDEEPQSMKWVNQYSNANMVKTDFFEAKSTAYAKSAAIVDD 346


>gi|307719930|ref|YP_003891070.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM
           16294]
 gi|306978023|gb|ADN08058.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM
           16294]
          Length = 340

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 99/349 (28%), Positives = 172/349 (49%), Gaps = 15/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I   +   NV+D+++       + +L  +KY WA+  +    NN W P EV M  D
Sbjct: 2   NRKQIYNPDSTENVNDRKVFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  +K    LTD E+    + L      +SL  NN++  +  +++ PE    L+RQ+FEE
Sbjct: 62  VNDYKQ---LTDAEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTAPEINLILVRQSFEE 118

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HS ++  ++ S+  +  E+++++R    +  K +      Q L+        K+    
Sbjct: 119 ALHSQSYAVMVDSISTNSEEIYDLWRRDMMLKHKNDTIAAVYQELA--------KNPTDS 170

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                     + EG++FY+GF  I +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 171 NFVKACFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINT 230

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E P L+T E +     M  EA  LE  +         +GL     EQY+Q++A+ R 
Sbjct: 231 LRKERPDLFTDELRADVIEMFKEAVKLETEWGKYITQGQILGLTDEIVEQYIQYLADDRL 290

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           + +G + L+  + NP  W+ +      ++ NFFE  VT Y +G+ L +D
Sbjct: 291 NSVGFDKLYNVS-NPIKWVDDFAKFNDQKTNFFEGTVTNYSKGS-LSFD 337


>gi|163955147|ref|YP_001648251.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5]
 gi|163638596|gb|ABY27955.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5]
          Length = 322

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/339 (26%), Positives = 151/339 (44%), Gaps = 31/339 (9%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           V  +   +L +  +   + PLKY   WE Y  A  ++W   EV +  DL  WK+   L +
Sbjct: 2   VEEEYDPILASTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 58

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           +E+  IK  L FFA S+ +V  NI       +   E R +   Q   E VH  T+  +I 
Sbjct: 59  NEQKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLID 118

Query: 137 SLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
               D     ELF   + VP I  KA WA+++              D       +    +
Sbjct: 119 KYIKDPSEKKELFEAIQTVPCIEKKAQWAMKW-------------FDTKSRSFAERLFAF 165

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   F  I  L +   M G+    + I RDE LH  F +++   ++       
Sbjct: 166 ACVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLRN------ 219

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            +        ++ EA  +E  +  + +P   +G+N+    +Y++++++R   QIG+  ++
Sbjct: 220 -RPGVDTIHAIVREAVEIEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQIGVPTIW 278

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             ++NPF +M E I L  + NFFE RV +Y    +L  D
Sbjct: 279 N-SKNPFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 312


>gi|225873704|ref|YP_002755163.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791613|gb|ACO31703.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium
           capsulatum ATCC 51196]
          Length = 340

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 100/321 (31%), Positives = 174/321 (54%), Gaps = 8/321 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   ++ +     N W   EV  Q DL   K +  L+  E  +I+R + FFA+ 
Sbjct: 18  TLRPMRYPVFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LSPAEVHLIQRLVAFFATG 75

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--- 149
           +S+V+NN+VL +Y+H+++PE R YL RQ +EEAVH   +  ++ +   D       +   
Sbjct: 76  DSIVSNNLVLNLYKHINSPEARLYLSRQLYEEAVHVQFYLTLLDNYVPDPEARAAAFAAV 135

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI+ KA++ +++  ++        T++  ++FL +L  F    EG++F+  FA + 
Sbjct: 136 ENIPSISKKADFCMKWMDSIQQLD-ELKTREHRRQFLLNLICFAACIEGLFFFAAFAYVY 194

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L     + G+A    ++ RDES HL F  +V+N ++ + P LW  + +     MLHEA 
Sbjct: 195 FLRSKGLLHGLASGTNWVFRDESCHLEFAFEVVNVVRSQEPDLWDAQLEADIVEMLHEAV 254

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E  +A + +  G  GL+     QY+ ++A+ R  ++G+ P F   +NPF +M E+ D+
Sbjct: 255 DAETQFAEDLLSGGVAGLSVRDMRQYLGYVADSRLQRLGIAPAFGV-KNPFSFM-ELQDV 312

Query: 330 KKEKNFFETRVTEYQQGAELK 350
           ++  NFFE RV+ YQ     +
Sbjct: 313 QELTNFFERRVSAYQTAVAGE 333


>gi|168702494|ref|ZP_02734771.1| ribonucleoside-diphosphate reductase, beta subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 332

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 102/320 (31%), Positives = 169/320 (52%), Gaps = 8/320 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E Y  A  N W   EV    DLA  +    +T  ER +I R + FFA+ 
Sbjct: 10  TLRPMRYPPFFEMYKDAIKNTWTVDEVDFSTDLADLR--GRVTPAERHLIHRLVAFFATG 67

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR-- 150
           +S+V NN+VL +Y+H++ PE R YL RQ +EEA+H   +  ++ +   D       +   
Sbjct: 68  DSIVGNNLVLNLYKHVNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDMAAREAAFAAV 127

Query: 151 -EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA++  ++  ++        T+   + FL +L  F    EG++F+  FA + 
Sbjct: 128 DNIPSIKLKADFCFKWIDSIEGLD-RLETRAHRRAFLLNLVCFAACIEGLFFFAAFAYVY 186

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L     + G+A    ++ RDES H+ F   VI+ ++ E P L+  E + +   ML EA 
Sbjct: 187 FLRSKGLLHGLATGTNWVFRDESAHMAFAFRVIDTVRREEPDLFDAELEAQIVAMLREAV 246

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E A+A + + +G  GL+      Y++++A+RR   +G+ P+F   +NPF +M  + D+
Sbjct: 247 ECETAFARDVLGQGVAGLSLADLRSYLEYVADRRLESLGIAPVFG-AKNPFGFMD-LQDV 304

Query: 330 KKEKNFFETRVTEYQQGAEL 349
           ++  NFFE RV+ YQ G   
Sbjct: 305 QELTNFFERRVSAYQLGVTG 324


>gi|22788780|ref|NP_690492.1| Rr2 [Heliothis zea virus 1]
 gi|22671540|gb|AAN04367.1|AF451898_72 Rr2 [Heliothis zea virus 1]
          Length = 333

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 153/328 (46%), Gaps = 24/328 (7%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
           L   S    L P++Y   WE Y  A  + W   EV +  DL  W+++  LT+ ER  I  
Sbjct: 13  LEEPSSRFTLFPIRYHDIWEMYKKAQASFWTVEEVDLSKDLYDWETR--LTETEREFISH 70

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142
            L FFA S+ +V +N++    + L+ PE   +   Q   E VHS  +  +I     D   
Sbjct: 71  ILAFFAGSDGIVNDNLLTRFSQELTIPEVSCFYGFQIMIENVHSEMYSTLIDMYIRDPQR 130

Query: 143 -GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
              LFN    VPSI  KA W +++              D D+    D  V +   EG++F
Sbjct: 131 KHMLFNAIDTVPSIRKKAQWVIRWI-------------DDDKSSYADRLVAFAAVEGIFF 177

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
              FA I  L +   M G+    ++I RDE LH +F I +             +   +K 
Sbjct: 178 SGSFAAIFWLKKRGLMPGLTHSNEFISRDEGLHCDFAILLFRNYLR----PECRSSDEKV 233

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
             ++ +A  +E  +  E++P   +G+N     +Y++F+A+R  +++    ++   +NPF 
Sbjct: 234 INIVTDAVRIEQEFLTESLPVSMIGMNCKLMCEYIEFVADRLLYELIGRKIYN-AKNPFD 292

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +M+  I L+ + NFFE +V+EY++    
Sbjct: 293 FMTS-ISLEGKTNFFEKKVSEYKRYGVG 319


>gi|229816571|ref|ZP_04446870.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM
           13280]
 gi|229807906|gb|EEP43709.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM
           13280]
          Length = 352

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 158/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+      ++V D+RM+   + ++N    +KY W    Y  A NN W+P E+ +  D+ 
Sbjct: 12  KPLFNPNGDLDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINLTQDVK 71

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L++ ER    + L F    +SL + N+   I  +++  E    L  QAF+E+V
Sbjct: 72  DY---PRLSEAERAAYDKILSFLVFLDSLQSANLP-NIAEYITANEVNLCLSIQAFQESV 127

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L    T     +    +  D    
Sbjct: 128 HSQSYSYMLDTICDPAK------RNEILYQWKTDKHLLARNTFIGDLYNEFQEHRDARTF 181

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL     +I +++
Sbjct: 182 LRVLMANYILEGVYFYSGFMFFYNLARMGKMPGSAQEIRYINRDENTHLWLFRSIILELQ 241

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L++ E     R ML E    EIA+    +     GL     E Y++++ N R   
Sbjct: 242 KEEPQLFSNENVTMLREMLEEGVRQEIAWGRYVLGDAIPGLTGDMVEGYIKYLGNLRWSS 301

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G   L++ Y   P    W+S+  +    + +FFE + T Y +   L  D
Sbjct: 302 LGFGQLYEGYRTEPADMAWVSQYSNANMVKTDFFEAKSTAYAKSTALVDD 351


>gi|317122809|ref|YP_004102812.1| ribonucleoside-diphosphate reductase [Thermaerobacter marianensis
           DSM 12885]
 gi|315592789|gb|ADU52085.1| Ribonucleoside-diphosphate reductase [Thermaerobacter marianensis
           DSM 12885]
          Length = 336

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 120/327 (36%), Positives = 190/327 (58%), Gaps = 5/327 (1%)

Query: 23  RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           R+L     +  QL PL+Y WA+        N W P E+P+ DD+  W+    LTDDER  
Sbjct: 11  RLLGGDPLEPIQLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWE--LRLTDDERRA 68

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           ++  LGFF   ESLV +N+V++IY  L+ PE R YL RQ +EEA H+  F+Y++ +L +D
Sbjct: 69  VELLLGFFNPMESLVTHNLVMSIYPLLTPPEVRLYLARQIWEEANHTMAFEYVLKTLPVD 128

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
              +F  +R+VP+I AK  +  + T+ L        T +  Q FL++L  +Y+V EG++F
Sbjct: 129 RERVFAAHRDVPAIRAKEAFQQELTRQLLV-RPDVSTLEGRQAFLRNLIGYYIVLEGVFF 187

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y GF    +  R N + G+A    ++++DESLHL+FGI +I  +  E+P L T EF ++ 
Sbjct: 188 YGGFLFAYTFRRRNLLKGLATLVDWVLKDESLHLSFGIHLITTLLEEHPELMTPEFAREV 247

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
           + ++  A  LE  Y    +P+  +G++A     Y++++ +RR  ++GL P F  T NP  
Sbjct: 248 KGLILRAVELERDYNRALLPRPILGVSADYLNAYIEYVTDRRLDELGLGPHFG-TPNPAQ 306

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE 348
           WM+  +D+ +  NFFE R   Y+  A+
Sbjct: 307 WMATEVDVPEIVNFFEARNIHYEVAAD 333


>gi|16124515|ref|NP_419079.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter
           crescentus CB15]
 gi|221233200|ref|YP_002515636.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter
           crescentus NA1000]
 gi|13421393|gb|AAK22247.1| ribonucleoside-diphosphate reductase, beta subunit [Caulobacter
           crescentus CB15]
 gi|220962372|gb|ACL93728.1| ribonucleoside-diphosphate reductase beta chain [Caulobacter
           crescentus NA1000]
          Length = 347

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/320 (25%), Positives = 143/320 (44%), Gaps = 18/320 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P +Y WA++ +      HWMP EVP+ +DL  W     L D ER ++ +   FF  S+
Sbjct: 19  YKPFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSD 76

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V +N +    R     E +  L   A  E +H   +  ++ ++G+ E E F+ + E  
Sbjct: 77  VEVQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYE 135

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++ AK ++              T   D++ +  + L +F    EG+  +  FA +++  R
Sbjct: 136 AMKAKHDYMQ------------TFGVDSNADICRTLAMFGGFTEGLQLFASFAMLMNFPR 183

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDESLH +  I + +    E     TK               +E 
Sbjct: 184 FNKMKGMGQIVSWSIRDESLHCDGIIKLYHAFNKET-GAVTKAVADDIVDCCKTVVGMED 242

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G   G+     + Y++F+A+ R  Q+ L  ++   ENP PW+  ++   + 
Sbjct: 243 NFIDLAFEAGDIQGMTPDDIKAYIRFVADWRLRQLHLPEVYGVKENPLPWLQSLLSGVEH 302

Query: 333 KNFFETRVTEYQQ-GAELKW 351
            NFFE R TEY +   + +W
Sbjct: 303 ANFFEARATEYSKAATKGQW 322


>gi|56551339|ref|YP_162178.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241760992|ref|ZP_04759081.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753042|ref|YP_003225935.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|56542913|gb|AAV89067.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374611|gb|EER64072.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552405|gb|ACV75351.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 345

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 147/321 (45%), Gaps = 18/321 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA+E +      HW+P EVP+ +D   W     L+D ER ++ +   FF  +
Sbjct: 9   VYKPFEYPWAFEFWQRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + + 
Sbjct: 67  DVEVQDCYFDKYGRIFRPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQY 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++              T    +DQ+  + L +     EG+  +  FA +++  
Sbjct: 126 KEMKDKHDY------------LATFDVGSDQDIARTLAMMGGFTEGLQLFASFAMLMNFP 173

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDESLH    I + +    E     TK+ +     +      +E
Sbjct: 174 RFNKMKGMGQIVSWSVRDESLHCEGIIRLFHTFCQER-QCLTKQVKDDILNICQRTVRIE 232

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G   G+     ++Y+++IA+ R  Q+GL P++   E+P PW++ +++  +
Sbjct: 233 DAFIDLVFEMGPVEGMTPKEIKKYIRYIADWRLGQLGLSPIYMIEEHPLPWLTPLLNGVE 292

Query: 332 EKNFFETRVTEYQQ-GAELKW 351
             NFFETR TEY +   +  W
Sbjct: 293 HANFFETRSTEYSKAATKGDW 313


>gi|210631890|ref|ZP_03297102.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279]
 gi|210159815|gb|EEA90786.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279]
          Length = 352

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 160/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   +  ++V D+RM+   + ++N    +KY W    Y  A NN W+P E+ +  D+ 
Sbjct: 12  KPLFNPDGDLDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINLTQDVK 71

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     LT  ER    + L F    +SL + N+   I  +++  E    L  QAF+E+V
Sbjct: 72  DY---PRLTAAERAAYDKILSFLVFLDSLQSANLP-NIAEYITANEVNLCLSIQAFQESV 127

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L    T     +    +  D    
Sbjct: 128 HSQSYSYMLDTICDPAK------RNEILYQWKTDEPLLARNTFIGNLYNEFQERRDARTF 181

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 182 LRVLMANFILEGVYFYSGFMFFYNLARMGKMPGSAQEIRYINRDENTHLWLFRNIILELQ 241

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  +  R ML E    EIA+    +     GL     E Y++++ N R   
Sbjct: 242 KEEPQLFTSENVEMLRQMLEEGVRQEIAWGRYVLGDAIPGLTGDMVEGYIKYLGNLRWSS 301

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G   L++ Y   P    W+S+  +    + +FFE + T Y +   L  D
Sbjct: 302 LGFGQLYEGYRSEPEDMAWVSQYSNANMVKTDFFEAKSTAYAKSTALVDD 351


>gi|148554425|ref|YP_001262007.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas
           wittichii RW1]
 gi|148499615|gb|ABQ67869.1| Ribonucleoside-diphosphate reductase [Sphingomonas wittichii RW1]
          Length = 350

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 151/321 (47%), Gaps = 18/321 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA+E +      HW+P EVP+ +D   W     LTD ER ++ +   FF  +
Sbjct: 9   TYKPFEYPWAFEYWKRQQQLHWLPEEVPLGEDCRDWAQ--KLTDHERNLLTQIFRFFTQA 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V +       R     E +  L   +  E VH   + +++ ++G+ E E ++ + + 
Sbjct: 67  DVEVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQY 125

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  K ++             +T   D D++  + L +F    EG+  +  FA +++  
Sbjct: 126 KEMKDKHDY------------LSTFGVDTDEDIARTLAMFGGFTEGLQLFASFAMLMNFP 173

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDE+LH    + + +    E     T   +     M  +   +E
Sbjct: 174 RFNKMKGMGQIVTWSIRDETLHCEGIVRLFHAFVKERD-CLTASVKDDILDMCQKTVRIE 232

Query: 273 IAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            A+       G V G+     ++Y+++IA+ R  Q+GL+P++   ++P PW++ +++  +
Sbjct: 233 DAFIDLVFEMGPVNGMTPKDIKKYVRYIADWRLGQLGLKPIYMIEDHPLPWLAPLLNGVE 292

Query: 332 EKNFFETRVTEYQQ-GAELKW 351
             NFFETR TEY +   + +W
Sbjct: 293 HANFFETRATEYSKAATKGQW 313


>gi|325831705|ref|ZP_08164922.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp.
           HGA1]
 gi|325486576|gb|EGC89025.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp.
           HGA1]
          Length = 347

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/350 (27%), Positives = 163/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +V D+RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPLGDTDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L   ER    + L F    +SL + N+  A+  +++  E    L  Q F+E V
Sbjct: 67  DYR---KLPASERRAYDKILSFLIFLDSLQSANLP-AVGEYITANEVNLCLAIQTFQETV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L          +     D   E L
Sbjct: 123 HSQSYSYMLDTICEP------QERNDVLYQWKEDEHLLARNEFIGNLYNQFQDDKSPEAL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + V   + EG++FY+GF    +LGR N M G  ++ +YI RDE+ HL    +++ ++K
Sbjct: 177 ARVLVANYILEGVYFYSGFMFFYNLGRNNLMPGSVQEIRYINRDENTHLWLFRNILLELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  ++ R M+ E    EI + H  +     GLN      Y+Q++ N RC Q
Sbjct: 237 EEEPELFTPELVEEYRAMIKEGCEQEIRWGHYAIGDEVAGLNKQMVTDYIQYLGNLRCTQ 296

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G EPL++  E       W+S+  +    + +FFE R T Y + + L  D
Sbjct: 297 LGFEPLYEGHEREPESMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346


>gi|329888543|ref|ZP_08267141.1| ribonucleotide reductase, small chain family protein [Brevundimonas
           diminuta ATCC 11568]
 gi|328847099|gb|EGF96661.1| ribonucleotide reductase, small chain family protein [Brevundimonas
           diminuta ATCC 11568]
          Length = 348

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 83/316 (26%), Positives = 141/316 (44%), Gaps = 17/316 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P +Y WA++ +      HWMP EVPM +D+  W     L D ER ++ +   FF  ++
Sbjct: 22  YKPFRYPWAFDMWKKQQQVHWMPEEVPMGEDVKDWA--ANLNDGERNLLTQIFRFFTQAD 79

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V +N +    R     E +  L   A  E +H   +  ++ ++G+ E E F  + E  
Sbjct: 80  IEVQDNYMERYGRVFKPTEVKMMLAAFANMETIHIAAYALLLETIGMPESE-FGAFMEYE 138

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++  K ++  Q+              D+D +  + L +F    EG+  +  FA +++  R
Sbjct: 139 AMKDKHDYMGQF------------GVDSDADICRTLAMFGGFSEGLQLFASFAMLMNFPR 186

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            +KM G+ +   + +RDESLH    I + +    E     TK               +E 
Sbjct: 187 QSKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKET-GAVTKAVADDIVDCCKTVIEMED 245

Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G V G+     + Y++FIA+ R  Q+ L  ++  TENP PW+  ++   + 
Sbjct: 246 KFIDLAFEMGPVNGMTPDDIKAYIRFIADWRLRQLHLPEVYGVTENPLPWLQALLSGVEH 305

Query: 333 KNFFETRVTEYQQGAE 348
            NFFE R TEY + A 
Sbjct: 306 ANFFEARATEYSKAAT 321


>gi|182419335|ref|ZP_02950587.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           butyricum 5521]
 gi|237666940|ref|ZP_04526925.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376666|gb|EDT74238.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           butyricum 5521]
 gi|237658139|gb|EEP55694.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 344

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 98/348 (28%), Positives = 168/348 (48%), Gaps = 13/348 (3%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+        +  KR++N  + ++N    +KY W  + Y    NN W+P EV +  DL 
Sbjct: 6   KPLFNEFGDREITKKRLINGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEVNLSQDLK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L D+ER+   + L F    +S+   N+   I  +++  E    L  Q+F+EAV
Sbjct: 66  DYQ---NLLDEERIAYDKILSFLIFLDSIQTANLS-NINNYITASEVNLCLTIQSFQEAV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       K +  L          +     +  +E L
Sbjct: 122 HSQSYSYMLDSICSPEK------RNEILYQWKDDEILLNRNKFIGDLYNEFIDNPTEETL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 176 LKTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            EN  L+T+E + + R M+      EI + H  +     G+N    E+Y++++ N+R  +
Sbjct: 236 NENAELFTEEIKNELREMMKTGVEQEILWGHYVIGDKIQGINKKLIEEYIKYLGNKRLKE 295

Query: 307 IGLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           I LEPLF+ +  NP PW+    +    + +FFE R T Y + A L  D
Sbjct: 296 INLEPLFEGHDVNPAPWVDRQSNANSVKTDFFEARSTAYAKAATLVDD 343


>gi|196233679|ref|ZP_03132520.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus
           Ellin428]
 gi|196222349|gb|EDY16878.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus
           Ellin428]
          Length = 390

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 119/343 (34%), Positives = 186/343 (54%), Gaps = 5/343 (1%)

Query: 10  IQAGEKRVNVDDKRMLNA--RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           +   + R  +  KR++N    +++N L PLKY  A+  Y     NHW P  + M  D   
Sbjct: 43  LDKAKARARLAGKRVINGLRSAELNVL-PLKYHEAYRIYKQMKANHWEPDVIDMTRDSQQ 101

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W +   L+  ER +I+  +G+F+++E +V ++++  I  +L+  E +   LR   EE++H
Sbjct: 102 WNT-GALSPKERWIIEMGVGYFSAAEGIVGDSVLHVIEDNLTAAELKHASLRHIAEESIH 160

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
             +  +II SL +D  E+   + ++PS+  K  +  ++   L      T T +  Q+F +
Sbjct: 161 MDSLLHIIGSLNIDLDEVTAKFSDIPSVQRKNAFITRHMPELKMGIDLTQTANK-QKFAK 219

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            +F    V EG  FY  FA ILSL R NKM GI + +QY +RDES H+  G  ++ Q+  
Sbjct: 220 AIFGITQVMEGTQFYALFAMILSLHRQNKMTGIGQMFQYTLRDESNHIELGRYILTQLIA 279

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           ENP +WT EF+ +    + E   LE  +  + +P+  VG+       Y+++ A+RR   +
Sbjct: 280 ENPDIWTPEFRAELVEFMREGVELEKEFVRDCLPEDGVGMTQADFLTYVEYNADRRLAGL 339

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            L  L     NPF W+ EVI L+KEKNFFETRVTEYQ    LK
Sbjct: 340 DLPALSGVKTNPFAWLDEVIFLRKEKNFFETRVTEYQTSGSLK 382


>gi|322510876|gb|ADX06189.1| putative ribonucleotide reductase small subunit [Organic Lake
           phycodnavirus 2]
          Length = 324

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 156/332 (46%), Gaps = 28/332 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
             + + +L    +   + P+     W+ Y    +  W P E+    D+  W   N L  D
Sbjct: 3   KKNTEPLLTEDDNRFVMFPVSDETIWKMYKKQVDCFWRPEEIDTSKDMTHW---NKLNTD 59

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  IK  L FFASS+ +V  N+ L     +   E R +   Q   E +HS T+  +I S
Sbjct: 60  EQYFIKMILAFFASSDGIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDS 119

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E   LF+     P I  K +WA+++ Q            D    F   L   + 
Sbjct: 120 YIKDSDEKHKLFHSLEHFPCIKKKGDWAMKWIQ------------DKKSSFATRLVA-FA 166

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++F   F  I  L +   M G+    + I RDE+LH  F + + N+++ +      
Sbjct: 167 CVEGIFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEALHTEFAVYLYNRLEKKLN---- 222

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
              ++K R ++ EA  +E  +  + +P   +G+N+    QY++F+A+R   Q+G + ++ 
Sbjct: 223 ---KKKVREIIEEAVTIEKEFIVDALPCRMIGMNSELMTQYIEFVADRLMMQLGCDVIY- 278

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
            T NPF +M E+I L+++ NFFE+RV+EY   
Sbjct: 279 ATNNPFDFM-ELISLEQKTNFFESRVSEYSLA 309


>gi|313903043|ref|ZP_07836438.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus
           DSM 13965]
 gi|313466767|gb|EFR62286.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus
           DSM 13965]
          Length = 336

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 119/327 (36%), Positives = 188/327 (57%), Gaps = 5/327 (1%)

Query: 23  RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           R+L     +  QL PL+Y WA+        N W P E+P+ DD+  W+    LTDDER  
Sbjct: 11  RLLGGDPLEPIQLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWE--LRLTDDERRA 68

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           ++  LGFF   ESLV +N+V++IY  L+ PE R YL RQ +EEA H+  F+Y++ +L +D
Sbjct: 69  VELLLGFFNPMESLVTHNLVMSIYPLLTPPEIRLYLARQIWEEANHTMAFEYVLKTLPVD 128

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
              +F  +R VP+I AK  +  + T+ L        T +  Q FL++L  +Y+V EG++F
Sbjct: 129 RERVFAAHRNVPAIRAKEAFQQELTRQLLV-RPDVSTLEGRQAFLRNLIGYYIVLEGVFF 187

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y GF    +  R N + G+A    ++++DESLHL+FGI +I  +  E+P L T  F ++ 
Sbjct: 188 YGGFLFAYTFRRRNLLKGLATLVDWVLKDESLHLSFGIHLITALLEEHPELMTPAFAREV 247

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
           + ++  A  LE  Y    +P+  +G++A     Y++++ +RR  ++GL P F  T NP  
Sbjct: 248 KGLILRAVELERDYNRALLPRPILGVSADYLNAYVEYVTDRRLDELGLGPHFG-TPNPAK 306

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE 348
           WM+  +D+ +  NFFE R   Y+  A+
Sbjct: 307 WMATEVDVPEIVNFFEARNIHYEVAAD 333


>gi|258648774|ref|ZP_05736243.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           tannerae ATCC 51259]
 gi|260851104|gb|EEX70973.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           tannerae ATCC 51259]
          Length = 350

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 89/351 (25%), Positives = 156/351 (44%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
             P+           KRM+N  + ++N    +KY W  + Y  A NN W+P E+ +  DL
Sbjct: 9   RKPLFNEHGDTETAKKRMINGNTTNLNDFNNMKYKWVSDWYRQAMNNFWIPEEINLGQDL 68

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +   + L   ER    + L F    +S+   N+   +  +++  E    L  Q F+EA
Sbjct: 69  KDY---SKLLPAERTAYDKILSFLIFLDSIQTANLP-NVSEYITASEVNLCLNIQTFQEA 124

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ ++   E       R+      K +  L          +     D     
Sbjct: 125 VHSQSYSYMLDTICSPEE------RDAILFQWKNDPILLNRNKFIGDLYNAFMNDRSTFQ 178

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
              + V   + EG++FY+GF    +LGR  KM G A++ +YI RDE+ HL     ++ ++
Sbjct: 179 FMKVLVANYILEGIYFYSGFMFFYNLGRNGKMPGSAQEIRYINRDENTHLWLFRSILLEL 238

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P ++T +     R M+ +    EI +    +     GL +     Y++++ N R  
Sbjct: 239 KKEAPEMFTPDKVDVYRQMIAQGVEEEIKWGEYVLGDKIEGLTSEMIRDYIKYLGNLRTT 298

Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +G +PL+  Y + P    W+S+  +    + +FFE R T Y + + L  D
Sbjct: 299 SLGFDPLYDGYDKEPPSMSWVSQYSNANMIKTDFFEARSTAYAKSSALIDD 349


>gi|78776214|ref|YP_392529.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurimonas
           denitrificans DSM 1251]
 gi|78496754|gb|ABB43294.1| Ribonucleoside-diphosphate reductase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 340

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 100/349 (28%), Positives = 175/349 (50%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I   E   NV+D+R+       + +L  +KY WA+  +    NN W P EV M  D
Sbjct: 2   NRKKIYNPESNENVNDRRIFGGNPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           ++ +K    +TD E+    + L      +SL  NNI+  I  ++++PE    L+RQA+EE
Sbjct: 62  VSDYKQ---ITDVEKASYDKALAQLIFMDSLQTNNIMDNINPYVTSPEINLILVRQAYEE 118

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HS ++  ++ ++  +  E++ ++R    +  K +   +  + LS        K+  + 
Sbjct: 119 ALHSQSYAVMVDTISTNSKEIYELWRRDMMLKGKNDAIARVYEELS--------KNPTEH 170

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                     + EG++FY+GFA I +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 171 NFVKACFANQILEGIYFYSGFAYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINS 230

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E P L+ ++ +++   M  EA  LE+A+         +GL     EQY+Q++A+ R 
Sbjct: 231 LRKERPDLFNEKLKEEVIEMFKEAVALEVAWGKYITGGQILGLTDAIIEQYIQYLADDRL 290

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             +G   L+  T NP  W+ +      ++ NFFE  V  Y +G+    D
Sbjct: 291 TSVGFAKLYNVT-NPIKWVDDFSKFNDQKTNFFEGTVANYSKGSLTFDD 338


>gi|325475472|gb|EGC78653.1| ribonucleoside-diphosphate reductase [Treponema denticola F0402]
          Length = 351

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 89/350 (25%), Positives = 162/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +      +    ++M+   + ++N    +KY WA + Y  A NN W+P E+ M  D+ 
Sbjct: 11  KALFNENGDIETHKRKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQ 70

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L+  E+    + L F    +S+   N+   + ++++  E    L  QAF+EAV
Sbjct: 71  DYR---KLSGPEKTAYDKILSFLIFLDSIQTANLP-NVGQYVTANEVNLCLTIQAFQEAV 126

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R       K +  L          +     D      
Sbjct: 127 HSQSYSYMLDTICSPEE------RTEILYQWKDDEHLLRRNKFIGDLYNEFQSDKSALAF 180

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + V   + EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     +I +++
Sbjct: 181 LKVCVANYILEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSMIQELQ 240

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +  +  R M+ E    EIA+ +  +     GLN+     Y+Q++ N RC  
Sbjct: 241 KEEPQLFTPQNVELFRGMIREGCEQEIAWGNYVIGNDIPGLNSQMITDYIQYLGNLRCEN 300

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G  P++  + E P    W+S+  +    + +FFE + T Y + + +  D
Sbjct: 301 LGFAPIYDGHKEEPQSMSWVSQYSNANLIKTDFFEAKSTAYAKSSAMVDD 350


>gi|258511567|ref|YP_003185001.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478293|gb|ACV58612.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 369

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 96/349 (27%), Positives = 165/349 (47%), Gaps = 13/349 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            + +   E   +   +R++   + ++ +L  +KY WA++ Y +  NN W+P E+P+ DD 
Sbjct: 29  RTRLFNAEGDRDWGKRRIIGGNTTNMIELNNIKYEWAYKLYRAMMNNFWIPEEIPLADDA 88

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +   + L+DDER    + L F    +SL+ +N+   I  +++ PE    L   AF+EA
Sbjct: 89  RQY---DLLSDDERRSYNKVLSFLIFMDSLLTHNLP-NINEYITAPEVNLCLTVHAFQEA 144

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ S+           R+      + +  L       +  F    ++     
Sbjct: 145 VHSQSYGYVLDSVVNP------ATRDQIYNEWRNDDHLLRRNQFITDLFEEFIENPTDRN 198

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V   + EG++FY GF     LGR  KM+G   + ++I RDE  HL    ++ ++I
Sbjct: 199 LMKTIVANYILEGVYFYAGFGFFFVLGRQGKMLGTVSEIKFIQRDELTHLAIFRNLYHEI 258

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
             ENP + T + +++   M+  A   EIA+         VGL     + Y++++AN R  
Sbjct: 259 IRENPGIVTPDMEEEFVEMMRTAVQHEIAWGQYVTQGKIVGLTDALIDAYIKYLANLRLQ 318

Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            + L  L+    E+P PWM     +     +FFE RVT Y +   L WD
Sbjct: 319 SLNLPILYPEIKEHPMPWMDSFAAINSHKTDFFEQRVTNYTKAGNLNWD 367


>gi|304321610|ref|YP_003855253.1| ribonucleoside-diphosphate reductase subunit beta [Parvularcula
           bermudensis HTCC2503]
 gi|303300512|gb|ADM10111.1| ribonucleoside-diphosphate reductase, beta subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 340

 Score =  233 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 145/320 (45%), Gaps = 18/320 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P +Y WA++ +      HWMP EVP+ +D   W   N LTD ER ++ +   FF  S+
Sbjct: 18  YKPFRYPWAYDYWKKQQQVHWMPEEVPLGEDCKDWA--NKLTDKERNLLTQIFRFFTQSD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V  N +          E R  L   +  E +H   +  ++ ++G+ E E F+ + +  
Sbjct: 76  VEVGANYMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLLETIGMPEVE-FSAFMDYE 134

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++ AK ++  ++              + +++ L  + VF    EG+  +  FA +++  R
Sbjct: 135 AMAAKHDYLGRF------------GVENERDILTSMAVFGGFTEGLQLFASFAMLMNFPR 182

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDESLH    + + ++   E     T                LE 
Sbjct: 183 FNKMKGMGQIVTWSIRDESLHCEGMVRLFHEFARET-GALTPAVADDIVDCCKTVVDLED 241

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            +       G   G+     + Y++ IA+ R  Q+GL P+F    +P PW+ E+++  + 
Sbjct: 242 KFIELAFEAGEVEGMTPDDIKAYIRHIADWRLSQLGLPPVFAADNHPLPWLREILNGVEH 301

Query: 333 KNFFETRVTEYQQGAE-LKW 351
            NFFE R TEY +GA   +W
Sbjct: 302 ANFFEARATEYSKGATRGEW 321


>gi|32266105|ref|NP_860137.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           hepaticus ATCC 51449]
 gi|32262154|gb|AAP77203.1| ribonucleoside diphosphate reductase [Helicobacter hepaticus ATCC
           51449]
          Length = 349

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 94/349 (26%), Positives = 175/349 (50%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I   E   +V D+++       +  L  +KY WA+  +     N W P EV M  D
Sbjct: 11  SRKQIYNPESTESVADRKIFGGNPTSMFDLNKIKYQWAYNLWKVMLANTWFPEEVNMTPD 70

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +    GLT  E+L   R L      +SL  NN++  +  ++++PE    L+RQA+EE
Sbjct: 71  KRDYN--GGLTAQEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAYEE 128

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HS ++  ++ S+  +  E++NM+R    + +K +        L+        K+ +++
Sbjct: 129 ALHSQSYAVMVESISANTDEIYNMWRVDMQLRSKNDNIANVYIELA--------KNPNEQ 180

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++I+ 
Sbjct: 181 NLLKAMFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMISS 240

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E  HL+T   +++   M  +A  +E  +         +GL +    +Y+Q++A+ R 
Sbjct: 241 LRKEQGHLFTPSLEEEVVEMFKKAVEIESQWGEYITQGQILGLTSEIIREYIQYLADARL 300

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             +GL  L+  ++NP  W+ +      ++ NFFE +VT Y +G+ + +D
Sbjct: 301 KAVGLPQLYG-SKNPIKWVDQFASFNDQKTNFFEAKVTNYSKGS-INFD 347


>gi|42523460|ref|NP_968840.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
           bacteriovorus HD100]
 gi|39575666|emb|CAE79833.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
           bacteriovorus HD100]
          Length = 336

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 104/334 (31%), Positives = 183/334 (54%), Gaps = 11/334 (3%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           +L+   D+  L P+KY   +E Y +   N W   EV    DL    S   +T+ E+ +I+
Sbjct: 6   ILDPGFDL-TLRPMKYPIFYEMYKNGIKNTWTVDEVDFSTDLVDLHS--KMTESEKHLIR 62

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R + FFA+ +S+V NN+VL +Y+H+++PE R YL RQ +EEA+H   +  ++ +   +  
Sbjct: 63  RLVAFFATGDSIVGNNLVLNLYKHVNSPEGRMYLSRQLYEEALHVQFYLTLLDNYIPNPD 122

Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           E    F     +PSI  KA++  ++  +++  +    T +  + FL +L  F    EG++
Sbjct: 123 ERAEAFAAVENIPSIKKKADFCYKWIDSINELT-ELNTIEDRRRFLMNLICFATCVEGLF 181

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  FA +  L     + G+A    ++ RDES+H+ F I+V+   + E P L+ ++ +  
Sbjct: 182 FYAAFAYVYFLRSKGLLAGLASGTNWVFRDESMHMAFAIEVVKTARKEEPELFNQQMEDM 241

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ML +A   E+ +AH+ +  G  GL+A    QY+++ A++R   + + P +   +NPF
Sbjct: 242 VVQMLEDAIECEMEFAHDVLNLGVAGLSAKDMRQYLEYCADQRLESLNIAPRYNV-KNPF 300

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
            +M E+ D+++  NFFE RV+ YQ G    + +D
Sbjct: 301 IFM-ELQDMQELANFFERRVSAYQTGVSGAVAFD 333


>gi|187932511|ref|YP_001884520.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           botulinum B str. Eklund 17B]
 gi|187720664|gb|ACD21885.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 344

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 99/348 (28%), Positives = 167/348 (47%), Gaps = 13/348 (3%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +   KR++N  + ++N    +KY WA + Y    NN W+P E+ +  DL 
Sbjct: 6   KPLFNEFGDRDPRLKRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    L  DER    + L F    +S+   N+   I  +++  E    L  Q+F+EAV
Sbjct: 66  DYK---KLLPDERTAYDKILSFLIFLDSIQTANLS-NINSYITASEINLCLTIQSFQEAV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       K +  L          +     + ++  L
Sbjct: 122 HSQSYSYMLDSICSPEE------RNEILYQWKDDEILLKRNKFIGDLYNEFINNPNEYNL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 176 IKTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            ENP  +T + + + R M+H     EI + H  +     G+N    E Y++++ N+R  +
Sbjct: 236 SENPESFTADLKNELREMMHIGVENEILWGHYVIGDKIQGINKKLIEDYIKYLGNKRLKE 295

Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           IGLEPLF  Y ENP  W+  V +    + +FFE + T Y + + L  D
Sbjct: 296 IGLEPLFSGYEENPATWVDVVANSNSVKTDFFEAKSTAYAKVSTLIDD 343


>gi|83859670|ref|ZP_00953190.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852029|gb|EAP89883.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis
           alexandrii HTCC2633]
          Length = 348

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 143/321 (44%), Gaps = 18/321 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA++ +      HW+P EVP+ +D   W +   LTD ER ++ +   FF  S
Sbjct: 17  TYKPFRYPWAYDFWKVQSQVHWLPEEVPLGEDCKDWAT--KLTDKERNLLTQIFRFFTQS 74

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V  N +          E R  L   +  E +H   +  ++ ++G+ + E F+ + E 
Sbjct: 75  DVEVGANYMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLLETIGMPDTE-FSAFMEY 133

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             + AK ++  ++              + D++ L  + VF    EG+  +  FA +++  
Sbjct: 134 EEMAAKHDYLGKF------------GCETDRDILTSMAVFGGFTEGLQLFASFAMLMNFP 181

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R NKM G+ +   + +RDESLH    + + +    E   L     +            LE
Sbjct: 182 RFNKMKGMGQIVSWSVRDESLHCEGMMKLFHTFAEETGALTKG-VKDDIADCCKTVVSLE 240

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +       G   G+     + Y+++IA+ R  Q+ L  ++   E+P PW++E+++  +
Sbjct: 241 DKFIELAFEAGEVEGMTPEDIKNYIRYIADWRMKQLKLPTIYGVEEHPIPWLTEILNGVE 300

Query: 332 EKNFFETRVTEYQQ-GAELKW 351
             NFFE R TEY +   +  W
Sbjct: 301 HANFFEARATEYSKGATQGDW 321


>gi|331086748|ref|ZP_08335825.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330409914|gb|EGG89349.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 347

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 165/350 (47%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+        V  +R++   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPAGDTEVRLRRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVR 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   L   ER    + L F    +S+   N+   I  +++  E    L  QAF+EAV
Sbjct: 67  DYRT---LPAPERRAYDKILSFLVFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L          +    ++   E  
Sbjct: 123 HSQSYSYMLDTICEP------QERNKVLYQWKDDPHLLSRNEFIGNLYNEFQREKSLEAF 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    +++ +++
Sbjct: 177 VRTMIANYILEGIYFYSGFMFFYNLGRNQKMTGSVQEIRYINRDENTHLWLFTNILRELR 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+++E +++ R M+ E    EIA+ H  +     GL+      Y++++ N RC  
Sbjct: 237 KELPELFSEEKEKEYRQMIREGCEQEIAWGHYVIGDAVSGLSCDMITDYVKYLGNLRCKN 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +GL P+++ + + P    W+S+  +    + +FFE + T Y + + L  D
Sbjct: 297 LGLAPIYEGHEKEPESMGWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 346


>gi|212697417|ref|ZP_03305545.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325846383|ref|ZP_08169352.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|212675609|gb|EEB35216.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325481567|gb|EGC84607.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 352

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 92/356 (25%), Positives = 170/356 (47%), Gaps = 15/356 (4%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
                   I   E  +++  +R++N  + ++N    +KY W  + Y  A NN W+P E+ 
Sbjct: 6   KEEVSKRGIFNEEGDIDLSKRRIINGNTTNLNDFNNVKYTWTNDWYRQAMNNFWIPEEIN 65

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D+  ++    L+  E+    R L F    +S+   N+   +  +++  E    L  Q
Sbjct: 66  LNQDIKDYR---NLSKAEKKAYDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLAIQ 121

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
            ++EA+HS ++ YI+ ++   +       R       K +  L          +    KD
Sbjct: 122 TYQEAIHSQSYSYILDTICSPDE------RTRILYLWKEDEHLLKRNKFIGDQYNEFIKD 175

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             +  L  + +   + EG++FY+GF+   +LGR  KM G  ++ +YI RDE+ HL     
Sbjct: 176 DSEFNLMRVLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRS 235

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +IN +K E P L+T E ++   ++L E    EIA+    +     GLN+   E Y++++ 
Sbjct: 236 MINDLKEERPDLFTDELKEFYLSLLKEGVEQEIAWGKYAIGDEIQGLNSQMIEDYIKYLG 295

Query: 301 NRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           N R   +GL  +++ Y E P    W+SE  D  + + +FFE +V+ Y + + ++ D
Sbjct: 296 NLRAKGLGLGKIYEGYEEEPQSMKWVSEYSDPNQVKTDFFEGKVSAYSKSSVIEDD 351


>gi|325663145|ref|ZP_08151595.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325470599|gb|EGC73829.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 347

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 165/350 (47%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+        V  +R++   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPAGDTEVRLRRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVR 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +++   L   ER    + L F    +S+   N+   I  +++  E    L  QAF+EAV
Sbjct: 67  DYRT---LPAPERRAYDKILSFLVFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L          +    ++   E  
Sbjct: 123 HSQSYSYMLDTICEP------QERNEVLYQWKDDPHLLSRNEFIGNLYNEFQREKSLEAF 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    +++ +++
Sbjct: 177 VRTMIANYILEGIYFYSGFMFFYNLGRNQKMTGSVQEIRYINRDENTHLWLFTNILRELR 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+++E +++ R M+ E    EIA+ H  +     GL+      Y++++ N RC  
Sbjct: 237 KELPELFSEEKEKEYRQMIREGCEQEIAWGHYVIGDAVSGLSCDMITDYVKYLGNLRCKN 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +GL P+++ + + P    W+S+  +    + +FFE + T Y + + L  D
Sbjct: 297 LGLAPIYEGHEKEPESMGWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 346


>gi|15639047|ref|NP_218493.1| ribonucleotide-diphosphate reductase subunit beta [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189025287|ref|YP_001933059.1| ribonucleotide-diphosphate reductase subunit beta [Treponema
           pallidum subsp. pallidum SS14]
 gi|6093976|sp|O83092|RIR2_TREPA RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|3322311|gb|AAC65049.1| ribonucleoside-diphosphate reductase, subunit beta (nrdB)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189017862|gb|ACD70480.1| ribonucleoside-diphosphate reductase, subunit beta [Treponema
           pallidum subsp. pallidum SS14]
 gi|291059468|gb|ADD72203.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           pallidum subsp. pallidum str. Chicago]
          Length = 351

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              +      + +  +RM+   + ++N    +KY W  + Y  A NN W+P E+ M  D+
Sbjct: 10  RRALFNEAGDIELHKRRMVGGNTTNLNDFNNMKYPWVSKWYRQAMNNFWIPEEINMSSDV 69

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    L+  E+    + L F    +S+   N+   I ++++  E    L  QAF+EA
Sbjct: 70  QDYR---NLSAIEKTAYDKILSFLIFLDSIQTANLP-NIGQYITANEINLCLTIQAFQEA 125

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ ++   E       R       K +  L          +     D     
Sbjct: 126 VHSQSYSYMLDTICSPEE------RNDILYQWKDDEHLLARNKFIGNLYNEFQDDKSVLA 179

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L  + +   V EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     +I ++
Sbjct: 180 LLKVAIANYVLEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIQEL 239

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P ++T    +  R M+ E    EI +    +     GLN      Y++++ N RC 
Sbjct: 240 QKEEPQVFTARNVRLFRDMIREGCEQEIKWGDYVIGDQIPGLNRHMVADYIRYLGNLRCE 299

Query: 306 QIGLEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +G EPL++          W+S+  +    + +FFE + T Y + + +  D
Sbjct: 300 NLGFEPLYEGHRVEPESMSWVSQYSNANLIKTDFFEAKSTAYAKSSAMVDD 350


>gi|73666936|ref|YP_302952.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia canis
           str. Jake]
 gi|72394077|gb|AAZ68354.1| Ribonucleoside-diphosphate reductase [Ehrlichia canis str. Jake]
          Length = 324

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 152/321 (47%), Gaps = 14/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF  ++
Sbjct: 10  YKPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +  
Sbjct: 68  IEVNNCYMRHYSNIFKPTEVCMMLAAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  ++ +           K+  +   + L VF    EG+  +  FA +L+  R
Sbjct: 127 VMKKKYDYMQKFEE---------CRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   + +RDE+LH    I + N    EN  +W    + +          LE 
Sbjct: 178 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFVQENYEIWDDSLKHELYEACKIIVSLED 237

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            + +     G   GL+A   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++  + 
Sbjct: 238 EFINLAFACGDVEGLSAKEVKKYIRYIANRRLLQLNLEPIYDANKNPLLWLDEILNGVEH 297

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE RVTEY +   E  W+
Sbjct: 298 TNFFENRVTEYARAATEGTWE 318


>gi|298207002|ref|YP_003715181.1| probable ribonucleoside-diphosphate reductase small chain
           [Croceibacter atlanticus HTCC2559]
 gi|83849636|gb|EAP87504.1| probable ribonucleoside-diphosphate reductase small chain
           [Croceibacter atlanticus HTCC2559]
          Length = 325

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 91/334 (27%), Positives = 156/334 (46%), Gaps = 28/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    +   + P+++   WE Y       W   E+ +  DL  W S   L DDER  
Sbjct: 5   EPILQKNENRFVIFPIQHNDIWEWYKKMEACFWTAEEIDLHQDLTDWNS--KLNDDERYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF      P+I  KA+WAL++ ++ S                 +  + +   EG
Sbjct: 123 EAEKDQLFRAIEVFPAIKKKADWALKWIESDS---------------FAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   F  I  L +   M G+    + I RDE +H +F + +       N HL  K  +
Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLH------NKHLVNKVSK 221

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R ++ +A  +E  +  E++P   +G+N+    QY++F+ +R   ++  E  +  T N
Sbjct: 222 ERIREIIVDALNIEREFITESLPASLIGMNSNLMTQYLEFVTDRLLLELECEKEYN-TAN 280

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M  +I L+ + NFFE RV +YQ+   +  D
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGDYQKAGVMDQD 313


>gi|329847182|ref|ZP_08262210.1| ribonucleotide reductase, small chain family protein [Asticcacaulis
           biprosthecum C19]
 gi|328842245|gb|EGF91814.1| ribonucleotide reductase, small chain family protein [Asticcacaulis
           biprosthecum C19]
          Length = 352

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 141/321 (43%), Gaps = 19/321 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P +Y WA+E +      HW+P EVP+ +D   W S   L+D ER ++ +   FF  S+
Sbjct: 21  YKPFRYPWAFEYWRKQQQVHWIPEEVPLGEDCKDWAS--KLSDSERNLLTQIFRFFTQSD 78

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V +N +    R     E +  L   A  E +H   +  ++ ++G+ E E F  + +  
Sbjct: 79  IEVQDNYLERYGRVFKPTEIKMMLSAFANMETIHIAAYALLLETIGMPESE-FGAFMDYE 137

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++  K ++              T   D + + L+ L +F    EG+  +  FA +++  R
Sbjct: 138 AMRDKHDFMG------------TFGVDTEADVLRTLAMFGGFTEGLQLFASFAMLMNFPR 185

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDESLH    I + +    E     TK  Q            +E 
Sbjct: 186 FNKMKGMGQIVSWSVRDESLHCEGIIKLYHAFAKETKA-LTKSVQDDIIDCCKTVVTMED 244

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK 331
            +       G   G+     + Y+++IA+ R  Q+ L  ++    ENP PW+  ++   +
Sbjct: 245 KFIDLAFEMGPVQGMTPDDIKAYIRYIADWRLRQLNLPEVYGGVKENPLPWLQVLLSGVE 304

Query: 332 EKNFFETRVTEYQQ-GAELKW 351
             NFFE R TEY +     +W
Sbjct: 305 HANFFEARATEYSKAATTGQW 325


>gi|73974200|ref|XP_858061.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53
           inducible) isoform 3 [Canis familiaris]
          Length = 338

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/339 (28%), Positives = 152/339 (44%), Gaps = 41/339 (12%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E  V  D++ +L   S    + P++Y   W+ Y  A  + W   EV +  DL  W   N 
Sbjct: 24  ENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +   Q   E VHS  +  
Sbjct: 81  LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           +I +   D  +   LFN    +P +  KA+WAL++ +               +    +  
Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIE-------------DRKSTFGERV 187

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +     
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 244

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
               K  +++ R ++  A  +E  +  E +P G +G+N    +QY++F+           
Sbjct: 245 ----KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVF---------- 290

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
                 ENPF +M E I L+ + NFFE RV EYQ+ A +
Sbjct: 291 ----QAENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 324


>gi|302386033|ref|YP_003821855.1| ribonucleotide reductase [Clostridium saccharolyticum WM1]
 gi|302196661|gb|ADL04232.1| ribonucleotide reductase [Clostridium saccharolyticum WM1]
          Length = 368

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 162/349 (46%), Gaps = 15/349 (4%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   +    V  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D   
Sbjct: 29  PLFHPDGETEVRKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLSRDRKD 88

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +     L+  ER    + L F    +S+   N+  A+  +++  E    L  Q F+EAVH
Sbjct: 89  Y---PLLSPQERRAYDKILSFLVFLDSIQTANLP-ALGEYVTANEINLCLSIQTFQEAVH 144

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ ++           R       K++  L    T     +    KD       
Sbjct: 145 SQSYSYMLDTICEP------QTRNDVLYQWKSDPRLLARNTFIGDLYNEFQKDKSPYAFM 198

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
              V   + EG++FY+GF    +LGR +KM G +++ +YI RDE+ HL    ++I +++ 
Sbjct: 199 KTVVANFILEGVYFYSGFMFFYNLGRNHKMTGSSQEIRYINRDENTHLWLFRNIILELEK 258

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P L+++E  +  RTM+ E    EIA+    +     GL       Y+ ++ N RC  +
Sbjct: 259 EEPKLFSRERIEVYRTMIKEGCEQEIAWGCYAIGDEVPGLTKEMITDYIMYLGNLRCASL 318

Query: 308 GLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           G   +++ + + P    W+++  +    + +FFE + T Y + + L  D
Sbjct: 319 GWGRIYEGHDKEPESMSWVNQFSNANLIKTDFFEAKSTAYAKSSALLDD 367


>gi|311898297|dbj|BAJ30705.1| putative ribonucleoside-diphosphate reductase subunit beta
           [Kitasatospora setae KM-6054]
          Length = 339

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 104/338 (30%), Positives = 184/338 (54%), Gaps = 12/338 (3%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
             K +L+   ++  L P++Y   +++Y  A  N W   EV +  D+A       L++ ER
Sbjct: 6   RKKMLLDPGFEL-TLRPMRYPSFYDRYRDAIKNTWTVEEVDLHSDVAD---LAKLSEGER 61

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            MI R + FFA+ +S+V+NN+VL++Y+H+++PE R YL RQ FEEAVH   +  ++ +  
Sbjct: 62  HMIGRLVAFFATGDSIVSNNVVLSLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYL 121

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  +    F     +PSI  KA +  +Y   +     +  +K+  + FL +L  F    
Sbjct: 122 PDPEDRNAAFAAVENIPSIAQKAQFCFKYMNAVDHID-SLRSKEDRRAFLLNLICFAACV 180

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++FY  FA +        + G+A    ++ RDES+H++F   V++ ++ E P L+  +
Sbjct: 181 EGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDESMHMDFAFSVVDTVREEEPDLFDDK 240

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             ++   ML EA   E+ +A +   +G  G+N  S  +Y+Q +A++R  ++GL   +  +
Sbjct: 241 MARQVTEMLEEAVEAELQFARDLCGEGLPGMNTESMREYLQAVADQRLARLGLPIRYG-S 299

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
            NPF +M E+ ++++  NFFE RV+ YQ      + +D
Sbjct: 300 TNPFGFM-ELQNVQELTNFFERRVSAYQIAVEGSVSFD 336


>gi|256545921|ref|ZP_05473276.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398343|gb|EEU11965.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
           vaginalis ATCC 51170]
          Length = 352

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 91/356 (25%), Positives = 170/356 (47%), Gaps = 15/356 (4%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
                   I   E  +++  +R++N  + ++N    +KY W  + Y  A NN W+P E+ 
Sbjct: 6   KEEVSKRGIFNEEGDIDLSKRRIINGNTTNLNDFNNVKYTWTSDWYRQAMNNFWIPEEIN 65

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D+  ++    L+  E+    R L F    +S+   N+   +  +++  E    L  Q
Sbjct: 66  LNQDIKDYR---NLSKAEKKAYDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLAIQ 121

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
            ++EA+HS ++ YI+ ++   +       R       K +  L          +    KD
Sbjct: 122 TYQEAIHSQSYSYILDTICSPDE------RTRILYLWKEDDHLLKRNKFIGDQYNEFIKD 175

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             +  L  + +   + EG++FY+GF+   +LGR  KM G  ++ +YI RDE+ HL     
Sbjct: 176 DSEFNLMRVLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRS 235

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +IN +K E P L+T E ++   ++L E    EIA+    +     GLN+   E Y++++ 
Sbjct: 236 MINDLKEERPDLFTDELKEFYLSLLKEGVEQEIAWGKYAIGDEIQGLNSQMIEDYIKYLG 295

Query: 301 NRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           N R   +GL  +++ Y + P    W+SE  D  + + +FFE +V+ Y + + ++ D
Sbjct: 296 NLRAKGLGLGTIYEGYEDEPQSMKWVSEYSDPNQVKTDFFEGKVSAYSKSSVIEDD 351


>gi|218289144|ref|ZP_03493380.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240727|gb|EED07906.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 345

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 96/349 (27%), Positives = 165/349 (47%), Gaps = 13/349 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            + +   E   +   +R++   + ++ +L  +KY WA++ Y +  NN W+P E+P+ DD 
Sbjct: 5   RTRLFNAEGDRDWGKRRIIGGNTTNMIELNNIKYEWAYKLYRAMMNNFWIPEEIPLADDA 64

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +   + L+DDER    + L F    +SL+ +N+   I  +++ PE    L   AF+EA
Sbjct: 65  RQY---DLLSDDERRSYNKVLSFLIFMDSLLTHNLP-NINEYITAPEVNLCLTVHAFQEA 120

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ S+           R+      + +  L       +  F    ++     
Sbjct: 121 VHSQSYGYVLDSVVNP------ATRDQIYNEWRNDDHLLRRNQFITDLFEEFIENPTDRN 174

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V   + EG++FY GF     LGR  KM+G   + ++I RDE  HL    ++ ++I
Sbjct: 175 LMKTIVANYILEGVYFYAGFGFFFVLGRQGKMLGTVSEIKFIQRDELTHLAIFRNLYHEI 234

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
             ENP + T + +++   M+  A   EIA+         VGL     + Y++++AN R  
Sbjct: 235 VRENPGIVTPDMEEEFVEMMRTAVQHEIAWGQYVTQGKIVGLTDALIDAYIKYLANLRLQ 294

Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            + L  L+    E+P PWM     +     +FFE RVT Y +   L WD
Sbjct: 295 SLNLPILYPEIKEHPMPWMDSFAAINSHKTDFFEQRVTNYTKAGNLNWD 343


>gi|254517517|ref|ZP_05129573.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp.
           7_2_43FAA]
 gi|226911266|gb|EEH96467.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp.
           7_2_43FAA]
          Length = 344

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 165/348 (47%), Gaps = 13/348 (3%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+           KRM+N  + ++N    +KY W  + Y  A NN W+P E+ +  DL 
Sbjct: 6   KPLFNEFGDTETSKKRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLAQDLK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +   N LT+DER    + L F    +S+   N+   I  +++  E    L  QAF+EAV
Sbjct: 66  DY---NKLTNDERTAYDKILSFLIFLDSIQTANLS-NINNYITASEVNLCLTIQAFQEAV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R       K +  L          +    +   QE L
Sbjct: 122 HSQSYSYMLDTICSPEK------RNEILYQWKDDKILLERNKFIGELYNNFLEAPTQENL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    +++ +++
Sbjct: 176 IKTIMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNILKELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
           +E P ++T E + + + M+  A   EI++ +  +     G+N      Y++++ N R   
Sbjct: 236 LEQPEIFTDEVKNQLKEMMKTAVEHEISWGNYVIGDNIQGINKNLINDYIKYLGNLRMKA 295

Query: 307 IGLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           IGL+ +++ +  NP  W+  + D    + +FFE + T Y +   L  D
Sbjct: 296 IGLDAIYEGHDNNPAAWVDILSDANSVKTDFFEAKSTAYAKAGALIDD 343


>gi|11544904|emb|CAC17630.1| class I ribonucleotide-diphosphate reductase small subunit chain
           [Streptomyces jumonjinensis]
          Length = 322

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 99/311 (31%), Positives = 167/311 (53%), Gaps = 9/311 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   +E+Y  A  N W   EV +  D+        LT  E+ +I R + FFA+ 
Sbjct: 18  TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVTD---LAKLTPGEQHLIGRLVAFFATG 74

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +   D  +    F   
Sbjct: 75  DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAV 134

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             +PSI  KA +  ++  ++        T+   + FL +L  F    EG++FY  FA + 
Sbjct: 135 ENIPSIREKAQFCFKWMDSVEKID-QLETQADRRRFLLNLICFAACIEGLFFYGAFAYVY 193

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDE++H+NF  +V++ ++ E P L+    QQ+   ML EA 
Sbjct: 194 WFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLQEAV 253

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +  +    G  G+N  S  +Y+Q +A++R  ++G  P++  +ENPF +M E+  +
Sbjct: 254 EAELQFGSDLCGDGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SENPFSFM-ELQGV 311

Query: 330 KKEKNFFETRV 340
           ++  NFFE R 
Sbjct: 312 QELTNFFERRP 322


>gi|150015087|ref|YP_001307341.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901552|gb|ABR32385.1| Ribonucleoside-diphosphate reductase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 344

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 166/348 (47%), Gaps = 13/348 (3%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+        +  KR++N  + ++N    +KY W  + Y    NN W+P EV +  DL 
Sbjct: 6   KPLFNELGDREISKKRIINGNTTNLNDFNNMKYSWVSDWYRQGMNNFWIPEEVNLSQDLK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L ++ER+   + L F    +S+   N+   I  +++  E    L  Q+F+EAV
Sbjct: 66  DYQ---NLLEEERIAYDKILSFLIFLDSIQTANLS-NINNYITASEINLCLTIQSFQEAV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       K +  L          +    ++  +  L
Sbjct: 122 HSQSYSYMLDSICSPEK------RNEILYQWKDDDILLKRNKFIGDLYNEFIENPTEYNL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 176 LRTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            ENP L+T+E + + R M+      EI + H  +     G+N    E Y++++ N+R  +
Sbjct: 236 NENPELFTEEVKNELRNMMKIGVEQEILWGHYVIGDKIQGINKQLIENYIKYLGNKRLKE 295

Query: 307 IGLEPLFKY-TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           I L PLFK   +NP  W+  + +    + +FFE R T Y +   L  D
Sbjct: 296 INLSPLFKEQDKNPASWVDTLSNANSVKTDFFEARSTAYAKVTTLIDD 343


>gi|161760549|ref|NP_906664.2| ribonucleotide-diphosphate reductase subunit beta [Wolinella
           succinogenes DSM 1740]
          Length = 341

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 173/348 (49%), Gaps = 14/348 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I   +    V+++++       + +L  +KY WA+  +     N W P EV M  D 
Sbjct: 4   RKKIYNPQSTETVNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTPDK 63

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +    GLT  E+L   R L      +SL  NN++  +  ++++PE    L+RQAFEEA
Sbjct: 64  RDYN--GGLTPAEKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEA 121

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +HS ++  ++ S+  +  E++ M+R    + +K +      + L+        K+     
Sbjct: 122 LHSQSYAVMVESISANTDEIYEMWRVDMQLKSKNDHIAGVYEELA--------KNPTDSA 173

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           +        + EG++FY GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 174 MLKAMFANQILEGIYFYAGFSFFYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQNMINAL 233

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P L+TK  +++   M  +A  +E A+         +GL +    +Y+Q++A+ R  
Sbjct: 234 KKERPDLFTKSLEEEVVEMFRKAVAVESAWGDYITQGQILGLTSEIIHEYIQYLADDRLK 293

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           ++G+  L+   ++P  W+ +     + + NFFE  VT Y +G+ + +D
Sbjct: 294 RVGMPILYN-AKHPIKWVDQFSSFNEQKTNFFEGNVTNYAKGS-INFD 339


>gi|167648664|ref|YP_001686327.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter sp.
           K31]
 gi|167351094|gb|ABZ73829.1| Ribonucleoside-diphosphate reductase [Caulobacter sp. K31]
          Length = 346

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 142/320 (44%), Gaps = 18/320 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P +Y WA E +      HWMP EVP+ +DL  W     L D ER ++ +   FF  S+
Sbjct: 18  YKPFRYPWAHEFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSD 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             VA+N +    R     E +  L   A  E +H   +  ++ ++G+ E E F  + +  
Sbjct: 76  IEVADNYMERYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMQYQ 134

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           ++  K ++  ++              + + +  + L +F    EG+  +  FA +++  R
Sbjct: 135 AMRDKHDFMQKF------------GVETNADIARTLAMFGGFTEGLQLFASFAMLMNFPR 182

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            NKM G+ +   + +RDESLH    I + +    E     T E             ++E 
Sbjct: 183 FNKMKGMGQIVSWSIRDESLHCEGIIKLYHAFNAETK-CVTPEVAADIVECCKSVVIMED 241

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           A+       G   G+     +QY++FIA+ R  Q+ L  ++   ENP PW+  ++   + 
Sbjct: 242 AFIDLAFEAGEIQGMTPHDIKQYIRFIADWRLRQLHLPEVYGIKENPLPWLQSLLSGVEH 301

Query: 333 KNFFETRVTEYQQ-GAELKW 351
            NFFE R TEY +     +W
Sbjct: 302 ANFFEARATEYSKAATTGQW 321


>gi|103487260|ref|YP_616821.1| ribonucleotide-diphosphate reductase subunit beta [Sphingopyxis
           alaskensis RB2256]
 gi|98977337|gb|ABF53488.1| Ribonucleoside-diphosphate reductase [Sphingopyxis alaskensis
           RB2256]
          Length = 354

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/323 (25%), Positives = 152/323 (47%), Gaps = 18/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y WA++ +      HW+P EVP+ +D   W     ++D ER ++ +   FF 
Sbjct: 7   RKTYKPFEYPWAFDFWKRQQQIHWVPEEVPLGEDCRDWAQ--KISDHERNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V +       R     E +  L   +  E VH   + +++ ++G+ E E + M+ 
Sbjct: 65  QADIEVQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGMFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   + AK ++  Q+              + D++  + L +F    EG+  +  FA +++
Sbjct: 124 EYDEMRAKHDYMQQF------------GVETDEDIARTLAMFGGFTEGLQLFASFAMLMN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   + +RDESLH    I + +    E     TK  ++       +   
Sbjct: 172 FPRFNKMKGMGQIVSWSIRDESLHCEGIIKLFHAFTKER-GCLTKAVKEDIIDTCQKTVR 230

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE A+      +G   G+     ++Y+++IA+ R  Q+G +P++   E+P PW++ +++ 
Sbjct: 231 LEDAFIDLAFEQGPVPGMTPKEIKRYIRYIADWRLGQLGFQPIYMIDEHPLPWLAPLLNG 290

Query: 330 KKEKNFFETRVTEYQQGAE-LKW 351
            +  NFFETR TEY +GA    W
Sbjct: 291 VEHANFFETRATEYSKGATRGDW 313


>gi|269865926|ref|XP_002652096.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063168|gb|EED41960.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 330

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 90/328 (27%), Positives = 148/328 (45%), Gaps = 31/328 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEVYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +L  D
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LFN    +PSI  KA WA ++  + +S                   V +   EG
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFD--------------TRCVAFACVEG 188

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   I  +          
Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNK---------C 239

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G + ++  + N
Sbjct: 240 TVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-N 298

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           PF +M E I L+ + NFFE R   YQ+G
Sbjct: 299 PFDFM-ENISLQGKTNFFERREANYQKG 325


>gi|224007863|ref|XP_002292891.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220971753|gb|EED90087.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 297

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/313 (27%), Positives = 143/313 (45%), Gaps = 30/313 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   E+ + +DL  W   + LT +ER  +   L FFA+S+ +V  N+    
Sbjct: 1   MYKKAEASFWTAEEIDLAEDLKDW---DALTANERHFVSHILAFFAASDGIVNENLTGNF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
              +++PE R +   Q   E +HS T+  +I +   D  E   L N    VP +  KA+W
Sbjct: 58  STEVTSPEARCFYGFQIAVENIHSETYSLLIDTYIKDSTEKNHLLNAIETVPCVQKKAHW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL++                +  F + +  F  V EG++F   F  I  L +   M G+ 
Sbjct: 118 ALKWCDA------------GNASFAERMIAFAAV-EGIFFSGSFCAIFWLKKRGLMPGLC 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   + +++  + P       + +   ++  A  +E  +  + +P
Sbjct: 165 FSNELISRDEGLHCDFACLLYSKLVNKLP-------ESRITKIITVAVEIEKEFVSDALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
              +G+N+     Y++F A+R    +G    +  T NPF WM E+I L+ + NFFE RV 
Sbjct: 218 VELIGMNSKLMCDYIEFCADRLLGALGCSKFYNAT-NPFEWM-EMISLQGKTNFFEKRVG 275

Query: 342 EYQQGAEL--KWD 352
           EY +      K D
Sbjct: 276 EYAKSGVGVNKDD 288


>gi|88658048|ref|YP_507564.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
           chaffeensis str. Arkansas]
 gi|88599505|gb|ABD44974.1| ribonucleoside-diphosphate reductase, beta subunit [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 324

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 153/321 (47%), Gaps = 14/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA++ +L     HW+P EVP+ DD+  WK+   L++ E+ ++ +   FF  ++
Sbjct: 10  YKPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +  
Sbjct: 68  IEVNNCYMKHYSNIFKPTEVCMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  ++ +           K+  +   + L VF    EG+  +  FA +L+  R
Sbjct: 127 VMKKKYDYMQRFEE---------CRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   + +RDE+LH    I + N    EN  +W    +Q+          LE 
Sbjct: 178 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDSLKQELYEACRIIVSLED 237

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            + +     G   GL++   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++  + 
Sbjct: 238 EFINLAFACGDVEGLSSKEVKEYIRYIANRRLLQLNLEPIYDTNKNPLLWLDEILNGVEH 297

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE RVTEY +   E  W+
Sbjct: 298 TNFFENRVTEYARAATEGTWE 318


>gi|19074323|ref|NP_585829.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon
           cuniculi GB-M1]
 gi|51701822|sp|Q8SRR2|RIR2_ENCCU RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|19068965|emb|CAD25433.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon
           cuniculi GB-M1]
          Length = 325

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 90/330 (27%), Positives = 156/330 (47%), Gaps = 30/330 (9%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           + + +L+ + +   LLP+KY   W+ Y  A ++ W   EV +  D+  W     L   ER
Sbjct: 6   ETELLLDPKEERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDW---GKLNAKER 62

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L FFA+S+ +V  N+V      +   E R +   Q   E +HS  +  +I +  
Sbjct: 63  HFISYVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGFQMAIENIHSEMYSLLIDTYI 122

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LF+  R +PS+  KA+WA+++ +            D + +F   L   +   
Sbjct: 123 RDNDEKNFLFDAIRTIPSVKEKADWAIRWIE------------DKNSDFATRLVA-FACV 169

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   FA I  L +   M G+    + I RDE LH  F   +   +K +        
Sbjct: 170 EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLHYHLKKK-------- 221

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
              + + ++ +A  +E  +  E++P   +G+N     +Y++F+A+R    +G E ++  T
Sbjct: 222 -CNRIKEVVMDAVEIEKKFLSESLPVNLIGMNCNLMCRYIEFVADRLLENLGEERVYNAT 280

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
            NPF +M E I L  + NFF+ R ++YQ+ 
Sbjct: 281 -NPFDFM-ENISLVGKTNFFDKRESQYQKA 308


>gi|66475262|ref|XP_627447.1| ribonucleotide reductase small subunit, duplicated adjacent gene
           [Cryptosporidium parvum Iowa II]
 gi|9652154|gb|AAF91416.1|AF275635_1 ribonucleotide reductase R2 subunit [Cryptosporidium parvum]
 gi|46228920|gb|EAK89769.1| ribonucleotide reductase small subunit, duplicated adjacent gene
           [Cryptosporidium parvum Iowa II]
          Length = 352

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 92/352 (26%), Positives = 159/352 (45%), Gaps = 32/352 (9%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
            +   +  +   E ++N  ++ ML  +R + N+L  L     W  Y  A  + W+  E+ 
Sbjct: 15  KDEENIEKLVN-EVKINQVNEPMLKYSRENRNELKELI-KDIWSMYKKAEASFWVTEEID 72

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D   W+S   L D ER  IK  L FFA+S+ +V  N+ +   R +  PE R Y   Q
Sbjct: 73  LSQDTRDWES---LKDPERHFIKYVLAFFAASDGIVMENLAVNFLREIQIPEARMYYAFQ 129

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS T+  +I     +  E   LF     + ++  KA WA ++  +  S      
Sbjct: 130 MSIEQIHSETYSLLIDRYITEIKERQMLFEAISHIEAVKKKAEWATKWMNSERS------ 183

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                     +  + +   EG+ F   F  I  L +   M G+    + I RDE LH +F
Sbjct: 184 --------FAERIIGFCAVEGILFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHADF 235

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +   +K + P         + + ++ EA  +E  +  +++P   +G+N+    QY++
Sbjct: 236 ACLIYKALKFKLPAP-------RVQQIISEAVEVERNFLCDSLPVDLIGMNSRLMAQYIE 288

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           F+A+R    + +  ++  + NPF WM  +I L+ + NFFE RV EYQ    +
Sbjct: 289 FVADRLLFALDIPKIYNVS-NPFDWMD-LISLQGKTNFFEKRVGEYQMAGVM 338


>gi|330814259|ref|YP_004358498.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487354|gb|AEA81759.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 345

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 81/334 (24%), Positives = 153/334 (45%), Gaps = 20/334 (5%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +++ +L  +       P +Y W ++ +L+    HW+P EVP+ +D+  W+    L   E+
Sbjct: 22  EEEGLLKEK---IVYKPFRYPWCYDAWLTQQRIHWLPEEVPLAEDVRDWQK--KLLPHEK 76

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            ++ +   FF  ++  V N  +          E    +   A  E VH   + +++ ++G
Sbjct: 77  NLLTQIFRFFTQADVEVNNCYLRHYTTVFKPTEVLMMMTAFASMETVHVAAYSHLLDTIG 136

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
           + E E ++ + +   +  K ++   +                 +E  + + VF    EG+
Sbjct: 137 MPETE-YSAFLKYKEMKDKYDYMQNFNMG------------DKREIAKTVAVFSAFTEGL 183

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
             +  FA +L+  R NKM G+ +   + +RDE+LH N  I + N    ENP L     ++
Sbjct: 184 QLFASFAILLNFPRFNKMKGMGQIVTWSVRDETLHCNSMIKIFNTFCDENPGLLDDSLKK 243

Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           +           E A+       G   GL A   ++Y+++IANRR  Q+ L  L++  EN
Sbjct: 244 EIYEACSTIIEHEDAFIDLAFEMGDIEGLKAEEVKKYIRWIANRRLAQLRLNDLYEVKEN 303

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKW 351
           P  W+ ++++  +  NFFE R TEY + + +  W
Sbjct: 304 PLTWLDDMLNGVEHMNFFEGRATEYSKASTKGSW 337


>gi|154505112|ref|ZP_02041850.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149]
 gi|153794591|gb|EDN77011.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149]
          Length = 347

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       ++  +RM+   + ++N    L+Y W    Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPGGDTDIRLRRMIGGNTTNLNDFNNLRYTWVNNWYRQAMNNFWIPEEINLSQDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     LT++ER    + L F    +S+   N+   I  +++  E    L  Q F+E V
Sbjct: 67  DY---PNLTENERTAYNKILSFLVFLDSIQTANLP-CIGEYITANEINLCLSIQTFQECV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+         + R       K +  L    T     +    +  D   L
Sbjct: 123 HSQSYSYMLDSICSP------VERNDILYQWKNDAHLLRRNTFIGDLYNEFQEKKDDFTL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K
Sbjct: 177 LKVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILEMK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  +  + ML E    EIA+ H  +     GL      +Y+Q++ N R   
Sbjct: 237 KELPELFTPEHIEILKEMLKEGVRQEIAWGHYVIGNQIAGLTKEMITEYIQYLGNLRFTN 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G +P++   T+ P    W+S+  +    + +FFE + T Y +   L  D
Sbjct: 297 LGFDPIYPDQTQEPDSMRWVSQYSNANMVKTDFFEAKSTAYAKSTALIDD 346


>gi|269863618|ref|XP_002651286.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220064807|gb|EED42770.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 332

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 90/328 (27%), Positives = 148/328 (45%), Gaps = 31/328 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +L  D
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LFN    +PSI  KA WA ++  + +S                   V +   EG
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFD--------------TRCVAFACVEG 188

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   I  +          
Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNK---------C 239

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G + ++  + N
Sbjct: 240 TVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-N 298

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           PF +M E I L+ + NFFE R   YQ+G
Sbjct: 299 PFDFM-ENISLQGKTNFFERREANYQKG 325


>gi|10344|emb|CAA26307.1| unnamed protein product [Spisula solidissima]
          Length = 300

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 28/309 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  D+A W+S   L  +E+  I   L FFA+S+ +V  N+V   
Sbjct: 1   MYKKAEASFWTAEEVDLSKDMAHWES---LKKEEKHFISHVLAFFAASDGIVNENLVERF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
            + +   E R +   Q   E +HS  +  +I +   D  E   LFN    +P +  KA+W
Sbjct: 58  SKEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           A+++                D     +  V +   EG++F   FA I  L +   M G+ 
Sbjct: 118 AMRWIN-------------DDSSSYAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLT 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   + + +         K  Q++   ++ EA  +E  +  E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFSHLVN-------KPSQERIHQIIDEAVKIEQVFLTEALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
              +G+N     QY++F+A+R   ++  + L+   ENPF +M   I L+ + NFFE RV 
Sbjct: 218 CRLIGMNCDLMRQYIEFVADRLLLELKCDKLYN-KENPFDFMEH-ISLEGKTNFFEKRVG 275

Query: 342 EYQQGAELK 350
           EYQ+   + 
Sbjct: 276 EYQKMGVMS 284


>gi|289449785|ref|YP_003474451.1| ribonucleoside-diphosphate reductase subunit beta [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184332|gb|ADC90757.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 400

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +  + +D K+M+     ++N    +KY W  + Y    NN W+P E+ M  D+  +
Sbjct: 62  LFNEKGDIGLDKKKMIGGNPTNLNDFNNVKYKWVSDIYRQMMNNFWIPEEINMSTDVQQY 121

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           ++   L   ER    + L F    +SL  NN V  I ++++  E    L  QAF+EAVHS
Sbjct: 122 RT---LPVAERRAYDKILSFLVFLDSLQTNN-VPFIAQYITANEAVLCLTIQAFQEAVHS 177

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ ++   +       R       + +  L          F     D  +  L  
Sbjct: 178 QSYSYMLDTICSPDE------RTEILYQWRDDEHLLARNKFIGDLFMAFQNDQSERNLMR 231

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           + V   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    ++++++++E
Sbjct: 232 VLVANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFRNILSELQVE 291

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L++ E  ++ R M+ E    EIA+ H  +     GL       Y+Q++AN R   +G
Sbjct: 292 RPDLFSAELVEEYRAMIKEGAEQEIAWGHYVLGDDIPGLTRQMVTDYIQYLANLRAQNLG 351

Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
              ++      P    W+S+  D    + +FFE + T Y +   +  D
Sbjct: 352 FAYIYPDNHSEPASMSWISQYSDANMVKTDFFEAKSTAYAKSTAMIDD 399


>gi|229495919|ref|ZP_04389645.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317232|gb|EEN83139.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas
           endodontalis ATCC 35406]
          Length = 346

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 86/350 (24%), Positives = 160/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +      + +  +R++N  + ++N    +KY W    Y +A NN W+P E+ +  D+ 
Sbjct: 6   KALFNEHGDIELSKRRLINGNTTNLNDFNNIKYPWVSNWYRTAMNNFWIPEEINLSQDVK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L+  E+    + L F    +S+   N+   +  +++  E    L  QAF+EAV
Sbjct: 66  DYR---ILSKAEKTAYDKILSFLIFLDSIQTANLP-NVGEYITANEVNLCLTIQAFQEAV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R       + +  L          +         + L
Sbjct: 122 HSQSYSYMLDTICSPEE------RTSILYQWRDDEHLLRRNKFIGDIYNDFQLHKTPDQL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I +++
Sbjct: 176 ARTMVANYILEGVYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILELR 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E + +   M+ E  L EIA+    +     GL +     Y+ ++AN R   
Sbjct: 236 REQPELFTPEREAEFLEMIREGALQEIAWGKYVIGDEIEGLTSQMVSDYIMYLANLRSAN 295

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +GL  +F  + E P    W+S+  +    + +FFE + + Y + A ++ D
Sbjct: 296 LGLGVIFPGHEEEPASMSWVSQYSNSNLIKTDFFEAKPSAYAKSASIEDD 345


>gi|326386063|ref|ZP_08207687.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209288|gb|EGD60081.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 351

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 81/323 (25%), Positives = 151/323 (46%), Gaps = 18/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y WA+E +      HWMP EVP+ +D   W     ++D ER ++ +   FF 
Sbjct: 7   RKTYKPFEYPWAYEFWKRQQQVHWMPEEVPLGEDCRDWAQ--KISDHERNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V +       R     E +  L   +  E +H   + +++ ++G+ E E + M+ 
Sbjct: 65  QADVEVQDCYHEKYGRVFKPTEVKMMLAAFSNMETIHIAAYSHLLDTIGMPESE-YGMFL 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   + AK ++   +              D+D++  + L +F    EG+  +  FA +++
Sbjct: 124 EYEEMKAKHDYMQLF------------GVDSDEDIARTLAMFGGFTEGLQLFASFAMLMN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   + +RDE+LH      +      E     TK  ++       +   
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDETLHCEGITRLFQAFVQERD-CMTKAVREDIIDCCQKTVR 230

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           LE A+      +G   G++A   ++Y+++IA+ R  Q+G +P++   E+P PW++ +++ 
Sbjct: 231 LEDAFIDLAFEQGPVPGMSAKEIKRYIRYIADWRLGQLGFQPIYMIEEHPLPWLTPLLNG 290

Query: 330 KKEKNFFETRVTEYQQGAE-LKW 351
            +  NFFETR TEY + A    W
Sbjct: 291 VEHANFFETRATEYSKAATRGNW 313


>gi|149916691|ref|ZP_01905193.1| putative ribonucleoside-diphosphate reductase beta chain
           [Plesiocystis pacifica SIR-1]
 gi|149822408|gb|EDM81797.1| putative ribonucleoside-diphosphate reductase beta chain
           [Plesiocystis pacifica SIR-1]
          Length = 356

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 104/342 (30%), Positives = 174/342 (50%), Gaps = 9/342 (2%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
              V     R+L+  + +  L P+ Y   + +Y  A  N W   EV    DL     +  
Sbjct: 16  TADVIARPPRLLDPGTCL-TLRPMAYPDFYAQYRQAIRNTWTVEEVDFSTDLRDLAER-- 72

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           +   ER +I+R + FFA+ +S+VANN+VL++YRHL+ PE R YL RQ +EEA+H   +  
Sbjct: 73  MGPAERHLIQRLVAFFATGDSIVANNLVLSLYRHLNAPEARMYLSRQLYEEALHVQFYLT 132

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           ++ +   D  +    F     +PSI  KA + L++  T+++           ++FL +L 
Sbjct: 133 LLDTYVPDPDQRHAAFAAVETIPSIRRKAEFCLRWQDTVAAIP-RLDGPAHRRQFLLNLI 191

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
            F    EG++FY  FA +  L     + G+A    ++ RDES H+ F   VI+ ++ + P
Sbjct: 192 CFAACTEGLFFYGAFAYVYFLRSRGLLHGLAAGTNWVFRDESAHMAFAFSVIDVVRDQEP 251

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L+  E +     M+ EA   E+A+A + +  G  GL       Y+++ A++R  ++G+ 
Sbjct: 252 ELFDAELEAAVVEMIEEAVACEVAFAEDLLGLGVAGLTVADLRAYLEYCADQRLQRLGMA 311

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +  + NP  +M E+ D+ +  NFFE RV+ YQ G     D
Sbjct: 312 TRYG-STNPLSFM-ELQDIPELANFFERRVSAYQHGVSGTID 351


>gi|84998662|ref|XP_954052.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate
           reductase small chain [Theileria annulata]
 gi|65305050|emb|CAI73375.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate
           reductase small chain, putative [Theileria annulata]
          Length = 322

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 86/315 (27%), Positives = 151/315 (47%), Gaps = 15/315 (4%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+ Y   WE Y  A  + W   E+    D   W     L  DER 
Sbjct: 16  EEFILNRNPNRTCLFPIVYPDFWEWYKKAQASFWTAEEIDFSMDYNHWH---KLNKDERH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+ L   R +  PE + +   Q   E +HS T+  +I +   
Sbjct: 73  FITNVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETYSLLIENYVK 132

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E   LF     + ++  KANWA ++    +S +    +   ++       V Y   E
Sbjct: 133 DEAEKRRLFMAIETIDAVKDKANWAKKWITDENSFAERIVSNFKNKLINYYRIVAYAAVE 192

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ F   F  +  L +   M G+    + I RDE LH +FG  + + +K + P       
Sbjct: 193 GILFSGSFCALFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYHNLKHKLP------- 245

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++  + ++ EA ++E +Y  +++P   +G+N+    QY++F+A+R    +G+ P++  T 
Sbjct: 246 EEAVQQIIKEAVVVERSYICDSLPCDLIGMNSQLMTQYIEFVADRLLQSLGVRPVYNVT- 304

Query: 318 NPFPWMSEVIDLKKE 332
           NPF WM ++I ++ +
Sbjct: 305 NPFDWM-QLISVQVK 318


>gi|17158292|ref|NP_477710.1| wsv188 [Shrimp white spot syndrome virus]
 gi|14189948|gb|AAK55515.1|AF267731_1 ribonucleotide reductase small subunit [shrimp white spot syndrome
           virus]
 gi|15021490|gb|AAK77767.1|AF369029_98 ORF98, putative ribonucleotide reductase small subunit (RR2)
           [shrimp white spot syndrome virus]
 gi|17016586|gb|AAL33192.1| wsv188 [shrimp white spot syndrome virus]
 gi|19481835|gb|AAL89111.1| WSSV243 [shrimp white spot syndrome virus]
          Length = 413

 Score =  230 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 89/336 (26%), Positives = 156/336 (46%), Gaps = 28/336 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           V+     +     +     P+ +   WE Y       W   E+  + D   W+    LT 
Sbjct: 52  VDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 108

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  I + L FFASS+ +V  N+   + +    PE R +   Q   E++H + +  +I 
Sbjct: 109 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 168

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            L  DE +   LFN  +  P+I  K  WA+ + Q+ +  +              +L V +
Sbjct: 169 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNNDLA--------------ELIVAF 214

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  +     + G+    ++I RDE LH +F   ++ +  ++ P   
Sbjct: 215 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 271

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +++   ++ EA  +E  +   ++P   VG+N     QY++F+A++   ++GLE  +
Sbjct: 272 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 328

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             T NPFP+M   I L+ + NFFE RV EYQ+   +
Sbjct: 329 NVT-NPFPFMD-NISLENKTNFFEKRVAEYQRAQVM 362


>gi|152993970|ref|YP_001359691.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurovum sp.
           NBC37-1]
 gi|151425831|dbj|BAF73334.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp.
           NBC37-1]
          Length = 339

 Score =  230 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 101/348 (29%), Positives = 170/348 (48%), Gaps = 14/348 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I   E      D+++       + +L  +KY WA+  +    NN W P EV M  D+
Sbjct: 3   RKKIYNPESEERTSDRKIFGGDPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRDV 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +K    LTD E+    + L      +SL  NNI+  +   ++ PE    L+RQAFEEA
Sbjct: 63  NDYK---RLTDAEKQAYDKVLAQLIFMDSLQTNNIIDNLNPFITAPEVNLILVRQAFEEA 119

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +HS ++  ++ S+  +  E++ ++R    + +K +   +  + LS        ++   E 
Sbjct: 120 LHSQSYAVMVDSISTNSEEIYELWRRDMKLKSKNDAIAKVYEELS--------ENPTDEN 171

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           +        + EG++FY+GF  + +L R++KM+G A+  ++I RDE  HL    ++IN  
Sbjct: 172 IVKAMFANQILEGIYFYSGFTYLYTLARSDKMLGTAQMIRFIQRDEVTHLLLFQNMINAT 231

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P L+TKE       M  +A  LE  +         +GL     EQY+Q++A++R H
Sbjct: 232 KRERPELFTKELIDDVYQMFRDAVKLECEWGTYITQGQILGLTNEIIEQYIQYLADKRLH 291

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
            +GLE ++   E+P  W+        ++ NFFE  VT Y +G+    D
Sbjct: 292 AVGLEKIYNV-EHPIKWVDNFSQFNDQKTNFFEGNVTNYSKGSLDLDD 338


>gi|42525851|ref|NP_970949.1| ribonucleotide-diphosphate reductase subunit beta [Treponema
           denticola ATCC 35405]
 gi|41815901|gb|AAS10830.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
           denticola ATCC 35405]
          Length = 351

 Score =  230 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 89/350 (25%), Positives = 160/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +      +    ++M+   + ++N    +KY WA + Y  A NN W+P E+ M  D+ 
Sbjct: 11  KALFNENGDIETHKRKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQ 70

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L+  E+    + L F    +S+   N+   + ++++  E    L  QAF+EAV
Sbjct: 71  DYR---KLSIPEKTAYDKILSFLIFLDSIQTANLP-NVGQYVTANEVNLCLTIQAFQEAV 126

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R       K +  L          +     D      
Sbjct: 127 HSQSYSYMLDTICSPEE------RTEILYQWKDDEHLLRRNKFIGDLYNEFQSDKSALAF 180

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + V   + EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     +I +++
Sbjct: 181 LKVCVANYILEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSMIQELQ 240

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +  +  R M+ E    EIA+    +     GLN+     Y+Q++ N RC  
Sbjct: 241 KEEPQLFTPQNVELFRAMIKEGCEQEIAWGDYVIGNDIPGLNSQMITDYIQYLGNLRCEN 300

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G  P++  + E P    W S+  +    + +FFE + T Y + + +  D
Sbjct: 301 LGFAPIYDGHREEPQSMSWASQYSNANLIKTDFFEAKSTAYAKSSAMVDD 350


>gi|155370749|ref|YP_001426283.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella
           virus FR483]
 gi|155124069|gb|ABT15936.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella
           virus FR483]
          Length = 348

 Score =  230 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 96/336 (28%), Positives = 162/336 (48%), Gaps = 29/336 (8%)

Query: 19  VDDKRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++ + +L    +      P+KY   +  Y  A +  W   EVP+  D+A W+  + L DD
Sbjct: 26  INQEPLLADIGNRKYSAFPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWR--DKLNDD 83

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER  IK  LGFFA S+ +V  NI       +++P  R +   Q F E++HS  +  ++ +
Sbjct: 84  ERHFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDA 143

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           L  D+ E   LF+    +P++  KA WA ++                D+ F + L  + V
Sbjct: 144 LIEDDAERNSLFDAIETIPAVGKKAAWAQKFLSQ-------------DKSFAERLVAW-V 189

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG+ F   F  I  L     M G+    ++I RDE LH  FG  + ++++ +      
Sbjct: 190 CVEGLLFSGSFCAIFWLRNRGVMPGLGLSNEFISRDEGLHQQFGELLYSKLENKLSL--- 246

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
                + + ++ EA   E  +  E +P   +G+N+    QY++F+A+R    +G    + 
Sbjct: 247 ----AQVKAIVEEAVANEKEFICEAIPCRMIGMNSELMGQYLEFVADRIFVALGHPKQYN 302

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            T NPF +M E+I L+ + NFFE RV+EYQ+   + 
Sbjct: 303 AT-NPFDFM-ELISLEGKSNFFERRVSEYQRPGVMN 336


>gi|58617056|ref|YP_196255.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
           ruminantium str. Gardel]
 gi|58416668|emb|CAI27781.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia
           ruminantium str. Gardel]
          Length = 329

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 154/321 (47%), Gaps = 14/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA++ +L     HW+P EVP+ DD+  WK+   L+D E+ ++ +   FF  ++
Sbjct: 15  YKPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQAD 72

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +  
Sbjct: 73  IEVNNCYMKHYSNIFKPTEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 131

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  ++ +           K+  +   + L VF    EG+  +  FA +L+  R
Sbjct: 132 VMKKKYDYMQRFEE---------CRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 182

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   + +RDE+LH    I + N    EN  +W  + +++          LE 
Sbjct: 183 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDGDLKKELYEACSVIVTLED 242

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            + +     G   GL+A   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++  + 
Sbjct: 243 EFINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILNGVEH 302

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE RVTEY +   E  W+
Sbjct: 303 TNFFENRVTEYTRAATEGTWE 323


>gi|57239055|ref|YP_180191.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
           ruminantium str. Welgevonden]
 gi|15811135|gb|AAL08816.1|AF308664_1 hypothetical ribonucleoside reductase beta chain [Ehrlichia
           ruminantium]
 gi|57161134|emb|CAH58047.1| putative ribonucleoside-diphosphate reductase beta chain [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 324

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 154/321 (47%), Gaps = 14/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA++ +L     HW+P EVP+ DD+  WK+   L+D E+ ++ +   FF  ++
Sbjct: 10  YKPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQAD 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +  
Sbjct: 68  IEVNNCYMKHYSNIFKPTEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 126

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  ++ +           K+  +   + L VF    EG+  +  FA +L+  R
Sbjct: 127 VMKKKYDYMQRFEE---------CRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   + +RDE+LH    I + N    EN  +W  + +++          LE 
Sbjct: 178 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDDLKKELYEACSVIVTLED 237

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            + +     G   GL+A   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++  + 
Sbjct: 238 EFINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILNGVEH 297

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE RVTEY +   E  W+
Sbjct: 298 TNFFENRVTEYTRAATEGTWE 318


>gi|330837704|ref|YP_004412345.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374]
 gi|329749607|gb|AEC02963.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374]
          Length = 360

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 90/351 (25%), Positives = 163/351 (46%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
             PI        +D +RM+   + ++N    LKYGW  + Y  A NN W+P E+ M  D+
Sbjct: 19  RKPIFNEHGDTGLDKRRMVGGNTTNLNDFNNLKYGWTSDWYRQAMNNFWIPEEINMNTDV 78

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    L+  E+    + L F    +S+   N+   + + ++  E    L  QAF+EA
Sbjct: 79  QDYR---RLSPAEKTAYDKILSFLIFLDSVQTANLP-NLAQFITANEVNLCLTIQAFQEA 134

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +HS ++ Y++ ++   +       R       + +  L          +     + D   
Sbjct: 135 IHSQSYSYMLDTICSPDE------RTGILYQWRDDAHLLARNKFIGDLYQNFMVNQDVCQ 188

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           +    V   + EG++FY+GF    +LGR NKM G  ++ +YI RDE+ HL     ++ ++
Sbjct: 189 IVKTMVANYILEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDETTHLWLFRSILREM 248

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P ++T     + R M+ +    EIA+ H  +    VGLN      Y+Q++ N RC 
Sbjct: 249 QKEEPAMFTPNLVDEYRAMIKQGADQEIAWGHYVIGDDIVGLNKDMVTDYIQYLGNLRCT 308

Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +G +P+++ + + P    W+ +  +    + +FFE R T Y +   L  D
Sbjct: 309 DLGFQPIYEGHDKEPETMKWVGQYSNANLIKTDFFEARNTAYAKSTSLLDD 359


>gi|313683656|ref|YP_004061394.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994]
 gi|313156516|gb|ADR35194.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994]
          Length = 339

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 96/348 (27%), Positives = 175/348 (50%), Gaps = 15/348 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I       +V+D+++       + +L  +KY WA+  +    NN W P EV M  D 
Sbjct: 3   RKQIYNPTSTEHVNDRQIFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRDA 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +K    LT+ E+    + L      +SL  NN++  +  +++ PE    L+RQ+FEEA
Sbjct: 63  VDYK---YLTEMEKTAYDKALSQLIFMDSLQTNNLMDNVNPYVTAPEINLILVRQSFEEA 119

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +HS ++  ++ S+  +  E+++++R+   +  K +        L++        D  +  
Sbjct: 120 LHSQSYAVMVDSISQNSEEIYDLWRKDMMLKTKNDSIAARYDELAN--------DPSESA 171

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                    + EG++FY+GF  I +L R+ KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 172 FVKACFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNIINTL 231

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E   L+T+E  ++   M  +A  LE A+         +GL     EQY+Q++A++R  
Sbjct: 232 RRERSDLFTEELIEEVYDMFRKAVELETAWGKYITQGQILGLTNEIVEQYIQYLADQRLT 291

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
            +GL+PL+  + +P  W+ +      ++ NFFE  VT Y +G+ L +D
Sbjct: 292 AVGLKPLYNVS-HPIKWVDDFSKFNDQKTNFFEGTVTNYSKGS-LSFD 337


>gi|239628850|ref|ZP_04671881.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518996|gb|EEQ58862.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 347

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 89/350 (25%), Positives = 161/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +   +   + + +RM+   + ++N    +KY WA   Y  A NN W+P E+ +  D+ 
Sbjct: 7   KSLFNPQGDTDKNSRRMIGGNTTNLNDFNNMKYTWASAWYRQAMNNFWIPEEINLSTDVK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L+  ER    + L F    +S+   N+   I ++++  E    L  Q F+EAV
Sbjct: 67  DYR---NLSAAEREAFDKILSFLVFLDSIQTANLP-CIGQYITANEVNLCLTIQGFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+         + R+      K +  L    T     +    +  D   L
Sbjct: 123 HSQSYSYMLDSICSP------VERDRILYQWKEDGHLLKRNTFIGNLYNEFQERKDDITL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I ++K
Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFRSMIGELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T +  +    ML E    EI +    +     GL       Y++++ N R   
Sbjct: 237 KEEPGLFTPDNVKMLEDMLREGVSQEIEWGCYVIGDEVPGLTKDMVSSYIKYLGNLRWTG 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G EPL++ Y + P    W+++  +    + +FFE + T Y + A +  D
Sbjct: 297 LGFEPLYEGYGKEPESMAWVNQYSNANMVKTDFFEAKSTAYAKSAAIIDD 346


>gi|152989800|ref|YP_001355522.1| ribonucleotide-diphosphate reductase subunit beta [Nitratiruptor
           sp. SB155-2]
 gi|151421661|dbj|BAF69165.1| ribonucleoside-diphosphate reductase, beta subunit [Nitratiruptor
           sp. SB155-2]
          Length = 341

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 100/348 (28%), Positives = 175/348 (50%), Gaps = 15/348 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I   E   +V+++++       + +L  +KY WA+  +     N W P EV M  D 
Sbjct: 5   RKKIYNPESHESVNERKVFGGDPTGIFELNKIKYQWAYNLWEMMLANTWFPKEVDMTQDA 64

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +K    LTD E+L   + L      +SL  NN++  +  +++ PE    L+RQAFEEA
Sbjct: 65  RDYK---LLTDAEKLAYDKVLAQLIFMDSLQTNNLIDNVNPYITAPEINLILVRQAFEEA 121

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +HS ++  ++ S+  +  E++ ++RE   +  K ++     + L+         +   E 
Sbjct: 122 LHSQSYAVMVDSISQNTDEIYELWREDLQLKQKNDYIAHVYEELA--------ANPSDEN 173

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           +        + EG++FY+GF  + +L R+ KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 174 IVKAMFANQILEGIYFYSGFTYMYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQNMINTV 233

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P L+TKE       M   A  LE ++         +GL     EQY++++A+ R  
Sbjct: 234 KKERPELFTKELIDDVYKMFEGAVDLETSWGKYITQGQILGLTDEIIEQYIKYLADDRLK 293

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           ++GLEP++   E+P  W+ +      ++ NFFE  VT Y +G+ L +D
Sbjct: 294 RVGLEPMYNV-EHPIKWVDDFSKFNDQKTNFFEGNVTNYSKGS-LDFD 339


>gi|58578998|ref|YP_197210.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417624|emb|CAI26828.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 329

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 154/321 (47%), Gaps = 14/321 (4%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P  Y WA++ +L     HW+P EVP+ DD+  WK+   L+D E+ ++ +   FF  ++
Sbjct: 15  YKPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQAD 72

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V N  +          E    L   +  E +H   + Y++ ++G+ E E +  + +  
Sbjct: 73  IEVNNCYMKHYSNIFKPTEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 131

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K ++  ++ +           K+  +   + L VF    EG+  +  FA +L+  R
Sbjct: 132 VMKKKYDYMQRFEE---------CRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 182

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
             KM G+ +   + +RDE+LH    I + N    EN  +W  + +++          LE 
Sbjct: 183 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDDLKKELYEACSVIVTLED 242

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            + +     G   GL+A   ++Y+++IANRR  Q+ LEP++   +NP  W+ E+++  + 
Sbjct: 243 EFINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILNGVEH 302

Query: 333 KNFFETRVTEYQQ-GAELKWD 352
            NFFE RVTEY +   E  W+
Sbjct: 303 TNFFENRVTEYTRAATEGTWE 323


>gi|7672989|gb|AAF66689.1|AF144620_1 ribonucleotide reductase small subunit [shrimp white spot syndrome
           virus]
          Length = 413

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 89/336 (26%), Positives = 156/336 (46%), Gaps = 28/336 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           V+     +     +     P+ +   WE Y       W   E+  + D   W+    LT 
Sbjct: 52  VDTFKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 108

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  I + L FFASS+ +V  N+   + +    PE R +   Q   E++H + +  +I 
Sbjct: 109 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 168

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            L  DE +   LFN  +  P+I  K  WA+ + Q+ +  +              +L V +
Sbjct: 169 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNNDLA--------------ELIVAF 214

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  +     + G+    ++I RDE LH +F   ++ +  ++ P   
Sbjct: 215 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 271

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +++   ++ EA  +E  +   ++P   VG+N     QY++F+A++   ++GLE  +
Sbjct: 272 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 328

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             T NPFP+M   I L+ + NFFE RV EYQ+   +
Sbjct: 329 NVT-NPFPFMD-NISLENKTNFFEKRVAEYQRAQVM 362


>gi|227871657|ref|ZP_03990072.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268]
 gi|227842499|gb|EEJ52714.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268]
          Length = 347

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 165/351 (47%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
             P+   E  ++V ++RM+N  + ++N    ++Y W  + Y  A NN W+P E+ +  D 
Sbjct: 6   RKPLFNPEGDIDVRNRRMINFNTTNINDFNNMRYEWVSDWYRQAMNNFWVPEEINLNQDK 65

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
           + +     L++ ER    + L F    +SL + N+   I ++++  E    L  Q F+E 
Sbjct: 66  SDY---PKLSEAERRAYDKILSFLVYLDSLQSANLP-NISQYVTANEVNLCLSIQTFQEC 121

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +HS ++ Y++ ++           R       K +  L          +    +   ++ 
Sbjct: 122 IHSQSYSYMLDTICNP------TERNDILYQWKTDEHLLRRNEFIGNLYNEFVEKQSKDS 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
              + +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL F  +++ ++
Sbjct: 176 FLRVCIANFILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWFFRNMLLEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P L+ +    +   M+ +    EIA+    +     GLN    E Y++++ N R  
Sbjct: 236 KKEEPELFDEAHIAEITEMVKKGVEQEIAWGQYVIGDSIPGLNGKMVEDYIRYLGNLRYR 295

Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +GL  L++ Y + P    W+S+  D    + +FFE R T Y +   ++ D
Sbjct: 296 SLGLPNLYEGYEKEPESMKWVSQYADANMVKTDFFEARSTAYAKSTAIEDD 346


>gi|325261084|ref|ZP_08127822.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
           D5]
 gi|324032538|gb|EGB93815.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
           D5]
          Length = 347

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+   E  + V  ++M+   + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 7   KPLFNPEGDIEVTKRKMIGGNTTNLNDFNHMKYNWVSDWYRQAMNNFWVPEEINLSVDIK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    L   ER    + L F    +S+   N+   I  +++  E    L  Q F+EAV
Sbjct: 67  DYK---MLPAAERRAYDKILSFLIFLDSIQTANLP-NIGEYITANEVNLCLSIQTFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++           R       K +  L          +    ++   E L
Sbjct: 123 HSQSYSYMLDTICEP------QERNAVLYQWKEDRHLLERNEFIGNLYNAFQEEKSPEML 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +LGR  +M G  ++ +YI RDE+ HL     ++ ++K
Sbjct: 177 ACTLIANYILEGIYFYSGFMFFYNLGRNRRMPGSVQEIRYINRDENTHLWLFRSILMELK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  +K R+M+ E    EI + H  +     GLN      Y+Q++ N RC  
Sbjct: 237 KEEPWLFTAEKTEKYRSMIREGCEQEIRWGHYVIGDDIQGLNREMITDYIQYLGNLRCRG 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           + LEP+++ + + P    W+S+  +    + +FFE R T Y + + L  D
Sbjct: 297 LELEPVYEGHEKEPESMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346


>gi|88856487|ref|ZP_01131145.1| ribonucleotide-diphosphate reductase beta subunit [marine
           actinobacterium PHSC20C1]
 gi|88814354|gb|EAR24218.1| ribonucleotide-diphosphate reductase beta subunit [marine
           actinobacterium PHSC20C1]
          Length = 332

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 182/310 (58%), Gaps = 4/310 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY WA + Y  A  N W P E+ + +D+A +K    +TD+ER  +   + +F  +E
Sbjct: 14  LKPIKYQWAMDLYDQAVANTWFPNEIQLGEDIADFK---KMTDEERHAVTFLMSYFNPNE 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y ++S  EC  YL +Q +EEA H  +F+Y++ +  +D    +N + ++P
Sbjct: 71  LLVNKALAFGVYPYVSAAECSLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHIDIP 130

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + L+Y + ++  +    T +  Q+F+++L  + VV EG+WFY+GF   LS  +
Sbjct: 131 SMARKEEFELKYIRRMTEQTLDINTIEGKQDFIRNLVAYNVVLEGIWFYSGFMVALSFRQ 190

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FGI++I  +  ENP + T+EF  + R M+ +A  +E 
Sbjct: 191 RNLLRNFGSLMDWVVRDESLHLKFGINLILTVLEENPEIQTEEFADEIRQMILDAVEMEE 250

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           AY H+ +P G +GLNA    QY++++A+RR  ++G EP +K T NP  WM+   D  +  
Sbjct: 251 AYNHDLLPGGILGLNANYINQYVKYLADRRLEELGFEPHYKVT-NPAKWMATANDTLELV 309

Query: 334 NFFETRVTEY 343
           NFFE+  T Y
Sbjct: 310 NFFESTNTSY 319


>gi|225712968|gb|ACO12330.1| Ribonucleoside-diphosphate reductase small chain [Lepeophtheirus
           salmonis]
          Length = 335

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 84/331 (25%), Positives = 147/331 (44%), Gaps = 29/331 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
              ++ +L   +    + P+ Y   W  Y  A    W   EV +  DL  W     L  D
Sbjct: 12  QEKNEIILTPNNSKYVMFPIVYKDIWFMYKKALATFWTVEEVDLSKDLMDW---AKLNKD 68

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+  I   L FFA+S+ +V  N++      +   E R +   Q   E +HS  +  +I +
Sbjct: 69  EKHFISNVLAFFAASDGIVNENLLERFASEVQIAEARSFYGFQIMIENIHSEMYSLLIDT 128

Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D+ E   LFN    +  +  KA WAL++                D+ F   L  F  
Sbjct: 129 YIEDDKEKDKLFNSILTIECVKKKAEWALRWI-------------TGDKPFATRLVAFAA 175

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           V EG++F   FA +  L +   M G+    + I RDE  H +F   + + ++ +      
Sbjct: 176 V-EGIFFSGSFASLFWLKKRGLMPGLTFSNELISRDEGSHTDFACLLYSHLENKLDP--- 231

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
               +    ++ E   +E  +  +++P G +G+NA   + Y++F+A+     + +E  + 
Sbjct: 232 ----KYVLQIIKEGVEIEKEFVADSLPVGLIGMNAKMMKNYIEFVADNLLENLNIEKYY- 286

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +T+NPF +M   I +  + NFF+ RV+EYQ+
Sbjct: 287 HTKNPFNFMD-NISMTGKTNFFDKRVSEYQR 316


>gi|210616053|ref|ZP_03290925.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787]
 gi|210149961|gb|EEA80970.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787]
          Length = 355

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 159/349 (45%), Gaps = 15/349 (4%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+      + V  ++M+   + ++N    +KY W    Y  A NN W+P E+ +  D+  
Sbjct: 16  PLFNPNGDIQVQKRKMIGGNTTNLNDFNNMKYTWVSGWYRQAMNNFWIPEEINLGVDIKD 75

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           ++    L   E+    + L F    +S+   N+   I  +++  E    L  QAF+EAVH
Sbjct: 76  YR---NLPKAEKRAYDKILSFLIFLDSIQTANLP-GISEYITANEVNLCLSIQAFQEAVH 131

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ ++           R       K +  L          +     +   E L 
Sbjct: 132 SQSYSYMLDTICEP------QERNEVLYQWKEDEHLLARNEFIGNLYNAFQTEKSMEMLV 185

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
              V   + EG++FY+GF    +LGR   M G  ++ +YI RDE+ HL    +++ ++K 
Sbjct: 186 KTIVANYILEGIYFYSGFMFFYNLGRNQLMPGSVQEIRYINRDENTHLWLFRNILIELKK 245

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P L+T+++  + R+M+ E    EI + H  +     GLN      Y+Q++ N RC  +
Sbjct: 246 EQPDLFTEQYIDEYRSMIKEGCEQEIKWGHYVIGDDVQGLNREMITDYVQYLGNLRCTNL 305

Query: 308 GLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           G  P+++  E       W+S+  +    + +FFE R T Y + + L  D
Sbjct: 306 GFAPIYEGHETEPESMRWVSQYSNANAIKTDFFEARSTAYAKSSALVDD 354


>gi|190572323|ref|YP_001970168.1| putative ribonucleotide diphosphate reductase, small chain
           [Stenotrophomonas maltophilia K279a]
 gi|190010245|emb|CAQ43853.1| putative ribonucleotide diphosphate reductase, small chain
           [Stenotrophomonas maltophilia K279a]
          Length = 339

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 97/321 (30%), Positives = 174/321 (54%), Gaps = 8/321 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   ++ Y +A  N W   E+  Q D+    S   ++  ER +I R + FFA+ 
Sbjct: 17  TLRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHS--KMSPGERHLIHRLVAFFATG 74

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H   +  ++ +   D  E    F+  
Sbjct: 75  DSIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPEERAKAFSAV 134

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             + SI  KA++  ++  ++ S +    T++  ++FL +   F    EG++F+  FA + 
Sbjct: 135 ENIDSIKKKADFCFKWIDSIQSLT-RIETREQRRQFLLNQICFAACIEGLFFFAAFAYVY 193

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDES H+ F  + +  ++ E P L+ +E +Q+   ML EA 
Sbjct: 194 YFRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDEEMKQQVYDMLAEAI 253

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +A + +  G  G++     QY+Q  A++   ++G+E  +    NP P+M E+ D+
Sbjct: 254 ECEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYNV-RNPLPFM-ELQDV 311

Query: 330 KKEKNFFETRVTEYQQGAELK 350
           ++  NFFE RV+ YQ G + +
Sbjct: 312 QELTNFFERRVSAYQVGVQGE 332


>gi|134301991|ref|YP_001121960.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049768|gb|ABO46839.1| biofunctional glutaredoxin 3 protein/Ribonucleoside-diphosphate
           reductase beta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 410

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S
Sbjct: 99  TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E 
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            ++T K ++ +                   +  L       V  EG+  +  FA +L+  
Sbjct: 217 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELE 323

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +       G   GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++   
Sbjct: 324 DRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 383

Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
             NFFE RVTEY+       WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGSWD 405


>gi|56707665|ref|YP_169561.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670136|ref|YP_666693.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. tularensis
           FSC198]
 gi|187931834|ref|YP_001891819.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|224456732|ref|ZP_03665205.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370173|ref|ZP_04986179.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874478|ref|ZP_05247188.1| nrdB, biofunctional protein, glutaredoxin 3
           protein/ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604157|emb|CAG45165.1| Biofunctional protein, glutaredoxin 3
           protein/Ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110320469|emb|CAL08548.1| Biofunctional protein, glutaredoxin 3
           protein/Ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568417|gb|EDN34071.1| hypothetical protein FTBG_01287 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|187712743|gb|ACD31040.1| bifunctional protein: glutaredoxin 3/ribonucleotide reductase beta
           subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254840477|gb|EET18913.1| nrdB, biofunctional protein, glutaredoxin 3
           protein/ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158827|gb|ADA78218.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 410

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S
Sbjct: 99  TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E 
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            ++T K ++ +                   +  L       V  EG+  +  FA +L+  
Sbjct: 217 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELE 323

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +       G   GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++   
Sbjct: 324 DRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 383

Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
             NFFE RVTEY+       WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGSWD 405


>gi|303389600|ref|XP_003073032.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303302176|gb|ADM11672.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 326

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/328 (25%), Positives = 153/328 (46%), Gaps = 29/328 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+ + +   L P+++   W  Y  A ++ W   EV +  D+  WK    L   E+  
Sbjct: 8   EPLLDPKEERFVLFPIQHEDVWRMYKKAESSFWTVEEVLLDKDIEDWK---KLNPKEKHF 64

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +   D
Sbjct: 65  ISNVLAFFAASDGIVNLNLVERFSSEVKMLEAKLFYGFQIAIENIHSEMYSLLIDTYVRD 124

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             +   LFN  + +PS+  KA+WA+++ +            D + +F   L   +   EG
Sbjct: 125 GEQKKFLFNAVKTIPSVKDKADWAIKWIE------------DKNSDFATRLVA-FACVEG 171

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH  F   +  +   +          
Sbjct: 172 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLHRRYLKQ--------KC 223

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ + ++ +A  +E  +  E++P   +G+N     +Y++F+A+     +  E ++ +T N
Sbjct: 224 KRVKEVVMDAVEVEKRFLSESLPVDLIGMNCQLMCKYIEFVADTLLENLEEEKIY-HTPN 282

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           PF +M E I L  + NFF+ R ++YQ+ 
Sbjct: 283 PFDFM-ENISLVGKTNFFDKRESQYQKA 309


>gi|155122339|gb|ABT14207.1| hypothetical protein MT325_M653L [Paramecium bursaria chlorella
           virus MT325]
          Length = 326

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 96/335 (28%), Positives = 161/335 (48%), Gaps = 29/335 (8%)

Query: 20  DDKRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + + +L    +      P+KY   +  Y  A +  W   EVP+  D+A W+  + L DDE
Sbjct: 5   NQEPLLADIGNRKYSAFPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWR--DKLNDDE 62

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  IK  LGFFA S+ +V  NI       +++P  R +   Q F E++HS  +  ++ +L
Sbjct: 63  RHFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDAL 122

Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D+ E   LF+    +P++  KA WA ++                D+ F + L  + V 
Sbjct: 123 IEDDAERNSLFDAIETIPAVGKKAAWAQKFLSQ-------------DKSFAERLVAW-VC 168

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG+ F   F  I  L     M G+    ++I RDE LH  FG  + ++++ +       
Sbjct: 169 VEGLLFSGSFCAIFWLRNRGVMPGLGLSNEFISRDEGLHQQFGELLYSKLENKLSL---- 224

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
               + + ++ EA   E  +  E +P   +G+N+    QY++F+A+R    +G    +  
Sbjct: 225 ---AQVKAIVEEAVANEKEFICEAIPCRMIGMNSELMGQYLEFVADRIFVALGHPKQYNA 281

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           T NPF +M E+I L+ + NFFE RV+EYQ+   + 
Sbjct: 282 T-NPFDFM-ELISLEGKSNFFERRVSEYQRPGVMN 314


>gi|254521240|ref|ZP_05133295.1| ribonucleoside-diphosphate reductase, beta subunit
           [Stenotrophomonas sp. SKA14]
 gi|219718831|gb|EED37356.1| ribonucleoside-diphosphate reductase, beta subunit
           [Stenotrophomonas sp. SKA14]
          Length = 339

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 96/321 (29%), Positives = 169/321 (52%), Gaps = 8/321 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   ++ Y +A  N W   E+  Q D+    S   ++  ER +I R + FFA+ 
Sbjct: 17  TLRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHS--KMSPGERHLIHRLVAFFATG 74

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H   +  ++ +   D  E    F   
Sbjct: 75  DSIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPEERVKAFAAV 134

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             + SI  KA++  ++  ++        T+   ++FL +   F    EG++F+  FA + 
Sbjct: 135 ENIDSIKKKADFCFKWIDSIQDLK-RIETRAERRQFLLNQICFAACIEGLFFFAAFAYVY 193

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDES H+ F  + +  ++ E P L+  E +Q+   ML EA 
Sbjct: 194 YFRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDDEMKQQVYDMLAEAI 253

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +A + +  G  G++     QY+Q  A++   ++G+E  +    NP P+M E+ D+
Sbjct: 254 ECEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYNV-RNPLPFM-ELQDV 311

Query: 330 KKEKNFFETRVTEYQQGAELK 350
           ++  NFFE RV+ YQ G + +
Sbjct: 312 QELTNFFERRVSAYQVGVQGE 332


>gi|167756571|ref|ZP_02428698.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402]
 gi|237733862|ref|ZP_04564343.1| ribonucleotide-diphosphate reductase subunit beta [Mollicutes
           bacterium D7]
 gi|167702746|gb|EDS17325.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402]
 gi|229382943|gb|EEO33034.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus
           sp. D7]
          Length = 346

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/350 (25%), Positives = 159/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +   +  ++V  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+ 
Sbjct: 6   KALFNAKGDIDVRKRRMINGNTTNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLTQDIR 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L++ ER    + L F    +SL   N+   I  +++  E    L  QAF+EAV
Sbjct: 66  DYR---LLSEAERTAYDKILSFLVFLDSLQTANLP-NIGEYITANEINLCLTIQAFQEAV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+           R+      K +  L          +    +  D   L
Sbjct: 122 HSQSYSYMLDSICSPTK------RDEILYQWKFDEHLLKRNEFIGEQYNAFLEHKDSFHL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +LGR  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 176 MKTIMANYILEGIYFYSGFMFFYNLGRMGKMSGSAQEIRYINRDENTHLWLFRNMIIELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E  +  R ML      EIA+    +     GL       Y+ ++ N R   
Sbjct: 236 KEEPTLFTPEKIEVYRNMLKRGVEEEIAWGQYVLGNRIEGLTMDMVSDYIHYLGNLRAFS 295

Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +  EPL++          W+S   +    + +FFE + T Y + + ++ D
Sbjct: 296 LNFEPLYEGFETEPEAMKWVSIYSNANNIKTDFFEAKSTAYAKSSAIEDD 345


>gi|118497575|ref|YP_898625.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. novicida
           U112]
 gi|195536272|ref|ZP_03079279.1| ribonucleoside-diphosphate reductase, beta subunit domain
           [Francisella tularensis subsp. novicida FTE]
 gi|208779374|ref|ZP_03246720.1| ribonucleoside-diphosphate reductase, beta subunit domain
           [Francisella novicida FTG]
 gi|254372936|ref|ZP_04988425.1| hypothetical protein FTCG_00507 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118423481|gb|ABK89871.1| bifunctional protein: glutaredoxin 3 /ribonucleotide reductase beta
           subunit [Francisella novicida U112]
 gi|151570663|gb|EDN36317.1| hypothetical protein FTCG_00507 [Francisella novicida GA99-3549]
 gi|194372749|gb|EDX27460.1| ribonucleoside-diphosphate reductase, beta subunit domain
           [Francisella tularensis subsp. novicida FTE]
 gi|208745174|gb|EDZ91472.1| ribonucleoside-diphosphate reductase, beta subunit domain
           [Francisella novicida FTG]
 gi|332678274|gb|AEE87403.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Francisella cf. novicida Fx1]
          Length = 410

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S
Sbjct: 99  TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E 
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            ++T K ++ +                   +  L       V  EG+  +  FA +L+  
Sbjct: 217 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELE 323

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +       G   GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++   
Sbjct: 324 DKFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 383

Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
             NFFE RVTEY+       WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGSWD 405


>gi|260909050|gb|ACX54162.1| RR2 protein [Shrimp white spot syndrome virus]
 gi|260909052|gb|ACX54163.1| RR2 protein [Shrimp white spot syndrome virus]
 gi|260909054|gb|ACX54164.1| RR2 protein [Shrimp white spot syndrome virus]
 gi|260909056|gb|ACX54165.1| RR2 protein [Shrimp white spot syndrome virus]
          Length = 349

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 89/336 (26%), Positives = 156/336 (46%), Gaps = 28/336 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           V+     +     +     P+ +   WE Y       W   E+  + D   W+    LT 
Sbjct: 37  VDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 93

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  I + L FFASS+ +V  N+   + +    PE R +   Q   E++H + +  +I 
Sbjct: 94  DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 153

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            L  DE +   LFN  +  P+I  K  WA+ + Q+ +  +              +L V +
Sbjct: 154 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNNDLA--------------ELIVAF 199

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  +     + G+    ++I RDE LH +F   ++ +  ++ P   
Sbjct: 200 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 256

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +++   ++ EA  +E  +   ++P   VG+N     QY++F+A++   ++GLE  +
Sbjct: 257 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 313

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             T NPFP+M   I L+ + NFFE RV EYQ+   +
Sbjct: 314 NVT-NPFPFMD-NISLENKTNFFEKRVAEYQRAQVM 347


>gi|311743885|ref|ZP_07717691.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium
           marinum DSM 15272]
 gi|311313015|gb|EFQ82926.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium
           marinum DSM 15272]
          Length = 357

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 105/317 (33%), Positives = 179/317 (56%), Gaps = 4/317 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA E Y  A  N W P E+ + +DLA ++    ++D+ER  +   + +F  +E
Sbjct: 45  LKPVTYPWAMELYDQAVANTWFPNEIQLGEDLADFE---RMSDEERHALTFLMSYFNPNE 101

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H  +F+Y++ +  +D    +  +  VP
Sbjct: 102 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYGSHVTVP 161

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+ AK  + +++ + ++  +    T +  Q+F+++L  + V+ EG+WFY+GF   LS  +
Sbjct: 162 SMAAKEEFEIRFIRRMTEQTLDITTTEGKQDFVRNLVAYNVILEGIWFYSGFMVALSFRQ 221

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +I+RDESLHL FGI++I  +  ENP + T EF  + + M+ +A  +E 
Sbjct: 222 RNLLRNFGSLIDWIVRDESLHLKFGINLILTVLEENPEVATAEFAAEIQQMVLDAVEMEE 281

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
           AY  + +P G +GLNA    QY++++A+RR  ++G  P +  T NP  WM+   D  +  
Sbjct: 282 AYNRDLLPGGILGLNADYINQYVRYLADRRLEELGFGPHYGAT-NPAKWMATANDTLQLV 340

Query: 334 NFFETRVTEYQQGAELK 350
           NFFE   T Y+  A+L 
Sbjct: 341 NFFEATNTSYEVNAKLT 357


>gi|254374389|ref|ZP_04989871.1| glutaredoxin [Francisella novicida GA99-3548]
 gi|151572109|gb|EDN37763.1| glutaredoxin [Francisella novicida GA99-3548]
          Length = 410

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S
Sbjct: 99  TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E 
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            ++T K ++ +                   +  L       V  EG+  +  FA +L+  
Sbjct: 217 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELE 323

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +       G   GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++   
Sbjct: 324 DKFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 383

Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
             NFFE RVTEY+       WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGSWD 405


>gi|332184137|gb|AEE26391.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Francisella cf. novicida 3523]
          Length = 410

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S
Sbjct: 99  TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E 
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            ++T K ++ +                   +  L       V  EG+  +  FA +L+  
Sbjct: 217 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  KM G+ +  ++ +RDES+H+     +      ENP++   +F+++   M  +A  LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELE 323

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +       G   GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++   
Sbjct: 324 DKFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 383

Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
             NFFE RVTEY+       WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGSWD 405


>gi|254369307|ref|ZP_04985319.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122257|gb|EDO66397.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 410

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S
Sbjct: 99  TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E 
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            ++T K ++ +                   +  L       V  EG+  +  FA +L+  
Sbjct: 217 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELE 323

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +       G   GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++   
Sbjct: 324 DRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 383

Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
             NFFE RVTEY+       WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGSWD 405


>gi|289677030|ref|ZP_06497920.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. syringae FF5]
          Length = 243

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 153/243 (62%), Positives = 192/243 (79%)

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
           NPE RQY+LRQAFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++
Sbjct: 1   NPEGRQYILRQAFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSI 60

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
           S P F TGT D D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+R
Sbjct: 61  SDPKFETGTVDTDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILR 120

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DES+HLNFGIDVINQIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA
Sbjct: 121 DESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNA 180

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
              E Y++FIANRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L
Sbjct: 181 AMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGAL 240

Query: 350 KWD 352
            WD
Sbjct: 241 SWD 243


>gi|89256330|ref|YP_513692.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314778|ref|YP_763501.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502403|ref|YP_001428469.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010840|ref|ZP_02275771.1| ribonucleotide-diphosphate reductase beta subunit [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367665|ref|ZP_04983686.1| biofunctional protein: glutaredoxin 3
           protein-ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. holarctica 257]
 gi|290952877|ref|ZP_06557498.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313922|ref|ZP_06804487.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144161|emb|CAJ79423.1| Biofunctional protein, glutaredoxin 3
           protein/Ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. holarctica LVS]
 gi|115129677|gb|ABI82864.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253476|gb|EBA52570.1| biofunctional protein: glutaredoxin 3
           protein-ribonucleoside-diphosphate reductase, beta
           subunit [Francisella tularensis subsp. holarctica 257]
 gi|156253006|gb|ABU61512.1| bifunctional glutaredoxin /ribonucleoside-diphosphate reductase
           beta subunit [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 410

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S
Sbjct: 99  TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E 
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            ++T K ++ +                   +  L       V  EG+  +  FA +L+  
Sbjct: 217 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELE 323

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +       G   GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++   
Sbjct: 324 DRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 383

Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
             NFFE RVTEY+       WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGSWD 405


>gi|283768723|ref|ZP_06341634.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia
           extructa W1219]
 gi|283104509|gb|EFC05882.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia
           extructa W1219]
          Length = 348

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 95/357 (26%), Positives = 168/357 (47%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M+      P+   E  ++V  +R+LN   +++N    +KY W    Y  A NN W+P E+
Sbjct: 1   MSKGIQRKPLFNPEGDIDVCHRRLLNFDTTNINDFNNMKYTWVSNWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D + +     L+  ER    + L F    +SL + N+   I  +++  E    L  
Sbjct: 61  NLNQDKSDY---LNLSLAERSAYDKILSFLVYLDSLQSANLP-NIASYVTANEVNLCLSI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           Q F+E +HS ++ Y++ S+   E       R       K +  L    T     +    +
Sbjct: 117 QTFQECIHSQSYSYMLDSICSPE------QRNEILYQWKYDEHLLKRNTFIGHLYNEFLE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D++    + +   + EG++FY+GF    +L R  KM G  ++ +YI RDE+ HL    
Sbjct: 171 YQDKQSFLKVCIANFILEGIYFYSGFMFFYNLARHGKMPGSVQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           +++ +++ E P L+T    Q  + M+HE    EIA+    +     GLN+   E Y++++
Sbjct: 231 NILLELQKEEPELFTDSNIQMIKDMIHEGVQQEIAWGQYVIGNNIPGLNSQMVEDYIKYL 290

Query: 300 ANRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +GL  L++ Y E P    W+ +  D    + +FFE RVT Y + + ++ D
Sbjct: 291 GNTRFATLGLGNLYEGYEEEPETMRWVKQYSDANMVKTDFFEARVTAYAKSSAIEDD 347


>gi|209877302|ref|XP_002140093.1| ribonucleotide-diphosphate reductase, small subunit
           [Cryptosporidium muris RN66]
 gi|209555699|gb|EEA05744.1| ribonucleotide-diphosphate reductase, small subunit, putative
           [Cryptosporidium muris RN66]
          Length = 346

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 152/333 (45%), Gaps = 29/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +L++ + ++Q++  +    W  Y     + W   E+ +  D+  W+S   L + E+
Sbjct: 26  HEEPVLSSDTRLHQIIKSEIEVMWSMYKKEEASFWTAEEIDLGQDMRDWES---LKEPEK 82

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             IK  L FFA+S+ +V  N+ +   + +   E R Y   Q   E +HS T+  +I    
Sbjct: 83  HFIKYVLAFFAASDGIVMENLAVNFLKEIQIEEARMYYGFQIAMEQIHSETYSLLIDQYI 142

Query: 140 ---LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
               D   LF     +P++  KA WA ++     S                +  + +   
Sbjct: 143 SDVKDRQMLFEAISHLPAVKTKAKWATKWMNNNRS--------------FAERIIGFCAV 188

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG+ F   F  I  L +   M G+    + I RDE +H +FG  +   +    P+   +E
Sbjct: 189 EGILFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGIHADFGCLLYKTLNNRLPYGRVQE 248

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                  ++ EA  +E A+  +++P   +G+N+    QY++F+A+R    + +  ++  T
Sbjct: 249 -------IIAEAVEVERAFLCDSLPVDLIGMNSRLMAQYIEFVADRLLFALDVPKIYNVT 301

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            NPF WM  +I L+ + NFFE RV EYQ    +
Sbjct: 302 -NPFDWMD-LISLQGKTNFFEKRVAEYQMAGVM 332


>gi|188588149|ref|YP_001919720.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251778737|ref|ZP_04821657.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188498430|gb|ACD51566.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243083052|gb|EES48942.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 344

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 164/348 (47%), Gaps = 13/348 (3%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +   KR++N  + ++N    +KY WA + Y    NN W+P E+ +  DL 
Sbjct: 6   KPLFNEFGDRDPRLKRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    L  +ER    + L F    +S+   N+   I  +++  E    L  Q+F+EAV
Sbjct: 66  DYK---KLLPEERTAYDKILSFLIFLDSIQTANLS-NINSYITASEINLCLTIQSFQEAV 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       K +  L          +     + ++  L
Sbjct: 122 HSQSYSYMLDSICSPEE------RNEILYQWKDDEILLKRNKFIGDLYNEFINNPNEYNL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I +++
Sbjct: 176 IKTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            ENP  +T + + + + M+      EI + H  +     G+N    E Y++++ N+R  +
Sbjct: 236 SENPESFTTDLKNELKEMMRIGVENEILWGHYVIGDKIQGINKKLIEDYIKYLGNKRLKE 295

Query: 307 IGLEPLFKY-TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           IGL  LF+   ENP  W+  V +    + +FFE + T Y + + L  D
Sbjct: 296 IGLGMLFEGFEENPATWVDVVANSNSVKTDFFEAKSTAYAKVSTLIDD 343


>gi|322510501|gb|ADX05815.1| putative ribonucleotide reductase small subunit [Organic Lake
           phycodnavirus 1]
          Length = 324

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 94/329 (28%), Positives = 154/329 (46%), Gaps = 28/329 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    +   + P+     W+ Y    +  W   E+    DL  W   N L  +E+ 
Sbjct: 6   NEPLLTEDDNRFVMFPIVDEAIWKMYKKQVDCFWRAEEIDTSKDLNHW---NKLQPEEQY 62

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFASS+ +V  N+ L     +   E R +   Q   E +HS T+  +I S   
Sbjct: 63  YIKMILAFFASSDGIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDSYIK 122

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E   LF+     P I  K  WA+++              D    F   L   +   E
Sbjct: 123 DENEKNKLFHSLEHFPCIEKKGKWAMKWIN------------DKKSNFSTRLVA-FACVE 169

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L +   M G+    + I RDE+LH  F + + +        L  K  
Sbjct: 170 GIFFSGAFCSIYWLKKRGIMPGLTFSNELISRDEALHTEFAVHLFH-------KLEKKIN 222

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           ++K R ++ EA ++E  +  E++P   +G+N+    QY++++A+R   Q+G E ++  T 
Sbjct: 223 KKKIREIIEEAVVIEKEFIVESLPCRLIGMNSDLMTQYIEYVADRLMIQLGCEEIY-RTN 281

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           NPF +M E+I L+++ NFFE+RV+EY   
Sbjct: 282 NPFDFM-ELISLEQKTNFFESRVSEYSLA 309


>gi|57339646|gb|AAW49810.1| hypothetical protein FTT0532 [synthetic construct]
          Length = 445

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S
Sbjct: 125 TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 183

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E 
Sbjct: 184 DVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 242

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            ++T K ++ +                   +  L       V  EG+  +  FA +L+  
Sbjct: 243 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 289

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  KM G+ +  ++ +RDES+H+     +      ENP++   EF+++   M  +A  LE
Sbjct: 290 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELE 349

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +       G   GL A   +QY++ I +RR +Q+GL+ ++   +NP  W+  +++   
Sbjct: 350 DRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 409

Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
             NFFE RVTEY+       WD
Sbjct: 410 HTNFFENRVTEYEVAGLTGSWD 431


>gi|333030473|ref|ZP_08458534.1| ribonucleotide reductase [Bacteroides coprosuis DSM 18011]
 gi|332741070|gb|EGJ71552.1| ribonucleotide reductase [Bacteroides coprosuis DSM 18011]
          Length = 347

 Score =  225 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 162/350 (46%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +      ++V+ +RM+N  + ++N    +KYGW    Y  A NN W+P E+ M  D+ 
Sbjct: 7   KALFNEHGDIDVNKRRMINGNTTNMNDFNNMKYGWVSNWYRQAMNNFWIPEEINMSQDVK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            ++    L+  E+    R L F    +S+   N+   +  +++  E    L  QAF+EAV
Sbjct: 67  DYR---NLSGAEKRAYDRTLSFLIFLDSIQTANLP-YVGEYVTANEVNLCLTIQAFQEAV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       RE      + +  L          +     +     L
Sbjct: 123 HSQSYSYMLDSICSPEE------RERILYQWRNDEHLLKRNKFIGDIYNEFQLNKSTHQL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I +++
Sbjct: 177 LKTMVANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFQSIILELR 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T E   + R M+ E    E+A+    + +   GL       Y++++AN RC  
Sbjct: 237 KEEPQLFTVEAIAEFRAMIKEGAEQEMAWGEYVIEEEIEGLTQEMVSDYIKYLANLRCEN 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G E L+  Y + P    W+++  +    + +FFE + + Y +   +  D
Sbjct: 297 LGFEILYPGYEDEPASMSWVAQYSNANMIKTDFFEAKPSAYAKSTSIIDD 346


>gi|332297025|ref|YP_004438947.1| ribonucleotide reductase [Treponema brennaborense DSM 12168]
 gi|332180128|gb|AEE15816.1| ribonucleotide reductase [Treponema brennaborense DSM 12168]
          Length = 346

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 85/349 (24%), Positives = 148/349 (42%), Gaps = 15/349 (4%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   +   +V  + M+   + ++N    +KY W  + Y  A NN W+P E+ +  D   
Sbjct: 7   PLFNPDGDADVRLRSMVGGNTTNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLSQDTKD 66

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +     L + ER    + L F    +S+   N+   +  +++  E    L  Q F+E VH
Sbjct: 67  Y---PHLDEAERTAYDKILSFLIFLDSIQTANLP-NVGEYITANEVNLCLSIQTFQECVH 122

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ ++   E       R       K +  L    T     +    +  D     
Sbjct: 123 SQSYSYMLDTICSPE------QRNEILYQWKTDERLLKRNTFIGGCYNDFQEHKDFFRFM 176

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K 
Sbjct: 177 KVLIANYILEGIYFYSGFMFFYNLARNGKMPGSAQEIRYINRDENTHLWLFKNIILELKK 236

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P ++T+E       ML E    EI +    +     GL       Y+ ++ N R   +
Sbjct: 237 ERPDMFTEEKVASYAEMLKEGVRQEIEWGEYVIGDDIPGLTRKMVRDYITYLGNLRWTNL 296

Query: 308 GLEPLFKY-TENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
              PL+      P    W+S   +    + +FFE R T Y +   L  D
Sbjct: 297 DFPPLYPGFDTEPEDMAWVSAYSNANMVKTDFFEARSTAYAKSTALVDD 345


>gi|11544907|emb|CAC17632.1| class I ribonucleotide-diphosphate reductase small chain
           [Streptomyces microflavus]
          Length = 321

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 101/326 (30%), Positives = 177/326 (54%), Gaps = 10/326 (3%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           + + K +L+   ++  L P++Y   +E+Y  A  N W   EV +  D+A       L+  
Sbjct: 3   DKNQKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPG 58

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ MI R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH   +  ++ +
Sbjct: 59  EQHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDT 118

Query: 138 LGLDEGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
              D  E    +     +PSI  KA +  ++  ++        T+   + FL +L  F  
Sbjct: 119 YLPDPAERAAAFAAVENIPSIRDKAQFCFKWMDSVEKID-QLETRADRRRFLLNLICFAA 177

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
             EG++FY  FA +        + G+A    ++ RDE++H+NF  +V++ ++ E P L+ 
Sbjct: 178 CIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFD 237

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
              Q++   ML EA   E+ +  +   +G  G+N  S  +Y+Q +A++R  ++G  P++ 
Sbjct: 238 DALQEQVTAMLKEAVEAELQFGRDLCGEGLPGMNTESMREYLQCVADQRLTRLGFAPVYG 297

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRV 340
            +ENPF +M E+  +++  NFFE R 
Sbjct: 298 -SENPFAFM-ELQGVQELTNFFERRP 321


>gi|257067181|ref|YP_003153437.1| ribonucleotide-diphosphate reductase subunit beta [Anaerococcus
           prevotii DSM 20548]
 gi|256799061|gb|ACV29716.1| Ribonucleoside-diphosphate reductase [Anaerococcus prevotii DSM
           20548]
          Length = 352

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 93/356 (26%), Positives = 165/356 (46%), Gaps = 15/356 (4%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
                   I   +  +++  +R++   + ++N    LKY W  + Y  A NN W+P E+ 
Sbjct: 6   KKEVNKRGIFNEDGDIDLSKRRIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEIN 65

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D+  ++    L   E+    R L F    +S+   N+   +  +++  E    L  Q
Sbjct: 66  LNQDIKDYR---KLDKHEKKAFDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLSIQ 121

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
            ++E++HS ++ YI+ ++   E       R       K +  L          +    ++
Sbjct: 122 TYQESIHSQSYSYILDTICSPEE------RTRILYLWKEDEHLLKRNEFIGDQYNEFLEN 175

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+     + +   + EG++FY+GF+   +LGR  KM G  ++ +YI RDE+ HL     
Sbjct: 176 DDEFRFMKVLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRS 235

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +IN +K E   L+  E Q   R ML E    EIA+   ++     GLN    E Y++++ 
Sbjct: 236 LINDLKKEREDLFVPELQNYYREMLKEGVEQEIAWGKYSIGNSIAGLNEKMIEDYIKYLG 295

Query: 301 NRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           N R   +GLEPL++ Y E P    W+ E  D    + +FFE +VT Y + + ++ D
Sbjct: 296 NLRAKGLGLEPLYEGYKEIPESMKWVDEYSDPNGVKTDFFEAKVTAYSKSSIIEDD 351


>gi|193784694|dbj|BAG53847.1| unnamed protein product [Homo sapiens]
 gi|193787382|dbj|BAG52588.1| unnamed protein product [Homo sapiens]
          Length = 297

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 143/309 (46%), Gaps = 28/309 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  D+  W+S   L  +ER  I   L FFA+S+ +V  N+V   
Sbjct: 1   MYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
            + +   E R +   Q   E +HS  +  +I +   D  E   LFN    +P +  KA+W
Sbjct: 58  SQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL++                 +    +  V +   EG++F   FA I  L +   M G+ 
Sbjct: 118 ALRWIG-------------DKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLT 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   +   +         K  +++ R ++  A  +E  +  E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFKHLV-------HKPSEERVREIIINAVRIEQEFLTEALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
              +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV 
Sbjct: 218 VKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV-ENPFDFM-ENISLEGKTNFFEKRVG 275

Query: 342 EYQQGAELK 350
           EYQ+   + 
Sbjct: 276 EYQRMGVMS 284


>gi|223983469|ref|ZP_03633655.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM
           12042]
 gi|223964641|gb|EEF68967.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM
           12042]
          Length = 348

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 93/357 (26%), Positives = 157/357 (43%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M+ +     +   +   +V  +RM+N  + ++N    LKYGW  + Y  A NN W+P E+
Sbjct: 1   MSESLKRKALFNAQGDTDVRRRRMINGNTTNLNDFNTLKYGWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  DL  +     L    +  + + L F    +S+   N+   I   ++  E    L  
Sbjct: 61  NLGQDLKDY---PKLEPAVKTALDKTLSFLIFLDSIQTANLP-NIGEVITANEINLCLTI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+EAVHS ++ Y++ S    +       R       K +  L          +    +
Sbjct: 117 QAFQEAVHSQSYSYMLDSFCSPD------QRTEILYQWKEDPRLLKRNEFIGGLYNEFIE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
                 L    +   + EG++FY+GF    +LGR   M G  ++ +YI RDE+ HL    
Sbjct: 171 QRTPVQLMKTLIANYILEGIYFYSGFMFFYNLGRMGLMPGSVQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I +++ E P L+T E +Q  R ML +    EI +    +     GLN      Y++++
Sbjct: 231 SMILELRKEEPQLFTPEREQLYREMLKQGVEEEIEWGCAILGDEIPGLNKTMIRDYIRYL 290

Query: 300 ANRRCHQIGLEPLFKYTEN---PFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   I LE L+   E       W+S+  +    + +FFE R + Y + + LK D
Sbjct: 291 GNLRAKAIHLEILYPGEEEEPASMKWVSQYANANLIKTDFFEARSSAYAKASALKDD 347


>gi|313900116|ref|ZP_07833616.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
           HGF2]
 gi|312955168|gb|EFR36836.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
           HGF2]
          Length = 347

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 153/351 (43%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
             P+        V  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+
Sbjct: 6   RKPLFNEHGDCEVGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDV 65

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    L + E+    + L F    +S+   N+   +  +++  E    L  QAF+EA
Sbjct: 66  KDYR---RLREAEKTAYDKTLSFLIFLDSIQTANLP-NVGEYITANEVNLCLTIQAFQEA 121

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ S+           R       K +  L          +       D   
Sbjct: 122 VHSQSYSYMLDSICSP------QERTDILYQWKDDERLLNRNKFIGDLYNDFQTHRDGRH 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I ++
Sbjct: 176 LMKTMMANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+T+E  ++ + ML      EI +    +     GL       Y+ ++ N R +
Sbjct: 236 QKEEPQLFTEELIEEYKDMLRHGVEEEIRWGEYVIGNHIEGLTMEMVSDYIHYLGNLRSN 295

Query: 306 QIGLEPLFKYTEN---PFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +G   L+   EN      W+S   +    + +FFE R + Y + + L  D
Sbjct: 296 SLGFGSLYDGFENEPKSMEWVSMYANANLIKTDFFEARSSAYAKSSALVDD 346


>gi|167627842|ref|YP_001678342.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597843|gb|ABZ87841.1| Ribonucleoside-diphosphate reductase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 410

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/322 (25%), Positives = 141/322 (43%), Gaps = 17/322 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S
Sbjct: 99  TYKPFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E 
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            ++T K ++ +                   +  L       V  EG+  +  FA +L+  
Sbjct: 217 KAMTDKIDFMMD-------------ANPNTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  KM G+ +  ++ +RDES+H+     +      ENP++   +F+++   M  +A  LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELE 323

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +       G   GL A   ++Y++ I +RR +Q+GL  ++   +NP  W+  +++   
Sbjct: 324 DKFIDLAYEIGTIEGLKADEVKEYIRHITDRRLNQLGLNEIYNIDKNPLTWLEWILNGAD 383

Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
             NFFE RVTEY+       WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGNWD 405


>gi|332247270|ref|XP_003272776.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 2 [Nomascus leucogenys]
 gi|332247272|ref|XP_003272777.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           isoform 3 [Nomascus leucogenys]
          Length = 297

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 143/309 (46%), Gaps = 28/309 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  D+  W+S   L  +ER  I   L FFA+S+ +V  N+V   
Sbjct: 1   MYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
            + +   E R +   Q   E +HS  +  +I +   D  E   LFN    +P +  KA+W
Sbjct: 58  SQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL++                 +    +  V +   EG++F   FA I  L +   M G+ 
Sbjct: 118 ALRWIG-------------DKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLT 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   +   +         K  +++ R ++  A  +E  +  E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFKHLV-------HKPSEERVREIIINAVRIEQEFLTEALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
              +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV 
Sbjct: 218 VKLIGMNCILMKQYIEFVADRLMLELGFGKVFRV-ENPFDFM-ENISLEGKTNFFEKRVG 275

Query: 342 EYQQGAELK 350
           EYQ+   + 
Sbjct: 276 EYQRMGVMS 284


>gi|319936387|ref|ZP_08010803.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus
           sp. 29_1]
 gi|319808502|gb|EFW05054.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus
           sp. 29_1]
          Length = 346

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 157/351 (44%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              +      ++V  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+
Sbjct: 5   RKALFNASGDIDVRKRRMINGNTTNLNDFNNMKYNWVSDWYRQAMNNFWIPEEINLTQDI 64

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    L + E+    + L F    +SL   N+   +  +++  E    L  QAF+EA
Sbjct: 65  KDYR---LLNEHEKTAYDKILSFLVFLDSLQTANLP-NVGEYITANEINLCLTIQAFQEA 120

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ S+         + R+      K +  L          +    +  D   
Sbjct: 121 VHSQSYSYMLDSICSP------IERDEILYQWKYDEHLLKRNEFIGEQYNAFLEHKDSFH 174

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                +   + EG++FY+GF    +LGR  KM G A++ +YI RDE+ HL    ++I ++
Sbjct: 175 FMKTVIANYILEGIYFYSGFMFFYNLGRMGKMPGSAQEIRYINRDENTHLWLFRNMILEL 234

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+T +  +  R M+      EIA+    +     GL       Y+ ++ N R  
Sbjct: 235 QKEEPDLFTPDKIEVYRDMMKRGVEEEIAWGQYVLGDRIEGLTMKMVSDYIHYLGNFRAQ 294

Query: 306 QIGLEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +  EPLF+          W+S   +    + +FFE R + Y + + L+ D
Sbjct: 295 ALNFEPLFEDYMQEPESMKWVSIYSNANDIKTDFFEARSSAYAKSSALEDD 345


>gi|260912588|ref|ZP_05919119.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633300|gb|EEX51459.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 348

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/357 (24%), Positives = 159/357 (44%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M N    + +   +   ++  +RM+   + ++N    ++Y WA + Y  A NN W+P E+
Sbjct: 1   MDNKLKKNALFNPQGDTDLRQRRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +     L   ER    + L F    +SL + N+  ++   ++  E    L  
Sbjct: 61  NLTQDTKDY---PLLPPAERKAYDKILSFLVFLDSLQSANLP-SLTEFITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E VHS ++ Y++ ++   E       R       K +  L    T     +     
Sbjct: 117 QAFQECVHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFYA 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           + D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 NNDKASLMKTLIANYILEGIYFYSGFMFFYNLARNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           ++I+++K E P  +T E  +    M+ E    EIA+    +     GLN      Y++++
Sbjct: 231 NIIHEMKKEEPEYFTPEKVKLYEEMMREGVRQEIAWGQYVIGDEVQGLNGQMVNDYIRYL 290

Query: 300 ANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +G   LF+          W+S+  +    + +FFE + T Y +   ++ D
Sbjct: 291 GNMRWRSLGFGNLFEDNIEEPENMRWVSQYANANMVKTDFFEAKSTAYAKSTAIEDD 347


>gi|241668401|ref|ZP_04755979.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876934|ref|ZP_05249644.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254842955|gb|EET21369.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 410

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/322 (25%), Positives = 141/322 (43%), Gaps = 17/322 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P  Y WA +  +     HW+  E+ + +D+  WK+   +T  E+  I   L  F  S
Sbjct: 99  TYKPFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V  N          N E R  L   A  E +H   +  +  +LGL + E ++ + E 
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            ++T K ++ +                   +  L       V  EG+  +  FA +L+  
Sbjct: 217 KAMTDKIDFMMD-------------ANPNTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  KM G+ +  ++ +RDES+H+     +      ENP++   +F+++   M  +A  LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELE 323

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             +       G   GL A   ++Y++ I +RR +Q+GL  ++   +NP  W+  +++   
Sbjct: 324 DKFIDLAYEIGTIEGLKADEVKEYIRHITDRRLNQLGLNEIYNIDKNPLTWLEWILNGAD 383

Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
             NFFE RVTEY+       WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGNWD 405


>gi|320527966|ref|ZP_08029132.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium
           moorei F0204]
 gi|320131592|gb|EFW24156.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium
           moorei F0204]
          Length = 349

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/356 (25%), Positives = 164/356 (46%), Gaps = 15/356 (4%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
            +     P+   E  ++V ++R++N  + ++N    +KY W  + Y  A NN W+P E+ 
Sbjct: 3   TDQINRKPLFNPEGDIDVRNRRLINFNTTNINDFNNMKYNWVSDWYRQAMNNFWVPEEIN 62

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D + +     L+  E+    + L F    +SL + N+   I ++++  E    L  Q
Sbjct: 63  LNQDKSDY---PRLSLAEKTAYDKILSFLVYLDSLQSANLP-NISQYITANEVNLCLSIQ 118

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
            F+E +HS ++ Y++ S+   E       R       K +  L          +      
Sbjct: 119 TFQECIHSQSYSYMLDSICSPE------QRNDILYQWKTDEHLLKRNEFIGELYNEFVAK 172

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D++    + +   + EG++FY+GF    +L R  KM G  ++ +YI RDES HL    +
Sbjct: 173 QDKQSFLRVCIANFILEGVYFYSGFMFFYNLARNGKMPGSVQEIRYINRDESTHLWLFRN 232

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           ++ +++ E P L+T E  Q  R M++     EIA+ H  +     GLN      Y++++ 
Sbjct: 233 ILVELQKEEPELFTPENIQMIREMMNTGVEQEIAWGHYVIGDEIPGLNKQMVTDYIKYLG 292

Query: 301 NRRCHQIGLEPLF-KYTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           N R   +G   L+ +Y E P    W+ +  D    + +FFE R + Y +   ++ D
Sbjct: 293 NTRFATLGFGNLYEEYAEEPESMKWVKQYSDANMVKTDFFEARPSAYAKSGAIEDD 348


>gi|323343338|ref|ZP_08083565.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
           oralis ATCC 33269]
 gi|323095157|gb|EFZ37731.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
           oralis ATCC 33269]
          Length = 349

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 90/351 (25%), Positives = 156/351 (44%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            + +   E   ++  +RM+   + ++N    ++Y WA + Y  A NN W+P E+ +  D 
Sbjct: 8   RNALFNPEGDTDLRLRRMIGGNTTNLNDFNNMRYPWASDWYRQAMNNFWIPEEINLAQDT 67

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     L   ER    + L F    +SL +NN+   I  +++  E    L  QAF+E 
Sbjct: 68  KDY---PRLDKAERAAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQEC 123

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ ++   E       R       K +  L    T     +       D+  
Sbjct: 124 VHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFHDKRDKFS 177

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    +++ ++
Sbjct: 178 LMKTCVANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNILQEL 237

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P ++T E  +    M+ E    EIA+    +     GLN      Y+ ++ N R H
Sbjct: 238 KKEEPKMFTPEKVKVYEEMMREGVRQEIAWGQYVIGDEVPGLNTKMVSDYIHYLGNLRWH 297

Query: 306 QIGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +G   L+           W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 298 SLGFGYLYDENIQEPENMKWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|153875510|ref|ZP_02003277.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp.
           PS]
 gi|152068026|gb|EDN66723.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp.
           PS]
          Length = 374

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 141/354 (39%), Positives = 218/354 (61%), Gaps = 8/354 (2%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           ++ L  I  G KR +  D +++  R  DV Q +P+KY    E++L+A  N W+P E+PM 
Sbjct: 24  SSSLDAISIGTKRPSSSDIKIIGGRGYDVRQPIPVKYTSVRERFLNARKNFWIPNEIPMG 83

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
           +D   W +   LT+ E  + K N+ +  +S++LV +N+  AI +H++  E RQY   Q  
Sbjct: 84  EDKLQWNT-GLLTEAEMWLFKSNISYLTASDNLVPDNLDNAILKHITANEMRQYFRHQIM 142

Query: 123 EEAVHSHTFQYIITSLGLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           EE+ H  ++ +I+ S GLDE    ++FN+Y+EVP++T K NW L +T  + +     GT 
Sbjct: 143 EESNHIESYLFILESFGLDEKGQGQIFNLYQEVPALTEKLNWNLTFTNNVVNSEAPRGTL 202

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +A++  L+DL  +Y+ FE ++F  GF+QI +L R  K+   A+QY YI RDE+LH + G+
Sbjct: 203 EANRALLEDLISYYI-FEYLFFPLGFSQIFALARKGKLRNTAQQYSYIWRDENLHSSNGL 261

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQF 298
            +I QI  EN  LW    Q++SR ++ EA  LE  YAH +MP+ G VGL   +  ++  F
Sbjct: 262 WLIKQIIQENHELWDSTMQERSRAIVSEAVKLETDYAHASMPEGGIVGLPVKTYIKFSHF 321

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           +A+  C  +G++PLF+  E+P PW+SE  +L  E NFFE RV EYQ G++L WD
Sbjct: 322 VADNICKNLGIKPLFRVREHPMPWISEY-ELNHEVNFFEGRVREYQTGSQLTWD 374


>gi|50949848|emb|CAH10473.1| hypothetical protein [Homo sapiens]
          Length = 297

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 91/308 (29%), Positives = 147/308 (47%), Gaps = 28/308 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V   
Sbjct: 1   MYKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
            + +  PE R +   Q   E VHS  +  +I +   D  +   LFN    +P +  KA+W
Sbjct: 58  SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL++                 +    +  V +   EG++F   FA I  L +   M G+ 
Sbjct: 118 ALRWIA-------------DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLT 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   +   +  + P       +++ R ++ +A  +E  +  E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFQYLVNKPP-------EERVREIIVDAVKIEQEFLTEALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
            G +G+N    +QY++F+A+R   ++G   +F   ENPF +M E I L+ + NFFE RV+
Sbjct: 218 VGLIGMNCILMKQYIEFVADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVS 275

Query: 342 EYQQGAEL 349
           EYQ+ A +
Sbjct: 276 EYQRFAVM 283


>gi|227485717|ref|ZP_03916033.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236272|gb|EEI86287.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 352

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I      +++  ++++   + ++N    LKY W  + Y  A NN W+P E+ +  D+  +
Sbjct: 14  IFNENGDIDLAKRKIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L   E+    R L F    +S+   N+   +  +++  E    L  Q ++E++HS
Sbjct: 74  R---KLDQHEKRAFDRILSFLTYLDSIQTANLP-NLQTYVTANEINLCLSIQTYQESIHS 129

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R       K +  L          +     D ++     
Sbjct: 130 QSYSYILDTICSPEE------RTRILYLWKEDDHLLRRNEFIGEQYNEFLVDDNEFKFVR 183

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF+   +LGR  KM G  ++ +YI RDE+ HL     +IN +K E
Sbjct: 184 ALIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKE 243

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T E     R ML E    EI +    +     GL+    E Y++++ N R   +G
Sbjct: 244 RPDLFTPEATIVYRDMLKEGVRQEIEWGKYAIGDNIAGLSTTMIEDYIKYLGNLRAKGLG 303

Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +PLF+ YTE P    W+ E  D  + + +FFE +VT Y + + ++ D
Sbjct: 304 FDPLFEGYTEIPQSMKWVDEYSDPNRVKTDFFEAKVTAYSKSSIIEDD 351


>gi|309775830|ref|ZP_07670824.1| ribonucleoside-diphosphate reductase, beta subunit
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916368|gb|EFP62114.1| ribonucleoside-diphosphate reductase, beta subunit
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 347

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 154/351 (43%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
             P+        V  +RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+
Sbjct: 6   RKPLFNEHGDCEVGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDV 65

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    L + E+    + L F    +S+   N+   +  +++  E    L  QAF+EA
Sbjct: 66  KDYR---RLHEAEKTAYDKTLSFLIFLDSIQTANLP-NVGEYVTANEVNLCLTIQAFQEA 121

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ S+           R       K +  L          +    +  D   
Sbjct: 122 VHSQSYSYMLDSICSP------QERNDILYQWKDDERLLNRNKFIGDLYNDFQEHKDGLH 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I ++
Sbjct: 176 LMKTMMANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E PHL+T+E  Q+ + ML      EI +    +     GL       Y+ ++ N R +
Sbjct: 236 QKEEPHLFTEELIQEYKDMLRHGVEEEIRWGEYVIGNNIEGLTMEMVSDYIHYLGNLRSN 295

Query: 306 QIGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +G   L++          W+S   +    + +FFE R + Y + + L  D
Sbjct: 296 SLGFGSLYEGFESEPKSMEWVSMYANANLIKTDFFEARSSAYAKSSALVDD 346


>gi|293401949|ref|ZP_06646089.1| ribonucleoside-diphosphate reductase, beta subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304607|gb|EFE45856.1| ribonucleoside-diphosphate reductase, beta subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 347

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 85/351 (24%), Positives = 155/351 (44%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
             P+       +V ++RM+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+
Sbjct: 6   RKPLFNEHGDCDVINRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDV 65

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    L+  E+    + L F    +S+   N+   +  +++  E    L  QAF+EA
Sbjct: 66  KDYR---RLSQAEKNAYDKTLSFLIFLDSIQTANLP-NVGDYITANEVNLCLTIQAFQEA 121

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +HS ++ Y++ S+           R       K +  L          +       D   
Sbjct: 122 LHSQSYSYMLDSICSS------QERNDILYQWKNDARLLERNKFIGDLYNDFITHHDGIH 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I ++
Sbjct: 176 LMKTMMANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+T    ++ + ML      EI +    +     GL      +Y+ ++ N R  
Sbjct: 236 QKEEPQLFTPALVEEYKDMLRYGVEEEIRWGSYVIGNDIEGLTMQMVREYIYYLGNLRST 295

Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +G   L++ Y + P    W+S   +    + +FFE R + Y + + L  D
Sbjct: 296 SLGFGTLYEGYEKEPASMEWVSMYANANLIKTDFFEARSSAYAKSSALVDD 346


>gi|260591988|ref|ZP_05857446.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           veroralis F0319]
 gi|260536272|gb|EEX18889.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           veroralis F0319]
          Length = 348

 Score =  223 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 88/357 (24%), Positives = 158/357 (44%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M +    + +      V++  +RM+   + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 1   MEDKLKRNTLFNPSGDVDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +     L   ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 61  NLSQDFKDY---PRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E +HS ++ Y++ ++   E       R       K +  L          +    +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P ++T+E  +    M+ E    EIA+    +     GLN+     Y++++
Sbjct: 231 SIILELKKEEPDMFTEEKVKVYEDMMREGVRQEIAWGQYVIGNDVQGLNSQMVSDYIRYL 290

Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +G   L+    + P    W+ +  +    + +FFE R T Y +   L  D
Sbjct: 291 GNLRWSGLGFGFLYPDNQKEPENMKWVGQYSNANMVKTDFFEARSTAYAKSTALIDD 347


>gi|67585619|ref|XP_665115.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis TU502]
 gi|54655552|gb|EAL34885.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis]
          Length = 296

 Score =  223 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 140/308 (45%), Gaps = 29/308 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W+  E+ +  D   W+S   L D ER  IK  L FFA+S+ +V  N+ +  
Sbjct: 1   MYKKAEASFWVTEEIDLSQDTRDWES---LKDPERHFIKYVLAFFAASDGIVMENLAVNF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
            R +  PE R Y   Q   E +HS T+  +I     D  E   LF     + ++  KA W
Sbjct: 58  LREIQIPEARMYYAFQMSIEQIHSETYSLLIDRYITDIKERQMLFEAISHIEAVKKKAEW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           A ++  +  S                +  + +   EG+ F   F  I  L +   M G+ 
Sbjct: 118 ATKWMNSERS--------------FAERIIGFCAVEGILFSGSFCAIFWLKKRGLMPGLT 163

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   +   +K + P         + + ++ EA  +E  +  +++P
Sbjct: 164 FSNELISRDEGLHADFACLIYKALKFKLPAP-------RVQQIISEAVEVERNFLCDSLP 216

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
              +G+N+    QY++F+A+R    + +  ++  + NPF WM  +I L+ + NFFE RV 
Sbjct: 217 VDLIGMNSRLMAQYIEFVADRLLFALDIPKIYNVS-NPFDWMD-LISLQGKTNFFEKRVG 274

Query: 342 EYQQGAEL 349
           EYQ    +
Sbjct: 275 EYQMAGVM 282


>gi|148273612|ref|YP_001223173.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|170782700|ref|YP_001711034.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|147831542|emb|CAN02508.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|169157270|emb|CAQ02455.1| ribonucleoside-diphosphate reductase beta subunit [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 331

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 179/310 (57%), Gaps = 4/310 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA + Y  A  N W P E+ + +D+A +K    +TD+ER  I   + +F  +E
Sbjct: 15  LKPVNYQWAMDLYDQAVANTWFPNEIQLGEDIADFK---KMTDEERHAITFLMSYFNPNE 71

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++ PEC  YL +Q +EEA H  +F+Y++ +  +D    +N + ++P
Sbjct: 72  LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHVDIP 131

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + +++ + ++  +    T +  ++F+++L  + V+ EG+WFY+GF   LS  +
Sbjct: 132 SMARKEEFEVKFIKRMTEQTLDITTTEGKKDFVRNLVAYNVILEGIWFYSGFMVSLSFRQ 191

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +I+RDESLHL FGI++I  +  ENP L T+EF  + + M+ +A  +E 
Sbjct: 192 RNLLRNFGSLMDWIVRDESLHLKFGINLILTVLEENPDLQTEEFAAEIKQMILDAVEMEE 251

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P G +GLNA    QY++++A+RR  ++G E  +K + NP  WM+   D  +  
Sbjct: 252 QYNRDLLPNGILGLNANYINQYVKYLADRRLEELGFEAEYKVS-NPAKWMATANDTLQLV 310

Query: 334 NFFETRVTEY 343
           NFFE+  T Y
Sbjct: 311 NFFESTNTSY 320


>gi|225568010|ref|ZP_03777035.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM
           15053]
 gi|225163184|gb|EEG75803.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM
           15053]
          Length = 355

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 155/348 (44%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +   +V  +RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+  +
Sbjct: 17  LFNPDGDTDVRSRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEISLGVDIKDY 76

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                L  +ER    + L F    +S+   N+   I  +++  E    L  Q F+EAVHS
Sbjct: 77  ---PRLPAEERRAYDKILSFLIFLDSIQTANLP-HIGEYITANEINLCLSIQTFQEAVHS 132

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ ++   +       RE      K +  L          +    +      L  
Sbjct: 133 QSYSYMLDTICEPQK------REEILYQWKEDEHLLLRNEFIGSLYNEFQETKSARSLVR 186

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     ++ ++K E
Sbjct: 187 TLIANYILEGVYFYSGFMFFYNLGRNQKMPGSVQEIRYINRDENTHLWLFRSMLQELKKE 246

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+  E  +  R M+ E    EI + H  +     GL       Y++++ N RC  +G
Sbjct: 247 EPQLFAAEDIKMYRQMIREGCEQEIRWGHYVIGDKIQGLTKDMITSYIRYLGNLRCTGLG 306

Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            E +++ Y   P    W+ +  +    + +FFE + T Y + + L  D
Sbjct: 307 FERIYEGYDTIPESMRWVEQYSNANLIKTDFFEAKSTAYAKSSALVDD 354


>gi|312599293|gb|ADQ91316.1| hypothetical protein BpV2_149c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 387

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 88/337 (26%), Positives = 153/337 (45%), Gaps = 33/337 (9%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
            ML        + P+K+   W  Y  A  ++W   E+    D+  W   NGL+D+E+  I
Sbjct: 74  PMLLPTLSRFTVFPIKHENLWSLYKKAQMSNWTAEEIDFSKDMDDW---NGLSDNEKHFI 130

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
           K  L FFA S+ +V  NI       +   E R +   QA  E VH  T+  +I       
Sbjct: 131 KYILAFFAGSDGIVFENINNNFADEIQLTEARSFYAYQAHNEMVHGETYSKLIDKYIKSS 190

Query: 143 GE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            E   LF   + +P I  KA WA+++              D  + F + L   +   EG+
Sbjct: 191 TEKNQLFEAIQTIPCIERKAKWAMKW-------------FDKKRPFAERLLA-FACVEGI 236

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           +F   F  I  L +   + G+    + I RDE +H  F +++ N +K +          +
Sbjct: 237 FFSGSFCAIYWLKKRGLLPGLCFSNELISRDEGMHQEFAVELFNMLKNKPSG-------E 289

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
               ++ +A  +E  +  + +P   +G+N+    +Y++++A+R   Q+G + ++  T+NP
Sbjct: 290 IIEEIIRDAVTIEKEFITDALPCSLIGMNSSKMSEYIEYVADRLSKQVGHDKIWN-TKNP 348

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQG----AELKWD 352
           F +M E I L  + NFFE RV +Y +       +++D
Sbjct: 349 FDFM-ENISLDGKTNFFEKRVGDYGKMDEDTTSIEFD 384


>gi|148676854|gb|EDL08801.1| ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus]
          Length = 297

 Score =  222 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 145/308 (47%), Gaps = 28/308 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V   
Sbjct: 1   MYKQAQASFWTAEEVDLSKDLPHW---NKLKSDEKYFISHILAFFAASDGIVNENLVERF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
            + +  PE R +   Q   E VHS  +  +I +   D  +   LFN    +P +  KA+W
Sbjct: 58  SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL++                 +    +  V +   EG++F   FA I  L +   M G+ 
Sbjct: 118 ALRWIA-------------DRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLT 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   +   +  +         + + R ++ +A  +E  +  E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFQYLVNK-------PSEDRVREIIADAVQIEQEFLTEALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
            G +G+N    +QY++F+A+R   ++G   +F   ENPF +M E I L+ + NFFE RV+
Sbjct: 218 VGLIGMNCVLMKQYIEFVADRLLGELGFSKIF-QAENPFDFM-ENISLEGKTNFFEKRVS 275

Query: 342 EYQQGAEL 349
           EYQ+ A +
Sbjct: 276 EYQRFAVM 283


>gi|282860353|ref|ZP_06269421.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           bivia JCVIHMP010]
 gi|282586851|gb|EFB92088.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           bivia JCVIHMP010]
          Length = 347

 Score =  222 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 156/351 (44%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            + +   +   ++  +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +  D+
Sbjct: 6   RNALFNPQGDTDLRLRRMIGGNTTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINLAQDI 65

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     L   ER    + L F    +SL +NN+   I  +++  E    L  Q F+E 
Sbjct: 66  KDY---PNLPPAERKAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQTFQEC 121

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ S+   E       R       K +  L    T     +       ++  
Sbjct: 122 VHSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQAHRNKFC 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++
Sbjct: 176 LMKACIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNMIIEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P L+T E       M+ E    EIA+    +     GL       Y++++ N R  
Sbjct: 236 KQEEPELFTPEKVAIYEAMMREGVAQEIAWGQYVIGNEVQGLTQQMVSDYIRYLGNLRWK 295

Query: 306 QIGLEPLFKYTE-NP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +G + LF+  +  P    W+++  +    + +FFE + T Y +   L  D
Sbjct: 296 SLGFDYLFEDNQTEPTDMEWVAQYSNANMVKTDFFEAKSTAYAKSTALIDD 346


>gi|296271635|ref|YP_003654266.1| ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM
           7299]
 gi|296095810|gb|ADG91760.1| Ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM
           7299]
          Length = 339

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 95/349 (27%), Positives = 162/349 (46%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I   + + ++ D+R+     D +     +KY WA   + +   N W P EV M  D
Sbjct: 2   ARKTIYNPDSKESLSDRRIFGGNPDGMINFTKMKYQWALNLWDTMEANTWFPREVQMTGD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +K    LT  E+ M    L      +SL  NN++  I  +++ PE    L RQ++EE
Sbjct: 62  AKDYK---YLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITVPEINACLSRQSYEE 118

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A HS ++  ++ S+  +  E+++M++    +  K N+       LS              
Sbjct: 119 ANHSKSYAVMVESISDNTDEIYDMWKNDTQLREKNNYIAAVYDNLSDNITDEK------- 171

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY GFA I +LG++ KM+G ++  ++I RDE  HL    ++IN 
Sbjct: 172 -MVLAMFANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIKFIQRDEVTHLLLFQNMINS 230

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
            + E P L+T E + K R M  +A  LE A+         +G       QY+Q++A++R 
Sbjct: 231 TRKERPDLFTPELEVKVRAMFRKAVELEAAWGAYITQGQILGFTDGIITQYIQYLADKRL 290

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
             +G +P +   ++P PW+        +  NFFE  V  Y +G+    D
Sbjct: 291 DAVGYKPEYNV-KHPIPWVDGYSSFNDQRTNFFEGNVVNYSKGSIDFDD 338


>gi|328950373|ref|YP_004367708.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450697|gb|AEB11598.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis
           DSM 14884]
          Length = 332

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 114/315 (36%), Positives = 177/315 (56%), Gaps = 4/315 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L PL + WA+       +N W P EVP+ +D+  W     LT++ER      LGFF   E
Sbjct: 18  LFPLAHPWAYAHVQQGKHNTWFPEEVPLGEDVRDWHE--KLTEEERHAASLLLGFFNPME 75

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
           SLV  N+VLAI+ ++  PE R YL RQ +EEA H+  F+Y++ +L +D  ++F  +REVP
Sbjct: 76  SLVTQNLVLAIFPYVRAPEARLYLARQIWEEANHTMAFEYVLKTLPVDREKVFAAHREVP 135

Query: 154 SITAKANWALQYTQTL-SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
           ++ AK  +    TQ L         T+   +  L++L  ++VV EG++FY GF   LS  
Sbjct: 136 AVRAKEAFQTALTQALLQQHPLDLETRSGQEALLKNLVGYFVVLEGIFFYAGFLLALSWR 195

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R N + G+     + ++DESLHL+FG+ +I     E   + T    ++ R ++ EA  LE
Sbjct: 196 RRNLLKGLGAIIDWTLKDESLHLSFGLHLITGFLEEYSEVMTPRLAREVRGLILEAVQLE 255

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
            AY    +P+  +GL+A +   Y++++A+RR  ++GLE  F  T NP  WM+  +D+ + 
Sbjct: 256 RAYNQALLPRPILGLSAETLNAYVEYVADRRLEELGLEAAFG-TPNPAKWMATEVDVPEI 314

Query: 333 KNFFETRVTEYQQGA 347
            NFFE   T Y+ G 
Sbjct: 315 VNFFEAVNTSYEVGN 329


>gi|51891459|ref|YP_074150.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855148|dbj|BAD39306.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 346

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 90/354 (25%), Positives = 160/354 (45%), Gaps = 12/354 (3%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +       +   +R++     ++ +L  +KY WA +       N W+P EV
Sbjct: 1   MERLAERKRLFNEHGERDWGKRRIIGGNPTNIMELTNVKYEWAQKLSDIMLRNFWIPEEV 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
           P+ DD   +     LT DE+    R L F    +S++  ++   +  +++ PE    L  
Sbjct: 61  PLLDDAKQY---LELTADEQWAYDRMLSFVIFMDSILTVSMP-NLINYVTAPEINMCLSI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
             F EA+HS ++ Y++ S+   E   +           + +  L       + +F     
Sbjct: 117 HNFHEALHSKSYGYVLESVVPAERRQYIYDLW------REDRQLLERNRYIANTFQLFAD 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +   E      +   V EG++FY+GFA   +L R  KM G A + Q+I RDE  H+    
Sbjct: 171 NPTDEHFVRACMAQYVLEGIYFYSGFAFFYALARMGKMKGTATEIQFINRDEITHVAVFQ 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           +++N ++ E P L+T +     R M+ +A   E+A+A   +     GL+    + Y++ +
Sbjct: 231 NILNGLRQERPQLFTPQLDADLRAMIRQAAEHEMAWAAYCVGNRIQGLSGEVLQGYVKHL 290

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           A++R   +G EPL+    NP  W+    +L   + +FFETRVT Y +   +  D
Sbjct: 291 ADQRARALGFEPLYGNHPNPIKWVESFSNLNQTKADFFETRVTNYAKSTNIDLD 344


>gi|227501022|ref|ZP_03931071.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC
           35098]
 gi|227216795|gb|EEI82193.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC
           35098]
          Length = 352

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I   +  +++  ++++   + ++N    LKY W  + Y  A NN W+P E+ +  D+  +
Sbjct: 14  IFNEDGDIDLGKRKIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L   E+    R L F    +S+   N+   +  +++  E    L  Q ++E++HS
Sbjct: 74  R---KLDQYEKKAYDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHS 129

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R       K +  L          +    ++ D+     
Sbjct: 130 QSYSYILDTICSPEE------RTRILYLWKEDEHLLKRNEFIGEQYNEFLENDDEFRFMK 183

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           + V   + EG++FY+GF+   +LGR  KM G  ++ +YI RDE+ HL     +IN +K E
Sbjct: 184 VLVANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKE 243

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
              L+  E Q   R ML E    EIA+    +     GLN    E Y++++ N R   +G
Sbjct: 244 REDLFVPELQNYYRNMLKEGVEQEIAWGKYAIGNEIAGLNEKMIEDYIKYLGNLRAKGLG 303

Query: 309 LEPLFKY-TENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           LE L++   E P    W+ E  D    + +FFE +VT Y + + ++ D
Sbjct: 304 LEALYEGFDEIPESMKWVDEYSDPNGVKTDFFEAKVTAYSKSSIIEDD 351


>gi|50955339|ref|YP_062627.1| ribonucleotide-diphosphate reductase subunit beta [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|50951821|gb|AAT89522.1| ribonucleoside-diphosphate reductase, beta chain [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 329

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 102/319 (31%), Positives = 181/319 (56%), Gaps = 7/319 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+KY WA + Y  A  N W P E+ + +D+A +K    +TD+ER  +   + +F  +E
Sbjct: 14  LKPVKYQWAMDLYDQAVANTWFPNEIQIGEDIADFK---KMTDEERHAVTFLMSYFNPNE 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  E   YL +Q +EEA H  +F+Y++ +  +D  + +N + +VP
Sbjct: 71  LLVNKALAFGVYPYINAAEAHLYLAKQMWEEANHCMSFEYVLETFPIDREQAYNSHVDVP 130

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+ +K  + +++ + ++  +    T +  Q+F+++L  + V+ EG+WFY+GF   LS  +
Sbjct: 131 SMASKEEFEVRFIKRMTEQALDITTTEGKQDFIRNLIAYNVILEGIWFYSGFMVALSFRQ 190

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FGI++I  +  ENP L T EF  + + M+ +A  +E 
Sbjct: 191 RNLLRNFGSLIDWVVRDESLHLKFGINLILTVLEENPDLQTPEFAAEIKQMILDAVEMEE 250

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P G +GLNA    QY++++A+RR  ++G E  +K + NP  WM+   D  +  
Sbjct: 251 QYNRDLLPGGILGLNANYINQYVKYLADRRLEELGFEAEYKVS-NPAKWMATANDTLELV 309

Query: 334 NFFETRVTEY---QQGAEL 349
           NFFE+  T Y    + +  
Sbjct: 310 NFFESTNTSYESNAKASSG 328


>gi|315452596|ref|YP_004072866.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis
           ATCC 49179]
 gi|315131648|emb|CBY82276.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis
           ATCC 49179]
          Length = 347

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 94/344 (27%), Positives = 167/344 (48%), Gaps = 14/344 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
           G   I   +      D+R+       +  L  +KY WA + + +  +N W P EV M  D
Sbjct: 10  GRKKIYNPQSAEPAKDRRIFGGNPTGMFDLNQIKYQWAHKIWKTMLHNTWFPEEVSMHGD 69

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+  E++   R L      +SL  NN++  I   +++PE    L+RQA+EE
Sbjct: 70  KTHY---LKLSTQEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEE 126

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH++  ++ S+  +  E++ M+R   ++  K +   Q    L+              
Sbjct: 127 ALHSHSYAVMVESISANSDEIYEMWRTDEALKNKNDCVAQVYMDLAHTQTERNL------ 180

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL     +I+ 
Sbjct: 181 --LKALVANQILEGIYFYSGFSFFYALARSGKMLGSAQMIRFIQRDEVTHLALFQSMIHT 238

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +K E P L++K+  ++   M  EA  LE  +         + LN  +   Y++++A+ R 
Sbjct: 239 LKKERPDLFSKDLVEEILEMFKEAVDLESTWGRVITQGEILDLNPVTLRAYIEYLADTRL 298

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGA 347
           H IGL  ++ +T++P  W+ +      +  NFFE RV+ Y +G+
Sbjct: 299 HAIGLPKIY-HTKHPMRWVDQFSSFNSQRSNFFEARVSNYSKGS 341


>gi|114621164|ref|XP_001153859.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
 gi|332214017|ref|XP_003256123.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           [Nomascus leucogenys]
 gi|332830969|ref|XP_003311933.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Pan
           troglodytes]
 gi|119612248|gb|EAW91842.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_c [Homo
           sapiens]
 gi|194385642|dbj|BAG65196.1| unnamed protein product [Homo sapiens]
          Length = 297

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 146/308 (47%), Gaps = 28/308 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V   
Sbjct: 1   MYKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
            + +  PE R +   Q   E VHS  +  +I +   D  +   LFN    +P +  KA+W
Sbjct: 58  SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL++                 +    +  V +   EG++F   FA I  L +   M G+ 
Sbjct: 118 ALRWIA-------------DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLT 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   +   +  +         +++ R ++ +A  +E  +  E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFQYLVNK-------PSEERVREIIVDAVKIEQEFLTEALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
            G +G+N    +QY++F+A+R   ++G   +F   ENPF +M E I L+ + NFFE RV+
Sbjct: 218 VGLIGMNCILMKQYIEFVADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVS 275

Query: 342 EYQQGAEL 349
           EYQ+ A +
Sbjct: 276 EYQRFAVM 283


>gi|150005609|ref|YP_001300353.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           vulgatus ATCC 8482]
 gi|254884474|ref|ZP_05257184.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
           4_3_47FAA]
 gi|294778581|ref|ZP_06744003.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides
           vulgatus PC510]
 gi|319640834|ref|ZP_07995547.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
           3_1_40A]
 gi|149934033|gb|ABR40731.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides
           vulgatus ATCC 8482]
 gi|254837267|gb|EET17576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
           4_3_47FAA]
 gi|294447530|gb|EFG16108.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides
           vulgatus PC510]
 gi|317387646|gb|EFV68512.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
           3_1_40A]
          Length = 349

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   E   ++  +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +  D   +
Sbjct: 11  LFNPEGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTKDY 70

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                L   ER    + L F    +SL +NN+   I  +++  E    L  QAF+E VHS
Sbjct: 71  ---PHLDQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHS 126

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ S+   E       R       K +  L    T     +    +  D   L  
Sbjct: 127 QSYSYMLDSICSPEK------RNEILYQWKTDGHLLKRNTFIGNCYNEFQESQDGFTLMK 180

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E
Sbjct: 181 TLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKE 240

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T +  +    M+ E    EI +    +     GLN    E Y+Q++ N R   +G
Sbjct: 241 EPDLFTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNRKMIEDYIQYLGNLRWSSLG 300

Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             PL++   + P    W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 301 FGPLYEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|288801822|ref|ZP_06407264.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           melaninogenica D18]
 gi|302344783|ref|YP_003813136.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           melaninogenica ATCC 25845]
 gi|288335864|gb|EFC74297.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           melaninogenica D18]
 gi|302149273|gb|ADK95535.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           melaninogenica ATCC 25845]
          Length = 348

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/357 (24%), Positives = 155/357 (43%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M N    + +      + +  +RM+   + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 1   MDNQLKRNTLFNPSGDIELRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +     L   ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 61  NLSQDFKDY---PRLEKAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E +HS ++ Y++ ++   E       R       K +  L          +    +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P ++T E  +    M+ E    EIA+    +     GLNA     Y++++
Sbjct: 231 SIILELKKEEPDMFTPEKIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNAQMVSDYIRYL 290

Query: 300 ANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +G   L+   +       W+ +  +    + +FFE + T Y +   L  D
Sbjct: 291 GNLRWSGLGFGFLYDDNQKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALIDD 347


>gi|282879357|ref|ZP_06288101.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           buccalis ATCC 35310]
 gi|282881358|ref|ZP_06290037.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           timonensis CRIS 5C-B1]
 gi|281298554|gb|EFA90979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           buccalis ATCC 35310]
 gi|281304764|gb|EFA96845.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           timonensis CRIS 5C-B1]
          Length = 347

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/351 (25%), Positives = 161/351 (45%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            + +       ++  +RM+   + ++N    +KY WA + Y  A NN W+P E+ +  D 
Sbjct: 6   RNSLFNPNGDTDLRLRRMIGGNTTNLNDFNNMKYQWASDWYRQAMNNFWIPEEINLTQDT 65

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     L   ER    + L F    +SL +NN+  ++  +++  E    L  QAF+E 
Sbjct: 66  KDY---PRLDKAERTAYDKILSFLVFLDSLQSNNLP-SLCEYITANEVNLCLHIQAFQEC 121

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ ++   E       R       K +  L    T     +    +  D   
Sbjct: 122 VHSQSYSYMLDTICSPEQ------RNDILYQWKTDEHLLRRNTFIGNCYNEFHEKQDLYA 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++
Sbjct: 176 LMKTCIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIIKEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P ++T E  +    M+ E    EIA+    +     GLNA     Y+ ++ N R H
Sbjct: 236 KKEEPEMFTPEKVKVYEEMMREGVRQEIAWGQYVIGNDIQGLNAQMVTDYIHYLGNLRWH 295

Query: 306 QIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +G + L++   + P    W+++  D    + +FFE + T Y +   ++ D
Sbjct: 296 SLGFDYLYEDNQKEPEDMKWVAQYSDPNMVKTDFFEAKSTAYAKSTAIEDD 346


>gi|288800286|ref|ZP_06405744.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332499|gb|EFC70979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 347

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            + +       ++  +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +  D 
Sbjct: 6   RNALFNPMGDTDLRLRRMIGGNTTNLNDFNNMRYQWVSDWYRQAMNNFWIPEEINLTQDT 65

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     L   ER    + L F    +SL + N+  ++  +++  E    L  QAF+E 
Sbjct: 66  KDY---PKLDKAERTAYDKILSFLVFLDSLQSTNLP-SLTEYVTANEVNLCLHIQAFQEC 121

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ ++   E       R       K +  L    T     +    +  D+  
Sbjct: 122 VHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLKRNTFIGDLYNEFHEKRDRYT 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++
Sbjct: 176 LVKTCIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIIQEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P L+T +       M+ E    EIA+    +     GLNA   + Y++++ N R H
Sbjct: 236 KKEEPDLFTPDKVAVYEAMMREGVEQEIAWGQYVIGNDIQGLNAQMVDDYIRYLGNLRWH 295

Query: 306 QIGLEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +G + L++          W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 296 SLGFDYLYEDNRTEPENMRWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 346


>gi|307565004|ref|ZP_07627521.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           amnii CRIS 21A-A]
 gi|307346317|gb|EFN91637.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           amnii CRIS 21A-A]
          Length = 347

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 157/351 (44%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            + +   +   ++  +RM+    +++N    ++Y W  + Y  A NN W+P E+ +  D+
Sbjct: 6   RNALFNPQGDTDLRLRRMIGGNSTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINLAQDI 65

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     L   ER    + L F    +SL +NN+   I  +++  E    L  Q F+E 
Sbjct: 66  KDY---PNLPAAERKAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQTFQEC 121

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ ++   E       R       K +  L    T     +     + D+  
Sbjct: 122 VHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQANRDKFC 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++
Sbjct: 176 LMKACVANFILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIIVEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P L+T E       M+ E    EIA+    +     GL       Y++++ N R  
Sbjct: 236 KQEEPDLFTPEKVAVYEEMMREGVRQEIAWGQYVIGNDVQGLTQQMVYDYIRYLGNLRWK 295

Query: 306 QIGLEPLFKYTE-NP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +G + LF+  +  P    W+++  +    + +FFE + T Y +   L  D
Sbjct: 296 SLGFDYLFEDNQAEPADMQWVAQYSNANMVKTDFFEAKSTAYAKSTALIDD 346


>gi|303237757|ref|ZP_07324316.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           disiens FB035-09AN]
 gi|302482043|gb|EFL45079.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           disiens FB035-09AN]
          Length = 349

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            + +   +   ++  +RM+   + ++N    +KY W  + Y  A NN W+P E+ +  D+
Sbjct: 8   RNALFNPQGDTDLRLRRMIGGNTTNLNDFNNMKYVWVSDWYRQAMNNFWIPEEINLAQDI 67

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     L   ER    + L F    +SL +NN+   I  +++  E    L  Q F+E 
Sbjct: 68  KDY---PNLPQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQTFQEC 123

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +HS ++ Y++ ++   E       R       K +  L    T     +    +  D+  
Sbjct: 124 IHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLKRNTFIGDCYNEFQEKRDKFA 177

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++
Sbjct: 178 LMKACMANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIIVEL 237

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P L+T E       M+ E    EIA+    +     GL       Y+ ++ N R  
Sbjct: 238 KQEQPELFTPERIAVYEEMMREGVRQEIAWGQYVIGDKVQGLTQQMVADYIHYLGNLRWR 297

Query: 306 QIGLEPLFKYTEN-P--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +G   L+++ +N P    W+++  +  K + +FFE + T Y +   L  D
Sbjct: 298 SLGFGNLYEHNQNEPDDMQWVAQYSNANKVKTDFFEAKSTAYAKSTALIDD 348


>gi|291165654|gb|EFE27703.1| ribonucleoside-diphosphate reductase, beta subunit [Filifactor
           alocis ATCC 35896]
          Length = 348

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/357 (25%), Positives = 162/357 (45%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +      + +  +RM+N  + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 1   MVEEIKRKQLFNENGDIELSKRRMINGNTTNLNDFNNMKYTWVSDWYRHAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D+  ++    L  +E+    + L F    +SL   N+   +   ++  E    L  
Sbjct: 61  NLTQDIKDYR---NLEIEEKEAYDKILSFLIFLDSLQTANLP-NVGEFITANEVNLCLTI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QA++EA+HS ++ YI+ S+   E       R       K +  L          +     
Sbjct: 117 QAYQEAIHSQSYGYILDSICSPEE------RTEILYQWKDDPFLLARNKFIGDQYNDFYY 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +  +  L    +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    
Sbjct: 171 NRTKYNLVKTVIANYILEGIYFYSGFMFFYALGRNGKMPGTVQEIRYINRDENSHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P L+T E  +  R M+ +    EI +A+  +     GL     E Y++++
Sbjct: 231 SIILELKKEEPELFTPENIEVFRNMIRQGVEEEIKWANYVIGDHIKGLTMQMVEDYLKYL 290

Query: 300 ANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N RC  +G EP+++          W+SE  D    + +FFE +V+ Y + + ++ D
Sbjct: 291 GNLRCRGLGFEPIYEGYQREPESMSWVSEYSDPNAIKTDFFEGKVSAYAKSSVIEDD 347


>gi|212693366|ref|ZP_03301494.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855]
 gi|237710423|ref|ZP_04540904.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
           9_1_42FAA]
 gi|237726931|ref|ZP_04557412.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
           D4]
 gi|212664010|gb|EEB24584.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855]
 gi|229433787|gb|EEO43864.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           dorei 5_1_36/D4]
 gi|229455145|gb|EEO60866.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
           9_1_42FAA]
          Length = 349

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   E   ++  +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +  D   +
Sbjct: 11  LFNPEGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTKDY 70

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                L   ER    + L F    +SL +NN+   I  +++  E    L  QAF+E VHS
Sbjct: 71  ---PHLDQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHS 126

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ S+   E       R       K +  L    T     +    +  D   L  
Sbjct: 127 QSYSYMLDSICSPEK------RNEILYQWKTDEHLLKRNTFIGNCYNEFQESQDGFTLMK 180

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E
Sbjct: 181 TLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKE 240

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T +  +    M+ E    EI +    +     GLN    E Y+Q++ N R   +G
Sbjct: 241 EPDLFTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNRKMIEDYIQYLGNLRWSSLG 300

Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             PL++   + P    W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 301 FGPLYEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|325478871|gb|EGC81981.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 352

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 167/348 (47%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I   +  +++  ++++   + ++N    LKY W  + Y  A NN W+P E+ +  D+  +
Sbjct: 14  IFNEDGDIDLAKRKIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L + E+    R L F    +S+   N+   +  +++  E    L  Q ++E++HS
Sbjct: 74  R---NLDEHEKRAFDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHS 129

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R       K +  L          +    K+ D+     
Sbjct: 130 QSYSYILDTICSPEE------RTRILYLWKEDEHLLKRNEFIGEQYNEFLKNDDEFRFMK 183

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V   + EG++FY+GF+   +LGR  KM G  ++ +YI RDE+ HL     +IN ++ E
Sbjct: 184 ALVANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLRKE 243

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
              L+TKE ++  R ML E    EIA+    +     GL+    E Y++++ N R   +G
Sbjct: 244 REDLFTKEHKEYYRNMLKEGVEQEIAWGKYAIGDNIAGLSEKMIEDYIKYLGNLRAKGLG 303

Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           LE L++ YTE P    W+ E  D    + +FFE +VT Y + + ++ D
Sbjct: 304 LEALYEGYTEIPDSMKWVDEYSDPNAVKTDFFEAKVTAYSKSSIIEDD 351


>gi|28493649|ref|NP_787810.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma
           whipplei str. Twist]
 gi|28572842|ref|NP_789622.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma
           whipplei TW08/27]
 gi|28410975|emb|CAD67360.1| ribonucleotide-diphosphate reductase small chain [Tropheryma
           whipplei TW08/27]
 gi|28476691|gb|AAO44779.1| ribonucleotide reductase beta chain [Tropheryma whipplei str.
           Twist]
          Length = 327

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 176/310 (56%), Gaps = 4/310 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P++Y WA + Y  A  N W P E+ + +D+A +K    +T +E+  +   + +F  +E
Sbjct: 14  LKPVRYQWAMDLYEQAVANTWFPNEIQLGEDIADFK---KMTHEEKHAVTFLMSYFNPNE 70

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++ PEC  YL +Q +EEA H  +F+Y++ +  +D  E ++ + EVP
Sbjct: 71  LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREEAYSSHIEVP 130

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + ++Y + ++  +    T +  ++F+++L  + VV EG+WFY+GF   L   +
Sbjct: 131 SMARKEEFEVEYIRRMTEETLDITTTEGKRDFIRNLVAYNVVLEGIWFYSGFMAALYFRQ 190

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +I+RDESLHL FGI++I  +  ENP L T +F  + R M+     +E 
Sbjct: 191 RNLLRNFGSLIDWIVRDESLHLKFGINLILTVLEENPDLQTSDFADEIRGMIIAGVEMEE 250

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y H+ +P G +GLN+    QY++++A+RR  ++G +P +  T NP  WM+   D  +  
Sbjct: 251 EYNHDLLPNGILGLNSGYINQYVKYLADRRLEELGFDPEYNVT-NPAKWMATANDTFELV 309

Query: 334 NFFETRVTEY 343
           NFFE   T Y
Sbjct: 310 NFFEAINTSY 319


>gi|288928561|ref|ZP_06422408.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288331395|gb|EFC69979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 348

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 90/358 (25%), Positives = 162/358 (45%), Gaps = 17/358 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M N    + +   +   ++  +RM+   + ++N    ++Y WA + Y  A NN W+P E+
Sbjct: 1   MDNKLKKNALFNPQGDTDLRLRRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +     L   ER    + L F    +SL + N+  ++   ++  E    L  
Sbjct: 61  NLTQDTKDY---PLLPPAERKAYDKILSFLVFLDSLQSANLP-SLTEFITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E VHS ++ Y++ ++   E       R       K +  L    T     +     
Sbjct: 117 QAFQECVHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFYA 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           + D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 NNDKASLMKTLMANYILEGIYFYSGFMFFYNLARNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           ++I+++K E P  +T E  +    M+ E    EIA+    +     GLNA     Y++++
Sbjct: 231 NIIHEMKKEEPEYFTPEKVKVYEEMMREGVRQEIAWGQYVIGDEVQGLNAQMVNDYIRYL 290

Query: 300 ANRRCHQIG----LEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +G    LE   +  EN   W+++  +    + +FFE + T Y +   ++ D
Sbjct: 291 GNMRWRSLGFGNLLEDNIEEPEN-MRWVAQYANANMVKTDFFEAKSTAYAKSTAIEDD 347


>gi|253567022|ref|ZP_04844473.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
           3_2_5]
 gi|265764336|ref|ZP_06092904.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
           2_1_16]
 gi|15290503|gb|AAK92210.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides
           fragilis 638R]
 gi|251944146|gb|EES84655.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
           3_2_5]
 gi|263256944|gb|EEZ28290.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
           2_1_16]
 gi|301163665|emb|CBW23219.1| putative ribonucleoside-diphosphate reductase beta chain
           [Bacteroides fragilis 638R]
          Length = 349

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 157/348 (45%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   E       ++M+   + ++N    ++Y W  + Y  A NN W+P E+ +  D   +
Sbjct: 11  LFNPEGDTETRLRKMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTKDY 70

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                LT  ER    + L F    +SL +NN+   +  +++  E    L  QAF+E VHS
Sbjct: 71  ---PHLTPAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHIQAFQECVHS 126

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ S+   E       R       K +  L    T     +    ++ D   L  
Sbjct: 127 QSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGNCYNEFQENRDGFALMK 180

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E
Sbjct: 181 TLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKE 240

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T +  +    M+ E    EIA+    +     GLN      Y+ F+ N R   +G
Sbjct: 241 EPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFLGNLRWSSLG 300

Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             PL++   + P    W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 301 YTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|325268390|ref|ZP_08135022.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
           multiformis DSM 16608]
 gi|324989244|gb|EGC21195.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
           multiformis DSM 16608]
          Length = 348

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/357 (24%), Positives = 155/357 (43%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M N    + +       ++  +RM+   + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 1   MDNKLKRNTLFNPSGDTDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +     L   ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 61  NLSQDFKDY---PRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E +HS ++ Y++ ++   E       R       K +  L          +    +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P ++T +  +    M+ E    EIA+    +     GLN      Y++++
Sbjct: 231 SIILELKKEEPDMFTPDRIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290

Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +G   L+    + P    W+ +  +    + +FFE + T Y +   L  D
Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALADD 347


>gi|60682187|ref|YP_212331.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           fragilis NCTC 9343]
 gi|60493621|emb|CAH08410.1| putative ribonucleoside-diphosphate reductase beta chain
           [Bacteroides fragilis NCTC 9343]
          Length = 349

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 157/348 (45%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   E       ++M+   + ++N    ++Y W  + Y  A NN W+P E+ +  D   +
Sbjct: 11  LFNPEGDTETRFRKMIGGNTTNLNDFNNMRYQWVSDWYRQAMNNFWIPEEINLTQDTKDY 70

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                LT  ER    + L F    +SL +NN+   +  +++  E    L  QAF+E VHS
Sbjct: 71  ---PHLTPAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHIQAFQECVHS 126

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ S+   E       R       K +  L    T     +    ++ D   L  
Sbjct: 127 QSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGNCYNEFQENRDGFALMK 180

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E
Sbjct: 181 TLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKE 240

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T +  +    M+ E    EIA+    +     GLN      Y+ F+ N R   +G
Sbjct: 241 EPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFLGNLRWSSLG 300

Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             PL++   + P    W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 301 YTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|331083185|ref|ZP_08332301.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330404574|gb|EGG84114.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 347

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +V  +RM+   + ++N    ++YGW  + Y  A NN W+P E+ +  D  
Sbjct: 7   KPLFNPSGDTDVRFRRMIGGNTTNLNDFNNMRYGWVKDWYRQAMNNFWIPEEINLSQDRK 66

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +S+ + N+   I  +++  E    L  Q F+E V
Sbjct: 67  DY---GELLGKERQAYDKILSFLVFLDSIQSANLP-CIGEYITANEINLCLSIQTFQECV 122

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R       K +  L    T     +       D   L
Sbjct: 123 HSQSYSYMLDTICSPEK------RNEILYQWKTDERLLKRNTFIGELYNEFQMKKDSFTL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I Q+K
Sbjct: 177 LKVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILQLK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+TKE  Q  + ML E    EIA+ H  +     G++     +Y++++ N R   
Sbjct: 237 EEEPELFTKENIQALKEMLMEGVEQEIAWGHYVLGDDIPGISKEMITEYIKYLGNLRFTG 296

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G + ++  Y + P    W+S   +    + +FFE + T Y +   L  D
Sbjct: 297 LGFDVVYPGYEKEPESMKWVSYYSNANMVKTDFFEAKSTAYAKSTALLDD 346


>gi|53713986|ref|YP_099978.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           fragilis YCH46]
 gi|52216851|dbj|BAD49444.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides
           fragilis YCH46]
          Length = 349

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 156/348 (44%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   E       ++M+   + ++N    ++Y W  + Y    NN W+P E+ +  D   +
Sbjct: 11  LFNPEGDTETRLRKMIGGNTTNLNDFNNMRYKWVSDWYRQGMNNFWIPEEINLTQDTKDY 70

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                LT  ER    + L F    +SL +NN+   +  +++  E    L  QAF+E VHS
Sbjct: 71  ---PHLTPAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHIQAFQECVHS 126

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ S+   E       R       K +  L    T     +    ++ D   L  
Sbjct: 127 QSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGNCYNEFQENRDGFALMK 180

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E
Sbjct: 181 TLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKE 240

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T +  +    M+ E    EIA+    +     GLN      Y+ F+ N R   +G
Sbjct: 241 EPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFLGNLRWSSLG 300

Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             PL++   + P    W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 301 YTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|325859841|ref|ZP_08172971.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           denticola CRIS 18C-A]
 gi|325482767|gb|EGC85770.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           denticola CRIS 18C-A]
          Length = 348

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 87/357 (24%), Positives = 155/357 (43%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M N    + +       ++  KRM+   + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 1   MDNKLKRNTLFNPSGDTDLRLKRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +     L   ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 61  NLSQDFKDY---PRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E +HS ++ Y++ ++   E       R       K +  L          +    +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P ++T +  +    M+ E    EIA+    +     GLN      Y++++
Sbjct: 231 SIILELKKEEPDMFTPDRIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290

Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +G   L+    + P    W+ +  +    + +FFE + T Y +   L  D
Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALVDD 347


>gi|317011285|gb|ADU85032.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori SouthAfrica7]
          Length = 341

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 173/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I   +   +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  ++
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEK 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLIDEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKIYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|265756566|ref|ZP_06090772.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
           3_1_33FAA]
 gi|263233754|gb|EEZ19369.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
           3_1_33FAA]
          Length = 349

 Score =  220 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   E   ++  +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +  D   +
Sbjct: 11  LFNPEGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTKDY 70

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                L   ER    + L F    +SL +NN+   I  +++  E    L  QAF+E VHS
Sbjct: 71  ---PHLDQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHS 126

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ S+   E       R       K +  L    T     +    +  D   L  
Sbjct: 127 QSYSYMLDSICSPEK------RNEILYQWKTDEHLLKRNTFIGNCYNEFQESQDGFTLMK 180

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E
Sbjct: 181 TLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKE 240

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T +  +    M+ E    EI +    +     GLN    E Y+Q++ N R   +G
Sbjct: 241 EPDLFTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNWKMIEDYIQYLGNLRWSSLG 300

Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             PL++   + P    W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 301 FGPLYEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|304439119|ref|ZP_07399038.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372478|gb|EFM26065.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 347

 Score =  220 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 84/350 (24%), Positives = 164/350 (46%), Gaps = 19/350 (5%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +      +++  + ++N  + ++N    +KY W  + Y  A NN W+P E+ +  D+  +
Sbjct: 9   LFNENGDIDLQKRTIINGNTTNLNDFNNIKYKWTSDWYRQAMNNFWIPEEINLSQDVLDY 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K    L + E+    + L F    +S+    +   +  +++  E    L  Q+F+E++HS
Sbjct: 69  K---ILDEAEKRAFDKILSFLIYLDSIQTAQLP-NLQAYITANEINLCLSIQSFQESIHS 124

Query: 129 HTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            ++ YI+ ++   E   E+   Y    ++  +  +         +        D  +  L
Sbjct: 125 QSYSYILDTICSPEERTEILYQYINDKTLLERNKYITDQYAGFLN--------DKTKGNL 176

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I  +K
Sbjct: 177 MHALIANYILEGIYFYSGFMFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSIILDLK 236

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T+E  ++ R +L      EIA+    +     GL +   E Y++++ N R   
Sbjct: 237 KEQPELFTEEKVEEYRALLKYGVEEEIAWGKYVIGDDIQGLTSKMVEDYIKYLGNLRATN 296

Query: 307 IGLEPLFKY---TENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           +G EPL++          W+++  D+   + +FFE +VT Y + A ++ D
Sbjct: 297 LGFEPLYEGYDKEVESMKWVTQYADINLLKTDFFEAKVTAYSKSAIIEDD 346


>gi|327312835|ref|YP_004328272.1| ribonucleoside-diphosphate reductase subunit beta [Prevotella
           denticola F0289]
 gi|326946303|gb|AEA22188.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
           denticola F0289]
          Length = 348

 Score =  220 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 86/357 (24%), Positives = 155/357 (43%), Gaps = 15/357 (4%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M N    + +       ++  +RM+   + ++N    +KY W  + Y  A NN W+P E+
Sbjct: 1   MDNKLKRNTLFNPSGDTDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +     L   ER    + L F    +SL +NN+   +  +++  E    L  
Sbjct: 61  NLSQDFKDY---PRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QAF+E +HS ++ Y++ ++   E       R       K +  L          +    +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D+  L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +I ++K E P ++T +  +    M+ E    EIA+    +     GLN      Y++++
Sbjct: 231 SIILELKKEEPDMFTSDKIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290

Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            N R   +G   L+    + P    W+ +  +    + +FFE + T Y +   L  D
Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALVDD 347


>gi|194363985|ref|YP_002026595.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
           R551-3]
 gi|194346789|gb|ACF49912.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
           R551-3]
          Length = 339

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 95/321 (29%), Positives = 171/321 (53%), Gaps = 8/321 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L P++Y   ++ Y +A  N W   E+  Q D++   S   ++  ER +I R + FFA+ 
Sbjct: 17  TLRPMRYPQFYDMYRNAIKNTWTVEEINFQIDISDLHS--KMSPGERHLIHRLVAFFATG 74

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
           +S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H   +  ++ +   D  E    F   
Sbjct: 75  DSIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPDERVKAFAAV 134

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
             + SI  KA++  ++  ++ +      T++  ++FL +   F    EG++F+  FA + 
Sbjct: 135 ENIDSIKKKADFCFKWIDSIQNLK-RIETREERRQFLLNQICFAACIEGLFFFAAFAYVY 193

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  + G+A    ++ RDES H++F  + ++ I+ E P L+  + +Q    ML EA 
Sbjct: 194 YFRSRGLLNGLASGTNWVFRDESAHMDFAFECVDVIREEEPDLFDDKMKQDVYDMLAEAI 253

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
             E+ +A + +  G  G++     QY+Q  A+   H++G+E  +    NP  +M E+ D+
Sbjct: 254 ECEVQFAEDVLSGGVAGISTRDMRQYLQHCADNHFHRLGMERKYNV-RNPLSFM-ELQDV 311

Query: 330 KKEKNFFETRVTEYQQGAELK 350
           ++  NFFE R + YQ G + +
Sbjct: 312 QELTNFFERRASAYQVGVQGE 332


>gi|109947017|ref|YP_664245.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           acinonychis str. Sheeba]
 gi|109714238|emb|CAJ99246.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
           acinonychis str. Sheeba]
          Length = 341

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 173/348 (49%), Gaps = 14/348 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I   +   +V+++++       +  L  +KY WA   + +   N W   EV M DD 
Sbjct: 5   RKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDK 64

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EEA
Sbjct: 65  RDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEA 121

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E 
Sbjct: 122 LHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEEN 173

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 174 ILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINAL 233

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R  
Sbjct: 234 RNERADLFTPQLIDEVIEMFKKAVKIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLS 293

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 294 KVGIAKIYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|108563454|ref|YP_627770.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori HPAG1]
 gi|107837227|gb|ABF85096.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter
           pylori HPAG1]
          Length = 341

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 173/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I   +   +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +  +     + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|308183194|ref|YP_003927321.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori PeCan4]
 gi|308065379|gb|ADO07271.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori PeCan4]
          Length = 341

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 173/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I   +   +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|224539244|ref|ZP_03679783.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519126|gb|EEF88231.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 349

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 156/356 (43%), Gaps = 15/356 (4%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           A     + +        +  ++M+   + ++N    ++Y W  + Y  A NN W+P E+ 
Sbjct: 3   AKKLKRNALFNPSGDTEIRLRKMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEIN 62

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D   +     L + ER    + L F    +SL +NN+   I  +++  E    L  Q
Sbjct: 63  LTQDTKDY---PLLDEAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQ 118

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AF+E VHS ++ Y++ ++   E       R       K +  L    T     +    + 
Sbjct: 119 AFQECVHSQSYSYMLDTICSPEK------RNDILYQWKTDEHLLKRNTFIGNCYNEFQES 172

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D   L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL     
Sbjct: 173 QDGFTLMKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRS 232

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I ++K E P L+T +  Q    M+ E    EI +    +     GLN      Y+ ++ 
Sbjct: 233 IILELKKEEPELFTPDKVQIYENMMREGVKQEIEWGQYVIGDNIQGLNRQMIADYIHYLG 292

Query: 301 NRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           N R   +G  PL+++  + P    W+ +  +    + +FFE + T Y +   L+ D
Sbjct: 293 NLRWSSLGNPPLYEHNRKEPESMHWVLQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|261838422|gb|ACX98188.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter
           pylori 51]
          Length = 341

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 173/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +  +     + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|237749822|ref|ZP_04580302.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           bilis ATCC 43879]
 gi|229374572|gb|EEO24963.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           bilis ATCC 43879]
          Length = 351

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 92/347 (26%), Positives = 160/347 (46%), Gaps = 14/347 (4%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
            N      I       +V+++R+       + +L  +KY WA+    +   N W P EV 
Sbjct: 9   DNRVSRKKIYNPHSTESVNERRIFGGNPTAIFELNKIKYQWAYNLLRTMFANTWFPEEVN 68

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D   +     LT  E+    R L      +SL  NN+   I  +++ PE    L+RQ
Sbjct: 69  MNQDKRDYME---LTLQEKQGYDRALAQLIFMDSLQTNNLTDNINPYITCPEINMLLVRQ 125

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEE++H+ ++  ++ S+  +  E++ M+R+   + +K ++       L+     T    
Sbjct: 126 AFEESLHAQSYAVMVDSISANTDEIYQMWRKDDKLRSKNDYIADVYTDLAKNPTETNL-- 183

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
                         + EG++FY+GFA   +L R+ KM   AE  ++I RDE  HL     
Sbjct: 184 ------IKAMFANQILEGIYFYSGFAFFYTLARSGKMQNSAEMIRFIQRDEITHLTIFQQ 237

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I   + E P L+T+  Q +   M  +A  LE ++         +GL A    QY++++A
Sbjct: 238 MIISTRKERPDLFTQALQDEVMEMFRQAVDLESSWGEYITQGQILGLTAKIIRQYIEYLA 297

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQG 346
           ++R   +    L+  T+NP  W+ E ++   +  NFFE +V  Y +G
Sbjct: 298 DKRLKAVDYPILYN-TQNPIQWVDEQVNFNNQRTNFFEAKVRNYTRG 343


>gi|188527870|ref|YP_001910557.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Shi470]
 gi|188144110|gb|ACD48527.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Shi470]
 gi|308063873|gb|ADO05760.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Sat464]
          Length = 341

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 172/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 SILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|221633388|ref|YP_002522613.1| ribonucleotide-diphosphate reductase subunit beta [Thermomicrobium
           roseum DSM 5159]
 gi|221156578|gb|ACM05705.1| ribonucleoside-diphosphate reductase, beta subunit [Thermomicrobium
           roseum DSM 5159]
          Length = 328

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 114/326 (34%), Positives = 188/326 (57%), Gaps = 5/326 (1%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           +R+L        +L PL + WA+     A +N W P EVP+ DD+  W  +  L+D+ER 
Sbjct: 3   RRLLGGDPLAAVELFPLSHPWAYAHVQQAKHNTWFPEEVPLHDDVRDWHER--LSDEERR 60

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            ++  LGFF   ESLV  N++L++YR ++ PE R YL RQA+EEA H   F+Y+I +L L
Sbjct: 61  AVEMFLGFFNPMESLVTTNLLLSLYRAVTAPEARLYLARQAWEEANHVMAFEYVIKTLPL 120

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           D   +F ++ E P++ AK  +  Q  +     +    + +  Q  +++L  ++V+ EG++
Sbjct: 121 DRERVFGLHVEHPAVAAKELFQRQLAEQWLV-TPDVESVEGLQRLVRNLVGYFVILEGIF 179

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA  L+  + N + G+     ++++DESLHL+FGI +I  I  E+P + +  F ++
Sbjct: 180 FYSGFALALAFRQRNLLRGLCTIVDWVLKDESLHLSFGIHLITTILEEHPEIMSAAFGRQ 239

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            R ++  A  LE AY    +P+  +GL+A    +Y+++IA+RR  ++GL   F    NP 
Sbjct: 240 LRELILRAVELEEAYNRAVLPEPLIGLDADVLNRYVRYIADRRLEELGLPIAFG-EPNPL 298

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
            WM   +D+ +  NFFE R   Y+ G
Sbjct: 299 RWMVAQVDMPEIVNFFEARNIHYEVG 324


>gi|308184827|ref|YP_003928960.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori SJM180]
 gi|308060747|gb|ADO02643.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori SJM180]
          Length = 341

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 174/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I   +   +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E+++         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPKLINEVIEMFKKAVEIEVSWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|261839822|gb|ACX99587.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori 52]
          Length = 341

 Score =  219 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 172/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +  +     + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|160915703|ref|ZP_02077911.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991]
 gi|158432179|gb|EDP10468.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991]
          Length = 353

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 89/351 (25%), Positives = 159/351 (45%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
             P+      ++V  ++M+N  + ++N    +KY WA + Y  A NN W+P E+ +  D+
Sbjct: 12  RKPLFNEHGDIDVHLRKMINGNTTNLNDFNHMKYTWASDWYRQAMNNFWIPEEINLNQDV 71

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    L+  E+    + L F    +S+   N+   I  +++  E    L  QAF+EA
Sbjct: 72  KDYR---KLSKAEKDAYDKTLSFLIFLDSIQTANLP-NIGEYITANEVNLCLTIQAFQEA 127

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ S+           R       K +  L          +    +  D E 
Sbjct: 128 VHSQSYSYMLDSICSP------QERNAILYQWKDDPHLLARNKFIGDLYNDFMEHRDGEH 181

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     ++ ++
Sbjct: 182 LIKTLIANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSILLEL 241

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P L+T E  +  + ML      E+ +A   + +   GL       Y+ ++ N R +
Sbjct: 242 KKEEPQLFTPEHIEIYKGMLKHGVEEEVKWAEYVLGERMEGLTMEMVADYIHYLGNLRSN 301

Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
            +G   L+  Y + P    W+S   +    + +FFE + T Y + + L  D
Sbjct: 302 ALGFGSLYDGYEKEPASMEWVSMYSNANIIKTDFFEAKSTAYAKSSALVDD 352


>gi|217034470|ref|ZP_03439882.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10]
 gi|216943072|gb|EEC22549.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10]
 gi|317177841|dbj|BAJ55630.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori F16]
          Length = 341

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 171/349 (48%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIESLWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|297380266|gb|ADI35153.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori v225d]
 gi|308062365|gb|ADO04253.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Cuz20]
 gi|317180823|dbj|BAJ58609.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori F32]
 gi|332673890|gb|AEE70707.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
           pylori 83]
          Length = 341

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 172/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|317178607|dbj|BAJ56395.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori F30]
          Length = 341

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 172/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSTEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|317014473|gb|ADU81909.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Gambia94/24]
          Length = 341

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 173/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL ANN++  I   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKIYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|210135249|ref|YP_002301688.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori P12]
 gi|210133217|gb|ACJ08208.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter
           pylori P12]
          Length = 341

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 173/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL ANN++  I   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|315586979|gb|ADU41360.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
           pylori 35A]
          Length = 341

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 173/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +  +     + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|207092116|ref|ZP_03239903.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori HPKX_438_AG0C1]
          Length = 341

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 171/349 (48%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  I   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|254779643|ref|YP_003057749.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori B38]
 gi|254001555|emb|CAX29573.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
           reductase small subunit) [Helicobacter pylori B38]
          Length = 341

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 173/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I   +   +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSTEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|15644992|ref|NP_207162.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori 26695]
 gi|2500210|sp|P55983|RIR2_HELPY RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|2313466|gb|AAD07432.1| ribonucleoside diphosphate reductase, beta subunit (nrdB)
           [Helicobacter pylori 26695]
          Length = 341

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 172/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL ANN++  I   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|317182342|dbj|BAJ60126.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori F57]
          Length = 341

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 170/349 (48%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    +  K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKNKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|317012862|gb|ADU83470.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori Lithuania75]
          Length = 341

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 173/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I   +   +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  I   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPKLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|313768143|ref|YP_004061574.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599750|gb|ADQ91771.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 387

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 149/329 (45%), Gaps = 29/329 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           + + ML        + P+++   W  Y  A  ++W   E+    D+  W     L+D+E+
Sbjct: 71  ESEPMLLPTLSRFTVFPIEHENLWTLYKKAQMSNWTAEEIDFSKDMDDWNE---LSDNEK 127

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             IK  L FFA S+ +V  NI       +   E R +   Q+  E VH  T+  +I    
Sbjct: 128 HFIKYILAFFAGSDGIVFENINNNFADEIQLTEARSFYAYQSHNEMVHGETYSKLIDKYI 187

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            +  E   LF   + +P I  KA WA+++              D  + F + L   +   
Sbjct: 188 KNSSEKKQLFEAIQTIPCIERKAKWAMKW-------------FDKKRPFAERLLA-FACV 233

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG++F   F  I  L +   + G+    + I RDE +H  F +++ N +K        K 
Sbjct: 234 EGIFFSGSFCAIFWLKKRGLLPGLCFSNELISRDEGMHQEFAVELFNMLKN-------KP 286

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            Q     ++ +A  +E  +  + +P   +G+N+    +Y++++A+R   Q+G   ++  T
Sbjct: 287 SQNTIEEIIRDAVSIEKEFITDALPCSLIGMNSGKMSEYIEYVADRLSKQVGHNKIWN-T 345

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +NPF +M E I L  + NFFE RV +Y +
Sbjct: 346 KNPFDFM-ENISLDGKTNFFEKRVGDYGK 373


>gi|217032591|ref|ZP_03438080.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128]
 gi|298735909|ref|YP_003728434.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
           pylori B8]
 gi|216945727|gb|EEC24352.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128]
 gi|298355098|emb|CBI65970.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
           pylori B8]
          Length = 341

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 172/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I   +   +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  I   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|122921307|pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
           (Pv086155)
 gi|122921308|pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
           (Pv086155)
          Length = 311

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/317 (24%), Positives = 149/317 (47%), Gaps = 28/317 (8%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            +  ++    ++++L+  +D   L P+ Y   W+ Y  A  + W   E+ +  DL  ++ 
Sbjct: 19  FSDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE- 77

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L D+E+  IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T
Sbjct: 78  --KLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSET 135

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           +  +I +   DE E   LF+    +P++  KA WA ++    +S                
Sbjct: 136 YSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNS--------------FA 181

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V     EG+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ 
Sbjct: 182 ERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLEN 241

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           + P       ++  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +
Sbjct: 242 KLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECL 294

Query: 308 GLEPLFKYTENPFPWMS 324
           G   +F + +NPF WM 
Sbjct: 295 GSPKIF-HAKNPFNWMD 310


>gi|260589755|ref|ZP_05855668.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia
           hansenii DSM 20583]
 gi|260539995|gb|EEX20564.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia
           hansenii DSM 20583]
          Length = 359

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 158/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
            P+       +V  +RM+   + ++N    ++YGW    Y  A NN W+P E+ +  D  
Sbjct: 19  KPLFNPSGDTDVRFRRMIGGNTTNLNDFNNMRYGWVKGWYRQAMNNFWIPEEINLSQDRK 78

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER    + L F    +S+ + N+   I  +++  E    L  Q F+E V
Sbjct: 79  DY---GELLGKERQAYDKILSFLVFLDSIQSANLP-CIGEYITANEINLCLSIQTFQECV 134

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ ++   E       R       K +  L    T     +       D   L
Sbjct: 135 HSQSYSYMLDTICSPEK------RNEILYQWKTDERLLKRNTFIGELYNEFQMKKDSFTL 188

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             + +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I Q+K
Sbjct: 189 LKVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILQLK 248

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+TKE  Q  + ML E    EIA+ H  +     G++     +Y++++ N R   
Sbjct: 249 EEEPELFTKENIQALKEMLMEGVEQEIAWGHYVLGDDIPGISKEMITEYIKYLGNLRFTG 308

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +G + ++  Y + P    W+S   +    + +FFE + T Y +   L  D
Sbjct: 309 LGFDVVYPGYEKEPESMKWVSYYSNANMVKTDFFEAKSTAYAKSTALLDD 358


>gi|255008714|ref|ZP_05280840.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           fragilis 3_1_12]
 gi|313146449|ref|ZP_07808642.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           fragilis 3_1_12]
 gi|313135216|gb|EFR52576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
           fragilis 3_1_12]
          Length = 349

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 155/348 (44%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   E    +  ++M+   + ++N    + Y W  + Y  A NN W+P E+ +  D   +
Sbjct: 11  LFNPEGDTELRLRKMIGGNTTNLNDFNNMHYKWVSDWYRQAMNNFWIPEEINLTQDTKDY 70

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                L   ER    + L F    +SL +NN+   I  +++  E    L  QAF+E VHS
Sbjct: 71  ---PHLDKAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHS 126

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y++ S+   E       R       K +  L    T     +    +  D   L  
Sbjct: 127 QSYSYMLDSICSPEE------RNDILYQWKTDEHLLKRNTFIGNCYNEFQESQDSFTLMK 180

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++K E
Sbjct: 181 TLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKE 240

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T +  +    M+ E    EI +    +     GLN    E Y+ ++ N R   +G
Sbjct: 241 EPELFTSDRVKVYEAMMREGVKQEIEWGQYVIGDEIQGLNKKMIEDYIHYLGNLRWTSLG 300

Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             PL++   + P    W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 301 FTPLYEDNLKEPESMRWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348


>gi|297587320|ref|ZP_06945965.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna
           ATCC 53516]
 gi|297575301|gb|EFH94020.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna
           ATCC 53516]
          Length = 354

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +      + +  ++++N  + ++N    +KY W  E Y  A NN W+P E+ +  D+  +
Sbjct: 16  LFNEHGDIELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 75

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L++DE++   + L F    +SL    +   +  +++  E    L  QAF+E++HS
Sbjct: 76  R---NLSEDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHS 131

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R       K +  L          +    ++  +     
Sbjct: 132 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEEKSERNFMK 185

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I  +K E
Sbjct: 186 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 245

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T+E   + + M+ + +  EI +A   + +   GL+    E Y++++ N R   +G
Sbjct: 246 RPELFTEEKNAQYKEMIKQGSEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 305

Query: 309 LEPLFK--YTENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
              ++     E P   W+SE  D  K + +FFE + + Y + A ++ D
Sbjct: 306 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 353


>gi|15612081|ref|NP_223733.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori J99]
 gi|11387046|sp|Q9ZKC3|RIR2_HELPJ RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|4155613|gb|AAD06604.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN [Helicobacter
           pylori J99]
 gi|307637755|gb|ADN80205.1| Ribonucleotide reductase of classIa beta subunit [Helicobacter
           pylori 908]
 gi|325996356|gb|ADZ51761.1| Ribonucleotide reductase of class Ia beta subunit [Helicobacter
           pylori 2018]
 gi|325997944|gb|ADZ50152.1| Ribonucleosidase diphosphate reductase beta subunit [Helicobacter
           pylori 2017]
          Length = 341

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 173/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL ANN++  I   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E ++         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|302379704|ref|ZP_07268189.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
           magna ACS-171-V-Col3]
 gi|302312611|gb|EFK94607.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
           magna ACS-171-V-Col3]
          Length = 347

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 162/348 (46%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +      + +  +R++N  + ++N    +KY W  E Y  A NN W+P E+ +  D+  +
Sbjct: 9   LFNEHGDIELSKRRIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L++DE++   + L F    +SL    +   +  +++  E    L  QAF+E++HS
Sbjct: 69  R---NLSEDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHS 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R       K +  L          +    +   +     
Sbjct: 125 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEKKSERNFMK 178

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I  +K E
Sbjct: 179 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 238

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T+E   + + M+ +    EI +A   + +   GL+    E Y++++ N R   +G
Sbjct: 239 RPELFTEEKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 298

Query: 309 LEPLFK--YTENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
              ++     E P   W+SE  D  K + +FFE + + Y + A ++ D
Sbjct: 299 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 346


>gi|255658865|ref|ZP_05404274.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella
           multacida DSM 20544]
 gi|260849270|gb|EEX69277.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella
           multacida DSM 20544]
          Length = 347

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 163/349 (46%), Gaps = 15/349 (4%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           P+   E  ++V  +R++   + ++N    LKY W  + Y  A NN W+P E+ +  D+  
Sbjct: 8   PLFNPEGDIDVTQRRLIGGNTTNMNDFNNLKYTWTADWYRQAMNNFWIPEEINLGQDVKD 67

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           ++    L   ER    + L F    +S+ + N+   +  +++  E    L  Q+F+E VH
Sbjct: 68  YRQ---LPAAERRAYDKILSFLVFLDSVQSANLP-NVSAYITANEVDLCLTIQSFQECVH 123

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ Y++ ++   +       R+      K +  L    T     +    ++  +E   
Sbjct: 124 SQSYSYMLDTIASPDE------RQEIIFQWKDDEHLLARNTFIGDLYNEFQQEQSRENFL 177

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            + +   + EG++FY+GF    +LGR  +M G  ++ +YI RDE+ HL    +++  ++ 
Sbjct: 178 RVLIANYILEGIYFYSGFMFFYNLGRIGRMPGSVQEIRYINRDENTHLWLFRNILRDLRA 237

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E P L+T E ++  R M+ E    EIA+    +     GLN    E Y+ ++ N R   I
Sbjct: 238 EEPDLFTPEREEMMREMIREGVRQEIAWGKYAIGNEVEGLNEKMIEDYVHYLGNARAESI 297

Query: 308 GLEPLFKY-TENP--FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           GL  L++   E P    W+S+  +    + +F E R T Y +   L  D
Sbjct: 298 GLGTLYEGFEEEPSSMRWVSQYANPNFIKTDFIEGRSTAYAKSTALVDD 346


>gi|289425969|ref|ZP_06427716.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes SK187]
 gi|289153512|gb|EFD02226.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes SK187]
 gi|313763766|gb|EFS35130.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL013PA1]
 gi|313802998|gb|EFS44206.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL110PA2]
 gi|313816916|gb|EFS54630.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL059PA1]
 gi|313829718|gb|EFS67432.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL063PA2]
 gi|313839374|gb|EFS77088.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL086PA1]
 gi|314916474|gb|EFS80305.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL005PA4]
 gi|314932316|gb|EFS96147.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL067PA1]
 gi|314956590|gb|EFT00842.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL027PA1]
 gi|314959472|gb|EFT03574.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL002PA1]
 gi|314964864|gb|EFT08964.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL082PA1]
 gi|314968630|gb|EFT12728.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL037PA1]
 gi|315079174|gb|EFT51177.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL053PA2]
 gi|315100241|gb|EFT72217.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL059PA2]
 gi|315102565|gb|EFT74541.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL046PA1]
 gi|315109517|gb|EFT81493.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL030PA2]
 gi|327455890|gb|EGF02545.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL087PA3]
 gi|327458042|gb|EGF04697.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL083PA2]
 gi|328757204|gb|EGF70820.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL087PA1]
 gi|328757585|gb|EGF71201.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL025PA2]
          Length = 328

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 169/310 (54%), Gaps = 4/310 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P E+ + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADF---ARMTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + + + + ++  +    T +  Q+F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G +G+NA     Y++++A+RR  ++G EP ++   NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRVA-NPAKWMATANDTLQVV 308

Query: 334 NFFETRVTEY 343
           NFFE   T Y
Sbjct: 309 NFFEATNTSY 318


>gi|314918862|gb|EFS82693.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL050PA1]
 gi|314921071|gb|EFS84902.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL050PA3]
          Length = 328

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/310 (30%), Positives = 169/310 (54%), Gaps = 4/310 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P E+ + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADF---ARMTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + + + + ++  +    T +  ++F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTRDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G +G+NA     Y++++A+RR  ++G EP ++   NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRVA-NPAKWMATANDTLQVV 308

Query: 334 NFFETRVTEY 343
           NFFE   T Y
Sbjct: 309 NFFEATNTSY 318


>gi|169824933|ref|YP_001692544.1| ribonucleotide-diphosphate reductase subunit beta [Finegoldia magna
           ATCC 29328]
 gi|167831738|dbj|BAG08654.1| ribonucleoside-diphosphate reductase beta subunit [Finegoldia magna
           ATCC 29328]
          Length = 354

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 162/348 (46%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +      + +  ++++N  + ++N    +KY W  E Y  A NN W+P E+ +  D+  +
Sbjct: 16  LFNEHGDIELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 75

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L++DE++   + L F    +SL    +   +  +++  E    L  QAF+E++HS
Sbjct: 76  R---NLSEDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHS 131

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R       K +  L          +    +   +     
Sbjct: 132 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEKKSERNFMK 185

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I  +K E
Sbjct: 186 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 245

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T+E   + + M+ +    EI +A   + +   GL+    E Y++++ N R   +G
Sbjct: 246 RPELFTEEKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 305

Query: 309 LEPLFK--YTENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
              ++     E P   W+SE  D  K + +FFE + + Y + A ++ D
Sbjct: 306 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 353


>gi|208434985|ref|YP_002266651.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter
           pylori G27]
 gi|208432914|gb|ACI27785.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter
           pylori G27]
          Length = 341

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 172/349 (49%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL ANN++  I   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|317009697|gb|ADU80277.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori India7]
          Length = 341

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 171/349 (48%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +V+++++       +  L  +KY WA   + +   N W   EV M DD
Sbjct: 4   SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+ +E++   R L      +SL  NN++  +   +++PE    L+RQA+EE
Sbjct: 64  KRDY---LKLSVEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH +  ++ S+  +  E+++M+R    + +K ++  Q    L+        K+  +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            +        + EG++FY+GF+   +L R+ KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T +   +   M  +A  +E  +         +GL +   EQY+QF+A+ R 
Sbjct: 233 LRNERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
            ++G+  ++   ++P  W+       ++  NFFE RV+ Y +G+    D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340


>gi|157736292|ref|YP_001488975.1| ribonucleotide-diphosphate reductase subunit beta [Arcobacter
           butzleri RM4018]
 gi|157698146|gb|ABV66306.1| ribonucleoside-diphosphate reductase, beta chain [Arcobacter
           butzleri RM4018]
          Length = 339

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 92/344 (26%), Positives = 165/344 (47%), Gaps = 14/344 (4%)

Query: 11  QAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
              + + +++D+R+    SD +     +KY WA   + +   N W P EV M  D   +K
Sbjct: 7   YNPDSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTGDAKDYK 66

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               LT  E+ M    L      +SL  NN++  I  +++ PE    L RQ++EEA HS 
Sbjct: 67  ---FLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYEEANHSK 123

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
           ++  ++ S+  +   +++M++    +  K  +  +  + LS         D D   +   
Sbjct: 124 SYAVMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLSG--------DIDDRKIVLA 175

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
                + EG++FY GFA I +LG++ KM+G ++  ++I RDE  HL    ++IN ++ E 
Sbjct: 176 LFANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQNMINSVRKER 235

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           P L+T E ++  R M  +A  LE ++         +G       QY++++A+RR   +G 
Sbjct: 236 PDLFTSELEETVRAMFRKAVDLEASWGAYITQGQILGFTDGIIRQYIEYLADRRLEAVGY 295

Query: 310 EPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +  +   ++P PW+        +  NFFE  V  Y +G+    D
Sbjct: 296 KAEYGV-KHPIPWVDGYASFNDQRTNFFEGNVVNYSKGSIDFDD 338


>gi|315635423|ref|ZP_07890689.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter
           butzleri JV22]
 gi|315480181|gb|EFU70848.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter
           butzleri JV22]
          Length = 339

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 92/344 (26%), Positives = 166/344 (48%), Gaps = 14/344 (4%)

Query: 11  QAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
              + + +++D+R+    SD +     +KY WA   + +   N W P EV M  D   +K
Sbjct: 7   YNPDSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTGDAKDYK 66

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               LT  E+ M    L      +SL  NN++  I  +++ PE    L RQ++EEA HS 
Sbjct: 67  ---FLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYEEANHSK 123

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
           ++  ++ S+  +   +++M++    +  K  +  +  + LS         D D   +   
Sbjct: 124 SYAVMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLSG--------DIDDRKIVLA 175

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
                + EG++FY GFA I +LG++ KM+G ++  ++I RDE  HL    ++IN ++ E 
Sbjct: 176 LFANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQNMINSVRKER 235

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           P L+T+E ++  R M  +A  LE ++         +G       QY++++A+RR   +G 
Sbjct: 236 PDLFTQELEETVRAMFRKAVDLEASWGAYITQGQILGFTDGIIRQYIEYLADRRLEAVGY 295

Query: 310 EPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
           +  +   ++P PW+        +  NFFE  V  Y +G+    D
Sbjct: 296 KAEYGV-KHPIPWVDGYASFNDQRTNFFEGNVVNYSKGSIDFDD 338


>gi|50843560|ref|YP_056787.1| ribonucleotide-diphosphate reductase subunit beta
           [Propionibacterium acnes KPA171202]
 gi|282854887|ref|ZP_06264221.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes J139]
 gi|289427904|ref|ZP_06429608.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes J165]
 gi|295131638|ref|YP_003582301.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes SK137]
 gi|50841162|gb|AAT83829.1| ribonucleoside-diphosphate reductase beta chain [Propionibacterium
           acnes KPA171202]
 gi|282582033|gb|EFB87416.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes J139]
 gi|289158787|gb|EFD06987.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes J165]
 gi|291376691|gb|ADE00546.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes SK137]
 gi|313771782|gb|EFS37748.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL074PA1]
 gi|313808408|gb|EFS46875.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL087PA2]
 gi|313810605|gb|EFS48319.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL083PA1]
 gi|313813765|gb|EFS51479.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL025PA1]
 gi|313818171|gb|EFS55885.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL046PA2]
 gi|313821029|gb|EFS58743.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL036PA1]
 gi|313823899|gb|EFS61613.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL036PA2]
 gi|313827161|gb|EFS64875.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL063PA1]
 gi|313831646|gb|EFS69360.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL007PA1]
 gi|313834800|gb|EFS72514.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL056PA1]
 gi|314924366|gb|EFS88197.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL001PA1]
 gi|314927054|gb|EFS90885.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL036PA3]
 gi|314961874|gb|EFT05975.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL002PA2]
 gi|314965892|gb|EFT09991.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL082PA2]
 gi|314974996|gb|EFT19091.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL053PA1]
 gi|314977908|gb|EFT22002.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL045PA1]
 gi|314979603|gb|EFT23697.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL072PA2]
 gi|314981613|gb|EFT25706.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL110PA3]
 gi|314984684|gb|EFT28776.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL005PA1]
 gi|314988338|gb|EFT32429.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL005PA2]
 gi|314990428|gb|EFT34519.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL005PA3]
 gi|315082361|gb|EFT54337.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL078PA1]
 gi|315083809|gb|EFT55785.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL027PA2]
 gi|315087306|gb|EFT59282.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL002PA3]
 gi|315089724|gb|EFT61700.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL072PA1]
 gi|315092253|gb|EFT64229.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL110PA4]
 gi|315094826|gb|EFT66802.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL060PA1]
 gi|315095599|gb|EFT67575.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL038PA1]
 gi|315104692|gb|EFT76668.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL050PA2]
 gi|315107754|gb|EFT79730.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL030PA1]
 gi|327326613|gb|EGE68401.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL096PA3]
 gi|327332877|gb|EGE74609.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL096PA2]
 gi|327335278|gb|EGE76988.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL097PA1]
 gi|327447704|gb|EGE94358.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL043PA2]
 gi|327448579|gb|EGE95233.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL043PA1]
 gi|327449568|gb|EGE96222.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL013PA2]
 gi|328757395|gb|EGF71011.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL020PA1]
 gi|328762002|gb|EGF75508.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL099PA1]
 gi|332676502|gb|AEE73318.1| ribonucleoside-diphosphate reductase subunit beta
           [Propionibacterium acnes 266]
          Length = 328

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 169/310 (54%), Gaps = 4/310 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P E+ + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADF---ARMTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + + + + ++  +    T +  Q+F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G +G+NA     Y++++A+RR  ++G EP ++   NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRVV-NPAKWMATANDTLQVV 308

Query: 334 NFFETRVTEY 343
           NFFE   T Y
Sbjct: 309 NFFEATNTSY 318


>gi|71033209|ref|XP_766246.1| ribonucleotide-diphosphate reductase small subunit [Theileria parva
           strain Muguga]
 gi|68353203|gb|EAN33963.1| ribonucleotide-diphosphate reductase small subunit, putative
           [Theileria parva]
          Length = 308

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 39/323 (12%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+ Y   WE Y  A  + W   E+    D   W     L  DER 
Sbjct: 7   EEFLLNRNPNRTSLFPIVYPEFWEWYKKAQASFWTAEEIDFSMDYNHWH---RLNKDERH 63

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+ L   R +  PE + +   Q   E +HS T+  +I +   
Sbjct: 64  FITNVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETYSLLIENYVK 123

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           DE E   LF     + ++  KANWA ++                D+    +  V Y   E
Sbjct: 124 DEAEKRRLFMAIETIDAVKDKANWAKKWI--------------TDENSFAERIVAYAAVE 169

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G+ F   F  +  L +   M G+    + I RDE LH +FG  + + +K + P       
Sbjct: 170 GILFSGSFCALFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYHNLKHKLP------- 222

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNA----------PSCEQYMQFIANRRCHQI 307
           ++  + ++ EA ++E +Y  +++P   +G+N+              QY++F+A+R    +
Sbjct: 223 EEAVQQIIKEAVVVERSYICDSLPCDLIGMNSRKKILTHCLIELMTQYIEFVADRLLQAL 282

Query: 308 GLEPLFKYTENPFPWMSEVIDLK 330
           G+ P++  T NPF WM ++I ++
Sbjct: 283 GVRPVYNVT-NPFDWM-QLISVQ 303


>gi|319902178|ref|YP_004161906.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108]
 gi|319417209|gb|ADV44320.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108]
          Length = 347

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 86/351 (24%), Positives = 156/351 (44%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
            + +        +  +RM+   + ++N    ++Y W  + Y  A NN W+P E+ +  D 
Sbjct: 6   RNALFNPSGDTEILHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT 65

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     L   ER+   + L F    +SL +NN+   +  +++  E    L  QAF+E 
Sbjct: 66  KDY---PLLDKAERVAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHIQAFQEC 121

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           VHS ++ Y++ S+   E       R       K +  L    T     +    +  +   
Sbjct: 122 VHSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLKRNTFIGNCYNEFQESQNGFA 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    +   + EG++FY+GF    +L R  KM G A++ +YI RDE+ HL    ++I ++
Sbjct: 176 LVKTLIANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIILEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E P L+  +  +    M+ E    EIA+    +     GL+    E Y+ ++ N R  
Sbjct: 236 KKEEPELFVPDKVKVYEEMMREGVKQEIAWGQYVIGDNIQGLSRKMLEDYIHYLGNLRWK 295

Query: 306 QIGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +G  PL++  +       W+S+  +    + +FFE + T Y +   L+ D
Sbjct: 296 SLGYAPLYEDNQTEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 346


>gi|303234233|ref|ZP_07320879.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
           magna BVS033A4]
 gi|302494774|gb|EFL54534.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
           magna BVS033A4]
          Length = 347

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 162/348 (46%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +      + +  ++++N  + ++N    +KY W  E Y  A NN W+P E+ +  D+  +
Sbjct: 9   LFNEHGDIELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L++DE++   + L F    +SL    +   +  +++  E    L  QAF+E++HS
Sbjct: 69  R---NLSEDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHS 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       R       K +  L          +    +   +     
Sbjct: 125 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEKKSERNFMK 178

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     +I  +K E
Sbjct: 179 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 238

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T+E   + + M+ +    EI +A   + +   GL+    E Y++++ N R   +G
Sbjct: 239 RPELFTEEKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 298

Query: 309 LEPLFK--YTENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
              ++     E P   W+SE  D  K + +FFE + + Y + A ++ D
Sbjct: 299 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 346


>gi|131840053|ref|YP_001096062.1| ORF23 [Cyprinid herpesvirus 3]
 gi|84181618|gb|ABC55221.1| hypothetical protein [Cyprinid herpesvirus 3]
 gi|109706628|gb|ABG42854.1| ORF23 [Cyprinid herpesvirus 3]
 gi|129560539|dbj|BAF48834.1| ribonucleotide reductase small chain [Cyprinid herpesvirus 3]
          Length = 335

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 93/334 (27%), Positives = 156/334 (46%), Gaps = 27/334 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   +    L  +++   W  Y  A  ++W   E+ +  D A W+S   L+++E+  
Sbjct: 14  EPLLAPSNSRFTLDVIEHQDIWSMYKKAQFSNWTAEEIDLAKDTAGWES---LSENEKFF 70

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           +K  L FFA+S+ +V  N+     + +   E R +   Q   E VHS  +  ++ +  LD
Sbjct: 71  LKNILAFFAASDGIVNENLATRFMKEVQYFEARCFYGFQIAIENVHSEVYAKLLNTYILD 130

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LF     +P I  KA+WAL + ++             D  F + L  F  V EG
Sbjct: 131 PVERNGLFKAMETMPCIKKKADWALNWIES------------PDATFGERLVAFTAV-EG 177

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   + +      P       +
Sbjct: 178 IFFSGAFASIFWLKQKVSMPGLTFSNELISRDEGLHRDFACLLFSSHLRHKP------SK 231

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++ R ++ EA  +E  +  +++P   VG+N     +Y+Q++A+    Q+GL  L+  T  
Sbjct: 232 ERVRAIITEAVEIEKEFLTQSLPVSLVGMNHDLMCKYIQYVADHLLCQMGLSRLYN-TPC 290

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           PF +M E I L+ + NFFE RV +YQ       D
Sbjct: 291 PFDFM-ENISLEGKTNFFEKRVADYQVKTTSTVD 323


>gi|327328671|gb|EGE70431.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL103PA1]
          Length = 328

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 169/310 (54%), Gaps = 4/310 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P E+ + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADF---ARMTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + + + + ++  +    T +  Q+F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G +G+NA     Y++++A+RR  ++G EP ++   NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRIV-NPAKWMATANDTLQVV 308

Query: 334 NFFETRVTEY 343
           NFFE   T Y
Sbjct: 309 NFFEATNTSY 318


>gi|269963257|ref|ZP_06177590.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3]
 gi|269832005|gb|EEZ86131.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3]
          Length = 310

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 93/328 (28%), Positives = 150/328 (45%), Gaps = 30/328 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           +   L P++Y   W+ Y +     W   E+    DLA       LT+ E+  I+  L FF
Sbjct: 5   NKFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLAD---LAKLTEGEKHFIRHVLAFF 61

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LF 146
           A SE ++  N++   Y  +   E R +L  QAF E +H+ T+   + +   D  E   LF
Sbjct: 62  AQSEGMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERLF 121

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           N    VP++  KA W +++  +             D+     L  F +V EG++F   F 
Sbjct: 122 NAIENVPTVKRKAEWVMKWISS-------------DKTLAMRLIAFGLV-EGLFFAGSFC 167

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I    +   + G+A     I RDE LH +F   +   +         K  QQ+   +  
Sbjct: 168 AIYYFRKRGLLAGLAASNDLIARDEGLHFSFSALLFKTLGQ------GKVTQQEFEEICR 221

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           EA  +E  +  E +P   +G+NA    QY++  A+      G  P+F   ENPF +M  +
Sbjct: 222 EAVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIAGLFGFTPIFG-AENPFDYM-RL 279

Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352
           +D++ + NFFE RVTEY++    +L +D
Sbjct: 280 LDMEGKTNFFEKRVTEYKRPQDRQLSFD 307


>gi|313836278|gb|EFS73992.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL037PA2]
 gi|314928743|gb|EFS92574.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL044PA1]
 gi|314971220|gb|EFT15318.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL037PA3]
 gi|328906508|gb|EGG26283.1| ribonucleotide-diphosphate reductase subunit beta
           [Propionibacterium sp. P08]
          Length = 324

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 98/310 (31%), Positives = 170/310 (54%), Gaps = 8/310 (2%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P EV + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYPWAYDLYNQAVANTWFPNEVQLDEDLADF---ARMTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + +++ + ++  +    T +  Q+F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVEFIKRVTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPDIATDEFAVEIHDMILKGVEMEA 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G  G+NA     Y++++A+RR  ++GLEP +    NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGIPGMNAD----YVKYLADRRLEELGLEPEYHVA-NPAKWMATANDTLQLV 304

Query: 334 NFFETRVTEY 343
           NFFET  T Y
Sbjct: 305 NFFETTNTSY 314


>gi|313793687|gb|EFS41718.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL110PA1]
 gi|327456018|gb|EGF02673.1| ribonucleoside-diphosphate reductase, beta subunit
           [Propionibacterium acnes HL092PA1]
          Length = 328

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 168/310 (54%), Gaps = 4/310 (1%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+ Y WA++ Y  A  N W P E+ + +DLA +     +T DE   +   + +F  +E
Sbjct: 13  LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADF---ARMTPDEHHALTHLMSYFNPNE 69

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            LV   +   +Y +++  EC  YL +Q +EEA H   F+Y++ +  +D  E +  +  VP
Sbjct: 70  LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
           S+  K  + + + + ++  +    T +  Q+F+++L  + ++ EG+WFY+GF   LS  +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +        +++RDESLHL FG+++I  +  ENP + T EF  +   M+ +   +E 
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            Y  + +P+G  G+NA     Y++++A+RR  ++G EP ++   NP  WM+   D  +  
Sbjct: 250 QYNRDMLPRGIRGMNADYVNDYVKYLADRRLEELGFEPEYRVA-NPAKWMATANDTLQVV 308

Query: 334 NFFETRVTEY 343
           NFFE   T Y
Sbjct: 309 NFFEATNTSY 318


>gi|299144102|ref|ZP_07037182.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298518587|gb|EFI42326.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 346

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 85/352 (24%), Positives = 158/352 (44%), Gaps = 15/352 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               +      V +  ++M+N  + ++N    +KY W  + Y +  NN W+P E+ M  D
Sbjct: 4   NRKALFNERGDVELTKRKMINGNTTNLNDFNNIKYTWVSDMYRTMMNNFWIPEEINMNQD 63

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  ++    L   E+    + L F    +S+   N+   I  + +  E    L  QA++E
Sbjct: 64  IKDYR---NLDFHEKKAYDKILSFLIFLDSIQTANLP-NISDYTTANEVNLILTIQAYQE 119

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HS ++ YI+ ++   E       R       + +  L          +    ++  +E
Sbjct: 120 AIHSQSYSYILDTIASPEE------RTEILYQWRDDEHLLNRNKFIGNIYNDFVENHTKE 173

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 +   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL    ++I +
Sbjct: 174 TYMKTVMGNYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRNIIQE 233

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +K E   L+T+E   + + ML E    EI +    +     G+ A   + Y++++ N R 
Sbjct: 234 LKKEEVELFTEERINEYKCMLMEGVRQEIEWGQYVIGDNIQGITAQMVKDYIEYLGNLRS 293

Query: 305 HQIGLEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             IG   LF       N   W+SE  +  + + +FFE +V+ Y + +  + D
Sbjct: 294 RSIGFGNLFDRNIEEPNSMKWVSEYSNPNEIKTDFFEGKVSAYSKSSVFEDD 345


>gi|319942042|ref|ZP_08016361.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804426|gb|EFW01304.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella
           wadsworthensis 3_1_45B]
          Length = 344

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 88/325 (27%), Positives = 147/325 (45%), Gaps = 19/325 (5%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
              +   P +Y WA+E ++ +   HW+ TEVPM +D+  ++    LTD ER  + + L F
Sbjct: 28  ESRDYYKPFQYPWAYEAFMQSEQMHWLWTEVPMLEDVKDYQQ--KLTDSERDFLTKILRF 85

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
           F   +  V+   V +       PE R  L   A  EAVH   + ++I +LGL E  ++N 
Sbjct: 86  FTQGDIDVSGAYVNSYLPRFKQPEVRMMLSSFAAREAVHIAAYSHLIETLGLPES-IYNE 144

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           + +  ++ AK ++  +  +                +    +  F    EGM  ++ F  +
Sbjct: 145 FLQYEAMAAKHDFFNEVCR-------------DKGDLAAQIAAFSAFTEGMQLFSSFVML 191

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           L+  R   M G+ +   + + DE+LH      +  +   ENP LWT E + K   +    
Sbjct: 192 LNFTRCGTMKGMGQIIAWSIADETLHTESMTKIFREYITENPELWTDELKAKIYGIAEVM 251

Query: 269 TLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             LE  +         +  L       Y+++IA+RR   +GL+ +FK T NP PW+  ++
Sbjct: 252 VDLEDKFIDLAFGVSEMKRLTREDVRSYIRYIADRRLMGLGLKGIFKSTTNPLPWVDAML 311

Query: 328 DLKKEKNFFETRVTEYQQGA-ELKW 351
                 NFFE RV +Y +GA    W
Sbjct: 312 -GVTHTNFFENRVVDYAKGALTGSW 335


>gi|269105083|ref|ZP_06157778.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160718|gb|EEZ39216.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 310

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 152/328 (46%), Gaps = 30/328 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           +   L P++Y   W+ Y +     W   E+    DLA       LT+ E+  I+  L FF
Sbjct: 5   NKFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLAD---LAKLTEGEKHFIRHVLAFF 61

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LF 146
           A SE ++  N++   Y  +   E R +L  QAF E +H+ T+   + +      E   LF
Sbjct: 62  AQSEGMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPAVEERERLF 121

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           N    VP++  KA W +++  +             D+     L  F +V EG++F   F 
Sbjct: 122 NAIENVPTVKRKAEWVMKWISS-------------DKPLTMRLIAFGLV-EGLFFAGSFC 167

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I    + + + G+A     I RDE LH +F   +   +         K  QQ+   +  
Sbjct: 168 AIYYFRKRSLLAGLAASNDLIARDEGLHFSFSALLFKTLGQ------GKVTQQEFEEICR 221

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           EA  +E  +  E +P   +G+NA    QY++  A+      G +P+F Y +NPF +M  +
Sbjct: 222 EAVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIAGLFGFDPIF-YAKNPFDYM-RL 279

Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352
           +D++ + NFFE RVTEY++    +L +D
Sbjct: 280 LDMEGKTNFFEKRVTEYKRPQDRQLSFD 307


>gi|292658982|gb|ADE34370.1| ribonucleotide reductase small chain [Turbot reddish body
           iridovirus]
          Length = 312

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 147/322 (45%), Gaps = 28/322 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D   L P      W  Y  A  + W   EV +  D+  W   + LT+ ER  +   L FF
Sbjct: 2   DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58

Query: 90  ASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146
           A ++ +V +N+V    + L   PE R +   +   E +H+  +  +I +L   E +  LF
Sbjct: 59  AMADGIVGDNLVCNFAKELDHIPEARAFYGFRVAMENIHAEMYTQLIITLVAKENQAALF 118

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           +   ++P + AKA WA Q+      P             +    + +   EG+ F   FA
Sbjct: 119 SAAEDMPCVKAKAQWAAQWLNATHKP-------------IATRLLAFAAVEGVMFSGSFA 165

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I  L + + M G+A   + I RDE LH +F   +  Q+         K  Q+ +  ++ 
Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMAN-------KPSQEDAHQIIS 218

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           +A  +E A+  E +    +G+N+ S   Y+QF+A+R    +G   ++    NPF +M   
Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMRLYIQFVADRLLDALGYAKMYNVA-NPFDFMD-N 276

Query: 327 IDLKKEKNFFETRVTEYQQGAE 348
           I ++ + NFFE RV+EYQ+   
Sbjct: 277 ISIEGKTNFFERRVSEYQRMGV 298


>gi|282174133|ref|YP_003358235.1| ORF96 [Anguillid herpesvirus 1]
 gi|281308976|gb|ADA57859.1| ORF96 [Anguillid herpesvirus 1]
          Length = 328

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 87/327 (26%), Positives = 149/327 (45%), Gaps = 26/327 (7%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+  ++ +   P++    W  Y +A   +W   EV +  D+  W+ +  L  DER  
Sbjct: 7   EPLLDPANNRDVTFPIREHAIWAMYKTAQAANWSAEEVDLAQDVTHWEKR--LNKDERHF 64

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+++ LV  N+     + +   E   +   Q   E VH+  +  +I +L  D
Sbjct: 65  ISHVLAFFAAADGLVNANLGQRFTQEVQYLEATYFYNFQMAIENVHAEMYSKLIATLIKD 124

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P I  KA WA ++T             D +  F + L  F  V EG
Sbjct: 125 VKEQDRLFNAVERMPCIAKKAEWAKRWTH------------DTNASFGERLVAFAAV-EG 171

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L     M G+    ++I RDE LH +F   +     +  P        
Sbjct: 172 IFFSGAFAAIFWLKPRGIMPGLIMSNEFISRDEGLHCDFACLLFKDHILGKPGY------ 225

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   ++ EA  +E  +  E +P   +G+N      Y++F+A+R    +G    +   +N
Sbjct: 226 ERVSQIVTEAVEIEKEFLSEALPVRLLGINCEQMCSYIEFVADRLLAALGFPKRYHV-KN 284

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           PF +M E I ++ + NFFE  V++Y++
Sbjct: 285 PFGFM-ESISMEGKTNFFEKNVSQYKK 310


>gi|322378346|ref|ZP_08052803.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           suis HS1]
 gi|322379688|ref|ZP_08054002.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           suis HS5]
 gi|321147887|gb|EFX42473.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           suis HS5]
 gi|321149232|gb|EFX43675.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           suis HS1]
          Length = 342

 Score =  215 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 88/344 (25%), Positives = 165/344 (47%), Gaps = 14/344 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I   + +  V D+++       +  L  +KY WA + + +   N W P EV M  D
Sbjct: 5   SRKKIYNPQSQEQVSDRQIFGGNPTSMFDLNKIKYPWASKLWKTMLTNTWFPEEVSMHGD 64

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              +     L+  E++   R L      +SL  NN++  I   +++PE    L+RQA+EE
Sbjct: 65  KNHY---LHLSPQEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEE 121

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A+HSH++  ++ S+  +   ++ M+R   ++  K +   Q    LS+        +  + 
Sbjct: 122 ALHSHSYAVMVESISANSDSIYEMWRTDVALKNKNDCIAQIYMELSN--------NPTEY 173

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L        + EG++FY+GF+   +L R+ +M+G A+  ++I RDE  HL+   ++IN 
Sbjct: 174 NLLKALFANQILEGIYFYSGFSFFYALARSGRMLGSAQMIRFIQRDELTHLHLFQNMINT 233

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L++ E   +   M  +A  LE A+         + L+      Y +++A+ R 
Sbjct: 234 LRKERSDLFSPELIAEVNEMFKQAVDLESAWGAYITQGEMLDLSPQILRTYTEYLADTRL 293

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGA 347
             +GL  L+  ++NP  W+ +  +      NFFE +V+ Y +G+
Sbjct: 294 AVVGLPKLYN-SQNPIKWVDQFANFNSHRSNFFEAKVSNYSKGS 336


>gi|310831442|ref|YP_003970085.1| putative ribonucleoside-diphosphate reductase small subunit
           [Cafeteria roenbergensis virus BV-PW1]
 gi|309386626|gb|ADO67486.1| putative ribonucleoside-diphosphate reductase small subunit
           [Cafeteria roenbergensis virus BV-PW1]
          Length = 326

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 87/329 (26%), Positives = 153/329 (46%), Gaps = 29/329 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L + +    + P+KY   W+ Y       W   E+    D   +K    L  DE+ 
Sbjct: 7   NEELLKSENSRYTVFPIKYHKIWDLYKKMEAAFWTAEEIDWSKDKHDFK---KLNQDEQR 63

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FF++S+++V  N+   +   +   E +     Q   E +HS  +   I ++  
Sbjct: 64  FIKYVLAFFSASDTIVNINLGERLSHEVQPLEAKIAYTFQMMMEGIHSEVYALQIDNIIE 123

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   + N    VP I AK +W L++               +++ F   +    V+ E
Sbjct: 124 DVQERKDILNSIETVPCIKAKTDWMLKW-------------VKSEESFATRMVAQ-VISE 169

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   F  I  L   N M G+    + I RDE +H ++ I + + ++ +         
Sbjct: 170 GLFFSGSFCAIFWLKNKNIMPGLISSNELIARDEGMHCDYSIMLYHMLQNKLS------- 222

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           Q+K + M  +A   E  +  E++P   +G+NA   EQY++F+A++   ++G   +FK   
Sbjct: 223 QEKIQQMFKDAVETERIFICESLPCSLLGMNADLMEQYIKFVADQLIIKLGYNKIFKVD- 281

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           NPF WM E I ++ + NFFE R T+YQ+ 
Sbjct: 282 NPFTWM-EAISIEGKTNFFEHRPTQYQRA 309


>gi|306819883|ref|ZP_07453537.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304552130|gb|EFM40067.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 347

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 88/351 (25%), Positives = 164/351 (46%), Gaps = 15/351 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              +      + ++ ++M+N  + ++N    +KY W  + Y  A NN W+P E+ +  D+
Sbjct: 6   RKQLFNENGDIELNKRKMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLTQDI 65

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    L+ +E+    + L F    +S+   N+   I  +++  E    L  QA++EA
Sbjct: 66  KDYR---KLSKEEKNAYDKILSFLVFLDSIQTANLP-NIGEYITANEVNLCLTIQAYQEA 121

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           +HS ++ YI+ ++   E       R       K +  L          +     D     
Sbjct: 122 IHSQSYGYILDTICSPEE------RTNILYQWKDDELLLARNKFIGDLYNEFYYDRSDFN 175

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V   + EG++FY+GF    SLGR  KM G  ++ +YI RDE+ HL     ++ ++
Sbjct: 176 LVKTAVANYILEGIYFYSGFMFFYSLGRIGKMPGTVQEIRYINRDENTHLWLFRSILLEL 235

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K E  H++T+E     R M+ +    EI +A   +     GL+    E Y++++ N RC 
Sbjct: 236 KKEEAHIFTQENINLFRNMIKQGVEEEIRWAKYAIGDNIQGLSMSMIEDYLKYLGNLRCK 295

Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            +G + +++ Y + P    W+SE  D    + +FFE +V+ Y +   ++ D
Sbjct: 296 GLGFDNIYEGYEKEPESMSWVSEYSDPNAIKTDFFEAKVSAYAKSTVIEDD 346


>gi|227498392|ref|ZP_03928542.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
 gi|226903854|gb|EEH89772.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
          Length = 342

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+   + ++ +   +KY WA   Y +  NN W+P E+ + +D+  +     LTD ER   
Sbjct: 18  MIGGNTTNLREWNRIKYDWANTLYRTMLNNFWIPEEISLNEDIKQF---PYLTDSERRAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + + F    +S+ + N+   I R+++ PE    L  QAF+E +H+ ++ YI+ ++    
Sbjct: 75  DKIISFLNFLDSVQSENLP-NISRYITAPEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              ++++ +R   ++  +  +     Q  S         D ++       V   + EG++
Sbjct: 134 TRDKIYDEWRTDSTLLERNRFIADAYQRFSD--------DPNEGNFLHTIVANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    +++ +++ E P L+TKE    
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLILFQNILRELRHERPDLFTKEQDAH 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
              M+ +    EI +         +GLN    E+Y++++AN R   IGL PL+   ++NP
Sbjct: 246 IADMIRQGAENEIKWGQYITDDKILGLNNGLIEKYIKYLANIRLEAIGLAPLYPEISQNP 305

Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
             W+    +L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIESFSNLNGTKTDFFEAKVTNYTKAAAFDFD 339


>gi|27923845|sp|Q9QTF2|RIR2_RSIV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|5688956|dbj|BAA82755.1| ribonucleotide reductase small subunit [Red sea bream iridovirus]
 gi|327396894|dbj|BAK14260.1| ribonucleotide diphosphate reductase small subunit [Red sea bream
           iridovirus]
          Length = 312

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 89/322 (27%), Positives = 148/322 (45%), Gaps = 28/322 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D   L P      W  Y  A  + W   EV +  D+  W   + LT+ ER  +   L FF
Sbjct: 2   DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58

Query: 90  ASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146
           A ++ +V +N+V    + L   PE R +   Q   E +H+  +  +I +L   E +  LF
Sbjct: 59  AMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALF 118

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           +   ++P + AKA WA Q+      P             +    + +   EG+ F   FA
Sbjct: 119 SAAEDMPCVKAKAQWAAQWLNATHKP-------------IATRLLAFAAVEGVMFSGSFA 165

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I  L + + M G+A   + I RDE LH +F   +  Q+         K  Q  +  ++ 
Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMAN-------KPCQDDAHQIIS 218

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           +A  +E A+  E +    +G+N+ S + Y+QF+A+R    +G   ++  + NPF +M   
Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYNVS-NPFDFMD-N 276

Query: 327 IDLKKEKNFFETRVTEYQQGAE 348
           I ++ + NFFE RV+EYQ+   
Sbjct: 277 ISIEGKTNFFERRVSEYQRMGV 298


>gi|56555145|gb|AAV98100.1| RR2 protein [Shrimp white spot syndrome virus]
          Length = 328

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 85/326 (26%), Positives = 150/326 (46%), Gaps = 28/326 (8%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           V+     +     +     P+ +   WE Y       W   E+  + D   W+    LT 
Sbjct: 28  VDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 84

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
           DE+  I + L FFASS+ +V  N+   + +    PE R +   Q   E++H + +  +I 
Sbjct: 85  DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 144

Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            L  DE +   LFN  +  P+I  K  WA+ + Q+ +  +              +L V +
Sbjct: 145 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNNDLA--------------ELIVAF 190

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG++F   FA I  +     + G+    ++I RDE LH +F   ++ +  ++ P   
Sbjct: 191 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 247

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +++   ++ EA  +E  +   ++P   VG+N     QY++F+A++   ++GLE  +
Sbjct: 248 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 304

Query: 314 KYTENPFPWMSEVIDLKKEKNFFETR 339
             T NPFP+M   I L+ + NFFE R
Sbjct: 305 NVT-NPFPFMD-NISLENKTNFFEKR 328


>gi|227541|prf||1706181A ribonucleotide reductase
          Length = 290

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 141/302 (46%), Gaps = 28/302 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           + W   EV +  D+  W+S   L  +ER  I   L FFA+S+ +V  N+V    + +   
Sbjct: 1   SFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQIT 57

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168
           E R +   Q   E +HS  +  +I +   D  E   LFN    +P +  KA+WAL++   
Sbjct: 58  EARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIG- 116

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
                         +    +  V +   EG++F   FA I  L +   M G+    + I 
Sbjct: 117 ------------DKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 164

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           RDE LH +F   +   +         K  +++ R ++  A  +E  +  E +P   +G+N
Sbjct: 165 RDEGLHCDFACLMFKHLV-------HKPSEERVREIIINAVRIEQEFLTEALPVKLIGMN 217

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
               +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV EYQ+   
Sbjct: 218 CTLMKQYIEFVADRLMLELGFSKVFRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGV 275

Query: 349 LK 350
           + 
Sbjct: 276 MS 277


>gi|163801385|ref|ZP_02195284.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp.
           AND4]
 gi|159174874|gb|EDP59674.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp.
           AND4]
          Length = 310

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 149/328 (45%), Gaps = 30/328 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           +   L P++Y   W+ Y +     W   E+    DL        LT+ E+  I+  L FF
Sbjct: 5   NKFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLPD---LVKLTEGEKHFIRHVLAFF 61

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LF 146
           A SE ++  N++   Y  +   E R +L  QAF E +H+ T+   + +   D  E   LF
Sbjct: 62  AQSEGMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERLF 121

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           N    VP++  KA W +++  +             D+     L  F +V EG++F   F 
Sbjct: 122 NAIENVPTVQRKAQWVMKWISS-------------DKPLAMRLIAFGLV-EGLFFAGSFC 167

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I    +   + G+A     I RDE LH +F   +   +         K  QQ+   +  
Sbjct: 168 AIYYFRKRGLLAGLAASNDLIARDEGLHFSFSALLFKTLGQ------GKVTQQEFEEICR 221

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           EA  +E  +  E +P   +G+NA    QY++  A+      G  P F  +ENPF +M  +
Sbjct: 222 EAVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIADLFGFNPAFG-SENPFDYM-RL 279

Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352
           +D++ + NFFE RVTEY++    +L +D
Sbjct: 280 LDMEGKTNFFEKRVTEYKRPQDRQLSFD 307


>gi|242012701|ref|XP_002427066.1| Ribonucleoside-diphosphate reductase M2 subunit, putative
           [Pediculus humanus corporis]
 gi|212511324|gb|EEB14328.1| Ribonucleoside-diphosphate reductase M2 subunit, putative
           [Pediculus humanus corporis]
          Length = 304

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 129/304 (42%), Gaps = 26/304 (8%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
              +  N + + +L        + P+++   W  Y  A  + W   EV +  DL  W+  
Sbjct: 22  NDSRVFNKEIEPLLKENIKRFVIFPIEFPDIWHMYKKAEASFWTVEEVDLSKDLEHWE-- 79

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L   ER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E VHS  +
Sbjct: 80  -RLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVSEARCFYGFQIAMENVHSEMY 138

Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +   +  E   LFN    +P +  KA+WAL++                      +
Sbjct: 139 SLLIDTYIKNPTEKHFLFNAIETMPCVKKKADWALKWI-------------SHKTATFAE 185

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +       
Sbjct: 186 RVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK----- 240

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             ++  K  + +   ++ +A  +E  +  E +P   +G+N    ++Y++F+A+R   ++G
Sbjct: 241 --YVVQKPTEDEICDIIKDAVAIEQEFLTEALPVNLIGMNCSLMKKYIEFVADRLLVELG 298

Query: 309 LEPL 312
            + +
Sbjct: 299 CKKV 302


>gi|50237508|gb|AAT71841.1| ribonucleotide reductase small chain [Rock bream iridovirus]
          Length = 312

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 147/322 (45%), Gaps = 28/322 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D   L P      W  Y  A  + W   EV +  D+  W   + LT+ ER  +   L FF
Sbjct: 2   DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58

Query: 90  ASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146
           A ++ +V +N+V    + L   PE R +   Q   + +H+  +  +I +L   E +  LF
Sbjct: 59  AMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAMKNIHAEMYTQLIITLVAKENQAALF 118

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           +   ++P + AKA WA Q+      P             +    + +   EG+ F   FA
Sbjct: 119 SAAEDMPCVKAKAQWAAQWLNATHKP-------------IATRLLAFAAVEGVMFSGSFA 165

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I  L + + M G+A   + I RDE LH +F   +  Q+  +         Q  +  ++ 
Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMANK-------PCQDDAHEIIS 218

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           +A  +E A+  E +    +G+N+ S + Y+QF+A+R    +G   ++    NPF +M   
Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYNVG-NPFDFMD-N 276

Query: 327 IDLKKEKNFFETRVTEYQQGAE 348
           I ++ + NFFE RV+EYQ+   
Sbjct: 277 ISIEGKTNFFERRVSEYQRMGV 298


>gi|88608725|ref|YP_506404.1| ribonucleotide-diphosphate reductase subunit beta [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600894|gb|ABD46362.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia
           sennetsu str. Miyayama]
          Length = 322

 Score =  213 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 143/324 (44%), Gaps = 18/324 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y WA++ +      HW+P E+PM DD+  W  K   T  E+ ++ +   FF 
Sbjct: 7   RLSYKPFQYDWAYQAWEIQQKIHWLPEEIPMADDVQDWHHKICGT--EKNLLTQIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
            ++  V +  +         PE    L   A  E +H   + +++ ++G+ E E +  + 
Sbjct: 65  QADVEVHDCYMRHYAGVFKPPEVCMMLTAFANMETIHIAAYAHLLDTVGMPETE-YLAFT 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  K  +                  D   E  + L V+    EG+  +  FA +L+
Sbjct: 124 KYKQMKEKCEY------------LKAFKMDNPTEIAKTLAVYGAFTEGLQLFASFAILLN 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
             R NKM G+ +   Y +RDE+LH N    +     +EN ++   + + + R + +    
Sbjct: 172 FPRFNKMKGMGQIIAYSVRDETLHSNSITKLFRTFLLEN-NIDKFKLEAEIREICNAMVH 230

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            E A+       G   GL A   ++Y+++IAN R  Q+G   +++   NP  W+  V++ 
Sbjct: 231 HEDAFIDLAFEMGDVEGLKASEVKEYIRYIANLRLKQLGFSEIYEQKVNPLLWLEAVLNT 290

Query: 330 KKEKNFFETRVTEYQQ-GAELKWD 352
            +  NFFE + TEY +   +  WD
Sbjct: 291 VEHTNFFENKATEYSKAATKGTWD 314


>gi|83592781|ref|YP_426533.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum
           rubrum ATCC 11170]
 gi|83575695|gb|ABC22246.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC
           11170]
          Length = 358

 Score =  213 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 82/328 (25%), Positives = 146/328 (44%), Gaps = 28/328 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y WA+E +      HWM  EVP+ +DL  W S + ++D ER ++ +   FF  S+  V+
Sbjct: 30  RYPWAYEFWKKQQQVHWMGEEVPLGEDLKDWAS-DRVSDQERNLLTQIFRFFTQSDVEVS 88

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           +N +          E +  +      E +H   +  ++T+LG+   E F+ +R+  ++  
Sbjct: 89  DNYLKRYMPIFQPLEIQMMMAAFTNMETIHIDAYALLLTTLGMPRTE-FSAFRDYAAMRD 147

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA++              T       +  + L +F    EGM  +  FA +L+  R NKM
Sbjct: 148 KADYMH------------TFGVGTMADVSRTLAMFGAFTEGMALFASFAMLLNFPRHNKM 195

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+ +   + +RDESLH    I + ++   E     TK  +     +      LE  +  
Sbjct: 196 KGMGQIVTWSVRDESLHCQGIIRLFHEWNRET-GALTKPVRDDILDVATTMVGLEEKFVD 254

Query: 278 ETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-----------TENPFPWMSE 325
                G   G+ A   + Y++++A+ R  Q+ L  L+ +             +P PW+ E
Sbjct: 255 LAFELGAIEGMRAEDIKSYVRYVADWRLTQLKLPILYGHFRETEAGYEQLRPHPLPWLVE 314

Query: 326 VIDLKKEKNFFETRVTEYQQ-GAELKWD 352
           +++  +  NFFE R TEY +   +  WD
Sbjct: 315 ILNGVEHANFFEQRSTEYSKAATQGAWD 342


>gi|313887688|ref|ZP_07821370.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312846297|gb|EFR33676.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 346

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 157/348 (45%), Gaps = 15/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +  +    +R++N  + ++N    LKY W  + Y  A NN W+P E+ +  D+  +
Sbjct: 8   LFNEKGDIETSKRRVINGNTTNLNDFNNLKYSWTSDWYRQAMNNFWIPEEINLSQDVKDY 67

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L   E+    + L F    +SL    I   +  +++  E    L  Q ++E++HS
Sbjct: 68  RE---LDKAEKTAYDKILSFLIYLDSLQTAQIP-KLQSYVTANEINLCLSIQGYQESIHS 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++   E       RE      K +  L          +    ++ + +    
Sbjct: 124 QSYSYILDTICSPEE------REEILYQYKDDEVLLKRNKFIGDQYQDFYENENLDNFMK 177

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF+   +LGR  KM G   + +YI RDE+ HL     +I ++K E
Sbjct: 178 ALIANYILEGIYFYSGFSFFYNLGRMGKMPGTVSEIRYINRDENTHLWLFRSIILEMKKE 237

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P ++T E  +K + ML +    EIA+    +     GLN    E Y+ ++ N R   +G
Sbjct: 238 EPEIFTDENIEKYKEMLKKGVEEEIAWGKYVIGDEIKGLNEKMIEDYIMYLGNLRSRNLG 297

Query: 309 LEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
              LF           W+SE  D  + + +FFE R + Y + + ++ D
Sbjct: 298 FGNLFDENIDEPESMKWVSEYSDPNQIKTDFFEARPSAYSKSSVIEDD 345


>gi|313894221|ref|ZP_07827786.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313441045|gb|EFR59472.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 342

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 87/346 (25%), Positives = 164/346 (47%), Gaps = 15/346 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           I             M+   + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +
Sbjct: 6   IFNEHGDRGTQS--MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF 63

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                LTD ER    + + F    +S+ + N+   + R+++  E    L  Q F+E +H+
Sbjct: 64  ---PYLTDYERRAFDKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQTFQEEIHA 119

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ YI+ ++         + R+      + +  L       + ++   + D  +  L  
Sbjct: 120 QSYSYILDTVTNP------ITRDKIYDEWRTDKTLLARNRFIADAYQRFSDDPSEANLIH 173

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
             +   + EG++FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I +++ E
Sbjct: 174 TIIANYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRE 233

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
            P L+T E ++K   M+ + T  EIA+         +GLN    E+Y++++AN R   IG
Sbjct: 234 RPDLFTPELEEKITDMIRQGTENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIG 293

Query: 309 LEPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           L  L+    +NP  W+    +L   + +FFE +VT Y + A   +D
Sbjct: 294 LPHLYPEIKDNPMEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|330941351|gb|EGH44203.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 317

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 158/253 (62%), Positives = 203/253 (80%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 64  LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D ALWK+  GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADTALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+  KA W L+YT+++S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVE 243

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            D+E L++L  +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303

Query: 241 VINQIKIENPHLW 253
           VINQIKIENPHLW
Sbjct: 304 VINQIKIENPHLW 316


>gi|282849773|ref|ZP_06259157.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           parvula ATCC 17745]
 gi|282580710|gb|EFB86109.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           parvula ATCC 17745]
          Length = 342

 Score =  212 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+   + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER   
Sbjct: 18  MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + + F    +S+ + N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++    
Sbjct: 75  DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              ++++ +R   ++  +  +     Q  S         D  +  L    +   + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I +++ E P L+T E + K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
              M+ +    EIA+         +GLN    E+Y++++AN R   IGL  L+    ENP
Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKENP 305

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             W+    +L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|330998673|ref|ZP_08322403.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|329576534|gb|EGG58042.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 327

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 87/326 (26%), Positives = 151/326 (46%), Gaps = 20/326 (6%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
             N   P  Y WA++ ++++   HW+ TEVPM +D+  WK  N LTD ER  + +   FF
Sbjct: 8   SRNYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWK--NVLTDGERDFLTKVFRFF 65

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +  V++  V         PE R  L   A  EAVH   + ++I ++G+ E  ++N +
Sbjct: 66  TQGDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPET-VYNEF 124

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            +  ++  K ++            F    +D  +     +  F    EGM  ++ F  +L
Sbjct: 125 LQYEAMAEKHDF------------FHGLAEDQQENIAVKMAAFSAFTEGMQLFSSFVMLL 172

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
           +  R   M G+ +   + + DE+LH    I +  +  IENP LWT   +++   +  +  
Sbjct: 173 NFTRNGTMKGMGQIIAWSINDETLHTESMIRLFREYIIENPELWTDSLKKRIYDIAEKMI 232

Query: 270 LLEIAYAHETMPKGFV---GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
            LE A+         +    L+    + Y+++I +RR   +G++ +FK   NP PW+  +
Sbjct: 233 ELEDAFIDLAFGVNDMSKQNLSPADVKAYIRWICDRRLAAMGMKEIFKVNVNPLPWVDSM 292

Query: 327 IDLKKEKNFFETRVTEYQQGA-ELKW 351
           +      NFFE RV +Y +GA    W
Sbjct: 293 L-GVTHTNFFENRVVDYAKGALSGSW 317


>gi|163781846|ref|ZP_02176846.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883066|gb|EDP76570.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 350

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 171/349 (48%), Gaps = 19/349 (5%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67
           I   E   +  ++R++N    ++ +L  +KY WA++ Y +   +N W+P E+P+ +D   
Sbjct: 14  IFNPEGERDAANRRIINGNPTNIIELNNIKYPWAFDLYKTMGFSNFWIPEEIPLMEDKKQ 73

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           ++    L+D ER   +  L F  + +S   + ++    R +S PE    L  Q F+E++H
Sbjct: 74  YE--RVLSDYERRAYELVLSFLIALDSFQVD-MLKDFARMISAPEVEMALTAQEFQESIH 130

Query: 128 SHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           ++++Q+I+ S+       E++N +RE   +  +     +              +   +E 
Sbjct: 131 AYSYQFILESVVDPIKADEIYNYWREDEKLKERNEVVAEVYNEFI--------RKPSEEN 182

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                +   + E ++FY+GFA   +LGR  KM    +Q +YI RDE  H+    ++I  +
Sbjct: 183 FIKAVIGNYILESLYFYSGFAFFYTLGRQGKMTNTVQQIKYINRDELTHVTLFRNMILNL 242

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L++ E ++        A   EI +         +G+N    ++Y++++ N R  
Sbjct: 243 QKEQPELFSPEIKKWIAEYFRYAIDQEIKWGQYVTQDQILGINNQLIDRYIKYLGNLRIT 302

Query: 306 QIGLEPLFK-YTENPFPWMSEV--IDLKKEKNFFETRVTEYQQGAELKW 351
           QIGLEPL+   TENP  W+ +   I+   + +FF+ +   Y +  ELKW
Sbjct: 303 QIGLEPLYPEITENPMKWIDDFRKIN-NTKTDFFQRKPQTYAKANELKW 350


>gi|288817346|ref|YP_003431693.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|288786745|dbj|BAI68492.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|308750953|gb|ADO44436.1| ribonucleotide reductase [Hydrogenobacter thermophilus TK-6]
          Length = 342

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 169/348 (48%), Gaps = 17/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67
           I   +       ++++     ++ +L  +KY WA++ Y +    N W+P E+PM +D   
Sbjct: 6   IFNPQGDRETSKRKVIFGNPTNIMELNNVKYQWAFDLYKTMGFTNFWVPEEIPMHEDKKQ 65

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           ++    L+  E+   +  L F  + +S   N ++    R+++ PE    L  Q F+EA+H
Sbjct: 66  YEK--DLSPYEKRAYEMVLSFLIALDSYQVN-MLKEFARYITAPELVMALTSQEFQEALH 122

Query: 128 SHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           S+++Q+I+ S+   +   E++N +R+   +  +     Q              +   +E 
Sbjct: 123 SYSYQFILESVVEPQVADEIYNYWRQDTVLMERNQVIAQLYNEFI--------RHPTEEN 174

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                    V E ++FY+GFA   +LGR  KM    +Q +YI RDE  H+    ++I  I
Sbjct: 175 FIKATFGNYVLESLYFYSGFAFFYTLGRQGKMRNTVQQIKYINRDELTHVTLFRNIIQTI 234

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K ENP L+T E ++        AT  EI +         +G+N    ++Y++++AN R  
Sbjct: 235 KQENPELFTPELEKWVYEFFKYATDAEIKWGQYVTQNQILGINNTLIDRYIKYLANLRLT 294

Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKW 351
           Q+G +PL+   TENP  W+ +   +   + +FF+ +   Y + +ELKW
Sbjct: 295 QLGYKPLYPEITENPMKWIDQFRTINDTKTDFFQAKPQTYAKRSELKW 342


>gi|62421216|gb|AAX82336.1| ribonucleotide reductase small chain [Orange-spotted grouper
           iridovirus]
          Length = 312

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 147/322 (45%), Gaps = 28/322 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D   L P      W  Y  A  + W   EV +  D+  W   + LT+ ER  +   L FF
Sbjct: 2   DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58

Query: 90  ASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146
           A ++ +V +N+V    + L   PE R +   Q   E +H+  +  +I +L   E +  LF
Sbjct: 59  AMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALF 118

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           +   ++P + AKA WA Q+      P             +    + +   EG+ F   FA
Sbjct: 119 SAAEDMPCVKAKAQWAAQWLNATHKP-------------IATRLLAFAAVEGVMFSGSFA 165

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I  L + + M G+A   + I RDE LH +F   +  Q+  +         Q  +  ++ 
Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMANK-------PCQDDAHEIIS 218

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           +A  +E A+  E +    +G+N+ S + Y+QF+A+R    +G   ++    NPF +M   
Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYNVG-NPFDFMD-N 276

Query: 327 IDLKKEKNFFETRVTEYQQGAE 348
           I ++ + NFFE RV+EYQ+   
Sbjct: 277 ISIEGKTNFFERRVSEYQRMGV 298


>gi|299472857|emb|CBN80426.1| EsV-1-128 [Ectocarpus siliculosus]
          Length = 419

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 141/337 (41%), Gaps = 34/337 (10%)

Query: 22  KRMLNARSD--VNQLLP----LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + M     D     L       +Y   ++ Y       W+  E+ M  D   W      +
Sbjct: 94  EPMCVEEEDFDRFILFNGKTEHEYADVFQLYKKQTALFWVVEEIDMSGDSKDWDDA---S 150

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            DE+  +K  L FFAS + +V  NI L     +  P+ RQ+   Q   EAVH  ++  +I
Sbjct: 151 SDEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQIRQHFAIQEATEAVHGESYSLLI 210

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   +    + +P I  KA WA ++                +   L +  V 
Sbjct: 211 QTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMN-------------PETASLAERLVG 257

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG+ F   F  I  L +  K  G++     I RDE LH    + +   ++ + P  
Sbjct: 258 FTCLEGVQFSGSFCAIYWLKKRQKFKGLSFANSLIARDEGLHATASVLIYKHLRNKLP-- 315

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
                Q++   +   A  +E  +    +P   +G++  S  +Y++F+A+   +Q+G + +
Sbjct: 316 -----QERVHEIFEHAVSVECEFISSALPVALIGISEKSMTEYIKFVADYWLNQLGYDKV 370

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +    NPF WM  +I L+ + NFFE RV EY +   L
Sbjct: 371 YNCA-NPFEWMD-MISLQGKTNFFENRVAEYSKPGVL 405


>gi|303228685|ref|ZP_07315510.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           atypica ACS-134-V-Col7a]
 gi|303230495|ref|ZP_07317254.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514861|gb|EFL56844.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302516665|gb|EFL58582.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 342

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+   + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER   
Sbjct: 18  MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + + F    +S+ + N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++    
Sbjct: 75  DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              ++++ +R   ++  +  +     Q  S         D  +  L    +   + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I +++ E P L+T E + K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
              M+ +    EIA+         +GLN    E+Y++++AN R   IGL  L+    +NP
Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             W+    +L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|50288235|ref|XP_446546.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525854|emb|CAG59473.1| unnamed protein product [Candida glabrata]
          Length = 335

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 140/334 (41%), Gaps = 28/334 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L        + P+KY   W  Y       W   ++ +  D+  W++   L+  ++
Sbjct: 6   KDEVLLMENKRRFVMFPIKYHEIWAAYKKVEAAFWTAEDMELAKDVKDWET---LSAGQK 62

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
                 L   + ++++V  NIV      L NPE + +   Q   E ++   +  ++ +L 
Sbjct: 63  EFFGNYLAICSRTDNIVNKNIVEKFSAELQNPEGKSFYGFQIMMENIYDEIYSMLVDALF 122

Query: 140 L--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
              D   LF    +   + AK+ WA ++                D+    +  V     E
Sbjct: 123 TSVDNIPLFKAVCQQEEVKAKSEWAHRW-------------VFDDESLYAERLVASAARE 169

Query: 198 GMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           G++    FA +  L +    M G+A    +I RD   + +F   +   +K       TK 
Sbjct: 170 GIFMSGAFAALYWLTKEKGIMPGVAMATNHICRDRGFYADFACLLFAHLK-------TKP 222

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             +    ++ EA  +E A+   +MP   +G++    +QY++ +A++     G E  +  T
Sbjct: 223 NPKIIEQIITEAVEIEKAHYRNSMPIEKLGMDLKEIDQYIESVADKLLVSFGNEKFYNAT 282

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            NPFP+M E   +  + NFFE +V++YQ+ +   
Sbjct: 283 -NPFPFMEEATSI-GKTNFFEKKVSDYQKASATS 314


>gi|238018468|ref|ZP_04598894.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748]
 gi|237864939|gb|EEP66229.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748]
          Length = 342

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+   + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER   
Sbjct: 18  MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + + F    +S+ + N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++    
Sbjct: 75  DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              ++++ +R   ++  +  +     Q  S         D  +  L    +   + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I +++ E P L+T E + K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
              M+ +    EIA+         +GLN    E+Y++++AN R   IGL  L+    +NP
Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             W+    +L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|269798663|ref|YP_003312563.1| ribonucleotide reductase [Veillonella parvula DSM 2008]
 gi|294792661|ref|ZP_06757808.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           6_1_27]
 gi|269095292|gb|ACZ25283.1| ribonucleotide reductase [Veillonella parvula DSM 2008]
 gi|294456560|gb|EFG24923.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           6_1_27]
          Length = 342

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+   + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER   
Sbjct: 18  MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + + F    +S+ + N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++    
Sbjct: 75  DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              ++++ +R   ++  +  +     Q  S         D  +  L    +   + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I +++ E P L+T E + K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
              M+ +    EIA+         +GLN    E+Y++++AN R   IGL  L+    +NP
Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             W+    +L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|294794440|ref|ZP_06759576.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           3_1_44]
 gi|294454770|gb|EFG23143.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
           3_1_44]
          Length = 342

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 165/334 (49%), Gaps = 17/334 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+   + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER   
Sbjct: 18  MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + + F    +S+ + N+   + R+++  E    L  QAF+E +H+ ++ YI+ ++    
Sbjct: 75  DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              ++++ +R   ++  +  +     Q  S         D  +  L    +   + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I +++ E P L+T E + K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
              M+ + T  EIA+         +GLN    E+Y++++AN R   IGL  L+    +NP
Sbjct: 246 ITDMIRQGTENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             W+    +L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|13242599|ref|NP_077613.1| EsV-1-128 [Ectocarpus siliculosus virus 1]
 gi|13177402|gb|AAK14546.1|AF204951_128 EsV-1-128 [Ectocarpus siliculosus virus 1]
          Length = 419

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 141/337 (41%), Gaps = 34/337 (10%)

Query: 22  KRMLNARSD--VNQLLP----LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + M     D     L       +Y   ++ Y       W+  E+ +  D   W+     +
Sbjct: 94  EPMCVEEEDFDRFILFNGKTEHEYADVFQLYKKQTALFWVVEEIDLSGDSKDWEDA---S 150

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            DE+  +K  L FFAS + +V  NI L     +  P+ RQ+   Q   EAVH  ++  +I
Sbjct: 151 SDEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQIRQHFAIQEATEAVHGESYSLLI 210

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   +    + +P I  KA WA ++                +   L +  V 
Sbjct: 211 QTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMN-------------PETASLAERLVG 257

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG+ F   F  I  L +  K  G++     I RDE LH    + +   +K   P  
Sbjct: 258 FTCLEGVQFSGSFCAIYWLKKRQKFKGLSFANSLIARDEGLHATASVLIYKHLKNRLP-- 315

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
                +++   +   A  +E  +    +P   +G++  S  +Y++F+A+   +Q+G + +
Sbjct: 316 -----RERVHEIFKHAVSVECEFISSALPVALIGISEKSMTEYIKFVADYWLNQLGYDKV 370

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +    NPF WM  +I L+ + NFFE RV EY +   L
Sbjct: 371 YNCA-NPFEWMD-MISLQGKTNFFENRVAEYSKPGVL 405


>gi|303258316|ref|ZP_07344319.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales
           bacterium 1_1_47]
 gi|302858762|gb|EFL81850.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales
           bacterium 1_1_47]
          Length = 328

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 87/326 (26%), Positives = 151/326 (46%), Gaps = 20/326 (6%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
             N   P  Y WA++ ++++   HW+ TEVPM +D+  WK  N LTD ER  + +   FF
Sbjct: 9   SRNYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWK--NVLTDGERDFLTKVFRFF 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +  V++  V         PE R  L   A  EAVH   + ++I ++G+ E  ++N +
Sbjct: 67  TQGDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPET-VYNEF 125

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            +  ++  K ++            F    +D  +     +  F    EGM  ++ F  +L
Sbjct: 126 LQYEAMAEKHDF------------FHGLAEDQQENIAVKMAAFSAFTEGMQLFSSFVMLL 173

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
           +  R   M G+ +   + + DE+LH    I +  +  IENP LWT   +++   +  +  
Sbjct: 174 NFTRNGTMKGMGQIIAWSINDETLHTESMIRLFREYIIENPELWTDSLKKRIYDIAEKMI 233

Query: 270 LLEIAYAHETMPKGFV---GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
            LE A+         +    L+    + Y+++I +RR   +G++ +FK   NP PW+  +
Sbjct: 234 ELEDAFIDLAFGVNDMSKQNLSPADVKAYIRWICDRRLAAMGMKEIFKVNVNPLPWVDSM 293

Query: 327 IDLKKEKNFFETRVTEYQQGA-ELKW 351
           +      NFFE RV +Y +GA    W
Sbjct: 294 L-GVTHTNFFENRVVDYAKGALSGSW 318


>gi|253582918|ref|ZP_04860136.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           varium ATCC 27725]
 gi|251835124|gb|EES63667.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           varium ATCC 27725]
          Length = 348

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 89/361 (24%), Positives = 167/361 (46%), Gaps = 24/361 (6%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +       ++  +R++    +++  L  +KY WA + Y +   N W+P ++
Sbjct: 1   MKAAVDRKKLFNPLGDDSLSKRRIIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +K    LTD E+      L F    +S+  NNI   +  +++ PE    L  
Sbjct: 61  DLTQDKNDYK---NLTDQEKEAYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           Q F+EA+HS ++QYII S+   E    +++ +RE   +  +  +  +  Q          
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKEIRNSIYDKWREDKILFERNKYIAEMYQRFL------- 169

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
            ++ + E    + V   + E ++FY GF     L   N+M+G ++  + I RDE  H+  
Sbjct: 170 -ENPNDENFSKVIVADYLLEAIYFYNGFNFFYLLASRNRMMGTSDIIRLINRDELSHVVI 228

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              ++ +I+ ENP  +  E   +   M  +A   EI + +  +    +G+   + EQY +
Sbjct: 229 FQHLLKEIRNENPDFFNDE---EIYDMFRKAVEQEINWTNHIIGNQILGITEETTEQYTK 285

Query: 298 FIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-W 351
           ++AN R   IGL+P++    +NP+  +++  D +     + NFFE  VT Y   + +  W
Sbjct: 286 WLANERLRSIGLKPIYDGFNKNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGW 345

Query: 352 D 352
           D
Sbjct: 346 D 346


>gi|226950223|ref|YP_002805314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843961|gb|ACO86627.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 342

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 86/334 (25%), Positives = 167/334 (50%), Gaps = 13/334 (3%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
                  + R+      + +  L       +  +    K+ +      + +   + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRVIMANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K ENPH++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENPHIFTEELEEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
            R M+      EI +         +GLN    E+Y+++++N R   IGL+PL+ +  ++P
Sbjct: 246 FRQMMRIGVEHEIQWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYLEINKHP 305

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             W+     L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|257468678|ref|ZP_05632772.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           ulcerans ATCC 49185]
          Length = 348

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 87/361 (24%), Positives = 169/361 (46%), Gaps = 24/361 (6%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +       ++  +R++    +++  L  +KY WA + Y +   N W+P ++
Sbjct: 1   MKAVVDRKKLFNPLGDDSLSKRRVIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +K    LTD E+      L F    +S+  NNI   +  +++ PE    L  
Sbjct: 61  DLTQDKNDYK---NLTDQEKEAYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           Q F+EA+HS ++QYII S+   E    +++ +RE   +  +  +  +  Q          
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKEIRNSIYDKWREDKILFERNKYIAEMYQKFL------- 169

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
            ++ + +    + +   + E ++FY GF     L   N+M+G ++  + I RDE  H+  
Sbjct: 170 -EEPNDKNFSKVIIADYLLEAIYFYNGFNFFYLLASRNRMMGTSDVIRLINRDELSHVVI 228

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              ++ +I+ ENP  +  E   +  +M  +A   EI + +  +    +G+   + EQY +
Sbjct: 229 FQHLLKEIRNENPDFFNDE---EIYSMFRKAVEQEINWTNHIIGNQILGITEETTEQYTK 285

Query: 298 FIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-W 351
           ++AN R   IGL+P+++   +NP+  +++  D +     + NFFE  VT Y   + +  W
Sbjct: 286 WLANERLRSIGLKPIYEGFNKNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGW 345

Query: 352 D 352
           D
Sbjct: 346 D 346


>gi|289548460|ref|YP_003473448.1| ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484]
 gi|289182077|gb|ADC89321.1| Ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484]
          Length = 342

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 170/348 (48%), Gaps = 17/348 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67
           I   E       +R++     ++ +L  +KY WA++ Y +    N W+P E+ M +D   
Sbjct: 6   IFNPEGDREASKRRIIKGNPTNIMELNNVKYQWAFDLYKTMGFTNFWIPEEISMMEDRKQ 65

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           ++    L+  E+   +  L F  + +S   N ++    R L+ PE    +  Q F+EA+H
Sbjct: 66  YE--RVLSAHEKRAYEMVLSFLIALDSYQVN-MLKEFARFLTAPELTMAITAQEFQEALH 122

Query: 128 SHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           S+++Q+I+ S+       E++N +RE   +  +          + +  +    +  D+E 
Sbjct: 123 SYSYQFILESVVDPVKADEIYNYWREDKVLMER--------NRVIADLYNDFVRKQDEET 174

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                    V E ++FY+GFA   +LGR  KM+   +Q +YI RDE  H++   ++I  +
Sbjct: 175 FLKAVFGNYVLESLYFYSGFAFFYTLGRQGKMLSTVQQIKYINRDELTHVSLFRNIILTL 234

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           K ENP L+T E ++  +     A   EI +         +G+N    ++Y++++AN R  
Sbjct: 235 KKENPELFTPEMEKWVKEFFRYAASEEIKWGQYVTRNQILGINDQLIDRYIKYLANLRLT 294

Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKW 351
           QIG EP+F   TENP  W+     +   + +FF+ +   Y + +ELKW
Sbjct: 295 QIGYEPVFPDVTENPMKWIDTFRTINDTKTDFFQAKPQTYAKRSELKW 342


>gi|160947324|ref|ZP_02094491.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270]
 gi|158446458|gb|EDP23453.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270]
          Length = 349

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 158/350 (45%), Gaps = 15/350 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             +      + +  ++M+N  + ++N    +KY W  E Y +A NN W+P E+ +  DL 
Sbjct: 6   KALFNENGDIELSKRKMINGNTTNLNDFNNVKYTWTTEWYRNAMNNFWIPEEINLFQDLK 65

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +K    L + E+    + L F    +S+   N+   I  +++  E    L  QA++EA+
Sbjct: 66  DYK---ILDEYEKTAFDKVLSFLIFLDSIQTANLP-YIGEYITANEINLCLTIQAYQEAI 121

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ Y++ S+   E       R       + +  L          +     + D   L
Sbjct: 122 HSQSYGYMLDSICSPEE------RTNILYQWRDDEHLLARNKFIGDLYNEFQVNKDPYSL 175

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V   + EG++FY+GF    +LGR  KM G  ++ +YI RDE+ HL     ++ +++
Sbjct: 176 VKTMVANYILEGVYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFKKMLLELQ 235

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E P L+T+E     + M+      EIA+    + +   GL     E Y++++ N R   
Sbjct: 236 NEEPELFTEEKVAVYKDMIKTGVEQEIAWGKYVLGENIPGLTIQMVEDYIKYLGNLRSTA 295

Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           +    L+  Y E P    W+SE  D    + +FFE + + Y + + +  D
Sbjct: 296 LNFGKLYDGYDEEPESMKWVSEYSDPNAIKTDFFEAKPSAYSKSSVIDDD 345


>gi|168179222|ref|ZP_02613886.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum NCTC 2916]
 gi|182669722|gb|EDT81698.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum NCTC 2916]
          Length = 342

 Score =  210 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 165/334 (49%), Gaps = 13/334 (3%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
                  + R+      + +  L       +  +    K+ +      + +   + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRVIMANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  K+   +  ++YI RDE  HL    ++I ++K EN H++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKLTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R M+      EI +         +GLN    E+Y+++++N R   IGL+PL+    ++P
Sbjct: 246 FRQMMRIGVEHEIQWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYPEINKHP 305

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             W+     L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|255323570|ref|ZP_05364700.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           showae RM3277]
 gi|255299284|gb|EET78571.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           showae RM3277]
          Length = 340

 Score =  210 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 155/349 (44%), Gaps = 13/349 (3%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       N+ D+R+ N     +      KY WA + +     N W P EV   DD
Sbjct: 2   NRKRIYNPSSNENLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  +     LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EE
Sbjct: 62  VRDYA--YNLTQAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEE 119

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A HS ++  ++ ++  +   ++ M +    +  K ++     + L+              
Sbjct: 120 ANHSKSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEELAGEVTDEKL------ 173

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 174 --LLAMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINS 231

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E P L+T E + K   M   A  LEI +         +G      EQY++++ ++R 
Sbjct: 232 VRTERPDLFTPETEAKIYDMFERAGELEIKWGKYITQNQIMGFTDDIIEQYIRYLIDQRL 291

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             IGL+  +    +P  W+ +      ++ NFFE +VT Y +G+    D
Sbjct: 292 VAIGLKRRYNV-PHPIKWVDDFAKFNDQKSNFFEAKVTNYSKGSISFDD 339


>gi|19881429|ref|NP_612246.1| putative ribonucleotide reductase small subunit [Infectious spleen
           and kidney necrosis virus]
 gi|19773634|gb|AAL98748.1|AF371960_24 putative ribonucleotide reductase small subunit [infectious spleen
           and kidney necrosis virus]
          Length = 312

 Score =  210 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 28/322 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D   L P      W  Y  A  + W   EV +  D+  W     LT+ ER  +   L FF
Sbjct: 2   DKYVLRP-SDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TEKLTEAERRFMSHILAFF 58

Query: 90  ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146
           A ++ +V +N+V    + L   PE R +   Q   E +H+  +  +I +L   E +  LF
Sbjct: 59  AMADGIVGDNLVCNFAKELDYIPEARAFYGFQVAMENIHAEMYTQLIITLVAKENQAALF 118

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           +   ++P + AKA WA Q+                  + +    + +   EG+ F   FA
Sbjct: 119 SAAEDMPCVKAKAQWAAQWLNA-------------THKSIATRLLAFAAVEGVMFSGSFA 165

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I  L + + M G+A   + I RDE LH +F   +  Q+         K  Q  +  ++ 
Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMAN-------KPCQDDAHQIIS 218

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           +A  +E A+  E +    +G+N+ S   Y+QF+A+R    +G   ++    NPF +M   
Sbjct: 219 DAVDIETAFFQEALKTPLLGMNSDSMRLYIQFVADRLLDALGYAKMYNVA-NPFDFMD-N 276

Query: 327 IDLKKEKNFFETRVTEYQQGAE 348
           I ++ + NFFE RV+EYQ+   
Sbjct: 277 ISIEGKTNFFERRVSEYQRMGV 298


>gi|256027986|ref|ZP_05441820.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp.
           D11]
          Length = 348

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 88/358 (24%), Positives = 163/358 (45%), Gaps = 23/358 (6%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V
Sbjct: 1   MKVVVDRKKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   ++    LT  ER      L F    +S+  NNI   I  H++ PE    L  
Sbjct: 61  DLTQDKNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           Q F+EA+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q          
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID------ 170

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
             +   E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+  
Sbjct: 171 --EQSDENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVL 228

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              ++ +IK + P+ ++ E      +M   A   EIA+    +    +G+ + + E Y +
Sbjct: 229 FRSIVKEIKNDFPNFFSAET---VYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTK 285

Query: 298 FIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           ++AN R   +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 286 WLANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343


>gi|323143005|ref|ZP_08077711.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas
           hippei YIT 12066]
 gi|322417199|gb|EFY07827.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas
           hippei YIT 12066]
          Length = 331

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 81/324 (25%), Positives = 147/324 (45%), Gaps = 18/324 (5%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
             +   P  Y WA+E ++ +   HW+ TEVPM +D+  WK    L D+ER  + +   FF
Sbjct: 16  SRDYYKPFVYPWAYEAFMQSEQMHWLWTEVPMVEDVKDWK--MRLNDNERDFLTKVFRFF 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +  V++  V         PE R  L   A  EAVH   + ++I ++G+ +  ++N +
Sbjct: 74  TQGDIDVSSAYVHTYLPAFPQPEIRMMLSSFAAREAVHIAAYSHLIETIGMPDA-IYNEF 132

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
            +  ++ AK  +            F     + ++     +  F    EGM  ++ F  +L
Sbjct: 133 LQYEAMAAKHEF------------FHGLRLNQNENIAAKMAAFSAFTEGMQLFSSFVMLL 180

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
           +  R   M G+ +   + + DE+LH    I +  +   +NP LW  + +    ++  +  
Sbjct: 181 NFTRNGTMRGMGQIIAWSINDETLHTESMIKLFREYIEQNPQLWNDDLKSTIYSIAEKMV 240

Query: 270 LLEIAYAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
            LE ++            L     ++Y++FIA+RR   +G++ +F   +NP PW+  ++ 
Sbjct: 241 ELEDSFIDLAFGVNQMQKLAKEDVKKYIRFIADRRLSAMGMKAIFNEKKNPLPWVDAML- 299

Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
                NFFE RV +Y +GA    W
Sbjct: 300 GVTHTNFFENRVVDYAKGALSGDW 323


>gi|209170936|ref|YP_002268082.1| agip52 [Agrotis ipsilon multiple nucleopolyhedrovirus]
 gi|208436527|gb|ACI28754.1| ribonucleotide reductase-2B [Agrotis ipsilon multiple
           nucleopolyhedrovirus]
          Length = 313

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 94/324 (29%), Positives = 148/324 (45%), Gaps = 26/324 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+ +   W  Y  A +  W   EV M  D   ++S   L DDER  IK  L FFA
Sbjct: 5   RKVLKPILHDDLWAAYKQAFDCMWKVEEVDMSRDYDDFES--KLNDDERYFIKHVLAFFA 62

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
           +++S+V  N++  + R++   E + +   Q   E VH+  +  +I  L  DE E   L N
Sbjct: 63  AADSIVNINLIEYMQRNVPELEAQYFYNLQVLIECVHTEMYNLLIEQLIKDEHERDTLLN 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            +  VP +  KA WA+++ ++             D   L +  V + + EG++F   FA 
Sbjct: 123 AFEHVPCVRKKAQWAMKWIES-------------DTATLAERMVAFAIVEGVFFSGSFAA 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  +     M G+    + I RDE LH +F          E      K       +M  E
Sbjct: 170 IFYIKTKGIMPGLTFSNELISRDEGLHTDFACLYYKTRVTE------KLDSDTILSMFKE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E  +    +P   +G+NA S  +Y++F+A+R   Q+G    F    NPF +M+  I
Sbjct: 224 AVAIEKEFFTAALPVELLGMNAQSMCEYIEFVADRLLVQLGQPKYFN-ARNPFEFMN-NI 281

Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
            L+ + NFFE RV EY++    + 
Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGED 305


>gi|168184457|ref|ZP_02619121.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum Bf]
 gi|237796249|ref|YP_002863801.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
           botulinum Ba4 str. 657]
 gi|182672468|gb|EDT84429.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum Bf]
 gi|229263158|gb|ACQ54191.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum Ba4 str. 657]
          Length = 342

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 166/334 (49%), Gaps = 13/334 (3%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
                  + R+      + +  L       +  +    K+ +      + +   + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRVIMANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K EN H++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
            R M+      EI +         +GLN    E+Y+++++N R   IGL+PL+ +  ++P
Sbjct: 246 FRQMMRIGVEHEIQWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYLEINKHP 305

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             W+     L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|153940168|ref|YP_001392091.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum F str. Langeland]
 gi|170756361|ref|YP_001782419.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum B1 str. Okra]
 gi|152936064|gb|ABS41562.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum F str. Langeland]
 gi|169121573|gb|ACA45409.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum B1 str. Okra]
 gi|322807123|emb|CBZ04697.1| ribonucleotide reductase of class Ia (aerobic),beta subunit
           [Clostridium botulinum H04402 065]
          Length = 342

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 164/334 (49%), Gaps = 13/334 (3%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
                  + R+      + +  L       +  +    K+ +        +   + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRAIMANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K EN H++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R M+      EI +         +GLN    E+Y+++++N R   IGL+PL+    ++P
Sbjct: 246 FRQMMRMGVEHEIQWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYPEINKHP 305

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             W+     L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|317062933|ref|ZP_07927418.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688609|gb|EFS25444.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           ulcerans ATCC 49185]
          Length = 353

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 86/360 (23%), Positives = 168/360 (46%), Gaps = 24/360 (6%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
                   +       ++  +R++    +++  L  +KY WA + Y +   N W+P ++ 
Sbjct: 7   KAVVDRKKLFNPLGDDSLSKRRVIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKID 66

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +  D   +K    LTD E+      L F    +S+  NNI   +  +++ PE    L  Q
Sbjct: 67  LTQDKNDYK---NLTDQEKEAYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSIQ 122

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
            F+EA+HS ++QYII S+   E    +++ +RE   +  +  +  +  Q           
Sbjct: 123 TFQEAIHSQSYQYIIESILPKEIRNSIYDKWREDKILFERNKYIAEMYQKFL-------- 174

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
           ++ + +    + +   + E ++FY GF     L   N+M+G ++  + I RDE  H+   
Sbjct: 175 EEPNDKNFSKVIIADYLLEAIYFYNGFNFFYLLASRNRMMGTSDVIRLINRDELSHVVIF 234

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
             ++ +I+ ENP  +  E   +  +M  +A   EI + +  +    +G+   + EQY ++
Sbjct: 235 QHLLKEIRNENPDFFNDE---EIYSMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKW 291

Query: 299 IANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           +AN R   IGL+P+++   +NP+  +++  D +     + NFFE  VT Y   + +  WD
Sbjct: 292 LANERLRSIGLKPIYEGFNKNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 351


>gi|88682973|gb|AAI05512.1| RRM2 protein [Bos taurus]
          Length = 338

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 141/308 (45%), Gaps = 29/308 (9%)

Query: 47  LSACNNHWMPTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
            +A      P+E V +  D+  W+    L  +ER  I   L FFA+S+ +V  N+V    
Sbjct: 43  KTARRIFQEPSEPVDLSKDIQHWE---ALKSEERYFISHVLAFFAASDGIVNENLVERFS 99

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
           + +   E R +   Q   E +HS  +  +I +   D  E   LFN    +P +  KA+WA
Sbjct: 100 QEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWA 159

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L++                      +  V +   EG++F   FA I  L +   M G+  
Sbjct: 160 LRWIG-------------DKAATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTF 206

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   +   +         K  +Q+ + ++  A  +E  +  E +P 
Sbjct: 207 SNELISRDEGLHCDFACLMFKHLL-------HKPSEQRVKEIIVNAVRIEQEFLTEALPV 259

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV E
Sbjct: 260 KLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV-ENPFDFM-ENISLEGKTNFFEKRVGE 317

Query: 343 YQQGAELK 350
           YQ+   + 
Sbjct: 318 YQRMGVMS 325


>gi|76630263|ref|XP_880783.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 3 [Bos
           taurus]
 gi|297480612|ref|XP_002691528.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 2 [Bos
           taurus]
 gi|296482362|gb|DAA24477.1| ribonucleotide reductase M2 polypeptide isoform 2 [Bos taurus]
          Length = 341

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 141/308 (45%), Gaps = 29/308 (9%)

Query: 47  LSACNNHWMPTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
            +A      P+E V +  D+  W+    L  +ER  I   L FFA+S+ +V  N+V    
Sbjct: 46  KTARRIFQEPSEPVDLSKDIQHWE---ALKSEERYFISHVLAFFAASDGIVNENLVERFS 102

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
           + +   E R +   Q   E +HS  +  +I +   D  E   LFN    +P +  KA+WA
Sbjct: 103 QEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWA 162

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L++                      +  V +   EG++F   FA I  L +   M G+  
Sbjct: 163 LRWIG-------------DKAATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTF 209

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I RDE LH +F   +   +         K  +Q+ + ++  A  +E  +  E +P 
Sbjct: 210 SNELISRDEGLHCDFACLMFKHLL-------HKPSEQRVKEIIVNAVRIEQEFLTEALPV 262

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             +G+N    +QY++F+A+R   ++G   +F+  ENPF +M E I L+ + NFFE RV E
Sbjct: 263 KLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV-ENPFDFM-ENISLEGKTNFFEKRVGE 320

Query: 343 YQQGAELK 350
           YQ+   + 
Sbjct: 321 YQRMGVMS 328


>gi|170761039|ref|YP_001788131.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408028|gb|ACA56439.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 342

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 164/334 (49%), Gaps = 13/334 (3%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
                  + R+      + +  L       +  +    K+ +        +   + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRAIMANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K EN H++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R M+      EI +         +GLN    E+Y+++++N R   IGL+PL+    ++P
Sbjct: 246 FRQMMRMGVEHEIQWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYPEINKHP 305

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             W+     L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIDGFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|19703451|ref|NP_603013.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19713529|gb|AAL94312.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 348

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 87/358 (24%), Positives = 162/358 (45%), Gaps = 23/358 (6%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V
Sbjct: 1   MKAAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   ++    LT  ER      L F    +S+  NNI   I  H++ PE    L  
Sbjct: 61  DLTQDKNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           Q F+EA+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q          
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID------ 170

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
             +   E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+  
Sbjct: 171 --EQSDENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVL 228

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              ++ +IK + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +
Sbjct: 229 FRSMVKEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTK 285

Query: 298 FIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           ++AN R   +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 286 WLANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343


>gi|296329016|ref|ZP_06871523.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296153909|gb|EFG94720.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 348

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 87/358 (24%), Positives = 162/358 (45%), Gaps = 23/358 (6%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V
Sbjct: 1   MKAAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   ++    LT  ER      L F    +S+  NNI   I  H++ PE    L  
Sbjct: 61  DLTQDKNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           Q F+EA+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q          
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID------ 170

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
             +   E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+  
Sbjct: 171 --EQSDENFAKIIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVL 228

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              ++ +IK + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +
Sbjct: 229 FRSMVKEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTK 285

Query: 298 FIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           ++AN R   +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 286 WLANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343


>gi|90592764|ref|YP_529717.1| RR2B [Agrotis segetum nucleopolyhedrovirus]
 gi|71559214|gb|AAZ38213.1| RR2B [Agrotis segetum nucleopolyhedrovirus]
          Length = 313

 Score =  208 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 145/324 (44%), Gaps = 26/324 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+++   W  Y  A +  W   EV +  D   +   + L DDER  IK  L FFA
Sbjct: 5   RKVLFPIQHNDLWRAYKQALDCMWKVEEVDLSKDCDDF--TSKLNDDERYFIKHVLAFFA 62

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
           +++S+V  N++  + +++   E + +  +Q   E VH+  +  +I  L  DE E   L N
Sbjct: 63  AADSIVNINLIEYMQQNVPELEAQYFYNQQVLIECVHTEMYNLLIHQLISDEHERDTLLN 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            +  +P +  K +WA+++  +                   +  V + + EG++F   FA 
Sbjct: 123 AFERMPCVRKKTDWAMKWINS-------------STATFAERMVAFAIVEGVFFSGSFAA 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  +     M G+    + I RDE LH +F     N    +      K       +M  E
Sbjct: 170 IFYIKTKGIMPGLTFSNELISRDEGLHTDFACLYYNTRVHD------KLAPDTVLSMFKE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E  +    +P   +G+NA S   Y++F+A+R   Q+     F +  NPF +M+  I
Sbjct: 224 AVAIEKEFFTAALPAALLGMNAQSMCDYIEFVADRLLVQLHQPKHF-HARNPFEFMN-NI 281

Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
            L+ + NFFE RV EY++      
Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGDD 305


>gi|215401283|ref|YP_002332587.1| ribonucleotide reductase small subunit [Helicoverpa armigera
           multiple nucleopolyhedrovirus]
 gi|198448783|gb|ACH88573.1| ribonucleotide reductase small subunit [Helicoverpa armigera
           multiple nucleopolyhedrovirus]
          Length = 313

 Score =  208 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 146/324 (45%), Gaps = 26/324 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+ +   +E Y  A    W   EV +  D   ++    L +D+R  I   LGFF+
Sbjct: 5   RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQ--LKLNNDQRHFIMHVLGFFS 62

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
           +++S+V  N++  + + +   E   +   QA  E VH+  +  +I +L  D+ +   + N
Sbjct: 63  AADSIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILN 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            +  +P +  K +WAL++            TK+      + L   + + EG++F   FA 
Sbjct: 123 AFDNIPCVRKKDDWALKW------------TKNKKLTLAERLVA-FAIVEGVFFSGSFAA 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  +     M G+    + I RDE +H +F     N    E      K   +    M  E
Sbjct: 170 IFYIKTLGIMPGLTFSNELISRDEGMHTDFACLYYNTRVNE------KLSYETILDMFKE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E  +  + +P   +G+NA    +Y++F+A+R   Q+G    +    NPFP+M+  I
Sbjct: 224 AVDIEKEFFTDALPVALLGMNADMMCEYIEFVADRLLLQLGQPKYYN-ARNPFPFMN-NI 281

Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
            L+ + NFFE RV EY+       
Sbjct: 282 SLEGKTNFFERRVGEYKMFGTGSD 305


>gi|229827460|ref|ZP_04453529.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC
           49176]
 gi|229788398|gb|EEP24512.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC
           49176]
          Length = 354

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 91/357 (25%), Positives = 169/357 (47%), Gaps = 19/357 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M  +     I     +     + +LN  + ++ +   +KY WA   Y +  NN W+P E+
Sbjct: 9   METDMEKKKIFNELGKRGT--EGILNGNTTNLREWNRIKYDWANVMYRTMLNNFWIPEEI 66

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            + +D+  +   + LT  ER    + + F    +S+   N+   + R+++  E    L  
Sbjct: 67  SLGEDIKQF---SYLTAGERKAFDKIISFLNFLDSIQCENLP-NLARYITAAEVASLLNV 122

Query: 120 QAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           QAF+E +H+ ++ YI+ ++       ++++ +RE P +  +  +     Q  +       
Sbjct: 123 QAFQEEIHAQSYSYILDTVTNPVTRDKIYDEWREDPILLRRNKFIADMYQRFAD------ 176

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
             D   E      +   + EG++FY+GF+   +L R  KM   +  ++YI RDE  HL  
Sbjct: 177 --DPSTENFVRSVMANYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLVL 234

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
             ++I ++  ENP ++T E + + R M+   TL EI +         +G+N    E+Y++
Sbjct: 235 FQNIIRELMKENPEIFTDELKGELREMVKVGTLNEIEWGQYVTNNEILGINNELIERYIK 294

Query: 298 FIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
           +++N R   IGL   F   TENP  W+    +L   + +FFE +VT Y + A   +D
Sbjct: 295 YLSNLRLRAIGLPVWFPEITENPMAWIESFSNLNATKTDFFEAKVTNYTKAAAFDFD 351


>gi|157164305|ref|YP_001467763.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           concisus 13826]
 gi|112800348|gb|EAT97692.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           concisus 13826]
          Length = 340

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 156/349 (44%), Gaps = 13/349 (3%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       N+ D+R+ N     +      KY WA + +     N W P EV   DD
Sbjct: 2   NRKRIYNPSSNENLTDRRVFNGNPHGILNFTKAKYEWALKLWDLMEANTWFPKEVDTTDD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  +     LT+ E+ M         S +S   NN+   I  +++ PE    L RQA+EE
Sbjct: 62  VRDYA--YNLTEAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEE 119

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A HS ++  ++ ++  +   ++ M +    +  K ++     + L+              
Sbjct: 120 ANHSKSYAVMVEAICDNTDLIYEMEKHDDVLREKNDYISSVYEELAGEVTDEKL------ 173

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 174 --LLAMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINS 231

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E P L+T E + K   M  +A  LEI +         +G      EQY+ ++ ++R 
Sbjct: 232 VRKERPDLFTPETEAKIYDMFEKAGNLEIKWGKYITQNQIMGFTDDIIEQYIHYLIDQRL 291

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             IGL+  +    +P  W+ +      ++ NFFE +VT Y +G+    D
Sbjct: 292 VAIGLKRKYNVA-HPIKWVDDFAKFNDQKSNFFEAKVTNYSKGSISFDD 339


>gi|291461082|ref|ZP_06026838.2| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379059|gb|EFE86577.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           periodonticum ATCC 33693]
          Length = 348

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 86/358 (24%), Positives = 161/358 (44%), Gaps = 23/358 (6%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V
Sbjct: 1   MKAVVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   ++    LT  ER      L F    +S+  NNI   I  H++ PE    L  
Sbjct: 61  DLTQDKNDYE---NLTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           Q F+EA+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q          
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID------ 170

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
             +   E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+  
Sbjct: 171 --EQSDENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVL 228

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              ++ +IK + P  ++ E      +M   A   EI +    +    +G+ + + E Y +
Sbjct: 229 FRSIVKEIKNDYPEFFSAET---IYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEAYTK 285

Query: 298 FIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           ++AN R   +GLEPL+  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 286 WLANERLKSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343


>gi|22549454|ref|NP_689227.1| putative ribonucleotide reductase small subunit-like protein
           [Mamestra configurata NPV-B]
 gi|22476633|gb|AAM95039.1| putative ribonucleotide reductase small subunit-like protein
           [Mamestra configurata NPV-B]
          Length = 313

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 145/324 (44%), Gaps = 26/324 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+ +   +E Y  A    W   EV +  D   ++    L +D+R  I   LGFF+
Sbjct: 5   RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQ--LKLNNDQRHFIMHVLGFFS 62

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
           +++S+V  N++  + + +   E   +   QA  E VH+  +  +I +L  D+ +   + N
Sbjct: 63  AADSIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILN 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            +  +  +  K +WAL++            TK+      + L   + + EG++F   FA 
Sbjct: 123 AFDNISCVRKKDDWALKW------------TKNKKLTLAERLVA-FAIVEGVFFSGSFAA 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  +     M G+    + I RDE +H +F     N    E      K   +    M  E
Sbjct: 170 IFYIKTLGIMPGLTFSNELISRDEGMHTDFACLYYNTRVNE------KLSYETILDMFKE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E  +  + +P   +G+NA    +Y++F+A+R   Q+G    +    NPFP+M+  I
Sbjct: 224 AVDIEKEFFTDALPVALLGMNADMMCEYIEFVADRLLLQLGQPKYYN-ARNPFPFMN-NI 281

Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
            L+ + NFFE RV EY+       
Sbjct: 282 SLEGKTNFFERRVGEYKMFGTGSD 305


>gi|417659|sp|P32209|RIR2_SWPVK RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|347472|gb|AAC37857.1| ribonucleotide reductase [Swinepox virus]
          Length = 274

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 125/293 (42%), Gaps = 27/293 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        + P+KY   W+ Y  +  + W   EV +  DL  W   + LT DE+  
Sbjct: 2   EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFASS+ +V  N+    Y  +   E R +   Q   E +HS  +  +I +   D
Sbjct: 59  IKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +  +  KA+WA ++               +  +   +  V +   EG
Sbjct: 119 NIEKMHLFNAIETMECVKKKADWARKWI--------------SSNKVYGERVVAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  + +   M G+    + I RDE LH +F   +   +            +
Sbjct: 165 IFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSK 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
           +   +++ +A  +E  +    +P   +G+N     QY++F+A+R   ++G E 
Sbjct: 218 EVITSIIIDAVNIEKEFLTVAIPVDLIGMNCCLMSQYIEFVADRLLTELGCEK 270


>gi|148380773|ref|YP_001255314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932443|ref|YP_001385057.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|153934989|ref|YP_001388527.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A str. Hall]
 gi|148290257|emb|CAL84376.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           botulinum A str. ATCC 3502]
 gi|152928487|gb|ABS33987.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930903|gb|ABS36402.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum A str. Hall]
          Length = 342

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 164/334 (49%), Gaps = 13/334 (3%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
                  + R+      + +  L       +  +    K+ +        +   + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRAIMANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K EN H++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENLHIFTEELEEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R M+      EI +         +GLN    E+Y+++++N R   IGL+PL+    ++P
Sbjct: 246 FRQMMRMGVEHEIQWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYPEINKHP 305

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             W+     L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339


>gi|118474076|ref|YP_891239.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413302|gb|ABK81722.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 340

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 156/349 (44%), Gaps = 13/349 (3%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I        ++D+++       +      KY WA + +     N W P EV   DD
Sbjct: 2   NRKKIYNPSSNETLNDRKVFGGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTDD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  +     LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EE
Sbjct: 62  VRDYAC--NLTTAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAILARQAYEE 119

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A HS ++  ++ ++  +   ++ M +    +  K ++     + L+              
Sbjct: 120 ANHSKSYAVMVEAICDNTDLIYEMEKYDDVLRKKNDYISSVYEELAGEVTDEKL------ 173

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 174 --LLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINS 231

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E P L+T E + K   M  +A  LEI +         +G      E+Y+ ++ + R 
Sbjct: 232 VRKERPDLFTSEVEAKIYEMFKKAGDLEIEWGKYITGNQIMGFTDDIIEEYIHYLVDDRL 291

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             IGL+ L+   ++P  W+ +      ++ NFFE++VT Y +G+    D
Sbjct: 292 TSIGLKKLYN-AKHPIKWVDDFAKFNDQKSNFFESKVTNYSKGSLTFDD 339


>gi|223039245|ref|ZP_03609535.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           rectus RM3267]
 gi|222879606|gb|EEF14697.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           rectus RM3267]
          Length = 340

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 154/349 (44%), Gaps = 13/349 (3%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       N+ D+R+ N     +      KY WA + +     N W P EV    D
Sbjct: 2   NRKRIYNPGSNENLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTSGD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  +     LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EE
Sbjct: 62  VRDYA--YSLTQAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEE 119

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A HS ++  ++ ++  +   ++ M +    +  K ++     + L+              
Sbjct: 120 ANHSKSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEELAGEVTDEKL------ 173

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 174 --LLAMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINS 231

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E P L+T E + K   M   A  LEI +         +G      EQY++++ ++R 
Sbjct: 232 VRTERPDLFTSEMEAKIYDMFKRAGELEIKWGKYITQNQIMGFTDDIIEQYIRYLIDQRL 291

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             IGL+  +    +P  W+ +      ++ NFFE +VT Y +G+    D
Sbjct: 292 VAIGLKRRYD-ARHPIKWVDDFAKFNDQKSNFFEAKVTNYSKGSISFDD 339


>gi|294463759|gb|ADE77404.1| unknown [Picea sitchensis]
          Length = 289

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 83/297 (27%), Positives = 139/297 (46%), Gaps = 29/297 (9%)

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
            EV +  DL  W     LT +E+  I   L FFA+S+ +V  N+     + +  PE R +
Sbjct: 2   EEVDLSQDLYQW---VNLTKNEKHFISHVLAFFAASDGIVLENLAGRFLKDVQIPEARAF 58

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173
              Q   E +HS  +  ++ +   D  E   LFN    +P +  KA WA+++ Q+  S  
Sbjct: 59  YGFQIAIENIHSEMYSLLLETYIRDSKEKARLFNAINTIPCVARKAEWAMRWIQSSGS-- 116

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                         +  V +   EG++F   F  I  L +   M G+    + I RDE L
Sbjct: 117 ------------FAERIVSFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGL 164

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H +F   + +        L +K  +++ + ++ +A  +E  +  E +    VG+NA    
Sbjct: 165 HCDFACLLYS-------LLKSKLSEERVKAIVRDAVDIEREFVCEALSCDLVGMNATLMS 217

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           QY++FIA+R    +G   ++   ENPF WM  +I L+ + NFFE RV +YQ+ + + 
Sbjct: 218 QYIKFIADRLLVALGHGKMYHV-ENPFDWMD-LISLQGKTNFFERRVGDYQKASIMS 272


>gi|215401441|ref|YP_002332744.1| RR2b [Spodoptera litura nucleopolyhedrovirus II]
 gi|209483982|gb|ACI47415.1| RR2b [Spodoptera litura nucleopolyhedrovirus II]
          Length = 313

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 154/324 (47%), Gaps = 26/324 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+++   W  Y  A +  W   EV +  D   +     LTD+ER  I++ L FFA
Sbjct: 5   RKVLFPIQHIDLWTAYKQALDCMWKVEEVDLSKDYDDF--TQKLTDNERNFIEKILAFFA 62

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
           +++S+V  NI+  + R +   E + +  +Q   E +H+  +  +I +L  DE +   L N
Sbjct: 63  AADSIVNINIIEHMQRTVPELEAQYFYNQQVLIECIHTEMYNLLIHALIKDEEKQATLLN 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            +  +P +  KA WA++Y +              +   L +  + + + EG++F   FA 
Sbjct: 123 GFESMPCVRRKAEWAMKYIE-------------NENVTLAERLIAFAIVEGVFFSGSFAA 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  +     M G+    + I RDE LH NF     N    +      K        M  E
Sbjct: 170 IFYMKTKGVMPGLTFSNELISRDEGLHTNFACLYYNTRVDQ------KLDVPTVSDMFAE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E+ +  E +P+  VG+NA    +Y++F+A+R   Q+    ++ +TENPF +M+  I
Sbjct: 224 AVAIEMEFFAEALPESLVGMNAEMMRKYIEFVADRLLVQLKYPKIY-HTENPFEFMN-NI 281

Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
            L+ + NFFE RV EY++    + 
Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGED 305


>gi|20069937|ref|NP_613141.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A]
 gi|20043331|gb|AAM09166.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A]
 gi|33331769|gb|AAQ11077.1| putative ribonucleotide reductase small subunit-like protein
           [Mamestra configurata NPV-A]
          Length = 313

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 144/324 (44%), Gaps = 26/324 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+ +   +E Y  A    W   EV +  D   ++    L +D+R  I   LGFF+
Sbjct: 5   RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQ--LKLNNDQRHFIMHVLGFFS 62

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
           +++S+V  N++  + + +   E   +   QA  E VH+  +  +I  L  D+     + N
Sbjct: 63  AADSIVNINVLNYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIIELIPDKKHQDLILN 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            +  VP +  K +WAL++ +            +    F + L   + + EG++F   FA 
Sbjct: 123 AFDNVPCVRKKDDWALKWIE------------NDKATFAERLVA-FAIVEGVFFSGSFAA 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  +     M G+    + I RDE +H +F     N    E      K   +K   M  E
Sbjct: 170 IFYIKTLGIMPGLTFSNELISRDEGMHTDFACLYYNTRVKE------KLSYEKILDMFKE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E  +  + +P   +G+NA    +Y++F+A+R   Q+G    +    NPF +M+  I
Sbjct: 224 AVDIEKEFFTDALPVSLLGMNATMMCEYIEFVADRLLMQLGQPKYYN-ARNPFSFMN-NI 281

Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
            L+ + NFFE RV EY+       
Sbjct: 282 SLEGKTNFFERRVGEYKMFGTGSD 305


>gi|197322443|ref|YP_002154716.1| putative ribonucleotide reductase small subunit [Feldmannia species
           virus]
 gi|197130510|gb|ACH46846.1| putative ribonucleotide reductase small subunit [Feldmannia species
           virus]
          Length = 342

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 141/338 (41%), Gaps = 34/338 (10%)

Query: 22  KRMLNARS--DVNQLLP----LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           + M +  S  D   L       +Y   +  Y       W   E+ + +D+  W   +  +
Sbjct: 17  EPMCHEDSEFDRFILFNQKSEFEYADVYALYKKEIACFWTVEEMDLSEDVECW---DKSS 73

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            DE+  I   L FFAS + +V  N+ +     +  P+ R +   Q   E++H   +  +I
Sbjct: 74  SDEQHFIIHILAFFASLDQIVMENVSVNFGDEIVIPQVRSHFAIQNAIESIHGEAYSILI 133

Query: 136 TSLG---LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +       + ++    +E+P I  KA W   +              D +   L +  V 
Sbjct: 134 QTYVKNSQQQSKILRSVQEMPIIRKKAQWVTSWM-------------DPETCSLAERLVA 180

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +   EG+ F   F  I  L +  +  G+      I RDE LH    + + N +K   P  
Sbjct: 181 FTCVEGVQFSGAFCAIYWLKKQGRFRGLCFANSLIARDEGLHAEGSVMIYNHLKHRLPV- 239

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
                      +  +AT +E  +  E +P   +G+NA +   Y+++I++    ++G   L
Sbjct: 240 ------AVVHDIFGQATTIEKEFIREALPVSLIGINAGTMSTYIEYISDFWLEKLGYPKL 293

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           F  ++NPF WM+ +I ++ + NFFE RV EY +   + 
Sbjct: 294 FN-SKNPFEWMT-MIGMEGKSNFFEGRVAEYSKAGSMT 329


>gi|154174558|ref|YP_001409201.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           curvus 525.92]
 gi|112803525|gb|EAU00869.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           curvus 525.92]
          Length = 340

 Score =  206 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 160/349 (45%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       N+ D+R+ N     +      KY WA + +     N W P EV   DD
Sbjct: 2   NRKRIYNPSSNENLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  +     LTD E+ M         S +S   NN+   I  +++ PE    L RQA+EE
Sbjct: 62  VRDYA--YNLTDAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEE 119

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A HS ++  ++ ++  +   ++ M +    +  K ++     + L+              
Sbjct: 120 ANHSKSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEELAGEVTDEKL------ 173

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 174 --LLAMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINS 231

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+T E ++K   M  +A  LEI +         +G      E+Y+ ++ ++R 
Sbjct: 232 VRAERSDLFTPEMEEKIYDMFEKAGNLEIKWGRYITQNQIMGFTDDIIEEYIHYLVDQRL 291

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             IGL+  +   ++P  W+ +      ++ NFFE++VT Y +G+ L +D
Sbjct: 292 VAIGLKRKYN-AKHPIKWVDDFAKFNDQKSNFFESKVTNYSKGS-LSFD 338


>gi|193206379|ref|NP_500944.2| hypothetical protein F58F9.1 [Caenorhabditis elegans]
          Length = 581

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 136/318 (42%), Gaps = 46/318 (14%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   ++   + P+ +   WE Y  A    W   EV +  D++ W+    LT DER  
Sbjct: 307 EPLLAPNNNRFVVHPIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWE---ILTSDERQF 363

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   D
Sbjct: 364 ISSILAFFAASDGIVTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRD 423

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LFN       I AKA+W L++              D +  F + L     V EG
Sbjct: 424 DAERNILFNAITTFKFIKAKADWCLRWI------------SDHNAPFSERLAAVAAV-EG 470

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F + FA I  L +   + G+    + I R                         K  +
Sbjct: 471 IFFSSSFAAIFWLKKRGLLPGLTHSNELISR-------------------------KPAE 505

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
            +   +++E+ L+E  +  E++P   +G+N     +Y++F+A+    ++G    +  T+N
Sbjct: 506 SRITEIINESVLVEQDFVRESLPTNLIGMNQHMMCKYVEFVADLLLEELGYSKRYN-TKN 564

Query: 319 PFPWMSEVIDLKKEKNFF 336
            F +M E I ++ + NFF
Sbjct: 565 LFDFM-ENISIEGKTNFF 581


>gi|297736972|emb|CBI26173.3| unnamed protein product [Vitis vinifera]
          Length = 312

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 129/289 (44%), Gaps = 29/289 (10%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  D+  W+S   L++ E+  I   L FFA+S+ +V  N+    
Sbjct: 1   MYKKAEASFWTAEEVDLSHDVQQWES---LSNSEKHFISHVLAFFAASDGIVLENLAARF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
              +  PE R +   Q   E +HS  +  ++ +   D  E   LFN    +  +  KA W
Sbjct: 58  LHDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIESISCVAGKAKW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL + Q+                   +  + +   EG++F   F  I  L +   M G+ 
Sbjct: 118 ALDWIQS--------------STLFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLT 163

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   + + ++ + P        QK   ++HEA  +E  +  E +P
Sbjct: 164 FSNELISRDEGLHCDFACLLYSLLQKQLPW-------QKVHHIVHEAVEIETQFVCEALP 216

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
              +G+NA    QY++F+A+R    +G E  +   ENPF WM E I L+
Sbjct: 217 CALIGMNATLMSQYIKFVADRLLVALGYERKYNV-ENPFDWM-EFISLQ 263


>gi|260497963|ref|ZP_05816079.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_33]
 gi|260196471|gb|EEW94002.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_33]
          Length = 344

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 162/353 (45%), Gaps = 23/353 (6%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V +  D
Sbjct: 2   DRKKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              ++    LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+E
Sbjct: 62  KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISEHVTAPEVNLLLAIQTFQE 117

Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           A+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q            +  
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIV 229

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +IK + P+ ++ E      +M   A   EIA+    +    +G+ + + E Y +++AN 
Sbjct: 230 KEIKNDFPNFFSAET---VYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANE 286

Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           R   +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 287 RLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|294784669|ref|ZP_06749957.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_27]
 gi|294486383|gb|EFG33745.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_27]
          Length = 344

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 161/353 (45%), Gaps = 23/353 (6%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               +   E    ++ +R++    +++  L  ++Y WA + Y +   N W+P +V +  D
Sbjct: 2   DRKKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              ++    LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+E
Sbjct: 62  KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQE 117

Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           A+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q            +  
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMV 229

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +IK + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++AN 
Sbjct: 230 KEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANE 286

Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           R   +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 287 RLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|289765931|ref|ZP_06525309.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. D11]
 gi|289717486|gb|EFD81498.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. D11]
          Length = 344

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 162/353 (45%), Gaps = 23/353 (6%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V +  D
Sbjct: 2   DRKKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              ++    LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+E
Sbjct: 62  KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQE 117

Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           A+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q            +  
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIV 229

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +IK + P+ ++ E      +M   A   EIA+    +    +G+ + + E Y +++AN 
Sbjct: 230 KEIKNDFPNFFSAET---VYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANE 286

Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           R   +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 287 RLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|254303614|ref|ZP_04970972.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148323806|gb|EDK89056.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 344

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 162/353 (45%), Gaps = 23/353 (6%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               +   E    ++ +R++    +++  L  ++Y WA + Y +   N W+P +V +  D
Sbjct: 2   DRKKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              ++    LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+E
Sbjct: 62  KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQE 117

Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           A+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q            +  
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMV 229

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +IK + P+ ++ E      +M   A   EIA+    +    +G+ + + E Y +++AN 
Sbjct: 230 KEIKNDFPNFFSAET---IYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANE 286

Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           R   +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 287 RLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|237738278|ref|ZP_04568759.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420158|gb|EEO35205.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           mortiferum ATCC 9817]
          Length = 348

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/361 (24%), Positives = 169/361 (46%), Gaps = 24/361 (6%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +       ++++++++    +++  L  +KYGWA   Y +   N W+P ++
Sbjct: 1   MKVVVDRKKLFNPSGIDSLNERKIIKGNSTNIFNLNNVKYGWANHLYRTMMGNFWIPEKI 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   +   N LT+ E+      L F    +S+  NNI   I  +++ PE    L  
Sbjct: 61  DLTQDRVDY---NNLTNYEKEAYDGILSFLIFLDSIQTNNIP-NISDYITAPEINLILSI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           Q F+EA+HS ++QYII S+   E    +++ +RE   +  +  +  +  Q          
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKETRNYIYDKWREDKILFERNRYIAEIYQNFLD------ 170

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
             + D +    + V   + E ++FY GF     L   N+M+G ++  + I RDE  H+  
Sbjct: 171 --NPDDKNFARVIVADYLLESIYFYNGFNFFYLLASRNRMMGTSDIIRLINRDELSHVVI 228

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +I +++ ENP+ +    +     M  +A   EI++ +  +    +G+   + E Y +
Sbjct: 229 FQQMIKEVQNENPNFFD---ENIIYEMFEKAVEQEISWTNHIIGGNILGITEKTTESYTK 285

Query: 298 FIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-W 351
           ++AN R   IGL+PL++ Y +NP+  +    D +     + NFFE  VT Y   + ++ W
Sbjct: 286 WLANERLKSIGLQPLYEGYEKNPYKHLERFADTEGEGNVKANFFEGTVTSYNMSSSVEGW 345

Query: 352 D 352
           D
Sbjct: 346 D 346


>gi|237742881|ref|ZP_04573362.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 4_1_13]
 gi|229430529|gb|EEO40741.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 4_1_13]
          Length = 344

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 85/353 (24%), Positives = 161/353 (45%), Gaps = 23/353 (6%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V +  D
Sbjct: 2   DRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              ++    LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+E
Sbjct: 62  KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQE 117

Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           A+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q            +  
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMV 229

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +IK + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++AN 
Sbjct: 230 KEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANE 286

Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           R   +GLEPL+  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 287 RLKSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|237678830|emb|CAQ57557.1| NrdB protein [Bradyrhizobium elkanii]
          Length = 360

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 82/328 (25%), Positives = 142/328 (43%), Gaps = 28/328 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y WA+E +      HWM  EVP+  DL  W S + +TD ER ++ +   FF  S+  V 
Sbjct: 36  RYAWAYEFWKRQQQTHWMGEEVPLGADLKDWAS-DRVTDSERALLTQIFRFFTQSDIEVG 94

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           +N +            +  +      E VH   +  ++ +LG+ + E F  +R    + A
Sbjct: 95  DNYLKRYIPIFQPLTVQMMMAAFTNMETVHIDAYALLLKTLGMPKTE-FEAFRGYSEMRA 153

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA++  ++              D   +  + L +F    EGM  +  FA +L+  R NKM
Sbjct: 154 KADYMHEF------------GVDTVADVARTLAMFGAFTEGMALFASFAMLLNFPRHNKM 201

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+ +   + +RDESLH    I + ++   E     T+  +     +      LE  +  
Sbjct: 202 NGMGQIVSWSVRDESLHCEGIIKLFHEWNRET-GAVTRSVRDDIVDVAKTMVKLEENFVD 260

Query: 278 ETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-----------TENPFPWMSE 325
                G   G+       Y++++A+ R  Q+ + P+F +             +P PW+ E
Sbjct: 261 LAFGLGKIEGMRPEQIHTYVRYVADWRLTQLRIAPVFGFFEAKEGGFTQLKAHPLPWLVE 320

Query: 326 VIDLKKEKNFFETRVTEYQQGAE-LKWD 352
           +++  +  NFFE R TEY + A    WD
Sbjct: 321 ILNGVEHANFFEQRATEYSKAASRGSWD 348


>gi|328722535|ref|XP_001944897.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
           [Acyrthosiphon pisum]
          Length = 345

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/328 (22%), Positives = 136/328 (41%), Gaps = 28/328 (8%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
             +   + +L        + P+ Y   W  Y     + W    V ++ DL  W     +T
Sbjct: 32  NFDATIEPLLKDNPRRFVIFPIIYDNIWAMYKKHEASLWNIEAVNLKSDLEDW---MRMT 88

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           D+ER  I   L F A+S  +V+ N+V    + +   E R +   Q   E +HS  +  +I
Sbjct: 89  DEERHFISYILAFLAASNGIVSENLVKRFSQEVQVTEARCFYGFQIMIENIHSEMYSLLI 148

Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
            +   D  E   L N    +P +   A+W L++              D+   F + L  F
Sbjct: 149 DTYIKDPKEKETLINATETMPCVKKMADWVLKWI------------TDSKATFGERLVTF 196

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
             V  G++       I  L +   M+G+    + I RDE LH +F   +   +  + P  
Sbjct: 197 AAVK-GIFLSGNVPSITWLTKRGLMLGLTFSNELIFRDEGLHTDFACLLFKHLDQKPPLT 255

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
                      ++ +A  +E  +    +    VG++     +Y++F+A+R  +++G   +
Sbjct: 256 V-------ITHIICKAVTIEQYFLTNALLVKMVGMSCEKMAEYIEFVADRLLNELGCPAV 308

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  + NPFP+M  ++  + + N FE RV
Sbjct: 309 Y-RSSNPFPFMD-LLSQQGKTNGFEKRV 334


>gi|187778605|ref|ZP_02995078.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC
           15579]
 gi|187772230|gb|EDU36032.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC
           15579]
          Length = 342

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 166/334 (49%), Gaps = 13/334 (3%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA + Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDVKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++  E    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
                  + R+      + +  L       +  +    K+ +      + +   + EG++
Sbjct: 132 P------ITRDKIYDQWREDEQLLERNKFIAGIYEKFNKEPEIYNFLRVIMANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K ENP+++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKSENPNIFTEELEEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R M+      EI +         +GLN    ++Y+++++N R   IGL+PL+    ++P
Sbjct: 246 FREMMRMGVEHEIKWGQYVTNNEILGLNDELIDKYIKYLSNLRLTAIGLKPLYPEINKHP 305

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             W+     L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAVFDFD 339


>gi|237743586|ref|ZP_04574067.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 7_1]
 gi|229432617|gb|EEO42829.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 7_1]
          Length = 344

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 161/353 (45%), Gaps = 23/353 (6%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V +  D
Sbjct: 2   DRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              ++    LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+E
Sbjct: 62  KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQE 117

Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           A+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q            +  
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMV 229

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +IK + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++AN 
Sbjct: 230 KEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANE 286

Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           R   +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 287 RLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|237738722|ref|ZP_04569203.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 2_1_31]
 gi|229423825|gb|EEO38872.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 2_1_31]
          Length = 344

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 85/353 (24%), Positives = 160/353 (45%), Gaps = 23/353 (6%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V +  D
Sbjct: 2   DRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              ++    LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+E
Sbjct: 62  KNDYE---NLTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQE 117

Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           A+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q            +  
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIV 229

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +IK + P  ++ E      +M   A   EI +    +    +G+ + + E Y +++AN 
Sbjct: 230 KEIKNDYPEFFSAET---IYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEAYTKWLANE 286

Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           R   +GLEPL+  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 287 RLKSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|68171256|ref|ZP_00544659.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|67999338|gb|EAM85984.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str.
           Sapulpa]
          Length = 294

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 143/300 (47%), Gaps = 14/300 (4%)

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           +P EVP+ DD+  WK+   L++ E+ ++ +   FF  ++  V N  +          E  
Sbjct: 1   LPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQADIEVNNCYMKHYSNIFKPTEVC 58

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
             L   +  E +H   + Y++ ++G+ E E +  + +   +  K ++  ++ +       
Sbjct: 59  MMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEVMKKKYDYMQRFEE------- 110

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
               K+  +   + L VF    EG+  +  FA +L+  R  KM G+ +   + +RDE+LH
Sbjct: 111 --CRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRFGKMKGMGQIIAWSVRDETLH 168

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
               I + N    EN  +W    +Q+          LE  + +     G   GL++   +
Sbjct: 169 TESIIRLFNTFIQENYEIWDDSLKQELYEACRIIVSLEDEFINLAFACGDVEGLSSKEVK 228

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ-GAELKWD 352
           +Y+++IANRR  Q+ LEP++   +NP  W+ E+++  +  NFFE RVTEY +   E  W+
Sbjct: 229 EYIRYIANRRLLQLNLEPIYDTNKNPLLWLDEILNGVEHTNFFENRVTEYARAATEGTWE 288


>gi|319790519|ref|YP_004152152.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1]
 gi|317115021|gb|ADU97511.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1]
          Length = 352

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 93/352 (26%), Positives = 154/352 (43%), Gaps = 22/352 (6%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           PI   E   +   + +L   + ++  L  +KY WA + Y     N W+P  V +  D+  
Sbjct: 13  PIFNPEGNDDPAKRGILKGNTTNIFNLNVIKYPWATKLYRVMMANFWIPETVDLTQDVQD 72

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +K    LTDDER      L F    +S+   NI   I  ++  PE    L   A++EA+H
Sbjct: 73  YKE---LTDDERQAYDEILSFLVFLDSIQTTNIP-NIAAYVKAPEITIDLSIHAYQEAIH 128

Query: 128 SHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           S ++ Y I S+   E   E++  +++ P +  +  +     Q           ++   E 
Sbjct: 129 SQSYGYTIESVVPAEKREEVYYWWKKDPILFERNKYIADIYQKFL--------EEPTLEN 180

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
             ++ +   + EG++FY GF    +L   N M G A+  +YI RDE  H+      +  +
Sbjct: 181 YGEVLIGNYLLEGLYFYNGFMFFYNLASRNLMQGTADIIRYINRDELTHVILFEHFMKDL 240

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
             E         + K   M   A   E  ++ + +    +G+N  S E Y  +IAN+R  
Sbjct: 241 TDE--GFKKYLTKDKIYDMFRIAVDQEQRFSKKVIGNKILGMNEQSIEDYTFYIANKRLK 298

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
            +GLEP+F    NP+  +  + D       + NFFE  VT Y Q   ++ WD
Sbjct: 299 ALGLEPIFPDRGNPYEHLERIADTGGEANVKANFFEATVTSYNQANAVEGWD 350


>gi|268678691|ref|YP_003303122.1| ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616722|gb|ACZ11087.1| Ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 340

 Score =  203 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 84/349 (24%), Positives = 151/349 (43%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I       +++D+++       +      KY WA + +     N W P EV    D
Sbjct: 2   DRKKIYNPNSDESLNDRKVFGGNPHGILNFTKAKYTWALKLWDMMEGNTWFPKEVDTTKD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  +     LTD E+ M         S +S   NN+   I  +++ PE    L RQA+EE
Sbjct: 62  VIDYNK--NLTDAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLSRQAYEE 119

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A HS ++  ++ ++  +   ++ M +    +  K ++     + L+              
Sbjct: 120 ANHSKSYAVMVEAMCDNTDLIYEMEKHDEVLRRKNDYISSVYEELAGDVTEEKLV----- 174

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                     + EG++FY+GF  I +L R  +M+G A+  ++I RDE  HL    ++IN 
Sbjct: 175 ---LAMFANQILEGIYFYSGFTAIYALARTGRMLGSAQMIRFIQRDEITHLLLFQNMINT 231

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
            K E P L+T   + K   M  +A  LEI +         +G      E Y+ ++ + R 
Sbjct: 232 TKKERPDLFTDALKAKVYEMFQKAGDLEIEWGKYITQNQIMGFTDDIIETYIHYLVDDRL 291

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             +G + L+  + +P  W+ +      ++ NFFE  V+ Y +G+ L +D
Sbjct: 292 TAVGFDKLYNAS-HPIKWVDDFSKFNDQKTNFFEGNVSNYSKGS-LSFD 338


>gi|325294459|ref|YP_004280973.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325064907|gb|ADY72914.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 352

 Score =  203 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 89/352 (25%), Positives = 156/352 (44%), Gaps = 22/352 (6%)

Query: 9   PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           PI       +   + +L   + ++  L  +KY WA + Y     N W+P  V +  D+  
Sbjct: 13  PIFNPNGNDDPTKRGILYGNTTNIFNLNDVKYEWATKLYRVMMANFWIPETVDLTQDVLD 72

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +K    LT+DER      L F    +S+   NI   I  ++  PE    L   A++EA+H
Sbjct: 73  YKE---LTEDERQAYDEILSFLVFLDSIQTTNIP-NIAAYVKAPEITIDLSIHAYQEAIH 128

Query: 128 SHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           S ++ Y I S+   +    ++  +++ P +  +  +     Q           ++   E 
Sbjct: 129 SQSYGYTIESVIPPQHRETVYYWWKKDPILFERNKYIADIYQKFL--------EEPTMEN 180

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
             ++ V   + EG++FY GF    +L   N M G A+  +YI RDE  H+      +  +
Sbjct: 181 YGEVLVGNYLLEGLYFYNGFMFFYNLASRNLMQGTADIIRYINRDELTHVILFEHFMKDL 240

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
             E    +    + K   M   A   E  ++ + +    +G+N  S E+Y  ++AN+R  
Sbjct: 241 TDEEFKKYLP--KDKIYEMFKVAVNQEQRFSKKVIGNKILGMNEKSIEEYTYYVANKRLK 298

Query: 306 QIGLEPLFKYTENPFPWMSEVID----LKKEKNFFETRVTEYQQGAELK-WD 352
            +GL+P+F  T NP+  +  + D       + NFFE  VT Y Q + ++ WD
Sbjct: 299 ALGLDPIFPDTPNPYEHLERIADTGGEGNVKANFFEATVTSYNQASAVEGWD 350


>gi|294782021|ref|ZP_06747353.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 1_1_41FAA]
 gi|294481832|gb|EFG29601.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 1_1_41FAA]
          Length = 344

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 85/353 (24%), Positives = 160/353 (45%), Gaps = 23/353 (6%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V +  D
Sbjct: 2   DRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              ++    LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+E
Sbjct: 62  KNDYE---NLTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQE 117

Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           A+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q            +  
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIV 229

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +IK + P  ++ E      +M   A   EI +    +    +G+ + + E Y +++AN 
Sbjct: 230 KEIKNDYPEFFSAET---IYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEVYTKWLANE 286

Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           R   +GLEPL+  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 287 RLKSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|257453171|ref|ZP_05618470.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp.
           3_1_5R]
 gi|317059706|ref|ZP_07924191.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 3_1_5R]
 gi|313685382|gb|EFS22217.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. 3_1_5R]
          Length = 344

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 92/356 (25%), Positives = 163/356 (45%), Gaps = 24/356 (6%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               +   E   ++ ++R++    +++  L  +K+ WA + Y +   N W+P +V +  D
Sbjct: 2   DRKRLFNPEGNDSLLERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              ++    LT  ER      L F    +S+  NN V  I  +++ PE    L  Q F+E
Sbjct: 62  KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNN-VPNISDYVTAPEVNLLLSIQTFQE 117

Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           A+HS ++QYII S+   E    +++ +R+   +  +  +  Q  Q           ++  
Sbjct: 118 AIHSQSYQYIIESILPKESRDLIYDKWRDDKILFERNRFIAQIYQDFI--------EETS 169

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
                 + V   + E ++FY GF     L   NKMVG ++  + I RDE  H+     +I
Sbjct: 170 DRNFAKVLVANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKII 229

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +IK ENP+ +    +++ R M   A   EI +    +    +G+   + E Y +++AN 
Sbjct: 230 REIKAENPNFFQ---EEEIRMMFQTAVEQEILWTEHIIGNRVLGITTETTEAYTKWLANE 286

Query: 303 RCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           R   IGL P++   T+NP+  +    D +     + NFFE  VT Y   + +  WD
Sbjct: 287 RLRTIGLAPMYDGFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342


>gi|326792202|ref|YP_004310023.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427]
 gi|326542966|gb|ADZ84825.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427]
          Length = 342

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 86/350 (24%), Positives = 168/350 (48%), Gaps = 19/350 (5%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
             I   +         M+N  + ++ +   +KY WA   Y +  NN W+P E+ + +D+ 
Sbjct: 4   KRIFNEKGDRGTQQ--MINGNTTNLREWNRIKYDWAQTLYRTMLNNFWIPEEIALNEDVK 61

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     LTD ER    + + F    +S+ + N+   + R+++ PE    L  QAF+E +
Sbjct: 62  GF---PFLTDGERHAFDKIIAFLNFLDSIQSENLP-HLSRYITAPEVASLLNIQAFQEEI 117

Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++ YI+ ++       ++++ +RE   +  +  +     +           ++ + +
Sbjct: 118 HAQSYSYILDTVTNPVTRDKIYDQWREDEELLKRNRFIADIYERF--------NEEPNDK 169

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 +   + EG++FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I +
Sbjct: 170 NFLRAIMANYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLVVFQNIIKE 229

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +K ENP L+T+   ++ R M+      EIA+         +G+N    + Y+++++N+R 
Sbjct: 230 LKKENPELFTESMIEEFREMMRVGVEHEIAWGQYVTANEIMGINDQLIDAYIKYLSNQRL 289

Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDL-KKEKNFFETRVTEYQQGAELKWD 352
             IGLE L+   T +P  W+     L   + +FFE +VT Y + A   +D
Sbjct: 290 KAIGLEELYPEITTHPMAWIDSFSKLNNTKTDFFEAKVTNYTKAAAFDFD 339


>gi|257467364|ref|ZP_05631675.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918494|ref|ZP_07914734.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692369|gb|EFS29204.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 344

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 93/356 (26%), Positives = 165/356 (46%), Gaps = 24/356 (6%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               +   E   ++ ++R++    +++  L  +K+ WA + Y +   N W+P +V +  D
Sbjct: 2   DRKRLFNPEGNDSLLERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              ++    LT  ER      L F    +S+  NN V  I  +++ PE    L  Q F+E
Sbjct: 62  KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNN-VPNISDYVTAPEVNLLLSIQTFQE 117

Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           A+HS ++QYII S+   E    +++ +R+   +  +  +  Q  Q           ++A 
Sbjct: 118 AIHSQSYQYIIESILPKESRDLIYDKWRDDKILFERNRFIAQIYQDFI--------EEAS 169

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            +    + V   + E ++FY GF     L   NKMVG ++  + I RDE  H+     +I
Sbjct: 170 DKNFAKVLVANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKII 229

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +IK ENP+ +    +++ R M   A   EI +    +    +G+   + E Y +++AN 
Sbjct: 230 REIKAENPNFFQ---EEEIRMMFQTAVEQEILWTEHIIGNRVLGITTETTEAYTKWLANE 286

Query: 303 RCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           R   IGL P++   T+NP+  +    D +     + NFFE  VT Y   + +  WD
Sbjct: 287 RLRTIGLAPMYDGFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342


>gi|160881347|ref|YP_001560315.1| ribonucleoside-diphosphate reductase [Clostridium phytofermentans
           ISDg]
 gi|160430013|gb|ABX43576.1| Ribonucleoside-diphosphate reductase [Clostridium phytofermentans
           ISDg]
          Length = 342

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 83/334 (24%), Positives = 168/334 (50%), Gaps = 17/334 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++   + ++ +   +KY WA   Y +  NN W+P E+ +Q+D+  +     LTD ER   
Sbjct: 18  LIKGNTTNLREWNRIKYDWARLIYRTMLNNFWIPEEISLQEDVKQF---PYLTDGERNAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + + F    +S+ + N+   I R+++ PE    L  QAF+E +H+ ++ YI+ ++    
Sbjct: 75  DKIIAFLNFLDSIQSENLP-NISRYITAPEVSSLLNVQAFQEEIHAQSYSYILDTVTNPV 133

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
               +++++RE   +  +  +     Q  S         +   E    +     + EG++
Sbjct: 134 TRDRIYDIWREDKYLLERNKFIANIYQRFSD--------EPSDENFVRVVFANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    +++ ++++E   ++TK  +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLVLFQNIMKELRVEQKEMFTKGLEEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R M+      EIA+         +G+N    +QY+++++N+R   +GLE L+   T++P
Sbjct: 246 LREMMRTGVEHEIAWGQYVTDNQILGINNELIDQYIKYLSNQRLRAVGLEILYPEITKHP 305

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             W+    ++   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIESFSNINSTKTDFFEAKVTNYTKAAVFDFD 339


>gi|224372455|ref|YP_002606827.1| ribonucleotide-diphosphate reductase subunit beta [Nautilia
           profundicola AmH]
 gi|223589410|gb|ACM93146.1| ribonucleoside-diphosphate reductase, beta subunit [Nautilia
           profundicola AmH]
          Length = 346

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 12/333 (3%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N  ++ +  L  L Y WA+  +     N W P EV + +D   ++    L   E+ M 
Sbjct: 21  IINGCTEGIINLNKLSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMY 77

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
            + L      +S+  NN    +   ++ PE    ++RQA+EEA+HS ++  ++ S+ L+ 
Sbjct: 78  DKALSQLIFMDSIQTNNTPDHVNPWITAPEVNMCIVRQAYEEALHSQSYAVMVDSISLNT 137

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
            E++ M+R   ++  K  +     +        T   + D E    + V     EG++FY
Sbjct: 138 DEIYEMWRVDANLRKKNEFIGNVYEEWG-----TKALNGDDEAKIYMIVANQCLEGIYFY 192

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
            GFA    L RA KM+G A+  ++I RDE  H     ++  +IK E P L+T E  +  +
Sbjct: 193 NGFASFYVLARAGKMLGSAQMIRFIQRDEVTHTLLFANIFKEIKKEFPDLFTPEVIKNIK 252

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPF 320
            ML+ A  LE  +         +G++    +++ Q++AN+R   +GL+ LF     +NP 
Sbjct: 253 DMLYAAYELERDWGWYITNDEILGMSKELIDRFTQYLANKRAQAMGLDLLFPEVGLKNPI 312

Query: 321 PWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            W        + + NFFE  V  Y +G+    D
Sbjct: 313 SWFDGFSSFNEQKTNFFEGNVVNYSKGSLNLDD 345


>gi|153952438|ref|YP_001397460.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152939884|gb|ABS44625.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 340

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 156/348 (44%), Gaps = 13/348 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I        + D+++ +     +      KY WA + +     N W P EV    D 
Sbjct: 3   RKKIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDA 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA
Sbjct: 63  LDYRC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
            HS ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNK 172

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
             E P L+  E   K   M  +A  LEI +         +G      E+Y+ ++ ++R  
Sbjct: 233 HKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLS 292

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
            I L+ L+   ++P  W+ +      ++ NFFE++VT Y +G+    D
Sbjct: 293 AINLDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339


>gi|27375117|ref|NP_766646.1| ribonucleotide-diphosphate reductase subunit beta [Bradyrhizobium
           japonicum USDA 110]
 gi|27348253|dbj|BAC45271.1| ribonucleoside-diphosphate reductase beta subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 360

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/328 (25%), Positives = 141/328 (42%), Gaps = 28/328 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y WA+E +      HWM  EVP+  DL  W S   +TD ER ++ +   FF  S+  V 
Sbjct: 36  RYAWAYEFWKRQQQTHWMGEEVPLGADLNDWAS-GRVTDSERALLTQIFRFFTQSDIEVG 94

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           +N              +  +      E VH   +  ++ +LG+ + E F  +R    + A
Sbjct: 95  DNYFKRYIPIFQPLTVQMMMAAFTNMETVHIDAYALLLKTLGMPKTE-FEAFRGYAQMRA 153

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA++  ++              D+  +  + L +F    EGM  +  FA +L+  R NKM
Sbjct: 154 KADYMHEF------------GVDSVADVARTLAMFGAFTEGMALFASFAMLLNFPRHNKM 201

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+ +   + +RDESLH    I + ++   E     T+  +     +      LE  +  
Sbjct: 202 NGMGQIVSWSVRDESLHCEGIIKLFHEWHRET-GAVTRPVRDDIVDVAKTMVKLEENFVE 260

Query: 278 ETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-----------TENPFPWMSE 325
                G   G+       Y++++A+ R  Q+ + P+F +             +P PW+ E
Sbjct: 261 LAFGLGKIEGMLPEHIHAYVRYVADWRLAQLRIAPVFGFFEAKEGGFTQLKAHPLPWLVE 320

Query: 326 VIDLKKEKNFFETRVTEYQQGAE-LKWD 352
           +++  +  NFFE R TEY + A    WD
Sbjct: 321 ILNGVEHANFFEQRATEYSKAASRGSWD 348


>gi|289177076|ref|NP_001165949.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 3 [Homo
           sapiens]
 gi|55631160|ref|XP_528204.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
           isoform 3 [Pan troglodytes]
 gi|42794058|dbj|BAD11774.1| p53-inducible ribonucleotide reductase small subunit 2 long form
           [Homo sapiens]
 gi|119612246|gb|EAW91840.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_a [Homo
           sapiens]
          Length = 299

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 88/296 (29%), Positives = 142/296 (47%), Gaps = 28/296 (9%)

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
            EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +
Sbjct: 15  DEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCF 71

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173
              Q   E VHS  +  +I +   D  +   LFN    +P +  KA+WAL++        
Sbjct: 72  YGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------ 125

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    +    +  V +   EG++F   FA I  L +   M G+    + I RDE L
Sbjct: 126 -------DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 178

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H +F   +   +         K  +++ R ++ +A  +E  +  E +P G +G+N    +
Sbjct: 179 HCDFACLMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMK 231

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           QY++F+A+R   ++G   +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 232 QYIEFVADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 285


>gi|205356539|ref|ZP_03223302.1| ribonucleoside diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|205345544|gb|EDZ32184.1| ribonucleoside diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni CG8421]
          Length = 340

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 157/348 (45%), Gaps = 13/348 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I        + D+++ +     +      KY WA + +     N W P EV    D 
Sbjct: 3   RKRIYNPSSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDA 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA
Sbjct: 63  LDYRC--NLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
            HS ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNK 172

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+  E   K   M  +A  LEI +         +G      E+Y+ ++ ++R  
Sbjct: 233 RKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLS 292

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
            I L+ L+   ++P  W+ +      ++ NFFE++VT Y +G+    D
Sbjct: 293 AINLDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339


>gi|9634266|ref|NP_037805.1| ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera
           exigua MNPV]
 gi|6960505|gb|AAF33575.1|AF169823_45 ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera
           exigua MNPV]
          Length = 313

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 92/324 (28%), Positives = 154/324 (47%), Gaps = 26/324 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P+++   W  Y  A +  W   EV +  D   +     LTD+ER  I++ L FFA
Sbjct: 5   RKVLFPIQHIDLWASYKQALDCMWKVEEVDLSKDYDDF--TQKLTDNERNFIEKILAFFA 62

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFN 147
           +++S+V  NI+  + R +   E + +  +Q   + +H+  +  +I +L  DE     L N
Sbjct: 63  AADSIVNINIIEHMQRTVPELEAQYFYNQQVLIQCIHTEMYNLLIHALIKDEKKQEMLLN 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            +  +P +  KA WA++Y              D ++  L +  V + + EG++F   FA 
Sbjct: 123 GFENMPCVRRKAEWAMKYI-------------DDEKITLAERLVAFAIVEGVFFSGSFAA 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  +     M G+    + I RDE LH NF     N    +      K        M  E
Sbjct: 170 IFYMKTKGVMPGLTFSNELISRDEGLHTNFACLYYNTRVDQ------KLDAPTVNDMFSE 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  +E+ +  E +P+  VG+NA    +Y++F+A+R   Q+    ++ YTENPF +M+  I
Sbjct: 224 AVAIEMEFFAEALPESLVGMNANMMRKYIEFVADRLLVQLKYPKMY-YTENPFEFMN-NI 281

Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
            L+ + NFFE RV EY++    + 
Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGED 305


>gi|27769295|gb|AAH42468.1| Similar to ribonucleotide reductase M2 polypeptide [Homo sapiens]
          Length = 285

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 88/296 (29%), Positives = 142/296 (47%), Gaps = 28/296 (9%)

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
            EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +
Sbjct: 1   EEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCF 57

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173
              Q   E VHS  +  +I +   D  +   LFN    +P +  KA+WAL++        
Sbjct: 58  YGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------ 111

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    +    +  V +   EG++F   FA I  L +   M G+    + I RDE L
Sbjct: 112 -------DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 164

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H +F   +   +         K  +++ R ++ +A  +E  +  E +P G +G+N    +
Sbjct: 165 HCDFACLMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMK 217

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           QY++F+A+R   ++G   +F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 218 QYIEFVADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 271


>gi|86149605|ref|ZP_01067835.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|86151167|ref|ZP_01069382.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|86153704|ref|ZP_01071907.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|88597173|ref|ZP_01100408.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|121613260|ref|YP_999944.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|157414529|ref|YP_001481785.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|167004901|ref|ZP_02270659.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|218561895|ref|YP_002343674.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|283955655|ref|ZP_06373148.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|315123818|ref|YP_004065822.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|85839873|gb|EAQ57132.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|85841514|gb|EAQ58761.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85842665|gb|EAQ59877.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|87250215|gb|EAQ73173.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|88190234|gb|EAQ94208.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|112359601|emb|CAL34386.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|157385493|gb|ABV51808.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|283792880|gb|EFC31656.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|284925507|gb|ADC27859.1| ribonucleoside-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. jejuni IA3902]
 gi|307747171|gb|ADN90441.1| Ribonucleoside-diphosphate reductase subunit beta [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315017540|gb|ADT65633.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           jejuni subsp. jejuni ICDCCJ07001]
 gi|315928159|gb|EFV07477.1| ribonucleotide reductase, small chain family protein [Campylobacter
           jejuni subsp. jejuni DFVF1099]
 gi|315932030|gb|EFV10983.1| ribonucleotide reductase, small chain family protein [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 340

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 157/348 (45%), Gaps = 13/348 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I        + D+++ +     +      KY WA + +     N W P EV    D 
Sbjct: 3   RKRIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDA 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA
Sbjct: 63  LDYRC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
            HS ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNK 172

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+  E   K   M  +A  LEI +         +G      E+Y+ ++ ++R  
Sbjct: 233 RKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLS 292

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
            I L+ L+   ++P  W+ +      ++ NFFE++VT Y +G+    D
Sbjct: 293 AINLDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339


>gi|283955349|ref|ZP_06372848.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283793109|gb|EFC31879.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 340

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 158/348 (45%), Gaps = 13/348 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I        + D+++ +     +      KY WA + +     N W P EV    D 
Sbjct: 3   RKRIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDA 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    LT  E+ M         S +S  +NN+   I  +++ PE    L RQA+EEA
Sbjct: 63  LDYRC--NLTAGEKRMYDLVWSQLISMDSFQSNNLADNINPYITAPEINAVLARQAYEEA 120

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
            HS ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNK 172

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+  E   K   M  +A  LEI +         +G      E+Y+ ++ ++R  
Sbjct: 233 RKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLS 292

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
            I L+ L+   ++P  W+ +      ++ NFFE++VT Y +G+    D
Sbjct: 293 AINLDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339


>gi|149194868|ref|ZP_01871962.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2]
 gi|149135027|gb|EDM23509.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2]
          Length = 346

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 93/333 (27%), Positives = 157/333 (47%), Gaps = 12/333 (3%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N  ++ +  L  L Y WA+  +     N W P EV + +D   ++    L   E+ M 
Sbjct: 21  IINGCTEGIINLNKLSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMY 77

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
            + L      +S+  NN    +   ++ PE    L+RQAFEEA+HS ++  ++ S+ L+ 
Sbjct: 78  DKALSQLIFMDSIQTNNTPDHVNPWITAPEVNMCLVRQAFEEALHSQSYAVMVDSISLNT 137

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
            E++ M+R   ++  K  +     +            + D E    + V     EG++FY
Sbjct: 138 DEIYEMWRADENLRKKNEFIGNVYEEWG-----IKALNGDDEAKIYMIVANQALEGIYFY 192

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
            GFA    L RA KM+G A+  ++I RDE  H     ++  +IK E P L+T E  +  +
Sbjct: 193 NGFAAFYVLARAGKMLGSAQMIRFIQRDEVTHTLLFANIFKEIKKEFPDLFTPEVIRNIK 252

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPF 320
            ML+ A  LE  +         +GL+    +++ +++AN+R H +GLE LF     +NP 
Sbjct: 253 DMLYAAYELERDWGFYITNDEILGLSKELIDRFTKYLANKRAHAMGLELLFPEIGLKNPI 312

Query: 321 PWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
            W        + + NFFE  V  Y +G+    D
Sbjct: 313 SWFDSFSSFNEQKTNFFEGNVVNYSKGSLNLDD 345


>gi|165969130|ref|YP_001651030.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV]
 gi|164663626|gb|ABY65846.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV]
          Length = 339

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 91/333 (27%), Positives = 150/333 (45%), Gaps = 20/333 (6%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              +LP+++   W  Y +A +  W   EV +  D   W     L + ER  IK  L FFA
Sbjct: 7   RKVILPIQHEKLWRAYKTALDCMWKVEEVDLSRDYEDW--CTKLNERERFFIKHILAFFA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFN 147
           S++S+V  N++  +   +   E R +  +Q   E VHS  +  +I     +E    EL N
Sbjct: 65  SADSIVNINLIDYVRDAVGELEARYFYDQQILIENVHSEMYSLLIFEYIKNEKEQNELLN 124

Query: 148 MYREVPSITAKANWALQYTQTLS---------SPSFTTGTKDADQEFLQDLFVFYVVFEG 198
            + +V  +  KA WAL++T++              + T    +    L    V + + EG
Sbjct: 125 AFEDVKCVRKKAQWALKWTESSWWRDWLVNPLVKLWRTWRDGSSASKLARRMVAFAIVEG 184

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  +     M G+    + I RDE LH NF     N+   E   + + E  
Sbjct: 185 VFFSGSFAAIFFIKTKGIMPGLTFSNELISRDEGLHTNFACLYYNEYIDERDKMSSAE-- 242

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                M  EA  +E  +    +P   +G+N+ +  +Y++F+A+R   ++     F  T N
Sbjct: 243 --ILDMFVEAVNIEKEFFTSALPCDLLGMNSRAMCEYIEFVADRLLTELQQPKHFN-TPN 299

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           PF +M+  I L+ + NFFE RV EY++      
Sbjct: 300 PFNFMN-NISLEGKTNFFERRVGEYKRFGAGAD 331


>gi|57237291|ref|YP_178304.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           jejuni RM1221]
 gi|148926379|ref|ZP_01810063.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|57166095|gb|AAW34874.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           jejuni RM1221]
 gi|145844771|gb|EDK21876.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|315057661|gb|ADT71990.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 340

 Score =  200 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 157/348 (45%), Gaps = 13/348 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I        + D+++ +     +      KY WA + +     N W P EV    D 
Sbjct: 3   RKRIYNPNSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDA 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA
Sbjct: 63  LDYRC--NLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
            HS ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNK 172

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+  E   K   M  +A  LEI +         +G      E+Y+ ++ ++R  
Sbjct: 233 RKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLS 292

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
            I L+ L+   ++P  W+ +      ++ NFFE++VT Y +G+    D
Sbjct: 293 AINLDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339


>gi|260220050|emb|CBA27200.1| Ribonucleoside-diphosphate reductase subunit alpha [Curvibacter
            putative symbiont of Hydra magnipapillata]
          Length = 1306

 Score =  200 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 112/184 (60%), Positives = 141/184 (76%)

Query: 169  LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
            +  P+F TGT ++DQ  L+ L VF  + EG++FY GF QIL+LGR NKM G AEQYQYI+
Sbjct: 1123 IMDPNFHTGTSESDQVLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYIL 1182

Query: 229  RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
            RDES+H NFGID+INQ+K+ENPHLWT EF+ + + +  +A  LE  YA +TMP+G +G+N
Sbjct: 1183 RDESMHCNFGIDLINQLKLENPHLWTPEFKAEIKALFEKAVELEYRYAEDTMPRGVLGMN 1242

Query: 289  APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
            A   + Y+++IANRR  QIGLEPLF   ENPFPWMSE+IDLKKE+NFFETRV EYQ G  
Sbjct: 1243 ASMFKGYLRYIANRRATQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGA 1302

Query: 349  LKWD 352
            L WD
Sbjct: 1303 LSWD 1306


>gi|228861726|ref|YP_002854746.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus]
 gi|226425174|gb|ACO53586.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus]
          Length = 339

 Score =  200 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 91/333 (27%), Positives = 155/333 (46%), Gaps = 20/333 (6%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              +LP+++   W+ Y +A +  W   EV +  D   W+  N L +DER  +K  L FFA
Sbjct: 7   RKVILPIQHANLWKAYKTALDCVWKVEEVDLTKDWEDWQ--NKLNEDERHFLKHILAFFA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
           S++S+V  N++  +   ++  E R +  +Q F E VHS  +  +I     DE E   L N
Sbjct: 65  SADSIVNINLIDYVRGKVAELEARYFYDQQIFIENVHSEMYSLLIFEYIKDEQEKDTLLN 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ---------DLFVFYVVFEG 198
            + ++  +  KA WAL++T++     +           L             V + + EG
Sbjct: 125 AFNDIECVRKKAQWALKWTESAWWQDWLVNPATRWCNRLMGKQTPSELAVRMVAFAIVEG 184

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  +     M G+    + I RDE LH NF     N+   E+  L +    
Sbjct: 185 VFFSGSFAAIFYIKTKGVMPGLTFSNELISRDEGLHTNFACLYYNEYIPEHDKLSS---- 240

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
           ++   M  EA  +E  +    +P   +G+N  S  +Y++F+A+R    +     F  + N
Sbjct: 241 ERILDMFIEAVEIEKEFFKTALPCSLLGMNTESMCRYIEFVADRLLVDLNQPKHFMAS-N 299

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           PF +M+  I ++ + NFFE RV EY++    + 
Sbjct: 300 PFNFMT-NISMEGKTNFFERRVGEYRRFGAGQD 331


>gi|57505748|ref|ZP_00371674.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           upsaliensis RM3195]
 gi|57016021|gb|EAL52809.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           upsaliensis RM3195]
          Length = 340

 Score =  200 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 159/348 (45%), Gaps = 13/348 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I       ++ D+++ +     +      KY WA + +     N W P EV    D 
Sbjct: 3   RKRIYNPNSNESLSDRKVFSGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTRDA 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA
Sbjct: 63  LDYRCH--LTAAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
            HS ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   
Sbjct: 121 NHSKSYAVMVETICDNTDLIYEMEKHDATLREKNDFISGIYEELAG--------DVDDNK 172

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+ ++   K  +M   A  LEI +         +G      E+Y+ ++ ++R  
Sbjct: 233 RKERPDLFNEQNIDKIYSMFKRAGELEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLI 292

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
            I L+ ++   ++P  W+ +      ++ NFFE++VT Y +G+    D
Sbjct: 293 AINLDKIYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339


>gi|57168357|ref|ZP_00367491.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           coli RM2228]
 gi|305432773|ref|ZP_07401932.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           coli JV20]
 gi|57020165|gb|EAL56839.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           coli RM2228]
 gi|304444170|gb|EFM36824.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           coli JV20]
          Length = 340

 Score =  199 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 157/348 (45%), Gaps = 13/348 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I        + D+++ +     +      KY WA + +     N W P EV    D 
Sbjct: 3   RKRIYNPGSNETLTDRKVFSGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDA 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA
Sbjct: 63  LDYRC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
            HS ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNK 172

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+ +    K   M  +A  LEI +         +G      E+Y+ ++ ++R  
Sbjct: 233 RKERPDLFNENNINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLV 292

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
            I L+ ++   ++P  W+ +      ++ NFFE++VT Y +G+    D
Sbjct: 293 AINLDKIYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339


>gi|296227442|ref|XP_002759378.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
           isoform 2 [Callithrix jacchus]
          Length = 299

 Score =  199 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 88/296 (29%), Positives = 141/296 (47%), Gaps = 28/296 (9%)

Query: 57  TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
            EV +  DL  W   N L  DE+  I   L FFA+S+ +V  N+V    + +  PE R +
Sbjct: 15  DEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCF 71

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173
              Q   E VHS  +  +I +   D  +   LFN    +P +  KA+WAL++        
Sbjct: 72  YGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------ 125

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                    +    +  V +   EG++F   FA I  L +   M G+    + I RDE L
Sbjct: 126 -------DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 178

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
           H +F   +   +         K  +++ R ++ +A  +E  +  E +P G +G+N    +
Sbjct: 179 HCDFACLMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMK 231

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           QY++F+A+R   ++G    F   ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 232 QYIEFVADRLLVELGFSKFF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 285


>gi|269862698|ref|XP_002650940.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220065381|gb|EED43116.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 332

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 133/306 (43%), Gaps = 30/306 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 54  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 110

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +L  D
Sbjct: 111 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 170

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LFN    +PSI  KA WA ++  + +S                   V +   EG
Sbjct: 171 KEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFD--------------TRCVAFACVEG 216

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   I  +          
Sbjct: 217 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNK---------C 267

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G + ++  +  
Sbjct: 268 TVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVST- 326

Query: 319 PFPWMS 324
           PF +M 
Sbjct: 327 PFDFME 332


>gi|109287926|ref|YP_654620.1| hypothetical protein MIV048L [Invertebrate iridescent virus 3]
 gi|123878658|sp|Q197B2|RIR2_IIV3 RecName: Full=Probable ribonucleoside-diphosphate reductase small
           subunit 048L; AltName: Full=Ribonucleotide reductase
           small subunit
 gi|106073549|gb|ABF82078.1| hypothetical protein MIV048L [Aedes taeniorhynchus iridescent
           virus]
          Length = 376

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 75/331 (22%), Positives = 146/331 (44%), Gaps = 12/331 (3%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           +D     P +Y   ++K+ +  + HW   E+ MQDD+  W   N L++ E+  + + L F
Sbjct: 48  ADRTTFKPFEYPGCYDKWDTHEHAHWSFKELNMQDDVHDWH--NRLSEAEKTFLVQILRF 105

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
           F   +  VA   V    +    PE R  L      EA+H  ++ ++I++L L +   +  
Sbjct: 106 FTQGDVDVAVGYVQ-YLQLFQQPEVRMMLFSFGAREAMHIASYSHLISTLNLPDV-TYQE 163

Query: 149 YREVPSITAKANWALQYTQTLSSP----SFTTGTKDAD-QEFLQDLFVFYVVFEGMWFYT 203
           + +  ++  K  +        ++     ++     D   +E    + +F    EG+  ++
Sbjct: 164 FLKYKAMKDKHEFVFNSRFKSTTVGRFFNYLLFGYDTHLEEIAVKIALFSAFIEGVQLFS 223

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT-KEFQQKSR 262
            F  +L+  R   M  + +  Q+ + DE+ H N  +++ + + +EN         + + R
Sbjct: 224 SFIMLLNFTRHGLMKKMGQIIQWSIADETHHTNSMMELFSTLVVENKSHIRLGVLEARVR 283

Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
               +   LE  +       G    L A   + Y+++I NRR   +G  PL+   ENP P
Sbjct: 284 DTARKIVQLEDGFIDLAFSMGEMRQLTADDVKSYIRYITNRRLQTMGYLPLYSVVENPLP 343

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA-ELKW 351
           W+ ++++     NFFE + TEY + +    W
Sbjct: 344 WVEDLLNAPSHTNFFENKPTEYAKASLTGDW 374


>gi|257462865|ref|ZP_05627271.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp.
           D12]
          Length = 348

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 87/361 (24%), Positives = 161/361 (44%), Gaps = 24/361 (6%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +   E   ++ +++++    +++  L  +K+ WA + Y +   N W+P +V
Sbjct: 1   MKAAVDRKRLFNPEGNDSLLERKIIKGNSTNLFNLNNVKFSWATQLYRTMMANFWIPEKV 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   ++    LT  ER      L F    +S+  NN+   I  +++ PE    L  
Sbjct: 61  DLTQDKNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNLP-NISDYITAPEVNLLLSI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           Q F+EA+HS ++QYII S+   E    +++ +R+   +  +  +  Q  Q          
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKESRDLIYDKWRDDKVLFERNRFIAQIYQDFI------- 169

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
            ++   +    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+  
Sbjct: 170 -EETSDQNFAKVLIANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVL 228

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +I +IK           +++ R M   A   EI +    +    +G+   + E Y +
Sbjct: 229 FQKIIREIKA---ENHNFFEEEEIRAMFRTAVEQEILWTEHIIGNRILGITTETTEAYTK 285

Query: 298 FIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-W 351
           ++AN R   IGL P+++  T+NP+  +    D +     + NFFE  VT Y   + +  W
Sbjct: 286 WLANERLRTIGLAPMYEEFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGW 345

Query: 352 D 352
           D
Sbjct: 346 D 346


>gi|118443949|ref|YP_878438.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           novyi NT]
 gi|118134405|gb|ABK61449.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           novyi NT]
          Length = 342

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 88/336 (26%), Positives = 169/336 (50%), Gaps = 17/336 (5%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M+N  + ++ +   +KY WA E Y +  NN W+P E+ + +D+  +     LTD ER 
Sbjct: 16  ESMINGNTTNLREWNRIKYNWANELYRTMLNNFWIPEEISLNEDVKQF---PYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++ PE    L  Q F+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSVQSENLP-NISRYITAPEVSSLLNVQTFQEEIHAQSYSYILDTVTN 131

Query: 141 D--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
                ++++ +RE  ++  +  +     Q+          ++   E      +   + EG
Sbjct: 132 PITRDKIYDQWREDKNLLERNKFIAGIYQSF--------NENPTTENFLRTIMANYILEG 183

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K ENP ++T+   
Sbjct: 184 IYFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLILFQNIIKELKNENPDIFTESIM 243

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317
           ++ R M+      EI +         +G+N    E+Y+++++N R + IGLE L+   TE
Sbjct: 244 EEFRMMMKMGVEHEIKWGQYVTNNEILGINDNLIEKYIKYLSNLRLNAIGLEVLYPEITE 303

Query: 318 NPFPWMSEVIDL-KKEKNFFETRVTEYQQGAELKWD 352
           +P  W+     L   + +FFE +VT Y + A   +D
Sbjct: 304 HPMEWIENFSKLNNTKTDFFEAKVTNYTKAAAFDFD 339


>gi|256846215|ref|ZP_05551673.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|256719774|gb|EEU33329.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
           sp. 3_1_36A2]
          Length = 344

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 85/353 (24%), Positives = 160/353 (45%), Gaps = 23/353 (6%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               +   E    ++ ++++    +++  L  ++  WA + Y +   N W+P +V +  D
Sbjct: 2   DRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRCQWANQLYRTMMANFWIPEKVDLTQD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              ++    LT  ER      L F    +S+  NNI   I  H++ PE    L  Q F+E
Sbjct: 62  KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQE 117

Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           A+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q            +  
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMV 229

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +IK + P+ ++ E      +M   A   EI +    +    +G+ + + E Y +++AN 
Sbjct: 230 KEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANE 286

Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           R   +GLEPLF  + +NP+  +    D +     + NFFE  VT Y   + + 
Sbjct: 287 RLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339


>gi|154149104|ref|YP_001405803.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           hominis ATCC BAA-381]
 gi|153805113|gb|ABS52120.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           hominis ATCC BAA-381]
          Length = 340

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 160/348 (45%), Gaps = 14/348 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I        + ++++ +     +      KY WA + +     N W P EV   DD+
Sbjct: 3   RKKIYNPFSNETLTERKIFSGNPQGILNFTKAKYVWALKLWDIMEANTWFPREVDTTDDV 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     LT  E+ M +       S +S   NN+   I  +++ PE    L RQA+EEA
Sbjct: 63  RDYN--FNLTPAEKRMYELVWSQLISMDSFQTNNLADNINPYITAPEINAILARQAYEEA 120

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
            HS ++  ++ ++  +  +++ M +    +  K ++     + L+         + D+  
Sbjct: 121 NHSKSYAVMVEAICQNTDQIYEMEKFDDVLREKNDYISSIYEELAG--------EVDENK 172

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V   + EG++FY+GF  I +L R+ KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 173 LLLAMVANQILEGIYFYSGFCSIYALARSGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+  +   K   M  +A  LEI +         +GL     E+Y+ ++ + R  
Sbjct: 233 RKERPDLFNDKNIAKIYEMFEKAGELEIKWGKYITQNQIMGLTDEIIEEYIHYLVDNRLS 292

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
            IGL   +    +P  W+ +      ++ NFFE++VT Y +G+ L +D
Sbjct: 293 AIGLNKKYN-ARHPIKWVDDFAKFNDQKSNFFESKVTNYSKGS-LNFD 338


>gi|222824493|ref|YP_002576067.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           lari RM2100]
 gi|222539714|gb|ACM64815.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           lari RM2100]
          Length = 340

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I   +    ++D+++ N     +      KY WA + +     N W P EV    D
Sbjct: 2   NRKRIYNPKSNETLNDRKVFNGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              ++    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EE
Sbjct: 62  ALDYRC--NLTVAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEE 119

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A HS ++  ++ ++  +   ++ M +   ++  K ++     + L+         + D  
Sbjct: 120 ANHSKSYAVMVEAICENTDLIYEMEKHDETLREKNDFISSIYEELAG--------EVDDN 171

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L    V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 172 KLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINS 231

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+      K   M  +A  LEI +         +G      E+Y+ ++ ++R 
Sbjct: 232 VRKERADLFNDTNVSKIYDMFKKAGELEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRL 291

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             I L+ ++   ++P  W+ +      ++ NFFE++VT Y +G+ L +D
Sbjct: 292 IAINLDKIYNV-KHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-LSFD 338


>gi|323337480|gb|EGA78728.1| Rnr4p [Saccharomyces cerevisiae Vin13]
          Length = 328

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/333 (21%), Positives = 135/333 (40%), Gaps = 27/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L   S    + P+KY   W  Y     + W   E+ +  D   ++    LTDD++
Sbjct: 6   KDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ---KLTDDQK 62

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L    SS++LV   ++      L NPE + +   Q   E ++S  +  ++ +  
Sbjct: 63  TYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFF 122

Query: 140 LDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
            D   +  F     +P +  K  +  ++                D     +  V +   E
Sbjct: 123 KDPKNIPLFKEIANLPEVKHKTAFIERWI-------------SNDDSLYAERLVAFAAKE 169

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++    +A +  L     M G+A   + I RD   + +F   +   ++       TK  
Sbjct: 170 GIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLR-------TKPN 222

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    ++ EA  +E  Y   ++P    G++  S   Y++F+A+      G E  +    
Sbjct: 223 PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV- 281

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M +V     +  FFE +V++YQ+ +++ 
Sbjct: 282 NPFEFMEDVATA-GKTTFFEKKVSDYQKASDMS 313


>gi|315637824|ref|ZP_07893014.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           upsaliensis JV21]
 gi|315482065|gb|EFU72679.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
           upsaliensis JV21]
          Length = 340

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 159/348 (45%), Gaps = 13/348 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I       ++ D+++ +     +      KY WA + +     N W P EV    D 
Sbjct: 3   RKRIYNPNSNESLGDRKVFSGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTRDA 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA
Sbjct: 63  LDYRC--NLTAAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
            HS ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDATLREKNDFISGIYEELAG--------DVDDNK 172

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+ ++   K  +M   A  LEI +         +G      E+Y+ ++ ++R  
Sbjct: 233 RKERPDLFNEQNIDKIYSMFKRAGELEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLI 292

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
            I L+ ++   ++P  W+ +      ++ NFFE++VT Y +G+    D
Sbjct: 293 AINLDRIYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339


>gi|68304258|ref|YP_249726.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|67973087|gb|AAY84053.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus]
          Length = 318

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 86/326 (26%), Positives = 144/326 (44%), Gaps = 26/326 (7%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
               LLP+     W+ Y  A + HW   E+ M  D   W     L D ER  +K  L FF
Sbjct: 5   SRKTLLPIVNEDLWQSYKKAVDCHWKVEEIDMSKDFDDWNK--KLNDKERFFLKHVLAFF 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LF 146
           A+++ +V  NI+  +   +   E   +  +Q F E VH+  +  ++     D  E   + 
Sbjct: 63  AAADVIVNTNIIEHMQSAVPELEASFFYAQQTFIECVHTEMYNILVVEYIKDPQECDRIL 122

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           N    + S+  KA WA ++ +                    +  V + + EG++F   FA
Sbjct: 123 NAIEHIDSVKQKAAWAQKWIE-------------NQSATFAERMVAFAIVEGVFFSGSFA 169

Query: 207 QILSLG--RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
            I  +   +   + G+    + I RDE LH +F     N+   E      K  + K  +M
Sbjct: 170 AIYYIKDSKKGALPGLTYSNELISRDEGLHTDFACLYYNKYIPE----KNKLSKTKVLSM 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             EA  +E  +    +P   +G+N+ S  +Y++F+A+R   ++G +  F  T NPF +M+
Sbjct: 226 FVEAVDIEKDFFTNALPVAMLGMNSQSMCEYIEFVADRLLFELGYDKHFN-TANPFEFMN 284

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
             I L+ + NFFE RV EY++     
Sbjct: 285 -NISLEGKTNFFEKRVGEYKRFGAAN 309


>gi|257458932|ref|ZP_05624052.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           gracilis RM3268]
 gi|257443636|gb|EEV18759.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
           gracilis RM3268]
          Length = 340

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 88/349 (25%), Positives = 153/349 (43%), Gaps = 14/349 (4%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               I        + D+++       +      KY WA + +     N W P EV   DD
Sbjct: 2   DRKKIYNPFSDETLTDRKVFGGNPQGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  +     LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EE
Sbjct: 62  VRDYN--FNLTSAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEE 119

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           A HS ++  ++ ++  +   ++ M +    +  K ++     + L+              
Sbjct: 120 ANHSKSYAVMVEAICENTDLIYEMEKHDDMLRRKNDYISSVYEELAGEVSDDKL------ 173

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN 
Sbjct: 174 --LLAMVANQILEGIYFYSGFTSIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINS 231

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ E   L+ K    K   M   A  LEI +         +G      E+Y+ ++ ++R 
Sbjct: 232 VRKERADLFNKRNVDKIYEMFETAGNLEIDWGKYITDNQIMGFTDDIIEEYIHYLVDQRL 291

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
             IGLE  +   ++P  W+ +      ++ NFFE++VT Y +G+ L +D
Sbjct: 292 LAIGLEKRYD-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-LSFD 338


>gi|51830370|gb|AAU09736.1| YGR180C [Saccharomyces cerevisiae]
          Length = 345

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 136/333 (40%), Gaps = 27/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L   S    + P+KY   W  Y     + W   E+ +  D   ++    LTDD++
Sbjct: 23  KDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ---KLTDDQK 79

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L    SS++LV   ++      L NPE + +   Q   E +HS  +  ++ +  
Sbjct: 80  TYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIHSEVYSMMVDAFF 139

Query: 140 LDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
            D   +  F     +P +  KA +  ++                D     +  V +   E
Sbjct: 140 KDPKNIPLFKEIANLPEVKHKAAFIERWI-------------SNDDSLYAERLVAFAAKE 186

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++    +A +  L     M G+A   + I RD   + +F   +   ++       TK  
Sbjct: 187 GIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLR-------TKPN 239

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    ++ EA  +E  Y   ++P    G++  S   Y++F+A+      G E  +    
Sbjct: 240 PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV- 298

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M +V     +  FFE +V++YQ+ +++ 
Sbjct: 299 NPFEFMEDVATA-GKTTFFEKKVSDYQKASDMS 330


>gi|38683666|gb|AAR26843.1| FirrV-1-A19 [Feldmannia irregularis virus a]
          Length = 342

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 141/327 (43%), Gaps = 30/327 (9%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
           +NQ    ++   +  Y       W   E+ + +D+A W   +  ++DE+  I   L FFA
Sbjct: 32  LNQKTEFEFADVYALYKKEIACFWTVEEIDLNEDVACW---DKCSEDEQRFIGHILAFFA 88

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
           S + +V  N+ +     +  P+ R +   Q   E++H  T+  +I +   D  +   M R
Sbjct: 89  SLDQIVMENVSVNFGDEIKIPQIRSHFAMQNAIESIHGETYALLIQTYIKDPEKQVTMLR 148

Query: 151 EVPSIT---AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
            +  +     KA W   +              D +   L +  V +   EG+ F   F  
Sbjct: 149 SIQEMPIITKKAQWVTAWM-------------DPEVASLAERLVAFTCVEGVQFSGAFCA 195

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
           I  L +  +  G+      I RDE LH    + + N +K   P             +  +
Sbjct: 196 IYWLKKQGRFRGLCFANSLIARDEGLHAEGSVMIYNHLKHRLPV-------AVVHDIFTD 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           A  LE  +  E++P   +G+NA +   Y++++++    ++G   LF  T+NPF WM+ +I
Sbjct: 249 AVALEKEFIRESLPVSLIGINADTMSSYIEYVSDFWIQRLGYPKLFG-TKNPFEWMT-MI 306

Query: 328 DLKKEKNFFETRVTEYQQGAEL--KWD 352
            ++ + NFFE RV EY +   +  + D
Sbjct: 307 GMEGKSNFFEGRVAEYAKAGSMTNEDD 333


>gi|119485472|ref|ZP_01619800.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106]
 gi|119457228|gb|EAW38354.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106]
          Length = 359

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 85/357 (23%), Positives = 159/357 (44%), Gaps = 28/357 (7%)

Query: 7   LSPIQAGEKRVNVDDKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           ++PI   E   +V+++ +     +++ QL  ++Y WA   Y     N W+P ++ +  D+
Sbjct: 18  INPIFNPEGNDHVENRSIWFGDTTNLMQLNDVRYPWAVGLYKQMRENFWVPEKLDITQDV 77

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     LT DER      L +    +S+   NI   +   ++ PE    +  Q  +EA
Sbjct: 78  VDY---GNLTTDERRAFDGILSYLTFLDSIQTCNIP-HLKSSITAPEISLCMAEQVSQEA 133

Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +H+ ++QY+I ++   +    ++  +R    +  +  +  ++ Q             ++ 
Sbjct: 134 MHNQSYQYMIETIIPSDRRSFVYEFWRTDSVLHNRCEYIARFYQNYID------NPTSEN 187

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            F+  L  F  + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I 
Sbjct: 188 YFVALLADF--LLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 245

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           +     PH       ++   M   A   E  + +  + +  +G+   S EQY +++AN R
Sbjct: 246 EAMQTFPH-----SVEQIYEMFDTAVQHECRWTNHIVGRNILGITETSTEQYTKYLANAR 300

Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQ-GAELKWD 352
              IGL+PL+    Y+++P+  +    D KK    + NFFE  VT Y        WD
Sbjct: 301 LRSIGLKPLYTDPRYSKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVGGWD 357


>gi|6321619|ref|NP_011696.1| Rnr4p [Saccharomyces cerevisiae S288c]
 gi|1710402|sp|P49723|RIR4_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 2;
           AltName: Full=Ribonucleotide reductase R2 subunit 2;
           AltName: Full=Ribonucleotide reductase small subunit 2
 gi|15826570|pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer
 gi|52695527|pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
           From Saccharomyces Cerevisiae
 gi|52695528|pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
           From Saccharomyces Cerevisiae
 gi|915546|gb|AAB72236.1| Rnr4p [Saccharomyces cerevisiae]
 gi|1323319|emb|CAA97206.1| RNR4 [Saccharomyces cerevisiae]
 gi|285812375|tpg|DAA08275.1| TPA: Rnr4p [Saccharomyces cerevisiae S288c]
 gi|323304781|gb|EGA58540.1| Rnr4p [Saccharomyces cerevisiae FostersB]
 gi|323308943|gb|EGA62174.1| Rnr4p [Saccharomyces cerevisiae FostersO]
          Length = 345

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 136/333 (40%), Gaps = 27/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L   S    + P+KY   W  Y     + W   E+ +  D   ++    LTDD++
Sbjct: 23  KDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ---KLTDDQK 79

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L    SS++LV   ++      L NPE + +   Q   E ++S  +  ++ +  
Sbjct: 80  TYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFF 139

Query: 140 LDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
            D   +  F     +P +  KA +  ++                D     +  V +   E
Sbjct: 140 KDPKNIPLFKEIANLPEVKHKAAFIERWI-------------SNDDSLYAERLVAFAAKE 186

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++    +A +  L     M G+A   + I RD   + +F   +   ++       TK  
Sbjct: 187 GIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLR-------TKPN 239

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    ++ EA  +E  Y   ++P    G++  S   Y++F+A+      G E  +    
Sbjct: 240 PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV- 298

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M +V     +  FFE +V++YQ+ +++ 
Sbjct: 299 NPFEFMEDVATA-GKTTFFEKKVSDYQKASDMS 330


>gi|151943458|gb|EDN61769.1| ribonucleotide reductase [Saccharomyces cerevisiae YJM789]
 gi|190406805|gb|EDV10072.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a]
 gi|256270921|gb|EEU06048.1| Rnr4p [Saccharomyces cerevisiae JAY291]
 gi|259146684|emb|CAY79941.1| Rnr4p [Saccharomyces cerevisiae EC1118]
 gi|323333575|gb|EGA74969.1| Rnr4p [Saccharomyces cerevisiae AWRI796]
 gi|323348450|gb|EGA82695.1| Rnr4p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 345

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 70/333 (21%), Positives = 135/333 (40%), Gaps = 27/333 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L   S    + P+KY   W  Y     + W   E+ +  D   ++    LTDD++
Sbjct: 23  KDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ---KLTDDQK 79

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I   L    SS++LV   ++      L NPE + +   Q   E ++S  +  ++ +  
Sbjct: 80  TYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFF 139

Query: 140 LDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
            D   +  F     +P +  K  +  ++                D     +  V +   E
Sbjct: 140 KDPKNIPLFKEIANLPEVKHKTAFIERWI-------------SNDDSLYAERLVAFAAKE 186

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++    +A +  L     M G+A   + I RD   + +F   +   ++       TK  
Sbjct: 187 GIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLR-------TKPN 239

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    ++ EA  +E  Y   ++P    G++  S   Y++F+A+      G E  +    
Sbjct: 240 PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV- 298

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           NPF +M +V     +  FFE +V++YQ+ +++ 
Sbjct: 299 NPFEFMEDVATA-GKTTFFEKKVSDYQKASDMS 330


>gi|269865627|ref|XP_002651990.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063361|gb|EED42066.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 290

 Score =  196 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 85/301 (28%), Positives = 137/301 (45%), Gaps = 31/301 (10%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
             +  W   EV M  D   + +   LT +E+  IK  L FFA+S+ +V  N+V      +
Sbjct: 2   HESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEV 58

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165
              E + +   Q   E +HS  +  +I +L  D+ E   LFN    +PSI  KA WA ++
Sbjct: 59  QILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKW 118

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
             + +S                   V +   EG++F   FA I  L +   M G+    +
Sbjct: 119 IASDTSFD--------------TRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNE 164

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I RDE LH +F   +   I  +               ++ EA  +E  +  E++P   +
Sbjct: 165 LISRDEGLHTDFACLLHKYINNK---------CTVIEDIVREAVAIEQEFLSESLPVSLI 215

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           G+N     QY++F+A+R    +G + ++  + NPF +M E I L+ + NFFE R T YQ+
Sbjct: 216 GMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERRETNYQK 273

Query: 346 G 346
           G
Sbjct: 274 G 274


>gi|15079087|ref|NP_149839.1| 376L [Invertebrate iridescent virus 6]
 gi|82012049|sp|Q91FE8|RIR2_IIV6 RecName: Full=Probable ribonucleoside-diphosphate reductase small
           subunit 376L; AltName: Full=Ribonucleotide reductase
           small subunit
 gi|15042456|gb|AAK82236.1|AF303741_377 376L [Invertebrate iridescent virus 6]
          Length = 360

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 79/349 (22%), Positives = 137/349 (39%), Gaps = 31/349 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
            N   P  Y   + K+     +HW+P+EVPM DD+  WK  N L D++R  +     FF 
Sbjct: 7   RNYYKPFTYPEFYNKWDKHEKSHWLPSEVPMHDDVNDWK--NRLNDNQRDFLTNIFRFFT 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             +  VA+            PE    +   A  E VH   + Y++ +LG+ E   +  + 
Sbjct: 65  QGDVDVASAYYTQYLPFFKLPEVTMMMGGFAGREGVHIDAYSYLLETLGMPEA-TYKEFL 123

Query: 151 EVPSITAKANWALQYTQT--LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
               +  K ++  +++ +  +        T +  +     + +F    EGM  ++ FA +
Sbjct: 124 MYEEMKDKQDYIKKFSDSRHILGKGEENLTTEDKEHIAAGIALFSGFTEGMQLFSTFAML 183

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTM 264
           L       M G+ +   + + DE+ H    I++      EN            Q+    +
Sbjct: 184 LIFPLNGFMKGMGQIVTWSIVDETQHTEGMIELFKVFVEENKTGDQPIRPSVLQETVYKI 243

Query: 265 LHEATLLEIAYAHETMP------------------KGFVGLNAPSCEQYMQFIANRRCHQ 306
             E   LE A+                        K F GL     + Y+++IA+RR + 
Sbjct: 244 AKEMVGLEEAFIDLVFKKYKDEPINDDNDLETKDNKDFFGLTPQRLKAYIKYIADRRLNL 303

Query: 307 IGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQ-QGAELKW 351
           +G + +F    Y  NP P +  +I+     NFFE R T+Y     +  W
Sbjct: 304 MGYKSIFNLEPYPTNPLPELEIMINAPTHTNFFENRSTDYANVSTKGTW 352


>gi|168186576|ref|ZP_02621211.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum C str. Eklund]
 gi|169295422|gb|EDS77555.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
           botulinum C str. Eklund]
          Length = 342

 Score =  195 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 86/334 (25%), Positives = 165/334 (49%), Gaps = 13/334 (3%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + ++N  + ++ +   +KY WA E Y +  NN W+P E+ + +D+  +   + LTD ER 
Sbjct: 16  ESIINGSTTNLREWNRIKYNWANELYRNMLNNFWIPEEISLNEDVKQF---SYLTDGERN 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
              + + F    +S+ + N+   I R+++ PE    L  QAF+E +H+ ++ YI+ ++  
Sbjct: 73  AFDKIISFLNFLDSIQSENLP-NISRYITAPEVSSILNIQAFQEEIHAQSYSYILDTVTN 131

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
                  + R+      + +  L       +  +    ++   E      +   + EG++
Sbjct: 132 P------ITRDKIYDQWREDKNLLERNKFIAGIYQRFNENPTTENFLRTIMANYILEGIY 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF+   +L R  KM   +  ++YI RDE  HL    ++I ++K EN  ++T+   ++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLILFQNIIKELKNENLDIFTESIIEE 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R M+      EI +         +G+N    E+Y+++++N R + IGLE L+   TE+P
Sbjct: 246 FRMMMKTGVEHEIKWGQYVTNNEILGINNNLIEKYIKYLSNLRLNAIGLEVLYPEITEHP 305

Query: 320 FPWMSEVIDL-KKEKNFFETRVTEYQQGAELKWD 352
             W+     L   + +FFE +VT Y + A   +D
Sbjct: 306 MEWIENFSKLNNTKTDFFEAKVTNYTKAAAFDFD 339


>gi|115378653|ref|ZP_01465803.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella
           aurantiaca DW4/3-1]
 gi|115364319|gb|EAU63404.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella
           aurantiaca DW4/3-1]
          Length = 288

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 89/276 (32%), Positives = 150/276 (54%), Gaps = 6/276 (2%)

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           +TD ER +I R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H   +  
Sbjct: 1   MTDAERHLIHRLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLT 60

Query: 134 IITSLGLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           ++ +   D     + F     +PSI  KA + L++  ++   +    T++  + FL +L 
Sbjct: 61  LLDTYVPDPADRAKAFAAIDNIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLLNLI 119

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
            F    EG++F+  FA +  L     + G+A    ++ RDES H+ F  + I   + E P
Sbjct: 120 CFAGCIEGLFFFAAFAYVYFLRSKGLLHGLAAGTNWVFRDESTHMAFAFEAIRVARQEEP 179

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
            L+    Q     M+ EA   E  +A + +  G  GL+     QY++++A++R   +GL 
Sbjct: 180 DLFDARMQADVVAMMREAVECETLFAQDLLSGGVAGLSVQEMRQYLEYVADQRLTMLGLA 239

Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           P+F+  +N  P+M  + D+++  NFFE RV+ YQ  
Sbjct: 240 PVFRV-KNSLPFMD-LQDVQELTNFFERRVSAYQVA 273


>gi|74229799|ref|YP_309003.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV]
 gi|72259713|gb|AAZ67484.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV]
          Length = 318

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/326 (26%), Positives = 144/326 (44%), Gaps = 26/326 (7%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
               L P+     W+ Y  A + HW   E+ M  D   W   N L D ER  +K  L FF
Sbjct: 5   SRKTLFPIVNEDLWQSYKKALDCHWKVEEIDMSKDFDDWN--NKLNDKERFFLKHVLAFF 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LF 146
           A+++ +V  NI+  +   +   E   +  +Q   E VH+  +  ++     D  E   + 
Sbjct: 63  AAADVIVNTNIIEHMQSAVPEMEASFFYAQQTSIECVHTEMYNILVVEYIKDPQECDRIL 122

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
           N    + S+  KA WA ++ ++                   +  V + + EG++F   FA
Sbjct: 123 NAIEHIDSVKRKATWAQKWIES-------------QTATFAERMVAFAIVEGVFFSGSFA 169

Query: 207 QILSLG--RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
            I  +   +   + G+    + I RDE LH +F     N+   +      K  + K   M
Sbjct: 170 AIYYIKDTKKGALPGLTYSNELISRDEGLHTDFACLYYNKYIAKED----KLSESKVLNM 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
             EA  +E  +    +P   +G+NA S  +Y++F+A+R   ++G E  FK T NPF +M+
Sbjct: 226 FKEAVDIEKDFFTNALPVAMLGMNAHSMCEYIEFVADRLLIELGYEKYFK-TLNPFEFMN 284

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
             I L+ + NFFE RV EY++     
Sbjct: 285 -NISLEGKTNFFEKRVGEYKRFGAAN 309


>gi|317060491|ref|ZP_07924976.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. D12]
 gi|313686167|gb|EFS23002.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
           sp. D12]
          Length = 344

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/356 (24%), Positives = 160/356 (44%), Gaps = 24/356 (6%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
               +   E   ++ +++++    +++  L  +K+ WA + Y +   N W+P +V +  D
Sbjct: 2   DRKRLFNPEGNDSLLERKIIKGNSTNLFNLNNVKFSWATQLYRTMMANFWIPEKVDLTQD 61

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              ++    LT  ER      L F    +S+  NN+   I  +++ PE    L  Q F+E
Sbjct: 62  KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNLP-NISDYITAPEVNLLLSIQTFQE 117

Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
           A+HS ++QYII S+   E    +++ +R+   +  +  +  Q  Q           ++  
Sbjct: 118 AIHSQSYQYIIESILPKESRDLIYDKWRDDKVLFERNRFIAQIYQDFI--------EETS 169

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            +    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+     +I
Sbjct: 170 DQNFAKVLIANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKII 229

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +IK           +++ R M   A   EI +    +    +G+   + E Y +++AN 
Sbjct: 230 REIKA---ENHNFFEEEEIRAMFRTAVEQEILWTEHIIGNRILGITTETTEAYTKWLANE 286

Query: 303 RCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           R   IGL P+++  T+NP+  +    D +     + NFFE  VT Y   + +  WD
Sbjct: 287 RLRTIGLAPMYEEFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342


>gi|269865122|ref|XP_002651812.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063829|gb|EED42244.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 336

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 130/304 (42%), Gaps = 29/304 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +L  D
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LFN    +PSI  KA WA ++  + +S                   V +   EG
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFD--------------TRCVAFACVEG 188

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   I  +          
Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNK---------C 239

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
                ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G   ++ +  +
Sbjct: 240 TVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGERKIYTFLTH 299

Query: 319 PFPW 322
              W
Sbjct: 300 SISW 303


>gi|261419130|ref|YP_003252812.1| ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61]
 gi|319765947|ref|YP_004131448.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
 gi|261375587|gb|ACX78330.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61]
 gi|317110813|gb|ADU93305.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
          Length = 346

 Score =  193 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 90/328 (27%), Positives = 160/328 (48%), Gaps = 19/328 (5%)

Query: 24  MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N R S+V     + Y WA+ KY     N W P E+ M  D+  +     LTD E+   
Sbjct: 22  IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF---PQLTDREQDAF 78

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + +G  A  +S+  +     +  ++++P     ++  A +E +H+H++ Y+++SL    
Sbjct: 79  LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F+ +R  P++  + ++            +    ++ + E L    VF V+ EG++
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEEPNVEHLLRSIVFDVILEGLF 189

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E P   T E    
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELSDF 249

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R    +A  LEI +A E +     G++    E Y++F AN R HQ+G +  F  Y  NP
Sbjct: 250 VRETFTKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309

Query: 320 FPWM--SEVIDLKKEKNFFETRVTEYQQ 345
             W+   E +DL  + +FFE +  +Y +
Sbjct: 310 LRWIKAYEEVDL-GKSDFFEQKPRQYTK 336


>gi|284929768|ref|YP_003422290.1| ribonucleotide reductase, subunit beta [cyanobacterium UCYN-A]
 gi|284810212|gb|ADB95909.1| ribonucleotide reductase, beta subunit [cyanobacterium UCYN-A]
          Length = 354

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 86/365 (23%), Positives = 164/365 (44%), Gaps = 30/365 (8%)

Query: 1   MANNTGLS--PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPT 57
           +   T +S  PI   +    ++++ +    + ++ QL  ++Y WA   Y     N W+P 
Sbjct: 5   IDKRTVMSTNPIFNPDGDDAIENRAIWFGNTTNLMQLNDVRYSWAVGLYQQMRENFWIPQ 64

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           ++ +  D+  +   + LT+DER      L +    +S+   NI   +   ++ PE    +
Sbjct: 65  KLDITQDVTDY---SNLTEDERYAYDGILSYLTFLDSIQTCNIP-HLKNSITAPEVSLCM 120

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFT 175
             Q  +E +H+ ++QYII ++   +   +++  +RE   + ++  +  +  Q        
Sbjct: 121 AEQISQEGMHNQSYQYIIETIVPPDRRNQVYEFWREDKVLRSRCEFIAKIYQKYID---- 176

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
               D   E      +   + EG++FY GF    +L     M G A+ ++ I RDE  H+
Sbjct: 177 ----DPTAENYFTALMADFLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHV 232

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
                +I + +   PH       ++   M   A   E  + +  +    +G+   S EQY
Sbjct: 233 RLYQKLIPEARKVFPH-----STEQIYEMFDTAVNHECRWTNHIVGSNILGITESSTEQY 287

Query: 296 MQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAE 348
            +++AN R   IGLEPL+   ++T++P+  +    D KK    + NFFE+ VT Y   + 
Sbjct: 288 TKYLANIRLRSIGLEPLYTGEEFTKSPYSHLERFSDTKKDGHTKANFFESTVTSYVMSSG 347

Query: 349 LK-WD 352
           +  WD
Sbjct: 348 VSGWD 352


>gi|307151334|ref|YP_003886718.1| ribonucleotide reductase [Cyanothece sp. PCC 7822]
 gi|306981562|gb|ADN13443.1| ribonucleotide reductase [Cyanothece sp. PCC 7822]
          Length = 355

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 84/363 (23%), Positives = 156/363 (42%), Gaps = 28/363 (7%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           ++    ++PI        ++++ M     +++ QL  ++Y WA   Y     N W+P  +
Sbjct: 8   LSERMPITPIFNPNGDDRIENRTMWFGNITNLMQLNDVRYTWAVGLYKQMRENFWIPERL 67

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D+  +     LT+DER   +  L +    +S+   NI   +   ++ PE    +  
Sbjct: 68  DITQDVTDY---WNLTEDERYAFEGILSYLTFLDSVQTCNIP-HLKASVTAPEISLCMAE 123

Query: 120 QAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           Q  +E +H+  +QY+I ++       E+++ +R    + A+  +     Q   +      
Sbjct: 124 QISQEGMHNQAYQYMIETIIPLERRSEVYDFWRTDKVLKARCEFIAGLYQKYINQ----- 178

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
               + +      +   + EG++FY GF    +L     M G A+ ++ I RDE  H+  
Sbjct: 179 ---PNIDNYFTALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRL 235

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +I +     PH        K   M   A   E  + +  +    +G+   S EQY +
Sbjct: 236 YQKIIAEAMQTFPH-----SVDKVYEMFDTAVHHECRWTNHIVGDNILGITESSTEQYTK 290

Query: 298 FIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
           ++AN R   IGL+PL+   KY ++P+  +    D KK    + NFFE  VT Y   + + 
Sbjct: 291 YLANIRLKAIGLKPLYADEKYQKSPYSHLERFSDTKKDAHTKANFFEATVTSYVMSSGVT 350

Query: 351 -WD 352
            WD
Sbjct: 351 GWD 353


>gi|218249013|ref|YP_002374384.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801]
 gi|218169491|gb|ACK68228.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801]
          Length = 344

 Score =  192 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 83/357 (23%), Positives = 152/357 (42%), Gaps = 28/357 (7%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           ++PI        ++++ +    + ++ QL  ++Y WA   Y     N W+P  + +  D+
Sbjct: 3   INPIFNPSGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDV 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     LTDDER      L +    +S+   NI   +   ++ PE    +  Q  +E 
Sbjct: 63  TDY---ANLTDDERYAYDGILSYLTFLDSVQTCNIP-HLKSSVTAPEVSLCMAEQISQEG 118

Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +H+ ++QYII ++   E   ++++ +R    +  +  +     Q                
Sbjct: 119 MHNQSYQYIIETIIPPERRTQVYDFWRTDKVLKERCEFIASLYQKYIDI--------PTS 170

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E      +   + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I 
Sbjct: 171 ENYFVALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 230

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           + +   PH        +   M   A   E  + +  +    +G+   S EQY +++AN R
Sbjct: 231 EARKVFPH-----SVDQIYDMFDRAVKYECQWTNHIVGNNILGITEASTEQYTKYLANIR 285

Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
              IGL+PL+    Y ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 286 LRSIGLDPLYPDIKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGITGWD 342


>gi|297530897|ref|YP_003672172.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
 gi|297254149|gb|ADI27595.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
          Length = 346

 Score =  192 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 90/328 (27%), Positives = 160/328 (48%), Gaps = 19/328 (5%)

Query: 24  MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N R S+V     + Y WA+ KY     N W P E+ M  D+  +     LTD E+   
Sbjct: 22  IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF---PQLTDREQDAF 78

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + +G  A  +S+  +     +  ++++P     ++  A +E +H+H++ Y+++SL    
Sbjct: 79  LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F+ +R  P++  + ++            +    ++ + E L    VF V+ EG++
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEEPNVENLLRSIVFDVILEGLF 189

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E P   T E    
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELSDF 249

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R    +A  LEI +A E +     G++    E Y++F AN R HQ+G +  F  Y  NP
Sbjct: 250 VRETFTKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309

Query: 320 FPWM--SEVIDLKKEKNFFETRVTEYQQ 345
             W+   E +DL  + +FFE +  +Y +
Sbjct: 310 LRWIKAYEEVDL-GKSDFFEQKPRQYTK 336


>gi|257062099|ref|YP_003139987.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802]
 gi|256592265|gb|ACV03152.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802]
          Length = 355

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 83/357 (23%), Positives = 152/357 (42%), Gaps = 28/357 (7%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           ++PI        ++++ +    + ++ QL  ++Y WA   Y     N W+P  + +  D+
Sbjct: 14  INPIFNPSGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDV 73

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     LTDDER      L +    +S+   NI   +   ++ PE    +  Q  +E 
Sbjct: 74  TDY---ANLTDDERYAYDGILSYLTFLDSVQTCNIP-HLKSSVTAPEVSLCMAEQISQEG 129

Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +H+ ++QYII ++   E   ++++ +R    +  +  +     Q                
Sbjct: 130 MHNQSYQYIIETIIPPERRTQVYDFWRTDKVLKERCEFIASLYQKYID--------HPTS 181

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E      +   + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I 
Sbjct: 182 ENYFVALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 241

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           + +   PH        +   M   A   E  + +  +    +G+   S EQY +++AN R
Sbjct: 242 EARKVFPH-----SVDQIYDMFDRAVKYECQWTNHIVGNNILGITEASTEQYTKYLANIR 296

Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
              IGL+PL+    Y ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 297 LRSIGLDPLYPDIKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGITGWD 353


>gi|172036555|ref|YP_001803056.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp.
           ATCC 51142]
 gi|171698009|gb|ACB50990.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp.
           ATCC 51142]
          Length = 352

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 157/357 (43%), Gaps = 28/357 (7%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           ++PI   E    ++++ +    + ++ QL  ++Y WA   Y     N W+P  + +  D+
Sbjct: 11  INPIFNPEGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDVTQDV 70

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     LTDDER      L +    +S+   NI   +   ++ PE    +  Q  +E 
Sbjct: 71  TDY---ANLTDDERYAYDGILSYLTFLDSVQTCNIP-HLKSSITAPEISLCMAEQISQEG 126

Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +H+ ++QY+I ++   +   ++++ +R    +  +  +  +  Q            DA  
Sbjct: 127 MHNQSYQYLIETIIPPDRRTQVYDFWRTDKVLKDRCEFIAKLYQKYID--------DATP 178

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E      +   + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I 
Sbjct: 179 ENYFIALMADFLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 238

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           + +   PH       ++   M   A   E  + +  +    +G+   S E+Y +++AN R
Sbjct: 239 EARKVFPH-----SVEQIYEMFDMAVNYECRWTNHIVGNNILGITESSTEKYTKYLANIR 293

Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
              IGLEPL+    Y ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 294 LRSIGLEPLYPEPKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGVTGWD 350


>gi|15613065|ref|NP_241368.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus
           halodurans C-125]
 gi|14195134|sp|Q9KFH7|RIR2_BACHD RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|10173115|dbj|BAB04221.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus
           halodurans C-125]
          Length = 345

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 81/332 (24%), Positives = 157/332 (47%), Gaps = 17/332 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           +LN +S +V     +++ WA+  Y +   N W P E+ M  D   + +   LT+ E+   
Sbjct: 21  ILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPT---LTETEQEAF 77

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
           K+ +G  A  +S+  +   +    +L++      +   +F+E VH+ ++ Y+++SL    
Sbjct: 78  KKIIGLLAFLDSVQTD-YSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKA 136

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F  ++    +  +  + +   +            +   +   +  V+ V+ EG+ 
Sbjct: 137 TQDEIFEYWKHDDVLKERNEFIIDGYEKFVD--------NPTPKTFLESIVYDVILEGLN 188

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE LH+    ++  ++ +E P L T+E +  
Sbjct: 189 FYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTF 248

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319
            +T L +A  LE  +    +     G+N    E Y+ FIAN+R  Q+G+E  +   + NP
Sbjct: 249 VKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGMEKPYPEIKHNP 308

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELK 350
             W+    D+   + +FFE +  +Y + +   
Sbjct: 309 MKWIRAYEDVNSGKSDFFEQKSRQYAKVSADN 340


>gi|56419447|ref|YP_146765.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus
           kaustophilus HTA426]
 gi|56379289|dbj|BAD75197.1| ribonucleoside-diphosphate reductase beta subunit [Geobacillus
           kaustophilus HTA426]
          Length = 346

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 90/328 (27%), Positives = 160/328 (48%), Gaps = 19/328 (5%)

Query: 24  MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N R S+V     + Y WA+ KY     N W P E+ M  D+  +     LTD E+   
Sbjct: 22  IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDVKQF---PQLTDREQDAF 78

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + +G  A  +S+  +     +  ++++P     ++  A +E +H+H++ Y+++SL    
Sbjct: 79  LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F+ +R  P++  + ++            +    ++ + E L    VF V+ EG++
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEEPNVENLLRSIVFDVILEGLF 189

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E P   T E    
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELADF 249

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R    +A  LEI +A E +     G++    E Y++F AN R HQ+G +  F  Y  NP
Sbjct: 250 VRNTFMKAAELEIEWAREIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309

Query: 320 FPWM--SEVIDLKKEKNFFETRVTEYQQ 345
             W+   E +DL  + +FFE +  +Y +
Sbjct: 310 LRWIKAYEEVDL-GKSDFFEQKPRQYTK 336


>gi|126654703|ref|ZP_01726237.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110]
 gi|126623438|gb|EAZ94142.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110]
          Length = 352

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 83/358 (23%), Positives = 154/358 (43%), Gaps = 28/358 (7%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            ++PI        ++++ +    + ++ QL  ++Y WA   Y     N W+P  + +  D
Sbjct: 10  SINPIFNPGGDDAIENRSIWFGNTTNLMQLNDVRYAWAVGLYQQMRENFWIPQRLDVTQD 69

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  +     LTDDER      L +    +S+   NI   +   ++ PE    +  Q  +E
Sbjct: 70  VTDY---ANLTDDERYAYDGILSYLTFLDSVQTCNIP-HLKSSITAPEISLCMAEQISQE 125

Query: 125 AVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
            +H+ ++QY+I ++   E   +++  +R    +  +  +  +  Q            D  
Sbjct: 126 GMHNQSYQYLIETIIPPERRTQVYEFWRTDTVLKDRCEFIAKLYQKYID--------DPT 177

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            E      +   + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I
Sbjct: 178 SENYFIALMADFLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLI 237

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            + +   PH       ++   M   A   E  + +  +    +G+   S E+Y +++AN 
Sbjct: 238 PEARKVFPH-----SVEQIYEMFDMAVNYECRWTNHIVGNNILGITESSTEKYTKYLANI 292

Query: 303 RCHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           R   IGLEPL+    Y ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 293 RLRSIGLEPLYPEPKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGVTGWD 350


>gi|47213103|emb|CAF89523.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 407

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 129/299 (43%), Gaps = 43/299 (14%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
           W+  +V +  DL  W+S   L DDER  I   L FFA+S+ +V  N+V    + +   E 
Sbjct: 135 WL--QVDLSKDLQHWES---LKDDERFFISHVLAFFAASDGIVNENLVERFTQEVQVTEA 189

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLS 170
           R +   Q   E +HS  +  +I +   +  E   LFN    +P +  KA+WAL +     
Sbjct: 190 RCFYGFQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIETLPCVKKKADWALNWIGNQK 249

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
           +                +  V +   EG++F   FA I  L +   M G+    + I RD
Sbjct: 250 AS-------------YGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRD 296

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E LH +F   +   +         K   Q    ++  A  +E  +  E +P   +G+N  
Sbjct: 297 EGLHCDFACLMFKHLL-------HKPSAQTVGAIIRNAVEIEQEFLTEALPVKLIGMNCQ 349

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
             ++Y++FI                 ENPF +M E I L+ + NFFE RV EYQ+   +
Sbjct: 350 LMKRYIEFIY--------------RAENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVM 393


>gi|218442220|ref|YP_002380549.1| ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424]
 gi|218174948|gb|ACK73681.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424]
          Length = 355

 Score =  189 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 157/356 (44%), Gaps = 28/356 (7%)

Query: 8   SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +PI   +    ++++ M     +++ QL  ++Y WA   Y     N W+P  + +  D+ 
Sbjct: 15  TPIFNPDGDDRIENRTMWFGNITNLMQLNDVRYNWAVGLYKQMRENFWIPERLDITQDVT 74

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     LTD+ER      L +    +S+   NI   +   ++ PE    +  Q  +E +
Sbjct: 75  DY---WNLTDEERYAFDGILSYLTFLDSIQTCNIP-HLKSSVTAPEISLCMAEQISQEGM 130

Query: 127 HSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+  +QY+I ++       ++++ +R    + A+  +     Q          T   +  
Sbjct: 131 HNQAYQYMIETIIPLEKRNQVYDFWRTDKVLKARCEFIAGLYQKYID------TPSIENY 184

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
           F+  +  +  + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I +
Sbjct: 185 FVALMADY--LLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQRIIVE 242

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                PH       ++   M   A   E  + +  +    +G+   S EQY +++AN R 
Sbjct: 243 AMETFPH-----SVEQIYEMFDTAVQHECRWTNHIVGDNILGITESSTEQYTKYLANHRL 297

Query: 305 HQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           + IGL+PL++   Y ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 298 NTIGLKPLYEDEKYKKSPYSHLERFSDTKKDAHTKANFFEATVTSYVMSSGVTGWD 353


>gi|138894466|ref|YP_001124919.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247935|ref|ZP_03146637.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16]
 gi|134265979|gb|ABO66174.1| Ribonucleoside-diphosphate reductase beta subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212719|gb|EDY07476.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16]
          Length = 344

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 90/328 (27%), Positives = 160/328 (48%), Gaps = 19/328 (5%)

Query: 24  MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           M+N R S+V     + Y WA+ KY     N W P E+ M  D+  +     LT  E+   
Sbjct: 20  MINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDVKQF---PQLTAREQDAF 76

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + +G  A  +S+  +     +  ++++P     ++  A +E +H+H++ Y+++SL    
Sbjct: 77  LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 135

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F+ +R  P++  + ++            +    +  + E L    VF V+ EG++
Sbjct: 136 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEKPNVENLLRSIVFDVILEGLF 187

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E P   T E    
Sbjct: 188 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELADF 247

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
           +R+   +A  LEI +A E +     G++    E Y++F AN R HQ+G +  F  Y  NP
Sbjct: 248 ARSTFMKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 307

Query: 320 FPWM--SEVIDLKKEKNFFETRVTEYQQ 345
             W+   E +DL  + +FFE +  +Y +
Sbjct: 308 LRWIKAYEEVDL-GKSDFFEQKPRQYTK 334


>gi|332708567|ref|ZP_08428541.1| ribonucleotide reductase, beta subunit [Lyngbya majuscula 3L]
 gi|332352664|gb|EGJ32230.1| ribonucleotide reductase, beta subunit [Lyngbya majuscula 3L]
          Length = 344

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 81/357 (22%), Positives = 150/357 (42%), Gaps = 28/357 (7%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           ++PI   +     + + +    + ++ QL  ++Y WA   Y     N W+P ++ +  D+
Sbjct: 3   INPIFNPDGDDKTEHRSIWFGNTTNLMQLNDVRYAWAIGLYQQMRENFWIPQKLDLTQDV 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +   + LT  ER      L +    +S+   NI   I   ++ PE    +  Q  +E 
Sbjct: 63  TDY---SNLTPAERYAYDGILSYLTFLDSVQTCNIP-HIKSSITAPEVSLCMAEQISQEG 118

Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +H+ ++QYII ++   E   +++  +R    +  +  +   + Q            +   
Sbjct: 119 MHNQSYQYIIETVIPTEHRSKVYEFWRTDKVLRDRCEFVASFYQKYVD--------NPTP 170

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E      +   + EGM+FY GF    +L     M G A+ ++ I RDE  H+     +I 
Sbjct: 171 ENYFVSLLADFLLEGMYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 230

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
                 P+       ++   M   A   E  + +  +    +G+   S E Y +++AN R
Sbjct: 231 MAMDVFPYSS-----EQIYEMFATAVEHECRWTNHIVGNDILGITERSTEHYTKYLANIR 285

Query: 304 CHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
              IGL+PL+    Y ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 286 LRSIGLDPLYKGENYQKSPYSHLERFSDTKKDAHTKANFFEASVTSYVMSSGVSGWD 342


>gi|307171465|gb|EFN63309.1| Ribonucleoside-diphosphate reductase subunit M2 [Camponotus
           floridanus]
          Length = 343

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 128/316 (40%), Gaps = 42/316 (13%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           ++    +  +Q  E+  N + + +L    +   + P++Y   W+ Y  A  + W   EVP
Sbjct: 42  LSKTKAVQKVQLKEE-FNPELEPLLQEGPNRFVIFPIQYPDIWDMYKKAVASFWTIEEVP 100

Query: 61  MQD-DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
           +   D   W+    L  DER  I   L FFA+S+ +V  N++    + +   E R +   
Sbjct: 101 LHKLDKKDWEE--KLNSDERYFISHVLAFFAASDGIVNENLIERFSQEVKIAEARCFYGF 158

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
           Q   E +HS  +  +I +   D  E   LFN    +PS+  KANWAL +           
Sbjct: 159 QIAIENIHSEMYSLLIETYISDPKEKDFLFNAIETLPSVGKKANWALNWINH-------- 210

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                               E   F      I  L +   M G+    + I RDE LH +
Sbjct: 211 --------------------ESATFPERVVAIFWLKKRGVMPGLTFSNELISRDEGLHCD 250

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
           F   +   I  +          ++ ++++ +A  +E  +  + +P   +G+N      Y+
Sbjct: 251 FACLMFKHIVQKPSF-------ERVKSIIMDAVEIEQEFLTQALPVQLIGMNCTLMCSYI 303

Query: 297 QFIANRRCHQIGLEPL 312
           +F+A+R    +G E +
Sbjct: 304 EFVADRLFVALGFEKV 319


>gi|115525181|ref|YP_782092.1| ribonucleotide reductase [Rhodopseudomonas palustris BisA53]
 gi|115519128|gb|ABJ07112.1| ribonucleotide reductase [Rhodopseudomonas palustris BisA53]
          Length = 223

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 137/189 (72%), Positives = 153/189 (80%)

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           ++TQ L  P+F TGT +AD+ FL+DL  FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQ
Sbjct: 35  KHTQHLDDPTFVTGTVEADRAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQ 94

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
           YQYI+RDES+HLNFGID+INQIKIENP LWT  FQ++ R ML EA  LE AY  +TMP+G
Sbjct: 95  YQYILRDESIHLNFGIDIINQIKIENPELWTAGFQEELRGMLREAAELEAAYCRDTMPRG 154

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           F GLNA  CEQYM FI NRRC Q+GL P+F   ENPFPWMSE +DLKKEKNFFETRV EY
Sbjct: 155 FFGLNAALCEQYMHFITNRRCAQLGLAPIFAEVENPFPWMSETMDLKKEKNFFETRVIEY 214

Query: 344 QQGAELKWD 352
           Q G  L WD
Sbjct: 215 QNGGALTWD 223


>gi|295401051|ref|ZP_06811025.1| Ribonucleoside-diphosphate reductase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112173|ref|YP_003990489.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1]
 gi|294976844|gb|EFG52448.1| Ribonucleoside-diphosphate reductase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217274|gb|ADP75878.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1]
          Length = 346

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 158/329 (48%), Gaps = 19/329 (5%)

Query: 23  RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           R++N +S +V     + Y WA+ KY     N W P E+ M  D+  +     LT+ E+  
Sbjct: 21  RIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF---PLLTEREQDA 77

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
             + +G  A  +S+  +     +  ++++      ++  A +E +H+H++ Y+++SL   
Sbjct: 78  FLKIIGLLALLDSIQTD-YAGRVADYITDSSINALMIMLAQQEVIHNHSYSYVLSSLVTK 136

Query: 142 --EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
             + E+F  +R  P +  + ++            +    ++ + E L    V+ V+ EG+
Sbjct: 137 SKQDEVFEFWRNEPILRKRNDFVTN--------GYKAFAENPNVENLLKSIVYDVILEGL 188

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           +FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E P   T E  +
Sbjct: 189 FFYSGFAFFYNLARNQKMVATSTMINYINRDEHIHVDLFAKIFKEVLSEYPEYNTPELAE 248

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTEN 318
             +    +A  LEI +A+  +     G++      Y++F AN R HQ+G E  F  Y  N
Sbjct: 249 FVQATFTKAAELEIEWANYIIGNDIDGIDMHDLSAYIKFYANVRAHQLGFERPFAGYRTN 308

Query: 319 PFPWM--SEVIDLKKEKNFFETRVTEYQQ 345
           P  W+   E +DL  + +FFE +  +Y +
Sbjct: 309 PLRWIKAYEEVDL-GKSDFFEQKSRQYTK 336


>gi|291239432|ref|XP_002739627.1| PREDICTED: hCG23833-like [Saccoglossus kowalevskii]
          Length = 309

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 82/320 (25%), Positives = 139/320 (43%), Gaps = 30/320 (9%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPM-QDDLALWKSKNGLTDDERLMIKRNLGFF 89
                P+K    ++ +       W   E+ +   DL  W     LT DER   K  LGFF
Sbjct: 3   RYVTPPIKNLDLYDMWKKHVRCFWTKDEINITSSDLREWND---LTPDERQFFKCILGFF 59

Query: 90  ASSESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
           AS+  +V++N+ L      +   E R +   Q   E +HS T+  ++T+   +E E   +
Sbjct: 60  ASTNIIVSDNLALRFLADPNISREARCFYSFQIAMENIHSETYIELLTAYVPEEKERNEL 119

Query: 149 YREVPSITA---KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
              + S      K+ WA+++                +     +  V + V EG+ F + F
Sbjct: 120 LYSIISWPCLNVKSRWAVKWMN-------------DEFATYAERLVAFAVVEGIMFSSSF 166

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
           A I  + ++  + G+ +  ++I RDE LH  F   +  +IK   P           R ++
Sbjct: 167 AGIYWIKQSGLLAGLTQANEFISRDEGLHCTFACTMYGKIKPRLPDTK-------VRKIV 219

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
            E   +E  +    + K  +G+N+   E Y+ F+ +     +G E  F    NPFP+M  
Sbjct: 220 LEGCEVEKLFVKHALRKPLLGMNSHLMETYVNFVTDNLLTDLGYEKEFGVN-NPFPFMD- 277

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I ++ + NFFE RVTEY +
Sbjct: 278 NISMQGKTNFFERRVTEYTR 297


>gi|239826135|ref|YP_002948759.1| ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70]
 gi|239806428|gb|ACS23493.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70]
          Length = 346

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 86/329 (26%), Positives = 158/329 (48%), Gaps = 19/329 (5%)

Query: 23  RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           R++N +S +V     + Y WA+ KY     N W P E+ M  D+  +     LT+ E+  
Sbjct: 21  RIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF---PNLTEREQDA 77

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
             + +G  A  +S+  +     +  ++++      ++  A +E +H+H++ Y+++SL   
Sbjct: 78  FLKIIGLLALLDSIQTD-YAGRVADYITDSSINALMIMLAQQEVIHNHSYSYVLSSLVPK 136

Query: 142 --EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
             + E+F  +R  P +  + ++            +    ++ + E L    V+ V+ EG+
Sbjct: 137 SKQDEVFEFWRNEPILRKRNDFVTN--------GYKAFAENPNVENLLKSIVYDVILEGL 188

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
           +FY+GFA   +L R  KMV  +    YI RDE +H++    +  ++  E P   T E  Q
Sbjct: 189 FFYSGFAFFYNLARNQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYNTPELAQ 248

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTEN 318
             R    +A  LEI +A+  +     G++      Y++F AN R HQ+G +  F  Y  N
Sbjct: 249 FVRETFIKAAKLEIEWANYIIGNDIDGIDMHDLSAYIKFYANVRAHQLGFDRPFDGYRTN 308

Query: 319 PFPWM--SEVIDLKKEKNFFETRVTEYQQ 345
           P  W+   E +DL  + +FFE +  +Y +
Sbjct: 309 PLRWIKAYEEVDL-GKSDFFEQKSRQYTK 336


>gi|332971065|gb|EGK10035.1| ribonucleotide-diphosphate reductase beta subunit [Desmospora sp.
           8437]
          Length = 342

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 81/332 (24%), Positives = 157/332 (47%), Gaps = 17/332 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N RS +V      ++ WA+  Y +   N W P E+ M +D+  W     L ++E++  
Sbjct: 18  IINGRSSNVLNWDDCRFPWAYPLYKNMLANFWTPFEINMSEDIKQW---GRLAEEEQVAF 74

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
           K+ +G  A  +S+  +     +  +L++      +   +F+E VH+ ++ Y+++SL    
Sbjct: 75  KKIIGLLAFLDSIQTDYSS-KVADYLTDSSLAALMTVLSFQEVVHNQSYSYVLSSLVTRR 133

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++ E+F  ++    +  +  + ++  Q           +  +        V+ V+ EG+ 
Sbjct: 134 EQEEVFEYWKHDQVLRERNEFIVEGYQAF--------VEKPEPLTFLRSIVYDVILEGLN 185

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE LH+   + +  ++  E P L T+E +  
Sbjct: 186 FYSGFAFFYNLARHQKMVSTSTMINYINRDEQLHVRLFVQIYRELLEEIPELNTEENRNF 245

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
                  A  LEI +    +   F G+       Y++F+AN+R H++G E  F  Y +NP
Sbjct: 246 VTESFRRAAELEIRWGETVLGDRFDGIRPDELRAYIRFMANKRAHELGAERPFAGYRKNP 305

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELK 350
             W+    D+   +++FFE +  +Y + +   
Sbjct: 306 MRWVIAYQDVNRGKQDFFEGKSRQYSKVSSDN 337


>gi|159030376|emb|CAO91271.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 355

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 85/357 (23%), Positives = 157/357 (43%), Gaps = 28/357 (7%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           +SPI        ++++ +    + ++ QL  ++Y W+   Y     N W+P  + +  D+
Sbjct: 14  ISPIFNPSGDDAIENRSIWFGNTTNLMQLNDVRYTWSVGLYQQMRENFWIPQRLDITQDV 73

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     LTD+ER      L +    +S+   NI   +   ++ PE    +  Q  +EA
Sbjct: 74  TEY---GHLTDEERYAYDGILSYLTFLDSVQTCNIP-HLKGSVTAPEISLCMAEQISQEA 129

Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +H+ ++QY+I ++   +   E+++ +R    +  +  +     Q           +  + 
Sbjct: 130 MHNQSYQYLIETIIPSDRRGEVYDFWRTDKVLKDRCEFIASLYQQYID------KQTTES 183

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            F+  L  +  + E ++FY GF    +L     M G A+ ++ I RDE  H+     +I 
Sbjct: 184 YFIALLADY--LLESLYFYNGFIFFYNLASRQLMSGSADVFKMINRDELSHVRLYQKLIP 241

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           +     PH       ++   M   A   E  + +  +    +G+   S EQY +++AN R
Sbjct: 242 EAMAIFPH-----SVEQIYEMFDSAVKHECCWTNHIVGNDILGITEYSTEQYTKYLANIR 296

Query: 304 CHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
              IGLEPL+   KY ++P+  +    D KK    + NFFE  VT Y   + L  WD
Sbjct: 297 LKAIGLEPLYREEKYNKSPYNHLERFSDTKKEGHTKANFFEATVTSYVMSSGLTGWD 353


>gi|323487827|ref|ZP_08093085.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus
           donghaensis MPA1U2]
 gi|323398561|gb|EGA91349.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus
           donghaensis MPA1U2]
          Length = 348

 Score =  186 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 86/334 (25%), Positives = 156/334 (46%), Gaps = 21/334 (6%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           +LN +S  +     + Y   ++ Y +   N W   E+ MQDD+  W   + L+  E+ + 
Sbjct: 24  VLNGQSSGLLNWNDIAYPQMYDLYQALLANFWKAQEINMQDDIKQW---DSLSSVEKDVF 80

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140
            R     AS +SL    +  A+  ++++   +      + +EAVH+ ++ YI++SL    
Sbjct: 81  LRINTQLASLDSLQTPTMSQAM-DYVTDSSFKAIFAVISQQEAVHTESYSYILSSLVSVS 139

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++ E FN  +  P +  +          L   ++    ++   + L  L V  +  EG++
Sbjct: 140 EQNERFNQAKSDPVVQKR--------NELILDAYEEFRQNPTPQNLFKLSVNSINLEGIY 191

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY GFA    L R  KM+  +    YI RDE  H  F    I  +  ENP L T E  Q 
Sbjct: 192 FYAGFAFFYHLARQQKMLKTSTMISYIQRDEMQHAYFIAQFIRIMLTENPELHTDENIQY 251

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
             T + +A  LE  +A   +     GL+     +Y++++AN+R  Q+GL+ L++   NP 
Sbjct: 252 IYTTIDKAVQLEKEWAQYIL-ADIEGLDLVEFGEYVEYLANKRLRQLGLDNLYEERSNPM 310

Query: 321 PWM----SEVIDLKKEKNFFETRVTEYQQGAELK 350
           PW+     ++++   + +FFE +   Y + ++  
Sbjct: 311 PWIQVFGDDMMN-DTKSDFFEQKSRTYTKVSQTN 343


>gi|288554979|ref|YP_003426914.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           pseudofirmus OF4]
 gi|288546139|gb|ADC50022.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus
           pseudofirmus OF4]
          Length = 344

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 161/345 (46%), Gaps = 17/345 (4%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           +       N     +    S+V     +++ WA+  Y +   N W P E+ M  D   ++
Sbjct: 8   LYNPHAP-NASTGIINGESSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDTKQFQ 66

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               LT+ E+   K+ +G  A  +S+  +   L +  +L++      +   +F+E VH+ 
Sbjct: 67  ---NLTETEQEAFKKIIGLLAFLDSVQTD-YSLKVADYLTDSSLVALMSVLSFQEVVHNQ 122

Query: 130 TFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           ++ Y+++SL     + E+F+ ++  P +  +  + +   +  ++        +   + L 
Sbjct: 123 SYSYVLSSLVPKATQDEIFDYWKNDPVLKERNEFIVDGYEEFAN--------NPTPDTLA 174

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
              V+ V+ EG+ FY+GFA   +L R  KMV  +    YI RDE LH+    +V  ++  
Sbjct: 175 RSIVYDVILEGVNFYSGFAFFYNLARHQKMVSTSTMINYINRDEQLHVYLFTNVFKELLE 234

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           E+P L  +E +   +  L  A  LE+ + +  + +   G+ +     Y++FIAN+R  Q+
Sbjct: 235 EHPELNNREMESFVKQSLTTAVELELKWYNYIIGEQIEGVTSDEMGSYLKFIANKRAKQL 294

Query: 308 GLEPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELK 350
           G + +F  +  N F W+    D+   + +FFE +  +Y + +   
Sbjct: 295 GYDHIFPEHRTNVFKWIKAYEDVNAAKSDFFEQKSRQYAKVSSDN 339


>gi|16332312|ref|NP_443040.1| hypothetical protein slr0591 [Synechocystis sp. PCC 6803]
 gi|1653942|dbj|BAA18852.1| slr0591 [Synechocystis sp. PCC 6803]
          Length = 355

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 79/357 (22%), Positives = 150/357 (42%), Gaps = 28/357 (7%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           ++PI       +V+++ +    + ++ QL  ++Y WA   Y     N W+P  + +  D+
Sbjct: 14  VTPIFNPTGNDSVENRTIWFGNTTNLMQLNDVRYNWAVGLYQQMRENFWIPQRLDITQDV 73

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     LT++ER      L +    +S+   NI   +   ++ PE    +  Q  +E 
Sbjct: 74  TDY---WNLTNEERYAFDGILSYLTFLDSVQTCNIP-HLKSSVTAPEISLCMAEQISQEG 129

Query: 126 VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +H+ ++QY+I ++   E   +++  +R    +  +  +     Q               Q
Sbjct: 130 MHNQSYQYMIETIIPTEKRDKVYEFWRTDRVLKERCEYIAMLYQKYVD--------HPTQ 181

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E      +   + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I 
Sbjct: 182 ENYFIALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 241

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           +               +   M  +A   E  + +  +    +G+   S EQY +++AN R
Sbjct: 242 EAMQ-----VFTHSTDQIYEMFDKAVEFECRWTNHIVGNNILGITESSTEQYTKYLANSR 296

Query: 304 CHQIGLEPLFKYT---ENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
              IGL+PL+      ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 297 LRAIGLDPLYTDARYGKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGVSGWD 353


>gi|170077010|ref|YP_001733648.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus
           sp. PCC 7002]
 gi|169884679|gb|ACA98392.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus
           sp. PCC 7002]
          Length = 352

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/355 (22%), Positives = 148/355 (41%), Gaps = 28/355 (7%)

Query: 9   PIQAGEKRVNVDDKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           PI   +   ++  + +     +++ QL  ++Y WA   Y     N W+P ++ +  D+  
Sbjct: 13  PIFNPDGNDDIAHRSIWFGETTNLMQLNDVRYPWAVGLYQQMRENFWIPQKLDITQDVTD 72

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +     LTD ER      L +    +S+   N+   I   ++ PE    +  Q  +E +H
Sbjct: 73  YH---NLTDSERRAFDGILSYLTFLDSVQTCNLP-HIKSSITAPEISLCIAEQISQEGMH 128

Query: 128 SHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           + ++QY+I ++   +    +++ +R    +  +  +     Q            +   E 
Sbjct: 129 NQSYQYMIETIIPSDRRSAVYDFWRTDKVLRDRCEYIASNYQRYID--------NPTPEN 180

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
                V   + EG++FY GF    +L     M G A+ ++ I RDE  H+     +I + 
Sbjct: 181 YFTTLVADYLLEGLYFYNGFVFFYNLASRMLMPGSADIFKMINRDELSHVRLFQKLIPEA 240

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
                H     ++     M+  A   E  + +  +    +G+   S E Y +++AN R  
Sbjct: 241 MATFDHSVDHIYE-----MVERAVQYECQWTNHIVGNDILGITEQSTEIYTKYLANIRLQ 295

Query: 306 QIGLEPLFK---YTENPFPWMSEVID----LKKEKNFFETRVTEYQQGAELK-WD 352
            IGLEPL+K   Y ++P+  +    D       + NFFE  VT Y   + +  WD
Sbjct: 296 AIGLEPLYKGDQYKKSPYRHLERFSDTKKEGNTKANFFEAGVTSYVMSSGITGWD 350


>gi|56418235|gb|AAV91049.1| ribonucleotide reductase beta subunit [Grouper iridovirus]
          Length = 384

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 135/324 (41%), Gaps = 20/324 (6%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P KY WA +  +     HW+ TEV ++DD+  WKS   LT  E+  I   L  F   
Sbjct: 73  CFKPFKYSWAEDVRVKHERIHWVETEVNLRDDVTDWKS-GALTQQEKEFISCVLRLFTQL 131

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E ++ +   
Sbjct: 132 DVEVGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YSAFVAY 190

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K +             F      +    L       V+ EG+  +  F  +L+  
Sbjct: 191 KEMTDKLD-------------FMKSMDVSTIPNLARSLFKAVLNEGVSLFAAFVMLLAFQ 237

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           +  +M G+ +  ++ +RDE++H+     +   +  E P L T++  +  +     A  LE
Sbjct: 238 KRGRMKGMGKVVEWSVRDENIHVEGVSRLFETLCAEYPWLMTEKLVRDCKKDAERAAELE 297

Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVID 328
            A+            GL   S + Y+ ++ N R   +GL  L     +ENP PW+  +I+
Sbjct: 298 FAFIDLAFSYCPALDGLTPSSVKNYVLYVINLRASHMGLPKLMASAPSENPLPWVKWLIE 357

Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
                NFFE  VTEY+ G     W
Sbjct: 358 GADLTNFFENHVTEYETGGLTGSW 381


>gi|228861279|ref|YP_002854302.1| ribonucleotide reductase small subunit [Soft-shelled turtle
           iridovirus]
 gi|45550045|gb|AAS67856.1| ribonucleotide reductase small subunit [Rana grylio virus 9506]
 gi|194307559|gb|ACF42289.1| ribonucleotide reductase small subunit [Soft-shelled turtle
           iridovirus]
          Length = 387

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/324 (22%), Positives = 134/324 (41%), Gaps = 20/324 (6%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 72  CFKPFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +                +    L    +  V+ EG+  +  F  +L+  
Sbjct: 190 GEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM G+ +  ++ +RDE++H+     +   +  E P + TK+  +  +        LE
Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDLIELFKEDAERVAELE 296

Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328
            A+      +     GL     + Y+ ++ N R   +GL  L +      P PW+  +ID
Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356

Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
                NFFE  VTEY+ G     W
Sbjct: 357 GADLTNFFENHVTEYETGGLTGSW 380


>gi|56692684|ref|YP_164142.1| ribonucleoside-diphosphate reductase beta subunit [Singapore
           grouper iridovirus]
 gi|42517396|gb|AAS18062.1| ribonucleoside-diphosphate reductase beta subunit [Singapore
           grouper iridovirus]
          Length = 384

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 135/324 (41%), Gaps = 20/324 (6%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P KY WA +  +     HW+ TEV ++DD+  WKS   L+  E+  I   L  F   
Sbjct: 73  CFKPFKYSWAEDIRVKHERIHWVETEVNLRDDVTDWKS-GALSQQEKEFISCVLRLFTQL 131

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E ++ +   
Sbjct: 132 DVEVGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YSAFVAY 190

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K +             F      +    L       V+ EG+  +  F  +L+  
Sbjct: 191 KEMTDKLD-------------FMKSMDVSTIPNLARSLFKAVLNEGVSLFAAFVMLLAFQ 237

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           +  +M G+ +  ++ +RDE++H+     +   +  E P L T++  +  +     A  LE
Sbjct: 238 KKGRMKGMGKVVEWSVRDENIHVEGVSRLFETLCAEYPWLMTEKLVRDCKKDAERAAELE 297

Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVID 328
            A+            GL   S + Y+ ++ N R   +GL  L     +ENP PW+  +I+
Sbjct: 298 FAFIDLAFSYCPALDGLTPSSVKNYVLYVINLRASHMGLPKLMASAPSENPLPWVKWLIE 357

Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
                NFFE  VTEY+ G     W
Sbjct: 358 GADLTNFFENHVTEYETGGLTGSW 381


>gi|49237365|ref|YP_031646.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Frog virus 3]
 gi|47060183|gb|AAT09727.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Frog virus 3]
          Length = 387

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/324 (22%), Positives = 134/324 (41%), Gaps = 20/324 (6%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 72  CFKPFRYNWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +                +    L    +  V+ EG+  +  F  +L+  
Sbjct: 190 GEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM G+ +  ++ +RDE++H+     +   +  E P + TK+  +  +        LE
Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDLIELFKEDAERVAELE 296

Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328
            A+      +     GL     + Y+ ++ N R   +GL  L +      P PW+  +ID
Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356

Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
                NFFE  VTEY+ G     W
Sbjct: 357 GADLTNFFENHVTEYETGGLTGSW 380


>gi|167462363|ref|ZP_02327452.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 343

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 166/332 (50%), Gaps = 16/332 (4%)

Query: 24  MLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N   S+V      ++ WA+  Y +   N W+P EVPM  D+  W +   L D ER   
Sbjct: 18  IINGQSSNVLNWDDCRFPWAYPMYRNMLRNFWIPDEVPMTADIKQWST--ELGDHERDTF 75

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
           K+ +G  A  +S+  +     +  +L++      +   +F+E VH+ ++ Y+++SL    
Sbjct: 76  KKVIGLLAFLDSVQTD-YSGKVADYLTDSSLSALMSVLSFQEVVHNQSYSYVLSSLVPKS 134

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++ E+F  ++    +  + ++     Q            D   +   +  V+ V+ EG++
Sbjct: 135 EQDEIFEYWKTDEVLRERNDFLAAGYQRFVD--------DPTPQTFMESVVYDVILEGLF 186

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   ++ R  KM+G     ++I RDE +H+     +  ++  ENP L  +E  + 
Sbjct: 187 FYSGFAFFYNMARNGKMLGTNTMIRFINRDEEIHVRLFTQIFRELIAENPELDNEETHEF 246

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            R    +A  LEIA++   +   F G+ +   ++Y++F+AN+R +++G+E  F+ +  N 
Sbjct: 247 VRQTFRKAAELEIAWSEYIIGDRFDGVTSRDLDKYVRFMANKRVNELGIERPFEGHRRNN 306

Query: 320 FPWMSEV-IDLKKEKNFFETRVTEYQQGAELK 350
             W+     +   + +FFE+RVT+Y + ++  
Sbjct: 307 LRWIKAYEENDAGKTDFFESRVTQYVKVSDDN 338


>gi|118197598|ref|YP_874310.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV]
 gi|113472593|gb|ABI35800.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV]
          Length = 341

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 144/334 (43%), Gaps = 21/334 (6%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              +LP++    W    +A +  W   E  +  D   W+    L   ER  +K  L FFA
Sbjct: 8   RKVILPIENQNLWRMDKTAMDCMWKVEEDDLSRDFDDWRH--KLCVQERFFLKHILAFFA 65

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
           S++++V  N++  +   +   E R +  +Q   E VHS  +  ++     +  E   L N
Sbjct: 66  SADTIVNINLIDYVRAAVPELEARYFYDQQILIENVHSEMYSLLVFEYIKNSEERNKLLN 125

Query: 148 MYREVPSITAKANWALQYTQTLSSPSF----------TTGTKDADQEFLQDLFVFYVVFE 197
            +  +  I  KA WAL++T++     +                +    L    + + + E
Sbjct: 126 AFDRIDCIKKKAQWALKWTESKWWQDYWVDPVLGCVQRRFRNKSYPSKLARRMIAFAIVE 185

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  +     M G+    + I RDE LH +F     N     N     K  
Sbjct: 186 GIFFSGSFAAIFFIKTKGLMPGLTFSNELISRDEGLHTDFACMYYNNYIPIN----EKLS 241

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            Q+  +M  EA  +E  +    +P   +G+NA    +Y++F+A+R   ++     F  T 
Sbjct: 242 PQQILSMFIEAVDIEKEFFTTALPCYLLGINATEMCKYIEFVADRLLVELRQPKHFN-TP 300

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           NPF +M+  I L+ + NFFE RV EY++    + 
Sbjct: 301 NPFNFMT-NISLEGKTNFFERRVGEYKRFGAGQD 333


>gi|225734460|gb|ACO25228.1| hypothetical protein [Epizootic haematopoietic necrosis virus]
          Length = 387

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 132/324 (40%), Gaps = 20/324 (6%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 72  CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 131 DVEVGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +                +    L    +  V+ EG+  +  F  +L+  
Sbjct: 190 EEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R  KM G+ +  ++ +RDE++H+     +   +  E P +  ++  +  +        LE
Sbjct: 237 RRGKMKGMGKVVEWSVRDENMHVEGVSKLFETLNSEYPWVVNEDLIELFKEDAERVAELE 296

Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328
            A+      +     GL     + Y+ ++ N R   +GL  L +      P PW+  +ID
Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRASNMGLPRLIERAPEACPIPWVKWLID 356

Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
                NFFE  VTEY+ G     W
Sbjct: 357 GADLTNFFENHVTEYETGGLTGSW 380


>gi|297582631|ref|YP_003698411.1| ribonucleoside-diphosphate reductase [Bacillus selenitireducens
           MLS10]
 gi|297141088|gb|ADH97845.1| Ribonucleoside-diphosphate reductase [Bacillus selenitireducens
           MLS10]
          Length = 347

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 81/345 (23%), Positives = 146/345 (42%), Gaps = 15/345 (4%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P+       N     +    S +     + Y   ++ Y +   N W   E+ MQDD+  W
Sbjct: 10  PLLNPTHP-NRSTGLIQGEASGILNWNDIAYPHMYDLYQTLLANFWKAQEINMQDDIKQW 68

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                LT  E+ +  R     AS +SL    +   +  ++++P  +      A +EAVH+
Sbjct: 69  AE---LTPAEQDVFLRINTQLASLDSLQTPTMSQ-VMDYVTDPSFKAIFAIVAQQEAVHN 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
            ++ Y+++SL   + +            AK +  +Q    +   ++    +    + L +
Sbjct: 125 ESYSYVLSSLVNQQEQTRRFQE------AKEDPLIQRRNDVILSAYERFRQHPSPQHLFE 178

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L V  +  EG++FY GFA    L R  KM+  +    YI RDE  H  F    +  +  +
Sbjct: 179 LAVQSLNLEGVYFYAGFAFFYHLARQQKMMKTSTMISYIQRDEMQHAYFMSQFVRILLTD 238

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           +P L T+E  Q     +  A  LE  +A   +     G++      Y++++ N+R  Q+G
Sbjct: 239 HPELNTRENVQYVYDAMASAAGLEQEWAAVIL-ADIDGIDLGEFNGYVEYLVNKRLRQLG 297

Query: 309 LEPLFKYTENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAELK 350
           L  LF   +NP PW    S+ +  + + +FFE +   Y +     
Sbjct: 298 LSNLFPERDNPMPWIHVFSDTMMNQTKSDFFEQKSRSYTKVTSDN 342


>gi|115691069|ref|XP_001203692.1| PREDICTED: similar to ribonuleotide reductase small subunit,
           partial [Strongylocentrotus purpuratus]
 gi|115735426|ref|XP_798682.2| PREDICTED: similar to ribonuleotide reductase small subunit,
           partial [Strongylocentrotus purpuratus]
          Length = 258

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 77/302 (25%), Positives = 129/302 (42%), Gaps = 50/302 (16%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           + W   EV + +D   W     L  +E+  +   L FFA+S+ +V  N+V    + +  P
Sbjct: 1   SFWTTEEVDLGEDWKDW---QKLKPEEKHFVTHVLAFFAASDGIVNENLVERFSQEVQIP 57

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168
           E + +   Q   E +HS  +  +I +   D  E   LFN  + +P +  KA+WAL++  +
Sbjct: 58  EAKCFYGFQIAMENIHSEMYSLLIDTYVKDPTEKHRLFNAIQTMPFVKKKADWALKWIAS 117

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
                        +  F + L  F  V EG++F   FA I    +   + G+    + I 
Sbjct: 118 ------------DESTFAERLVAFAAV-EGIFFSGSFAAIFWFKKRGLLPGLTFSNELIS 164

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           RDE LH +F   + + +    P    +E       ++ +A  LE  Y  E +P   +G+N
Sbjct: 165 RDEGLHCDFACLLFSHLNHPTPVSRIQE-------IIRDAVRLEEEYLSEALPVALIGMN 217

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           A    QY+QF+A+R   ++                        + NFFE RV EYQ+   
Sbjct: 218 ARLMCQYIQFVADRLLMEL------------------------KSNFFEKRVGEYQKMNV 253

Query: 349 LK 350
           + 
Sbjct: 254 MT 255


>gi|116326775|ref|YP_803312.1| hypothetical protein TNAV2c_gp089 [Trichoplusia ni ascovirus 2c]
 gi|102231783|gb|ABF70606.1| hypothetical protein [Trichoplusia ni ascovirus 2c]
          Length = 269

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 127/279 (45%), Gaps = 27/279 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y  A  + W   EV +  DL+ W   + L DDE+  IK  L FFA+S+ +V  N+V   
Sbjct: 1   MYKKAEASFWTVEEVDLSKDLSDW---DKLKDDEKHFIKHILAFFAASDGIVNENLVERF 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
            + +   E R +   Q   E VHS  +  +I +   D  E   LFN    +P I  KA+W
Sbjct: 58  SQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIRDSDERDYLFNAIETLPCIKKKADW 117

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           AL++  +             +     +  V +   EG++F   FA I  L +   + G+ 
Sbjct: 118 ALKWISS-------------NSANFAERIVAFAAVEGIFFSGSFASIFWLKKRGLLPGLT 164

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   + N +  + P+    E       +L EA ++E  +  + +P
Sbjct: 165 FSNELISRDEGLHTDFACLMYNYVVQKPPNSRVIE-------ILKEAVVIEKDFLTDALP 217

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              +G+N     QY++F+A+R  +++  E  +   +NP 
Sbjct: 218 VRLLGMNCDLMSQYIEFVADRLLYELIGEKYYN-AKNPI 255


>gi|149182583|ref|ZP_01861054.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           SG-1]
 gi|148849719|gb|EDL63898.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           SG-1]
          Length = 345

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/332 (24%), Positives = 160/332 (48%), Gaps = 17/332 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N +S ++     +++ WA+ KY     N W P E+ M  D+  +     LT+ E+   
Sbjct: 21  IINGKSSNILNWDDVRFSWAYPKYKRMLGNFWTPFEINMSKDIKQF---PNLTEQEQDTF 77

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
            + +G  A  +S+  +     +  +L++      ++  A +E VH+H++ Y+++S+    
Sbjct: 78  LKVIGLLALLDSIQTD-YAGKVADYLTDSSLNALMIILAQQEVVHNHSYSYVLSSIVSKN 136

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F+ +R  P++  + ++     Q  +        ++ + E L    V+ V+ EG++
Sbjct: 137 KQDEVFDYWRTEPTLRKRNDFITNGYQGFA--------ENPNIENLLHSIVYDVILEGLF 188

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE LH+     +  ++  ENP   T E +  
Sbjct: 189 FYSGFAFFYNLARNQKMVATSTMINYINRDEQLHVGLFEKIYKEVLHENPEYDTAELKVF 248

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
                  A  LEI +  + +     GL     E Y++F+AN+R  Q+G +  F+ Y  NP
Sbjct: 249 GTQAFKRAAELEIEWGEQIIGNKIDGLLMSDLEAYIKFMANKRAEQMGFQAPFEGYRTNP 308

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELK 350
             W+    ++   + +FFE +  +Y + ++  
Sbjct: 309 LRWIVAYQEVDLGKTDFFEQKSRQYTKTSDAN 340


>gi|61806080|ref|YP_214440.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2]
 gi|61374589|gb|AAX44586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2]
 gi|265525292|gb|ACY76089.1| NrdB [Prochlorococcus phage P-SSM2]
          Length = 384

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/357 (21%), Positives = 140/357 (39%), Gaps = 31/357 (8%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           MA   G++ +    + VN   + M   +   V +    KY              W P EV
Sbjct: 1   MAEVKGMT-VFN-TEEVNTKKQPMFFGKPLGVQRYDNFKYPSFENLTKQQLGYFWRPEEV 58

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +Q D   +++   L  +++ +   NL +    +S+      +A   + S PE    +  
Sbjct: 59  SLQKDRGDYQT---LRPEQKHIYTSNLKYQIMLDSVQGRAPGMAFLPYCSLPELEACMEV 115

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            +F E +HS ++ Y+I ++  D  E+F+       I ++A    +      + +   G  
Sbjct: 116 WSFMEMIHSRSYTYVIKNVYADPSEVFDKILSDDRILSRAASVTESYDDFINEAQGWGQS 175

Query: 180 DADQEFLQDL-------------------FVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           +  ++  + L                        + EG+ FY  FA   + G    M G 
Sbjct: 176 NLWRDMDKSLDTSLPVLEMKEVKRKLYRAVTNVNILEGIRFYVSFACSFAFGELKVMEGS 235

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLW---TKEFQQKSRTMLHEATLLEIAYAH 277
           A+    I RDE+ HL    +++N  +  +        KE +Q +  M  +    E  +A 
Sbjct: 236 AKIISLIARDENQHLAITQNILNNWRKGDDPEMVEIMKEEEQWTYQMFEKCVNEEKMWAE 295

Query: 278 ETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVIDLKK 331
                G  +GLN     QY++++ANRR   IG++P++      NP PW    I  K 
Sbjct: 296 YLFKDGSMIGLNDKLLHQYVEWVANRRMRSIGMKPVYDIAAKNNPLPWTEHWISSKG 352


>gi|126658748|ref|ZP_01729893.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110]
 gi|126620010|gb|EAZ90734.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110]
          Length = 347

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/352 (23%), Positives = 153/352 (43%), Gaps = 24/352 (6%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           SPI     + N +++ +    + +V  L   +YGWA   Y +   + W+P    +  D  
Sbjct: 9   SPIFNPTGKDNKENRHLWGGDTTNVINLNETRYGWARSIYQTMRESFWVPQRTDLSQDKL 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER  +K  L +    +S+   NI   + R+++ PE R  L  Q  +EA+
Sbjct: 69  DY---ANLIPGERRALKGILSYLNFLDSVQVANIPE-LSRYITAPEARMCLAEQTSQEAM 124

Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H  T+QYI  S+  +  + E+++ +++   +  +  +   Y Q L++        +   E
Sbjct: 125 HGETYQYITESIIPENEQHEVYDFWKQDLLLHERCEFIAGYYQNLAN--------NPTGE 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 +   + EG+ FY GF    +L  + ++ G A+  + I  DE  H++    +I +
Sbjct: 177 NYYMALIGDYLLEGLLFYQGFLFFYNLASSQRLAGCAKLIKQINMDELTHVSLYQKLITE 236

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +  +      + +   + H     EI + +       +G++  S E Y +++AN R 
Sbjct: 237 ATTKFSY-----SEDEITELFHTTVEREIEWTNHIFDGQILGVSKASTEAYTKYLANLRL 291

Query: 305 HQIGLEPLFKYTENP---FPWMSEVIDLKKEKNFFETRVTEYQQGAELK-WD 352
             IG+  ++   ENP     W       K +  FFET VT Y Q   +K WD
Sbjct: 292 KAIGIPAIYPKIENPYAHLDWADFKGIGKSKAAFFETEVTGYAQPTAVKGWD 343


>gi|158430770|pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide
           Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
           A Resolution
 gi|158430771|pdb|2RCC|B Chain B, Crystal Structure Of Putative Class I Ribonucleotide
           Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
           A Resolution
 gi|158430772|pdb|2RCC|C Chain C, Crystal Structure Of Putative Class I Ribonucleotide
           Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
           A Resolution
          Length = 346

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 152/332 (45%), Gaps = 17/332 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           +LN +S +V     +++ WA+  Y +   N W P E+    D   + +   LT+ E+   
Sbjct: 22  ILNGKSSNVLNWDDVRFSWAYPLYKNXLANFWTPFEINXSHDAKQFPT---LTETEQEAF 78

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
           K+ +G  A  +S+  +        +L++          +F+E VH+ ++ Y+++SL    
Sbjct: 79  KKIIGLLAFLDSVQTD-YSXRAAEYLTDSSLAALXSVLSFQEVVHNQSYSYVLSSLVPKA 137

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F  ++    +  +  + +   +            +   +   +  V+ V+ EG+ 
Sbjct: 138 TQDEIFEYWKHDDVLKERNEFIIDGYEKFVD--------NPTPKTFLESIVYDVILEGLN 189

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  K V  +    YI RDE LH+    ++  ++ +E P L T+E +  
Sbjct: 190 FYSGFAFFYNLARNQKXVSTSTXINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTF 249

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319
            +T L +A  LE  +    +     G+N    E Y+ FIAN+R  Q+G E  +   + NP
Sbjct: 250 VKTTLXKAADLEKDWFRYIIGDKIPGINPEDXETYISFIANKRAVQLGXEKPYPEIKHNP 309

Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELK 350
             W+    D+   + +FFE +  +Y + +   
Sbjct: 310 XKWIRAYEDVNSGKSDFFEQKSRQYAKVSADN 341


>gi|212638239|ref|YP_002314759.1| ribonucleotide-diphosphate reductase subunit beta [Anoxybacillus
           flavithermus WK1]
 gi|212559719|gb|ACJ32774.1| Ribonucleotide reductase, beta subunit [Anoxybacillus flavithermus
           WK1]
          Length = 345

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 146/334 (43%), Gaps = 20/334 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N ++  +     +KY   ++ Y     N W P E+ M DD+  W     L++ ER   
Sbjct: 20  IINGKASGILNWNDIKYSHFYDIYKMLLGNFWTPFEINMSDDIKQWH---ALSERERDAF 76

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
              +G  +  +S V  N + A+  ++++P  +        +E VH+ ++ Y++ S+    
Sbjct: 77  LHIIGLLSILDS-VQPNFIGAMKEYITDPSVKAIFSIIEQQEVVHNQSYSYVLASIEKLS 135

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++   F M R  P I  +    ++  +           +   + F + L    +V EG+ 
Sbjct: 136 EQHRAFEMARTNPHIYKRNEHVIRVYEAFRE-------QPTVETFCRALVA-SLVLEGIN 187

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQ 259
           FY+GFA   +L R  KM+  +    YI +DE  H  F   ++  +  ENP +     F  
Sbjct: 188 FYSGFAFFYNLARNQKMLKTSTMISYINKDELCHSYFISQLVRAVLWENPQIDENGAFSA 247

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
                + EA   E  ++   + +   G++    E+Y++++ N+R   +GL+  +   EN 
Sbjct: 248 WIYDYIDEAIRYETEWSRFVL-RDIDGIDVIEMEKYIEYLGNKRLRMLGLDDRYDADENS 306

Query: 320 FPWMSEVIDLK---KEKNFFETRVTEYQQGAELK 350
            PW+    D      + +FFE R   Y +  ++ 
Sbjct: 307 MPWIRVFSDENVNLGKTDFFEARPRSYTKTTDVN 340


>gi|45686047|ref|YP_003810.1| unknown [Ambystoma tigrinum virus]
 gi|37722471|gb|AAP33216.1| unknown [Ambystoma tigrinum stebbensi virus]
          Length = 387

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 73/324 (22%), Positives = 133/324 (41%), Gaps = 20/324 (6%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA          HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 72  CFKPFRYAWAENIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +                +    L    +  V+ EG+  +  F  +L+  
Sbjct: 190 EEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM G+ +  ++ +RDE++H+     +   +  E P + T++  +  +        LE
Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTEDLIELFKEDAERVAELE 296

Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328
            A+      +     GL     + Y+ ++ N R   +GL  L +      P PW+  +ID
Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRASNMGLPRLIERAPEACPIPWVKWLID 356

Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
                NFFE  VTEY+ G     W
Sbjct: 357 GADLTNFFENHVTEYETGGLTGSW 380


>gi|326782458|ref|YP_004322858.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2]
 gi|310003406|gb|ADO97803.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2]
          Length = 386

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 80/357 (22%), Positives = 140/357 (39%), Gaps = 29/357 (8%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +  TG++ +   E +VN   + M   +   V +    KY              W P EV 
Sbjct: 6   SEVTGMT-VFNKE-KVNTKKQPMFFGQPLGVQRYDTFKYPIFDRLTQQQLGYFWRPEEVS 63

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +Q D A +     LT ++R +   NL +    +S+      +A   + S PE    +   
Sbjct: 64  LQKDRADYAQ---LTPEQRHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMNVW 120

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
            F E +HS ++ YII ++  +  ++F+   +   I  ++    +      + +    T  
Sbjct: 121 EFMEMIHSRSYTYIIKNVYSNPEDVFDTILDDEKIIDRSTSVTESYDDFINHAHQYDTGT 180

Query: 181 AD-----------------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                              +  L        + EG+ FY  FA   + G    M G A+ 
Sbjct: 181 MWELAKDGHYTGQYDRRELKRKLYRAVANVNILEGIRFYVSFACSFAFGELKLMEGSAKI 240

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTK---EFQQKSRTMLHEATLLEIAYAHETM 280
              I RDES HL    +++   +  +     +   E ++    M  +    E A+A    
Sbjct: 241 LSLIARDESQHLVITQNILKNWRDGDDPEMQQIALEEEENVIKMFAKTVDEEKAWAEYLF 300

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKKEKN 334
             G  +GLN     QY+++IANRR   IGL+P++      NP PW    ++ K ++N
Sbjct: 301 KDGSMIGLNDRLLSQYVEWIANRRMKAIGLKPMYNVPAKSNPLPWTEHWLNSKGQQN 357


>gi|326782536|ref|YP_004323092.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1]
 gi|310002750|gb|ADO97149.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1]
          Length = 386

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 134/344 (38%), Gaps = 27/344 (7%)

Query: 15  KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +VN   + M   +   V +    KY    +         W P EV +Q D + +++   
Sbjct: 17  NKVNTKKQPMFFGQPLGVQRYDSYKYPVFDKLTQQQLGYFWRPEEVSLQKDRSDYQT--- 73

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L+D+++ +   NL +    +S+      +A   + S PE    +    F E VHS ++ Y
Sbjct: 74  LSDEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMVHSRSYTY 133

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ---------- 183
           II ++  D  E+F+   +   + ++A+   +        +                    
Sbjct: 134 IIKNVYSDPSEVFDTILDDEKVMSRASSVTESYDDFIQQAHQYDGSTMWDLAREGHTAGQ 193

Query: 184 -------EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                    L        + EG+ FY  FA   + G    M G A+    I RDES HL 
Sbjct: 194 YERRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDESQHLV 253

Query: 237 FGIDVINQIKIENPHLWTKEFQQK---SRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
              +++ + K  +        +++      M       E  +A     +G  +GLN    
Sbjct: 254 ITQNILRKWKEGDDPEMAVIAKEEQPFVAEMFKRTVNEEKMWADYLFKQGSMIGLNDRLL 313

Query: 293 EQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKKEKN 334
             Y+++IANRR   IGL+P+F      NP PW    ++ K ++N
Sbjct: 314 HNYVEWIANRRMKAIGLDPIFDVPAKNNPLPWTEHWLNSKGQQN 357


>gi|61806369|ref|YP_214728.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4]
 gi|61563913|gb|AAX46968.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4]
          Length = 387

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/345 (21%), Positives = 136/345 (39%), Gaps = 27/345 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
            + V+   + M   +   V +    KY    +         W P EV +Q D   ++   
Sbjct: 17  TEEVDTKKQPMFFGKPLGVQRYDSYKYPVFDKLTQQQLGYFWRPEEVSLQKDRGDYQQ-- 74

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT +++ +   NL +    +S+      +A   + S PE    +    F E +HS ++ 
Sbjct: 75  -LTPEQKHIFTSNLKYQIMLDSVQGRAPGMAFAPYCSLPELEGCINVWQFMEMIHSRSYT 133

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
           YII ++  D  E+F+   +  +I  +A    +      + +    + +A +         
Sbjct: 134 YIIKNVYSDPSEVFDTIIKDTNILQRAESVTKSYDDFVNDAHEYDSGNAWKFAREGHPAG 193

Query: 187 -----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
                              + EG+ FY  FA   + G    M G A+    I RDES HL
Sbjct: 194 TLDRRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLISRDESQHL 253

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKS---RTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
                ++ +    +     +  +++    + M       E A+A     +G  +GLNA  
Sbjct: 254 VITQQILKKWADGDDPEMQEIAKEEKSFVKDMFRNTVNEEKAWADYLFKEGSMIGLNARL 313

Query: 292 CEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKN 334
              Y+++IANRR   IGL+P++      NP PW    ++ K ++N
Sbjct: 314 LNNYVEWIANRRMKAIGLDPIYDQPLRNNPLPWTEHWLNSKGQQN 358


>gi|23100542|ref|NP_694009.1| ribonucleotide-diphosphate reductase subunit beta [Oceanobacillus
           iheyensis HTE831]
 gi|22778775|dbj|BAC15043.1| ribonucleoside-diphosphate reductase beta subunit [Oceanobacillus
           iheyensis HTE831]
          Length = 347

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 75/330 (22%), Positives = 145/330 (43%), Gaps = 18/330 (5%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     + Y   ++ Y     N+W   EV M  D+  + +   L+ +E+    + 
Sbjct: 26  GESSGILNWNDIAYPHWYKMYKRLVGNYWQADEVNMSSDVKQFST---LSKEEQDAYLKI 82

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143
           +G  ++ ++      +L    + ++P  +  +   A +EAVH+ ++ Y+++S+    ++ 
Sbjct: 83  IGLLSTLDAPQTRTALLISL-YATDPSVQSIMAVIAQQEAVHNESYSYVLSSVVSWNEQN 141

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E F + R    +  +     +               +   E +    V+  + EGM+FY+
Sbjct: 142 EAFQLGRTDELLLKRNEQLTEQYNAFVD--------NPSMENMLKTLVYTSLLEGMFFYS 193

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA    L R NKMVG +    YI RDE  H  F  ++      ENP     EF      
Sbjct: 194 GFAFFYHLARQNKMVGTSTMISYINRDELEHGRFITELFRATLEENPSHNNAEFIDWIYD 253

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322
              ++  LEI ++H  +     G++    + Y+++ AN+    +GLE L+  + ENP  W
Sbjct: 254 RFQQSVELEIEWSHYVL-NKLEGIDMDDMDGYIKYRANKMLRMMGLEELYPQHVENPMKW 312

Query: 323 MSEVIDL--KKEKNFFETRVTEYQQGAELK 350
           +   +D     + +FFE +  +Y + ++L 
Sbjct: 313 VRAYVDNFDGTKTDFFEQKSRQYTKTSDLN 342


>gi|89097912|ref|ZP_01170799.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           NRRL B-14911]
 gi|89087414|gb|EAR66528.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           NRRL B-14911]
          Length = 353

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/333 (24%), Positives = 159/333 (47%), Gaps = 19/333 (5%)

Query: 24  MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N   S++     +++ WA+ KY     N W P E+ M  D+  +     L+++E+   
Sbjct: 28  IINGECSNILNWDDVRFQWAFPKYKRMLANFWTPFEINMSQDIKQF---PDLSEEEKEAF 84

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
            + +G  A  +S+  +     +  +L++      ++  A +E +H+H++ Y+++S+    
Sbjct: 85  LKIIGLLALLDSIQTD-YAGKVADYLTDSSLSALMIILAQQEVIHNHSYSYVLSSIVDKN 143

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F  +R  P++  +  +            +    +    + L    +F VV EG++
Sbjct: 144 KQDEVFEFWRTEPALIKRNEFVA--------SGYRNFAESPTVDSLLKSIIFDVVLEGLF 195

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA    L R  KMV  +    YI RDE LH++  + +  +I  E P   TKE  + 
Sbjct: 196 FYSGFAFFYHLARNQKMVATSTMINYINRDEQLHVDLFVKIFREILDEYPEQNTKELAEF 255

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENP 319
           + +   EA  LEI +A   +     G+     E+Y++F AN R +Q+G    F+ +  NP
Sbjct: 256 AESTFREAAYLEIEWARSIIGDKISGILIGDVEEYIRFYANVRSNQLGFNRPFEGSRTNP 315

Query: 320 FPWM--SEVIDLKKEKNFFETRVTEYQQGAELK 350
             W+   E +DL  + +FFE +  +Y +   + 
Sbjct: 316 LRWIKAYEEVDL-GKSDFFEQKPRQYVKVNTVD 347


>gi|311977695|ref|YP_003986815.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba
           polyphaga mimivirus]
 gi|77416594|sp|Q7T6Y9|RIR2_MIMIV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|55664859|gb|AAQ09571.2| ribonucleotide reductase small subunit [Acanthamoeba polyphaga
           mimivirus]
 gi|308204332|gb|ADO18133.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba
           polyphaga mimivirus]
          Length = 417

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 150/332 (45%), Gaps = 30/332 (9%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            + +L+ +S+   + P+KY   W+ Y     N+W   EV +  D+  W   N L+DD+R 
Sbjct: 98  KEPILSLKSEQYTVHPIKYQKVWDNYKDQMKNYWTVEEVDLAKDVNDWN--NHLSDDDRN 155

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+++ +V  NI   +   +   E       Q   E  H   +  ++T+   
Sbjct: 156 FIMHVLAFFAAADGIVNANIKENLIDVVKIKEAECAYGFQYAMENAHGEMYSLMLTTFVK 215

Query: 141 DE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D+    +L N  + +PSI  KA+W  ++ ++             D+ +   L  F +V E
Sbjct: 216 DDALRNKLINSIKTMPSIKKKADWCNKWIKS-------------DKTYAHKLVAFSIV-E 261

Query: 198 GMWFYTGFAQILSLGRA--NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
           G++F   FA I  L     + M G+    Q+I RDE+ H+     + + +          
Sbjct: 262 GVFFSGSFASIFWLKTREMHVMPGLIISNQFIARDENKHVELACIMYSLLNNRLK----- 316

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +     ++ EA  +E  + ++++P   +G+N+    QY++++A+R    +G    F  
Sbjct: 317 --ESVVYQIIDEAIEIEEEFINDSLPCKLLGMNSELMSQYIKYVADRLLVDLGYRKKFNV 374

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
             NPF +M + ID+  + NFFE R   Y    
Sbjct: 375 D-NPFEYMKK-IDVFVKANFFEKRNDAYSNAN 404


>gi|294501621|ref|YP_003565321.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           megaterium QM B1551]
 gi|295706969|ref|YP_003600044.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           megaterium DSM 319]
 gi|294351558|gb|ADE71887.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           megaterium QM B1551]
 gi|294804628|gb|ADF41694.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           megaterium DSM 319]
          Length = 347

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 163/334 (48%), Gaps = 19/334 (5%)

Query: 24  MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N +S ++     +++ WA+ KY     N W P E+ M  D+  +     LT DE+   
Sbjct: 21  IINGKSSNILNWDDVRFSWAFPKYKRMLANFWTPFEINMGQDIKQF---PQLTADEQESF 77

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
            + +G  A  +S+ ++     +  ++++      ++  A +E VH+H++ Y+++SL    
Sbjct: 78  LKIIGLLALLDSIQSD-YASKVADYVTDSSINALMIILAQQEVVHNHSYSYVLSSLVPKG 136

Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            + E+F  +R    + A+ ++            +   +++A  E      V+ V+ EG++
Sbjct: 137 KQDEVFEYWRTDEKLRARNDFITN--------GYKAFSEEATVENFLKSMVYDVILEGLF 188

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R  KMV  +    YI RDE LH+     +  ++  ENP   T+E +  
Sbjct: 189 FYSGFAFFYNLARNQKMVATSTMINYINRDEQLHVGLFEKIFKEVLNENPAYRTEELETF 248

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYT--E 317
                 EA  LEI +A   + + F G+     +QY++++AN+RC+Q+G     F     E
Sbjct: 249 VVETFQEAARLEIEWAESVIGEKFDGITMKELQQYIEYMANKRCNQLGFGRAAFPEAPIE 308

Query: 318 NPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELK 350
           NP  W+    ++   + +FFE +  +Y + ++  
Sbjct: 309 NPLRWIIAYQEVDLGKTDFFEQKSRQYTKASDAN 342


>gi|326483608|gb|EGE07618.1| hypothetical protein TEQG_06532 [Trichophyton equinum CBS 127.97]
          Length = 317

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 117/275 (42%), Gaps = 25/275 (9%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
           ++    +    ++  L        L P+KY   W+ Y  A  + W   E+ +  D+  W 
Sbjct: 65  VKPKTPKELEAEEPRLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 124

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             N L DDER  I   L FFA+S+ +V  N++      +  PE R +   Q   E +HS 
Sbjct: 125 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 182

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           T+  +I +   ++ +   LF     +P I  KA+WA+++ Q            D +  F 
Sbjct: 183 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKNSTFS 230

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           Q L  F  V EG++F   FA I  L +   M G+    + I RDE LH +F   + + + 
Sbjct: 231 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHL- 288

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
                   +        ++ EA  +E  +  + +P
Sbjct: 289 ------NYRPDPNAVEAIITEAVTIEQEFLTDALP 317


>gi|18656506|gb|AAL77807.1|AF389451_14 ribonucleoside-diphosphate reductase beta subunit [Tiger frog
           virus]
          Length = 387

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 73/324 (22%), Positives = 133/324 (41%), Gaps = 20/324 (6%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 72  CFKPFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +                +    L    +  V+ EG+  +  F  +L+  
Sbjct: 190 VEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R+ KM G+ +  ++ +RDE++H+     +   +  E P + TK+  +  +        LE
Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDIIELFKEDAERVAELE 296

Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328
            A+      +      L     + Y+ ++ N R   +GL  L +      P PW+  +ID
Sbjct: 297 EAFVDLAFQECGPVCELEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356

Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
                NFFE  VTEY+ G     W
Sbjct: 357 GADLTNFFENHVTEYETGGLTGSW 380


>gi|326784253|ref|YP_004324793.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5]
 gi|310003484|gb|ADO97880.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5]
          Length = 388

 Score =  179 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 76/345 (22%), Positives = 137/345 (39%), Gaps = 27/345 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + +VN   + M   +   V +    KY    +         W P EV +Q D + +++  
Sbjct: 18  KNKVNTKKQPMFFGQPLGVQRYDEYKYPVFDKLTQQQLGYFWRPEEVSLQKDRSDYQT-- 75

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+ +++ +   NL +    +S+      +A   + S PE    +    F E +HS ++ 
Sbjct: 76  -LSPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMIHSRSYT 134

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ--------- 183
           YII ++  D GE+F+   +  ++  +A+   +      + +                   
Sbjct: 135 YIIKNVYPDPGEVFDTILDDENVMERASSVTESYDDFINHAHEYDNGQMWNLARDGHTTG 194

Query: 184 --------EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
                     L        + EG+ FY  FA   + G    M G A+    I RDES HL
Sbjct: 195 MYDRHELKRKLYRAVANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDESQHL 254

Query: 236 NFGIDVINQIKIENPHLWTK---EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +++ + K  +     +   E +   + M       E  +A     +G  +GLN   
Sbjct: 255 VITQNILRKWKEGDDPEMKEIAKEEKGWVQHMFERTVNEEKVWADYLFKQGSMIGLNDRL 314

Query: 292 CEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKN 334
              Y+++IANRR   IGL+P+F      NP PW    ++ K ++N
Sbjct: 315 LHNYVEWIANRRMKSIGLDPMFDIPAKNNPLPWTEHWLNSKGQQN 359


>gi|317130866|ref|YP_004097148.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522]
 gi|315475814|gb|ADU32417.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522]
          Length = 345

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 159/338 (47%), Gaps = 16/338 (4%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
            N   + +    S+V     +++ WA+  Y +   N W P E+ M +D+  +   + L  
Sbjct: 15  PNASTRIINGESSNVLNWDDVRFKWAYPLYKNMLANFWTPFEINMGNDVKQY---DKLEP 71

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            ER    + +G  A  +S+  +   + + R+L++      +   +F+E VH+ ++ Y+++
Sbjct: 72  KEREAFDKIIGLLAFLDSIQTD-YSMHVARYLTDSSLSALMTVLSFQEVVHNQSYSYVLS 130

Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           SL     + E+F  ++    +  + ++  +  +   S        +   E      V+ +
Sbjct: 131 SLTTKAKQDEIFEYWKHDKVLRERNDFIAEGYEAFVS--------NPTPETFLHSIVYDI 182

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG+ FY+GF+   +L R  KMV  +    YI RDE  H+    ++  ++  E P L +
Sbjct: 183 ILEGLNFYSGFSFFYNLARNQKMVSTSTMINYINRDEQHHVYLFANIFKELMHEYPELNS 242

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
           ++  +  +    +   LEI +A   +     G++    E Y++F+AN+R +++G+E  F+
Sbjct: 243 EKTHRFVQETFKKGAELEINWAKYIIGDQMEGIDIGDLEAYIKFMANKRVNELGVERPFE 302

Query: 315 -YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELK 350
            Y  NP  W+    D+   + +FFE +  +Y + ++  
Sbjct: 303 GYRNNPMRWIKIYEDVNSGKTDFFEQKSRQYTKVSDDN 340


>gi|326564074|gb|EGE14316.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 103P14B1]
 gi|326570555|gb|EGE20595.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis BC8]
 gi|326573198|gb|EGE23167.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis CO72]
          Length = 361

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 133/333 (39%), Gaps = 12/333 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +  +          +   L    +V++    +Y    +      +  W P E+ +  D  
Sbjct: 1   MYSVFNPNPNDATQEPMFLGESVNVSRFDKQRYPIFEQLTEKQISFFWRPEEIDVSKDRR 60

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L + E+ +   NL +    +S+   +  + +   +S PE   ++   AF E++
Sbjct: 61  DF---IELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPELETWIETWAFFESI 117

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H+ ++ +II ++  +  E+ +     P I  +A    +Y   L S S           + 
Sbjct: 118 HARSYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLSLEYQQGKQVDMYE 177

Query: 187 QD-----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
                    +   V E + FY  FA   +      M G A+  + I RDE+LHLN    +
Sbjct: 178 LRKRLYLCIMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKLIARDEALHLNGTQHI 237

Query: 242 INQIKIENPHLW--TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
           +  +  E+      T+  + +   +   A   E A+       G  +GLN     QY+Q+
Sbjct: 238 LTLLVKEHEDYQTITQTCKDEIYDIFESAYEQERAWIDYLFKDGSMIGLNKEILTQYLQY 297

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           I + R   IGLEP+F  T+NP PW++  +    
Sbjct: 298 ITDIRMSAIGLEPVFN-TKNPIPWINNWLSSDN 329


>gi|326567429|gb|EGE17544.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis BC1]
          Length = 361

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 133/333 (39%), Gaps = 12/333 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +  +          +   L    +V++    +Y    +      +  W P E+ +  D  
Sbjct: 1   MYSVFNPNPNDATQEPMFLGESVNVSRFDKQRYPIFEQLTEKQISFFWRPEEIDVSKDRR 60

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L + E+ +   NL +    +S+   +  + +   +S PE   ++   AF E++
Sbjct: 61  DF---IELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPELETWIETWAFFESI 117

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H+ ++ +II ++  +  E+ +     P I  +A    +Y   L S S           + 
Sbjct: 118 HARSYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLSLEYQQGKQVDMYE 177

Query: 187 QD-----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
                    +   V E + FY  FA   +      M G A+  + I RDE+LHLN    +
Sbjct: 178 LRKRLYLCIMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKLIARDEALHLNGTQHI 237

Query: 242 INQIKIENPHLW--TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
           +  +  E+      T+  + +   +   A   E A+       G  +GLN     QY+Q+
Sbjct: 238 LTLLVKEHEDYQTITQTCKDEIYDIFESAYEQERAWIDYLFKDGSMIGLNKEILTQYLQY 297

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           I + R   IGLEP+F  T+NP PW++  +    
Sbjct: 298 ITDIRMSAIGLEPVFN-TKNPIPWINNWLSSDN 329


>gi|113200701|ref|YP_717864.1| ribonucleotide reductase subunit B [Synechococcus phage syn9]
 gi|76574600|gb|ABA47165.1| ribonucleotide reductase subunit B [Synechococcus phage syn9]
          Length = 387

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/357 (20%), Positives = 137/357 (38%), Gaps = 29/357 (8%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
               G++ +   E +V+   + M   +   V +    KY              W P EV 
Sbjct: 7   KEVEGMT-VFNKE-KVDTKKQPMFFGQPLGVQRYDSYKYPVFDRLTQQQLGYFWRPEEVS 64

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +Q D + +     LT++++ +   NL +    +S+      +A   + S PE    +   
Sbjct: 65  LQKDRSDYAQ---LTENQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVW 121

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
            F E +HS ++ +II ++  +  ++F+   E   +  +A+   +        +   G   
Sbjct: 122 EFMEMIHSRSYTHIIKNVYPNPSDVFDTILEDERVLERASSVTESYDDFIQHAQEYGNGT 181

Query: 181 AD-----------------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                              +  L        + EG+ FY  FA   + G    M G A+ 
Sbjct: 182 MWELAKEGHVAGQYDRRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKI 241

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT---MLHEATLLEIAYAHETM 280
              I RDE+ HL    +++N+ +  +        +++      M       E  +A    
Sbjct: 242 LSLIARDENQHLVITQNILNKWREGDDPEMAIIAKEEEVNVVDMFKRTVNEEKRWADYLF 301

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKN 334
             G  +GLN      Y+++IANRR   IGL+P++      NP PW    ++ K ++N
Sbjct: 302 KDGSMIGLNDRLLHNYVEWIANRRMKAIGLKPIYDIPAKNNPLPWTEHWLNSKGQQN 358


>gi|326782933|ref|YP_004323331.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4]
 gi|310004192|gb|ADO98586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4]
          Length = 388

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/357 (21%), Positives = 142/357 (39%), Gaps = 29/357 (8%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           A   G++ +   + +VN   + M   +   V +    KY        S     W P EV 
Sbjct: 8   AEVKGMT-VFN-KNKVNTKKQPMFFGQPLGVQRYDEYKYPVFDRLTQSQLGYFWRPEEVS 65

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +Q D + +++   LT +++ +   NL +    +S+      +A   + S PE    +   
Sbjct: 66  LQKDRSDYQT---LTPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVW 122

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----- 175
            F E +HS ++ YII ++  D  E+F+   +  ++ ++A+   +      + +       
Sbjct: 123 EFMEMIHSRSYTYIIKNVYPDPSEVFDTILDDENVMSRASSVTKSYDEFINSAHEFDNCQ 182

Query: 176 ------------TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                       T  +   +  L        + EG+ FY  FA   + G    M G A+ 
Sbjct: 183 TWDLARQGHLTGTYERKELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKI 242

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS---RTMLHEATLLEIAYAHETM 280
              I RDES HL    +++      +     +  +++      M       E  +A+   
Sbjct: 243 LSLIARDESQHLVITQNILKNWAKGDDSEMAEIAKEEKPFVVDMFKRTVEEEKTWANYLF 302

Query: 281 -PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVIDLKKEKN 334
                +GLN      Y+++IANRR   IGL+P+F      NP PW    ++ K ++N
Sbjct: 303 REGSMIGLNDRLLHNYVEWIANRRMKAIGLDPVFDQVARNNPLPWTQHWLNSKGQQN 359


>gi|331035505|gb|AEC53062.1| ribonucleotide reductase subunit B [Synechococcus phage S-CRM01]
          Length = 381

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 135/342 (39%), Gaps = 27/342 (7%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           V++  + M   +   + Q L  KY    +   +     W P EV +Q D + ++    L 
Sbjct: 14  VDLKQQPMFFGQPLGIQQYLDYKYPLFEKLTQTQLGFFWRPEEVSLQKDRSDYQ---NLR 70

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +++ +   NL +    +S+      LA   + S PE    +    F E +HS ++ +II
Sbjct: 71  PEQKHIFTSNLKYQVMLDSVQGRGPSLAFLPYCSLPELESCMEVWGFMEMIHSRSYTHII 130

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ-------- 187
            +L     E+F+       I  +A    +   +  + +      +  +   +        
Sbjct: 131 KNLYPQPEEVFSTILSDSKIMERAKSVTESYDSFINAAHHYDNGNGWKFAKEGVPASQAE 190

Query: 188 ---------DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                       +   + EG+ FY  FA   + G    M G A+    I RDE+ HL   
Sbjct: 191 RYELKRKLFRAVMTVNILEGIRFYVSFACSFAFGELKVMEGSAKIISLIARDENQHLFLT 250

Query: 239 IDVINQIKIENPHLWTKEFQQKSRT---MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
            ++IN  +  +     K + ++      +   A   E A+A      G  +GL+      
Sbjct: 251 QNIINNWRNNDDPEMKKIYNEEIDHTTSLFEAAVDQEKAWAQYLFKTGSMIGLSEKLLCN 310

Query: 295 YMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKN 334
           Y+++IANRR   IG++P++      NP PWM   +  K  +N
Sbjct: 311 YVEWIANRRMKAIGIKPIYEIPANSNPLPWMDHWLKSKGVQN 352


>gi|326781924|ref|YP_004322326.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2]
 gi|310003114|gb|ADO97512.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2]
          Length = 397

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/354 (22%), Positives = 137/354 (38%), Gaps = 29/354 (8%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
               G++ +   E+ VN   + M   +   V +    KY    +         W P EV 
Sbjct: 17  KEVEGMT-VFNTEQ-VNTKKQPMFFGKPLGVQRYDSYKYPVFDKLTTQQLGYFWRPEEVS 74

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +Q D   +++   L  +++ +   NL +    +S+      +A   + S PE    +   
Sbjct: 75  LQKDRGDYQT---LRPEQKHIYTSNLKYQIMLDSIQGRGPGMAFIPYCSLPELEACMEVW 131

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
            F E +HS ++ YII ++  D  E+F+       I  +A+            +   GT +
Sbjct: 132 GFMEMIHSRSYTYIIKNVYSDPSEVFDKIVTDDRILERASSVTASYDDFIRSAQQWGTGN 191

Query: 181 ADQEFLQ-----------------DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
             QE  +                        + EG+ FY  FA   + G    M G A+ 
Sbjct: 192 MWQEDFRQSPSSQWEIKDVKRKLYRAVANVNILEGIRFYVSFACSFAFGELKLMEGSAKI 251

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLW---TKEFQQKSRTMLHEATLLEIAYAHETM 280
              I RDE+ HL    +++N+    +        KE ++ +      A   E  +A    
Sbjct: 252 ISLIARDENQHLAITQNILNKWAQGDDPEMKQIMKEEEEWTYKAFDNAVNEEKRWADYLF 311

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKK 331
             G  +GLN    +QY++++ANRR   IGL+P +    + NP PW    I  K 
Sbjct: 312 KDGSMIGLNDKLLQQYVEWVANRRLKAIGLKPQYDIAASANPLPWTQHWISSKG 365


>gi|34482564|emb|CAE09564.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN [Wolinella
           succinogenes]
          Length = 283

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 150/293 (51%), Gaps = 13/293 (4%)

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D   +    GLT  E+L   R L      +SL  NN++  +  ++++PE    L+RQ
Sbjct: 1   MTPDKRDYN--GGLTPAEKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQ 58

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           AFEEA+HS ++  ++ S+  +  E++ M+R    + +K +      + L+        K+
Sbjct: 59  AFEEALHSQSYAVMVESISANTDEIYEMWRVDMQLKSKNDHIAGVYEELA--------KN 110

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
                +        + EG++FY GF+   +L R+ KM+G A+  ++I RDE  HL    +
Sbjct: 111 PTDSAMLKAMFANQILEGIYFYAGFSFFYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQN 170

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +IN +K E P L+TK  +++   M  +A  +E A+         +GL +    +Y+Q++A
Sbjct: 171 MINALKKERPDLFTKSLEEEVVEMFRKAVAVESAWGDYITQGQILGLTSEIIHEYIQYLA 230

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
           + R  ++G+  L+   ++P  W+ +     + + NFFE  VT Y +G+ + +D
Sbjct: 231 DDRLKRVGMPILYN-AKHPIKWVDQFSSFNEQKTNFFEGNVTNYAKGS-INFD 281


>gi|172058301|ref|YP_001814761.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium
           sibiricum 255-15]
 gi|171990822|gb|ACB61744.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sibiricum
           255-15]
          Length = 347

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 145/330 (43%), Gaps = 21/330 (6%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++   +  +     + Y   +  Y    +N W+P E+ M  D+  W     L++ E+   
Sbjct: 21  IIGGETSSIVNWNDIAYPQFYSIYKQLLSNFWIPDEISMSKDMQQWNQ---LSEREQDAF 77

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
           KR +G  +  +S+     +L      S+      L   A +E VH+ ++ Y+++SL    
Sbjct: 78  KRIIGLLSILDSVQTR-YILESAMFTSDASIHAILAIVAQQEVVHNQSYSYVLSSLVPLS 136

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F++ ++   +  +  + L   +   +        D   E      V  +V EG+ 
Sbjct: 137 EQNRIFDIAKDDDMVMKRNAFILDLYEDFQN--------DRTPENFAKSLVASIVLEGIN 188

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW-TKEFQQ 259
           FY+GFA   +L R  KMVG +    YI RDE  H  F   ++  +  E+P +     F +
Sbjct: 189 FYSGFAFFYNLARHQKMVGTSTMISYIQRDELQHSYFISQLLRAVLTEHPDIDADGSFTK 248

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTEN 318
                   A  LEI ++   + +   GL+      Y++++AN+R   IGL+ L++ + E+
Sbjct: 249 FVYATFERAVDLEIEWSEYVL-RDLDGLDVSEMRDYVKYLANKRLRVIGLDDLYEGHDED 307

Query: 319 PFPWMSEVID---LKKEKNFFETRVTEYQQ 345
             PW+    D      + +FFE +   Y +
Sbjct: 308 VMPWIRAYSDDSMNATKSDFFEQKSRSYAK 337


>gi|254796877|ref|YP_003081714.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia
           risticii str. Illinois]
 gi|254590113|gb|ACT69475.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia
           risticii str. Illinois]
          Length = 286

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 127/294 (43%), Gaps = 18/294 (6%)

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M DD+  W  K   T  E+ ++ +   FF  ++  V +  +         PE    L   
Sbjct: 1   MADDVQDWHHKICST--EKNLLTQIFRFFTQADVEVHDCYMRHYAGVFKPPEVCMMLTAF 58

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           A  E +H   + +++ ++G+ E E +  + +   +  K  +                  D
Sbjct: 59  ANMETIHIAAYAHLLDTVGMPETE-YLAFTKYRQMKEKCEY------------LKAFKMD 105

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           +  E  + L V+    EG+  +  FA +L+  R NKM G+ +   Y +RDE+LH N    
Sbjct: 106 SPTEIAKTLAVYGAFTEGLQLFASFAILLNFPRFNKMKGMGQIIAYSVRDETLHSNSITK 165

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
           +     +EN  +   + + + R +       E A+       G   GL A   ++Y+++I
Sbjct: 166 LFRTFLLEND-IDKLKLEAEIREICDAMVHHEDAFIDLAFEMGDVEGLKASEVKEYIRYI 224

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ-GAELKWD 352
           AN R  Q+G   +++   NP  W+  V++  +  NFFE + TEY +   +  WD
Sbjct: 225 ANLRLKQLGFSEIYEQKVNPLLWLEAVLNTVEHTNFFENKATEYSKAATKGTWD 278


>gi|269864629|ref|XP_002651641.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220064151|gb|EED42415.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 277

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 81/289 (28%), Positives = 132/289 (45%), Gaps = 31/289 (10%)

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           M  D   + +   LT +E+  IK  L FFA+S+ +V  N+V      +   E + +   Q
Sbjct: 1   MTFDCEHFST---LTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQ 57

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E +HS  +  +I +L  D+ E   LFN    +PSI  KA WA ++  + +S      
Sbjct: 58  IAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFD---- 113

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                        V +   EG++F   FA I  L +   M G+    + I RDE LH +F
Sbjct: 114 ----------TRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDF 163

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
              +   I  +               ++ EA  +E  +  E++P   +G+N     QY++
Sbjct: 164 ACLLHKYINNK---------CTVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIE 214

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           F+A+R    +G + ++  + NPF +M E I L+ + NFFE R   YQ+G
Sbjct: 215 FVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 261


>gi|67906414|gb|AAY82584.1| ribonucleotide reductase subunit 2 [Carassius carassius]
          Length = 246

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 111/269 (41%), Gaps = 26/269 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L        + P++Y   W+ Y  A  + W   EV +  DL  W   + L D+ER  
Sbjct: 1   EPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHW---DSLKDEERYF 57

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +   D
Sbjct: 58  ISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKD 117

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             E   LFN    +P +  KA+WAL +                      +  V +   EG
Sbjct: 118 PKERDFLFNAIETMPCVKKKADWALNWIG-------------DKNAQYGERVVAFAAVEG 164

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   +         K  +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVN-------KPSE 217

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           +  + ++  A  +E  +  + +P   +G+
Sbjct: 218 ETVKKIIVNAVAIEQEFLTDALPVKLIGM 246


>gi|225849393|ref|YP_002729557.1| ribonucleoside-diphosphate reductase subunit beta
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644764|gb|ACN99814.1| ribonucleoside-diphosphate reductase, beta subunit
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 326

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 92/332 (27%), Positives = 156/332 (46%), Gaps = 14/332 (4%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
            + +V D   L            KY    E Y       W P E+ +Q D+  +KS   L
Sbjct: 5   GKTSVRDNIRLTENP--------KYPVFRELYTKQKKAVWFPEELNIQQDVLDYKS---L 53

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           T  E+ +    +G+FASSE LV N +    +  L++P  +     Q F E +HS  F+ I
Sbjct: 54  TPTEKDLFDSAVGYFASSELLVQNVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEII 113

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + S  +D  +++N+  E   +  K    ++    ++       T +  ++ L  + +  +
Sbjct: 114 LNSFDMDRKKIYNITLEDKLLKEKQELIVRAVDRITYGKADPDTLEGKKQILTSILLNNI 173

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY+ FA   ++    KM  +    + I+ DESLHL  GI+ I  +  ENP +  
Sbjct: 174 IQEGLFFYSAFAHFFAMKDTGKMKNVVAGVELILIDESLHLQNGIEAILTMVEENPEIVD 233

Query: 255 K-EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
              F +  R  + +A  LE+ Y           G++    E+YM++IA+RR  ++G +P 
Sbjct: 234 DYNFVENIRQSIIDAVELELNYLKTKFGGTTIFGVSYNELERYMKYIADRRLVELGFDPQ 293

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
           F   +NP  ++ +  D+KK  NFFE   TEY 
Sbjct: 294 FGIDQNPLKFLQKE-DVKKLTNFFEVSSTEYT 324


>gi|229542075|ref|ZP_04431135.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1]
 gi|229326495|gb|EEN92170.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1]
          Length = 347

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 147/330 (44%), Gaps = 18/330 (5%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
              S +     L Y   ++ Y     N+W   EV M  D+  +     L++ E+    + 
Sbjct: 26  GKSSGILNWNDLAYPHWYKTYKRLLGNYWQSDEVNMSTDVKQF---PLLSEKEQETFLKI 82

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143
           +   A+ +S     I+LA   + ++P  +  L   A +EAVH+ ++ YI++S+     + 
Sbjct: 83  ISLLATLDSSQTRTILLASL-YATDPSIQSILAVIAQQEAVHNESYSYILSSVVSLDKQN 141

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E F + R+ P +  +    ++     +           D E +    V+  + EG++FY+
Sbjct: 142 EAFEIGRKDPVLLKRNKKLMEQYNAFAQQ--------PDVEDIVKTLVYSTLLEGLFFYS 193

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GFA   +L R NKMVG +    YI RDE  H  F  ++I  +  E+P L T  F      
Sbjct: 194 GFAFFYNLARQNKMVGTSTMISYINRDELEHGRFISELIRAVLSEHPELNTPAFSDWVYA 253

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322
              E+  LE  ++   + +   G++      ++++ AN+    IGL  L+  + ENP  W
Sbjct: 254 RFRESVDLETEWSEYVL-QDVEGIDLEEMAGFIKYRANKMLRMIGLSELYPEHVENPMKW 312

Query: 323 MSEVIDL--KKEKNFFETRVTEYQQGAELK 350
           +    D     + +FFE +   Y + ++L 
Sbjct: 313 IRAYADNFDATKTDFFEQKSRSYTKVSDLN 342


>gi|125554800|gb|EAZ00406.1| hypothetical protein OsI_22421 [Oryza sativa Indica Group]
          Length = 244

 Score =  176 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 115/249 (46%), Gaps = 26/249 (10%)

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
              +   E R +   Q   E +HS  +  ++ +   D  E   LF     VP++  KA+W
Sbjct: 1   MSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGAEKDRLFRAIDTVPAVRRKADW 60

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
           A+++              D  + F + L   +   EG++F   F  I  L +   M G+ 
Sbjct: 61  AMRWI-------------DGGERFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPGLT 106

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
              + I RDE LH +F   + + ++ +         + + R ++ +A  +E  +  + +P
Sbjct: 107 FSNELISRDEGLHCDFACLLYDLLRGKLD-------EARVREIVADAVDIEREFVCDALP 159

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
              VG+N     QY++F+A+R    +G + ++    NPF WM E+I L+ + NFFE RV 
Sbjct: 160 VALVGMNGDLMSQYIEFVADRLLMALGCKKMYNVA-NPFDWM-ELISLQGKTNFFEKRVG 217

Query: 342 EYQQGAELK 350
           +YQ+ + + 
Sbjct: 218 DYQKASVMS 226


>gi|167461830|ref|ZP_02326919.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322383591|ref|ZP_08057349.1| ribonucleotide-diphosphate reductase subunit beta-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152059|gb|EFX44995.1| ribonucleotide-diphosphate reductase subunit beta-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 343

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 79/339 (23%), Positives = 154/339 (45%), Gaps = 18/339 (5%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
            N  DK +  + S +     ++    ++ Y     NHW+P+E+PM  D   ++    LT 
Sbjct: 13  PNKSDKLIEGSCSSILNWDDIRKPEMYKLYKVLIANHWIPSEIPMNKDKLQFEQ---LTA 69

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+   K+ +G  A  +S+  N  V  +  + ++            +E +H+ ++ Y+++
Sbjct: 70  QEQETYKKIIGLLAVLDSMQTN-FVTDVGNYFTDSSLVAIAAIINQQEVIHNQSYSYVLS 128

Query: 137 SLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           S+   E   E+F  +++   +  +  +  +  Q            +       +  V  +
Sbjct: 129 SITNYEVQKEVFEYWKKDEILLERNLFIAELYQRFRD--------EPTPATFFEAVVADM 180

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY+GFA    L R  KM+G ++   YI RDE+ H  F  +V   +  + P L T
Sbjct: 181 ILEGIFFYSGFAFFYHLARQQKMLGTSQMISYIQRDEAQHAYFFGEVFKLLLTDFPELNT 240

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            E  Q     + +A  LE  +AH  +     G++     +Y++FIAN+R   +GL+P ++
Sbjct: 241 SERIQYVYDTIDQAVKLEEKWAHYVL-NQIDGIDLDDFSRYIRFIANKRLKTMGLQPAYE 299

Query: 315 YTENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAELK 350
             +N  PW    S+    + + +FFE +   Y + ++  
Sbjct: 300 GVDNCMPWIRPFSDEALNQTKTDFFEAKSRTYAKVSDDN 338


>gi|188996383|ref|YP_001930634.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931450|gb|ACD66080.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 326

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 157/332 (47%), Gaps = 14/332 (4%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
            + +V D   L+           +Y    E Y       W P E+ +Q D+  +KS   L
Sbjct: 5   GKTSVRDNIRLSENP--------RYPIFKELYTKQKKAVWFPEELNIQQDVLDYKS---L 53

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
           +  E+ +    +G+FASSE LV N +    +  L++P  +     Q F E +HS  F+ I
Sbjct: 54  SPTEKDLFDSAVGYFASSELLVQNVVGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEII 113

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           + S  +D   ++N+  E   +  K    ++    ++       T +  ++ L  + +  +
Sbjct: 114 LNSFDMDRKRIYNITLEDKLLKEKQELIVRAVDRITYGKADPDTIEGKKQILTSILLNNI 173

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + EG++FY+ FA   ++    KM  +    + I+ DESLHL  GI+ I  +  ENP +  
Sbjct: 174 IQEGLFFYSAFAHFFAMKDTGKMKNVVSGVELILIDESLHLQNGIEAILTMVEENPEIVD 233

Query: 255 K-EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             +F +  R  + +A  LE+ Y           G++    E+YM++IA+RR  ++G +P 
Sbjct: 234 DYQFVENIRQSIIDAVELELNYLKTKFGGTTIFGVSYGELERYMKYIADRRLIELGFDPQ 293

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
           F   +NP  ++ +  D+KK  NFFE   TEY 
Sbjct: 294 FGIDQNPLKFLQKE-DVKKLTNFFEVSSTEYT 324


>gi|319655055|ref|ZP_08009124.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           2_A_57_CT2]
 gi|317393250|gb|EFV74019.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
           2_A_57_CT2]
          Length = 345

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 86/328 (26%), Positives = 156/328 (47%), Gaps = 19/328 (5%)

Query: 24  MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N   S++     +++ WA+ KY     N W P E+ M  D+  +     L   E+   
Sbjct: 21  IINGECSNILNWDDVRFSWAYPKYKKMLANFWTPFEINMSQDIKQF---PELRKSEQEAF 77

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
            + +G  A  +S+  +     +  ++++      ++  A +E +H+H++ Y+++SL   +
Sbjct: 78  LKIIGLLALLDSIQTD-YAGKVADYITDSSISALMIILAQQEVIHNHSYSYVLSSLVPKQ 136

Query: 143 --GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              E+F  +R  P +  +  + +          +    ++   E L    VF VV EG++
Sbjct: 137 KQDEVFEFWRTEPILAERNEFVVN--------GYKDFAENPSAENLLKSIVFDVVLEGLF 188

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA    L R  KMV  +    YI RDE +H++  + +  +I  ENP L T E  + 
Sbjct: 189 FYSGFAFFYHLARNQKMVATSTMINYINRDEQIHVDLFVKIFKEILQENPELNTNELSKF 248

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
            +     A  LEI +A + +     G+     E Y++F AN RC+Q+G E  F+ Y  NP
Sbjct: 249 VQETFKRAAELEIEWARDVIGSKTEGILLSDVEAYIKFYANIRCNQLGYERPFEGYRTNP 308

Query: 320 FPWM--SEVIDLKKEKNFFETRVTEYQQ 345
             W+   E +D   + +FFE +  +Y +
Sbjct: 309 LRWIVAYEQVD-HGKSDFFEQKSRQYTK 335


>gi|326783480|ref|YP_004324017.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19]
 gi|310004983|gb|ADO99373.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19]
          Length = 388

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 138/349 (39%), Gaps = 28/349 (8%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +     +V+  ++ M   +   V +    KY    +         W P EV +Q D + +
Sbjct: 15  VFNKT-KVDTKNQPMFFGQPLGVQRYDEYKYPVFDKLTQQQLGYFWRPEEVSLQKDRSDY 73

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           ++   L++ ++ +   NL +    +S+      +A   + S PE    +    F E +HS
Sbjct: 74  QT---LSEQQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMIHS 130

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ----- 183
            ++ YII ++  + G++F+   +  ++ ++A+   +   +    +               
Sbjct: 131 RSYTYIIKNVYSNPGDVFDTILDDENVMSRASSVTESYDSFIEHAHQYDGSTMWDLAREG 190

Query: 184 ------------EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                         L        + EG+ FY  FA   + G    M G A+    I RDE
Sbjct: 191 HQGGQWERRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDE 250

Query: 232 SLHLNFGIDVINQIKIENPHLWT---KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGL 287
           S HL    +++ +    +        +E Q     M       E A+A+     G  +GL
Sbjct: 251 SQHLVITQNILRKWSEGDDPEMKLIAQEEQSYVTEMFKRTVEEEKAWANYLFRDGSLIGL 310

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKN 334
           N      Y+++IANRR   +G++P++      NP PW    ++ K ++N
Sbjct: 311 NDRLLYNYVEWIANRRMKAVGIKPIYDIPAKNNPLPWTEHWLNSKGQQN 359


>gi|326783148|ref|YP_004323545.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2]
 gi|310005566|gb|ADO99954.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2]
          Length = 394

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 133/342 (38%), Gaps = 27/342 (7%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           V+   + M   +   + +    KY    +         W P EV +Q D + +K+   LT
Sbjct: 27  VDTKKQPMFFGQPLGMQRYDEFKYPVFDKLTTQQLGYFWRPEEVSLQKDRSDYKT---LT 83

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +++ +   NL +    +S+      +A   + S PE    +      E +HS ++ YII
Sbjct: 84  PEQKHIYTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNVWQLMEMIHSRSYTYII 143

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-----------------TGT 178
            ++  D  E+F+   + P I ++A    +    L +                     T  
Sbjct: 144 KNVYPDASEVFDTVLDDPKIMSRAESVTKAYDDLINSEHEFDSGNAWKFAAEGHPAGTYD 203

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH---L 235
           +   +  L    +   + EG+ FY  FA   + G    M G A+    I RDES H    
Sbjct: 204 RKELKRKLYRAVLNVNILEGIRFYVSFACSFAFGELKVMEGSAKIISLIARDESQHLVLT 263

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
              I        E      +E +     M   A   E A+A      G  +GLN     Q
Sbjct: 264 QQIIKKWQDGDDEEMVRIAEEEKPNVLKMFQNAVEEEKAWAQYLFKNGSMIGLNEKLLGQ 323

Query: 295 YMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVIDLKKEKN 334
           Y++F ANRR   IGL+P++  +   NP PW    ++ K ++N
Sbjct: 324 YVEFTANRRMKAIGLDPIYDISPRNNPLPWTQYWLNSKGQQN 365


>gi|229916488|ref|YP_002885134.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium
           sp. AT1b]
 gi|229467917|gb|ACQ69689.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sp. AT1b]
          Length = 346

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 145/330 (43%), Gaps = 21/330 (6%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++   +  +     + Y   +  Y    +N W+P E+ M  D+  W     LT+ E+   
Sbjct: 20  IIGGETSSIVNWNDIAYPQFYTIYKQLLSNFWIPDEISMSKDMQQW---PQLTEREQDAF 76

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
           KR +G  +  +S+     +L      S+      L   A +E VH+ ++ Y+++SL    
Sbjct: 77  KRIIGLLSILDSVQTR-YILESSMFSSDSSVHAVLAVIAQQEVVHNQSYSYVLSSLVPLA 135

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +FN+ ++   +  +  + L   +           +  + E      V  V+ EG+ 
Sbjct: 136 EQNRIFNIAKDDEMVMKRNQFILDLYEAF--------RETPNAENFAKSLVASVILEGIN 187

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQ 259
           FY+GFA   +L R  KMVG +    YI RDE  H  F   ++  +  ENP +    +F Q
Sbjct: 188 FYSGFAYFYNLARHQKMVGTSTMISYIQRDEMQHSYFISQLLRAVLTENPKIDENGQFSQ 247

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TEN 318
                + EA  LEI +    + +   GL+      Y++++AN+R   IGL  L++   E+
Sbjct: 248 FVYDTMAEAVDLEIEWCEYVL-RDLDGLDVSEMRDYVKYLANKRLRVIGLNDLYEGFDED 306

Query: 319 PFPWMSEVID---LKKEKNFFETRVTEYQQ 345
             PW+    D      + +FFE +   Y +
Sbjct: 307 VMPWIRAYSDDSLNATKSDFFEQKSRSYAK 336


>gi|319785673|ref|YP_004145148.1| ribonucleotide reductase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464185|gb|ADV25917.1| ribonucleotide reductase [Pseudoxanthomonas suwonensis 11-1]
          Length = 354

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/354 (22%), Positives = 148/354 (41%), Gaps = 19/354 (5%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
             T L  I+  E R       ++N  +  +     + Y   +  Y     N W+P EV M
Sbjct: 9   TATRLDRIRILEPRHPNRSTGIINGTTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDM 68

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           + D   +     L+  E+      +G  A+ +S     I   +  ++++P          
Sbjct: 69  KSDARQY---GELSAREKNAFDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIG 124

Query: 122 FEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            +E +H+ ++ Y++ S+    ++  +F + R  P+I  +              ++    +
Sbjct: 125 QQEVIHNESYSYVLASITDLANQNRVFEIARTHPTILRR--------NAPIMAAYDDFMR 176

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +   E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  
Sbjct: 177 EKTAETLLRALIQSSILEGINFYSGFAYFYNLVRQNRMAGTGKIISFINRDELAHTKFIS 236

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           +VI  I  ENP L T E           A  LE  +  E +  G  G++     +Y+++ 
Sbjct: 237 EVIRAIVGENPELQTDELADYVHLAFRHAIELETQWTGEVL-DGIDGIDVDEMIRYVKYR 295

Query: 300 ANRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           AN+    +G+E L+ + T+N  PW+    D   + + +FFE R   Y++     
Sbjct: 296 ANKMAGMLGIESLYTETTDNVMPWIRAYADNFTETKTDFFEMRNASYKKTNADN 349


>gi|51869996|ref|YP_073549.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate
           China]
 gi|51858204|gb|AAU10888.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate
           China]
          Length = 374

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 128/333 (38%), Gaps = 21/333 (6%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            +R+    +      P  Y WA E      N HW   E+ + DD+  WK    L D E+ 
Sbjct: 61  KRRLFEYNAS---YKPFHYPWAVELRSLHENMHWTEKEISLADDVTDWK-IGKLLDVEKK 116

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I + L  F   +  V             N E R  L   A  E  H   +  +  +LGL
Sbjct: 117 FITQILRLFTQLDVSVGQLYHNTFIPIFKNNEIRNMLCSFACREGTHQQAYALLNDTLGL 176

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            E +                  L+Y Q      F +  +      +    V  V  EG+ 
Sbjct: 177 PESDYSA--------------FLKYKQMTDKTDFMSDMRTDTIGNVAFSLVKAVYNEGVS 222

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
            +  F  +L+  R   M G+ +  ++ +RDE++H+     +   I  E P + TK+F + 
Sbjct: 223 LFAAFVMLLNFQRFGVMKGMGKVVEWSIRDENVHVEGLCKLFKTIVSEYPFILTKDFYKA 282

Query: 261 SRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
             T+  E   LE A+            L       Y+++I  RR  Q+GL       +NP
Sbjct: 283 VETLQQEVLKLETAFVDLVFIEDKLKNLKRVDVINYVKYILQRRTVQLGLSNKTDL-QNP 341

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKW 351
             W+S +I  +   NFFE RVTEY  G  E  W
Sbjct: 342 ILWVSWLISGRDVTNFFENRVTEYDVGGLEGDW 374


>gi|195953600|ref|YP_002121890.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933212|gb|ACG57912.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1]
          Length = 319

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 163/305 (53%), Gaps = 15/305 (4%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           Y      Y  A NN+W+P E  + +D   +     L D ER  +   +GFF+S+E  V  
Sbjct: 30  YPEILNLYTKAKNNYWIPEEYDLANDKHEF--YEKLNDIERHYMLHTVGFFSSAEGWVGQ 87

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
           N +L I + + N E R +L  Q  EE  H  TF+YI+  L L   E++ M+  V  I  K
Sbjct: 88  N-ILEISKRIRNTETRMFLGYQLMEEMKHIDTFRYIMDGLDLKPHEVYAMHENVKEIKRK 146

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
           A++ ++    L         +  ++  ++D+FV+Y + EG++F++GF   L+ GR   + 
Sbjct: 147 ADFEVKRAMALCE-------EPTEENLIEDIFVYYAILEGLFFFSGFVTPLAFGRRGVLK 199

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
            +A   ++I++DE+ HL FGI ++N++  +       +++ K R ++ EA  +E  YA  
Sbjct: 200 NVAALVRWILKDETRHLAFGIYLLNELLKD---KNKNDYKDKFRVLMEEAVDIETEYARV 256

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFET 338
            MP+  +GL+  +   Y++++A+RR   +G + ++   +NP  W++   DL    NFFE 
Sbjct: 257 AMPEKIIGLSFETYTSYVKYLADRRMRSLGFDAIYGQ-KNPMKWLTTQTDLPDLTNFFEA 315

Query: 339 RVTEY 343
           +V +Y
Sbjct: 316 KV-DY 319


>gi|67921622|ref|ZP_00515140.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH
           8501]
 gi|67856734|gb|EAM51975.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH
           8501]
          Length = 321

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 142/328 (43%), Gaps = 27/328 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
             ++Y WA   Y     N W+P  + +  D+  +     LTDDER      L +    +S
Sbjct: 9   NDVRYTWAVGLYQQMRENFWIPQRLDITQDVTDY---GNLTDDERYAYDGILSYLTFLDS 65

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREV 152
           +   NI   +   ++ PE    +  Q  +E +H+ ++QY+I ++   E   +++  +R  
Sbjct: 66  VQTCNIP-HLKTSITAPEISLCMAEQISQEGMHNQSYQYLIETIIPPERRTQVYEFWRTD 124

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  +  +  +  Q            DA  E      +   + EG++FY GF    +L 
Sbjct: 125 KLLRDRCEFIAKLYQKYID--------DATTENYFIALMADFLLEGLYFYNGFIYFYNLA 176

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
               M G A+ ++ I RDE  H+     +I + +   PH       ++   M   A   E
Sbjct: 177 SRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPH-----SVEQIYEMFDMAVNYE 231

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDL 329
             + +  +    +G+   S E+Y +++AN R   IGLEPL+    Y+++P+  +    D 
Sbjct: 232 CRWTNHIVGNNILGITESSTEKYTKYLANIRLRSIGLEPLYPEPKYSKSPYTHLERFSDT 291

Query: 330 KK----EKNFFETRVTEYQQGAELK-WD 352
           KK    + NFFE  VT Y   + L  WD
Sbjct: 292 KKAAHTKANFFEATVTSYVMSSGLTGWD 319


>gi|225850104|ref|YP_002730338.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella
           marina EX-H1]
 gi|225645787|gb|ACO03973.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella
           marina EX-H1]
          Length = 329

 Score =  173 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 153/309 (49%), Gaps = 6/309 (1%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y    E Y       W P E+ +Q D+  +KS   LT  E+ +   ++G+FASSE LV 
Sbjct: 23  RYPVFKEIYTKQKKAVWFPEELNIQQDVLDYKS---LTPTEKDLFDTSVGYFASSELLVQ 79

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
           N +    +  L++P  +     Q F E +HS  F+ I+ +  +D   ++N+  E   +  
Sbjct: 80  NVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNTFEMDRKRIYNITLEDKLLME 139

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K    ++    ++       T +  ++ L  + +  ++ EGM+FY+ FA   ++    KM
Sbjct: 140 KQELIIRAVDRITYGKADPDTLEGKKQILTAILLNNIIQEGMFFYSAFAHFFAMKDTGKM 199

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYA 276
             +    + I+ DESLHL  GI+ I  I  ENP +   E F +  +  + +A  LE+ Y 
Sbjct: 200 KNVVSGVELILIDESLHLQNGIEAILTIVEENPEIVDDEKFVENIKETIIDAVELELNYL 259

Query: 277 HETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                     G++    E+YM++IA+RR  ++G +P FK  +NP  ++ +  D+KK  NF
Sbjct: 260 KTKFGGTTIFGVSYKELEKYMKYIADRRLEELGFDPQFKIDQNPLKFLQKE-DVKKLTNF 318

Query: 336 FETRVTEYQ 344
           FE   TEY 
Sbjct: 319 FEVSSTEYT 327


>gi|190896512|gb|ACE96769.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896530|gb|ACE96778.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 110/244 (45%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++     S                +  V +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWIDGSES--------------CAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|58700135|ref|ZP_00374651.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58533347|gb|EAL57830.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 225

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 11/234 (4%)

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
             L   +  E +H   + Y++ ++G+ E E +  + +  ++  K  + L++ ++      
Sbjct: 1   MMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDAMRKKYEYMLEFEES------ 53

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
               K   +   + L VF    EG+  +  FA +L+  R  KM G+ +   +  RDE+LH
Sbjct: 54  ---KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRFGKMKGMGQIIAWSARDETLH 110

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
            N  I + N    EN  +W  EF+++  +       LE  +       G   GL+A    
Sbjct: 111 TNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELEDEFIKLAFDLGDVEGLSAEEVR 170

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
            Y++++ANRR  Q+GLE ++   +NP PW+ E+++  +  NFFE RVTEY + A
Sbjct: 171 NYIRYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEHTNFFENRVTEYSRAA 224


>gi|172054963|ref|YP_001806290.1| ribonucleoside-diphosphate reductase subunit beta [Cyanothece sp.
           ATCC 51142]
 gi|171701244|gb|ACB54224.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp.
           ATCC 51142]
          Length = 347

 Score =  172 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 82/349 (23%), Positives = 150/349 (42%), Gaps = 23/349 (6%)

Query: 8   SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           SPI     + N + + +    + +V  L   +YGWA   Y +    +W+P    +  D  
Sbjct: 9   SPIFNPTGKDNKEKRHLWGGDTTNVINLNETRYGWARTIYQTMREGYWIPQRTDLSQDKL 68

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L   ER  +K  L +    +S+   NI   + R+++ PE R  L  Q  +EA+
Sbjct: 69  DY---VNLIPGERRALKGILSYLNFLDSVQVANIPE-LSRYITAPEARMCLAEQTSQEAM 124

Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H  T+QYI  S+  +  + E+++ +++   +  +  +   Y QTL+         +   E
Sbjct: 125 HGETYQYITESIIPENEQHEVYDFWKKDLLLNERCEFIASYYQTLAD--------NPCGE 176

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 +   + EG+ FY GF    +L  + ++ G A+  + I  DE  H++    +I +
Sbjct: 177 TYFMALIGDYLLEGLLFYQGFLFFYNLASSQRLAGCAKLIKQINMDELTHVSLYQKLITE 236

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
            K +  +      + +   +       EI + +       +G++  S E Y +++AN R 
Sbjct: 237 AKTKFSY-----SEDEITELFVNTVEKEIEWTNHIFDGQILGVSEASTEAYTKYLANLRL 291

Query: 305 HQIGLEPLFKYTENP---FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             IG+  ++   ENP     W       K +  FFET VT Y Q   +K
Sbjct: 292 KAIGISAIYPEVENPYAHLDWADFKGIGKSKAAFFETEVTGYAQPTAVK 340


>gi|326782198|ref|YP_004322599.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1]
 gi|310004405|gb|ADO98798.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1]
          Length = 395

 Score =  172 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 131/342 (38%), Gaps = 27/342 (7%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           V+   + M   +   + +    KY    +         W P EV +Q D + +K+   LT
Sbjct: 28  VDTKKQPMFFGQPLGMQRYDEFKYPVFDKLTTQQLGYFWRPEEVSLQKDRSDYKT---LT 84

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +++ +   NL +    +S+      +A   + S PE    +      E +HS ++ YII
Sbjct: 85  PEQKHIYTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNVWQLMEMIHSRSYTYII 144

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-----------------TGT 178
            ++  D  E+F+   +   I ++A         L +                     T  
Sbjct: 145 KNVYPDASEVFDTVLDDDKIMSRAESVTAAYDELINAEHEFDSGNAWKFAAEGHPAGTYD 204

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH---L 235
           +   +  L    +   + EG+ FY  FA   + G    M G A+    I RDES H    
Sbjct: 205 RKELKRKLYRAVLNVNILEGIRFYVSFACSFAFGELKVMEGSAKIISLIARDESQHLVLT 264

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
              I        E      +E +     M   A   E A+A      G  +GLN     Q
Sbjct: 265 QQIIKKWQDGDDEEMVRIAEEEKSNVLKMFKNAVEEEKAWASYLFKNGSMIGLNEKLLGQ 324

Query: 295 YMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVIDLKKEKN 334
           Y++F ANRR   IGL+P++  +   NP PW    ++ K ++N
Sbjct: 325 YVEFTANRRMKAIGLDPIYDISPRNNPLPWTQYWLNSKGQQN 366


>gi|289664735|ref|ZP_06486316.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 349

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/353 (22%), Positives = 146/353 (41%), Gaps = 19/353 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 5   ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 64

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 65  GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 120

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           +D
Sbjct: 121 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRD 172

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 173 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 232

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   E           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 233 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 291

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++     
Sbjct: 292 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 344


>gi|209972895|ref|YP_002300342.1| gp4 [Bacillus phage SPO1]
 gi|209871215|gb|ACI90971.1| gp4 [Bacillus phage SPO1]
          Length = 346

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/346 (23%), Positives = 149/346 (43%), Gaps = 20/346 (5%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           L  I+    R       ++  + S +     ++Y   +  Y    +N W+P  + + +D+
Sbjct: 4   LKEIKLMTPRYPNRGTDIIGGKMSGIMNWNDIRYPQMYTIYKQIRSNFWIPQRISLVEDV 63

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             +     L    +      +G  ++ +S+    +VL   R LS P  +      A +EA
Sbjct: 64  RQF---PNLPKRTQEAYLDVIGQLSTLDSIQTR-LVLEFGRFLSEPTYQPIAANIAQQEA 119

Query: 126 VHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
            H  ++ Y+++S+  D   + E+F+  +    +  + +   +Y Q            +  
Sbjct: 120 THEESYSYVLSSVVPDTNKQNEVFDKAKTNEDVLKRNDRVYKYYQEFVD--------NPT 171

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
            +      V  VV EG++FY+ F    +L R + MVG +    YI RDE  H  F   V+
Sbjct: 172 PQTFFRALVACVVLEGIYFYSAFTFFYNLARNHLMVGTSTMINYIQRDEVAHAYFFSQVL 231

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
             +  E P L T+E       M+ EA  LEI Y+ + +     GL+    E Y++ + NR
Sbjct: 232 RYLMAERPELHTEENVNFIYDMMQEAADLEIEYSQKIL-HDIPGLDLEELEGYIKSLCNR 290

Query: 303 RCHQIGLEPLFKYTENPFPWM---SEVIDLKKEKNFFETRVTEYQQ 345
           R   +GL+ ++   EN  PWM    +  + + + + FE +   Y++
Sbjct: 291 RLRGVGLDDIYAGVENSMPWMIAFDDGSNNQTKSDMFEQKSRNYKK 336


>gi|190896528|gb|ACE96777.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   + +HS  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIDNIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++              D  + F + L   +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|325919223|ref|ZP_08181270.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325923021|ref|ZP_08184721.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325546491|gb|EGD17645.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
           19865]
 gi|325550297|gb|EGD21104.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
           19865]
          Length = 347

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 145/353 (41%), Gaps = 19/353 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLERIKILEPRHPNRSTAIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +               +D
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFELARTHPTIIKRNAPIMGAYDDFL--------RD 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   +           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++     
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342


>gi|190896524|gb|ACE96775.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896534|gb|ACE96780.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++              D  + F + L   +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|285016983|ref|YP_003374694.1| ribonucleotide-diphosphate reductase beta subunit protein
           [Xanthomonas albilineans GPE PC73]
 gi|283472201|emb|CBA14708.1| probable ribonucleotide-diphosphate reductase beta subunit protein
           [Xanthomonas albilineans]
          Length = 346

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 77/333 (23%), Positives = 142/333 (42%), Gaps = 19/333 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N  +  +     + Y   +  Y     N W+P EV M+ D   +     L+  E+   
Sbjct: 22  IINGTTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKGDAKQY---GELSAREKNAY 78

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
              +G  A+ +S     I   +  ++++P           +E +H+ ++ Y++ S+    
Sbjct: 79  DSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASIAGLA 137

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           D+  +F + R  P+I A+    +Q              ++   E L    +   + EG+ 
Sbjct: 138 DQNRVFEIARTHPTIVARNQPIMQAYDDF--------MREKTAETLLRSLIQSSILEGIN 189

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R N+M G  +   +I RDE  H  F  ++I  I  EN  L T E    
Sbjct: 190 FYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISELIRAIIGENAELQTNELTDY 249

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
                  A  LE  ++ E +  G  G++     QY+++ AN+    +G+E L+   ++N 
Sbjct: 250 VHQAFEHAIRLETEWSSEVL-DGIEGIDVDEMIQYVKYRANKMSGMLGIEKLYTGASDNV 308

Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
            PW+    D   + + +FFE R   Y++     
Sbjct: 309 MPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 341


>gi|325914792|ref|ZP_08177129.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538985|gb|EGD10644.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 349

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 146/353 (41%), Gaps = 19/353 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 5   ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 64

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 65  GDARQYNE---LSSREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 120

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           +D
Sbjct: 121 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRD 172

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 173 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 232

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   +           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 233 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 291

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++     
Sbjct: 292 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 344


>gi|66770372|ref|YP_245134.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|188993572|ref|YP_001905582.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. campestris str. B100]
 gi|66575704|gb|AAY51114.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|167735332|emb|CAP53546.1| Ribonucleoside-diphosphate reductase beta chain [Xanthomonas
           campestris pv. campestris]
          Length = 347

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 144/353 (40%), Gaps = 19/353 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N  +  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLERIKILEPRHPNRSTAIINGSTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +               +D
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYDDF--------MRD 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   +           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++     
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342


>gi|94499220|ref|ZP_01305758.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp.
           RED65]
 gi|94428852|gb|EAT13824.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp.
           RED65]
          Length = 376

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/332 (21%), Positives = 138/332 (41%), Gaps = 25/332 (7%)

Query: 18  NVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   + M      +V++    KY    +      +  W P EV +  D   +     L +
Sbjct: 12  DAFSQPMFFGENVNVSRYDTQKYKIFEQLIEKQLSFFWRPEEVDLSTDRKDF---AALPE 68

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +II 
Sbjct: 69  HEKHIFLSNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIR 128

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-PSFTTGTKDADQEFLQDLFVFYV- 194
           ++  D  ++F+       IT +A    +Y   L    ++     + D E   +     + 
Sbjct: 129 NVISDPSKVFDDIVSNEYITKRAESVTKYYDDLIEGVTYYQNLGEGDHEINGETIHVSLR 188

Query: 195 --------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
                         V E + FY  FA   +     KM G A+  + I RDE+LHL     
Sbjct: 189 DLKRKLYLTMASVNVLEAIRFYVSFACSFAFAERTKMEGNAKIIKLIARDEALHLTGTQH 248

Query: 241 VINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
           ++       ++P +     E +++   +  EA   E  +A      G  +GLN     QY
Sbjct: 249 MMQIWALGKDDPEMGEIANECKKQVIEIFREAAQQEKDWAEYLFKDGSMIGLNKDILCQY 308

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           +++I N+R   IGL+ +F+  +NP PW++  +
Sbjct: 309 VEYITNQRLGAIGLDNIFETRQNPIPWINAWL 340


>gi|157325080|ref|YP_001468505.1| gp125 [Listeria phage A511]
 gi|66732769|gb|AAY53360.1| gp57 [Listeria phage P100]
 gi|66733088|gb|AAY52906.1| gp125 [Listeria phage A511]
          Length = 343

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/328 (24%), Positives = 149/328 (45%), Gaps = 19/328 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N  +  +     ++Y   +  Y     N+W+P EV M+ D   +     L+++E+   
Sbjct: 19  IINGEASGIVNWNDIRYPSFYRAYKELTTNYWLPDEVDMKSDAKQYNH---LSEEEKYAF 75

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
              +G  A+ +S     I   I  ++S+          A +EA+H+ ++ Y++ S+    
Sbjct: 76  DSIIGLLATLDSPQTRFIY-NIAEYVSDASVHAITAIIAQQEAIHNESYSYVLASITNLQ 134

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F   R  P+I  +    ++      +        +   E +    V   + EG+ 
Sbjct: 135 EQNRVFEEARTHPTIIKRNAPIMKSYDDFMN--------NKTPENMVKALVQSSILEGIN 186

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R NKM G  +   +I RDE  H  F  ++I  I  ENP L T E    
Sbjct: 187 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISELIRAIVGENPELQTDELNDY 246

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
                  A  LE A++ E + +G  G++      Y+++ AN+    +GL+P++  +TEN 
Sbjct: 247 VYASFRHAVELEQAWSSEVL-QGIEGIDVEEMLDYVKYRANKMLGMLGLQPMYQGHTENS 305

Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
             W+    D   + + +FFE R + Y++
Sbjct: 306 MTWIKAYADNFTETKTDFFEMRNSSYKK 333


>gi|21233407|ref|NP_639324.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|21115247|gb|AAM43206.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 347

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 145/353 (41%), Gaps = 19/353 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLERIKILEPRHPNRSTAIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +               +D
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYDDF--------MRD 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   +           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++     
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342


>gi|255928974|ref|YP_003097286.1| ribonucleotide reductase B subunit [Synechococcus phage S-RSM4]
 gi|255705260|emb|CAR63249.1| ribonucleotide reductase B subunit [Synechococcus phage S-RSM4]
          Length = 394

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/353 (20%), Positives = 132/353 (37%), Gaps = 27/353 (7%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
           +   G++ +    +  +   K        V +    KY    +         W P EV +
Sbjct: 14  SKVEGMT-VFNTTQLDSTKQKMFFGPPLGVQRYDKFKYPVFDKLTQQQLGYFWRPEEVSL 72

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           Q D A ++    L D ++ +   NL +    +S+      +A   + S PE    +    
Sbjct: 73  QKDRADYQV---LNDAQKHIFTSNLKYQILLDSVQGRGPGMAFMPYCSLPELEGAMNIWQ 129

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK---------------ANW--ALQ 164
             E VHS ++ +II ++  D  ++F+   +   I ++                 W    Q
Sbjct: 130 TMEMVHSRSYTHIIKNVYADPSDVFDKILDDEKILSRAKSVTHAYDEFLRAAQEWGAGKQ 189

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
           +   L          +  +  L        + EG+ FY  FA   + G    + G A+  
Sbjct: 190 WEHALEGVDNAIWELNDLKRKLYRAVANVYILEGIRFYVSFACSFAFGELKLLEGSAKII 249

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTK---EFQQKSRTMLHEATLLEIAYAHETMP 281
             I RDES H+    +++N+ K  +     +   E ++    M  +    E  +A     
Sbjct: 250 GLIARDESQHMTITQNILNKWKEGDDPEMVQIAKEEEENVYDMFRQCVEEEKLWAEYLFK 309

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKK 331
            G  +GLN     +Y+++ ANRR   IGL+ +F    + NP PW    +  K 
Sbjct: 310 DGSIIGLNDKLLSKYVEWTANRRLKSIGLKAIFDTPVSNNPLPWTEHWLSSKG 362


>gi|190896572|gb|ACE96799.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896574|gb|ACE96800.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896576|gb|ACE96801.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896578|gb|ACE96802.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
              + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++              D  + F + L   +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EEQVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|89092731|ref|ZP_01165684.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum
           sp. MED92]
 gi|89083243|gb|EAR62462.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum
           sp. MED92]
          Length = 376

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/333 (22%), Positives = 133/333 (39%), Gaps = 27/333 (8%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   + M   RS +V +    KY    +      +  W P EV +  D   +     + +
Sbjct: 12  DATKEPMFFGRSVNVARYDKQKYPIFEKLIEKQLSFFWRPEEVDLSTDRKDF---MNMPE 68

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +A    +S PE   +    AF E +HS ++ +II 
Sbjct: 69  HEKHIFLSNLKYQTLLDSVQGRSPNIAFLPVVSLPELETWFETWAFSETIHSRSYTHIIR 128

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FTTGTK 179
           ++  +  E+F+     P I  +A+   +      + S                 + T  +
Sbjct: 129 NIITEPSEVFDQIVTNPEIIRRADSVTRLYDEFINLSSVHSIHGEGLHTVDGKVYDTSMR 188

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LHL    
Sbjct: 189 NLKKKLYLTLVSINVL-EAIRFYVSFACSFAFAERAIMEGNAKIIKLIARDEALHLTGTQ 247

Query: 240 DVINQI----KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQ 294
            ++N +       +     KE +Q    +  EA   E  +A         +GLNA     
Sbjct: 248 HMLNIMASGADDPDYKDIAKECEQDVYNIFKEAAQQEKDWAQYLFREGSMIGLNAQILSD 307

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           Y+++I N R   + LE +F   +NP PWM+  +
Sbjct: 308 YVEYITNVRMKALNLEEIFPARQNPLPWMNAWL 340


>gi|156847976|ref|XP_001646871.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117552|gb|EDO19013.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 351

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/332 (19%), Positives = 131/332 (39%), Gaps = 27/332 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L        L P+KY   ++ Y       W   E+    D+  W   + +T DE+
Sbjct: 24  KDESILTENKRRFVLFPIKYHEIYDAYKKREALFWTAEELDFSKDIQNWND-DKITKDEK 82

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
               R L  FA S  +   N+   +      PE + +   Q   + +H   +  +I SL 
Sbjct: 83  EYFIRLLALFA-SNDMDRENLTEHLSAECQTPEAKCFYGFQIMVDNIHQEVYGILIDSLV 141

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D+ +   +F   +++ +I  K  +A  + +            + D  F + L     V 
Sbjct: 142 KDDEKRTSMFEEIKDLTNIKEKIEYAKSWFE------------NEDNLFGEKLIAEAAVL 189

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
            G++  + +  +LS  +   + G       ++RD  LH++F   +   +K +        
Sbjct: 190 -GIFSLSAYVSVLSFQKGGLIPGFVTGVDNMLRDRGLHVDFCCLMYAHLKNQIDS----- 243

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
             +  + ++ +A  +E     + +P   V L      Q+++++A+      G E  +  T
Sbjct: 244 --EIVQKIIVDAVEIEKKSLLKALPIIKVNLKIDEMNQFIEYVADSILVAFGNEKHYNAT 301

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
            NP+ +M  V+ L    N     + + Q+ +E
Sbjct: 302 -NPYEFMENVV-LPGNTNSLAKTIADAQKASE 331


>gi|188578920|ref|YP_001915849.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188523372|gb|ACD61317.1| ribonucleoside-diphosphate reductase, beta subunit [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 347

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/353 (22%), Positives = 146/353 (41%), Gaps = 19/353 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       +LN ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLERIKILEPRHPNRSTSILNGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRE 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   E           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++     
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342


>gi|315304277|ref|ZP_07874626.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           ivanovii FSL F6-596]
 gi|313627356|gb|EFR96140.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           ivanovii FSL F6-596]
          Length = 349

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 147/328 (44%), Gaps = 19/328 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N  +  +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+   
Sbjct: 25  IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
              +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    
Sbjct: 82  DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F + R  P+I  +    ++      +        +   E L    +   + EG+ 
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMEAYDEFMN--------NKTGETLVKALIQSSILEGIN 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T E  + 
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVEY 252

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
           +      A  LE  ++ E M +G  G++      Y+++ AN+    +G+  L+  ++EN 
Sbjct: 253 THEAFRHAVELETEWSEEVM-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSENT 311

Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
             W+    D   + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339


>gi|289435502|ref|YP_003465374.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289171746|emb|CBH28292.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313632343|gb|EFR99385.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           seeligeri FSL N1-067]
 gi|313636848|gb|EFS02469.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           seeligeri FSL S4-171]
          Length = 349

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 147/328 (44%), Gaps = 19/328 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N  +  +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+   
Sbjct: 25  IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
              +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    
Sbjct: 82  DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F + R  P+I  +    +       +        +   E L    +   + EG+ 
Sbjct: 141 EQKRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGIN 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + 
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEY 252

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
           +      A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N 
Sbjct: 253 THEAFRHAVDLETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311

Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
             W+    D   + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339


>gi|58580098|ref|YP_199114.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|84622097|ref|YP_449469.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|58424692|gb|AAW73729.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|84366037|dbj|BAE67195.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
          Length = 347

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 146/353 (41%), Gaps = 19/353 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRE 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   E           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++     
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342


>gi|289670858|ref|ZP_06491933.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 349

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/353 (21%), Positives = 146/353 (41%), Gaps = 19/353 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 5   ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 64

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 65  GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 120

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           ++
Sbjct: 121 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRE 172

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 173 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 232

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   +           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 233 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 291

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++     
Sbjct: 292 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 344


>gi|315283233|ref|ZP_07871471.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           marthii FSL S4-120]
 gi|313613124|gb|EFR87028.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           marthii FSL S4-120]
          Length = 349

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 147/328 (44%), Gaps = 19/328 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N  +  +     + Y   +  Y     N+W+P EV M+ D   +     L+++E+   
Sbjct: 25  IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PNLSEEEKYAF 81

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
              +G  A+ +S     I   I  ++++P           +E +H+ ++ Y++ S+    
Sbjct: 82  DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIGQQEVIHNESYSYVLASITNLQ 140

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F + R  P+I  +    ++      +        +   E L    +   + EG+ 
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMEAYDDFMN--------NKTGETLVKALIQSSILEGIN 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T E  + 
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVEY 252

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
           +      A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N 
Sbjct: 253 THEAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311

Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
             W+    D   + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339


>gi|254523600|ref|ZP_05135655.1| ribonucleoside-diphosphate reductase, beta subunit
           [Stenotrophomonas sp. SKA14]
 gi|219721191|gb|EED39716.1| ribonucleoside-diphosphate reductase, beta subunit
           [Stenotrophomonas sp. SKA14]
          Length = 346

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 80/353 (22%), Positives = 148/353 (41%), Gaps = 19/353 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N R+  +     + Y   +  Y     N W+P EV M+
Sbjct: 2   ATPLDRIKILEPRHPNRSTGIINGRTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 61

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 62  ADARQY---GELSGREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 117

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    ++  +F + R  P+I  +    +               ++
Sbjct: 118 QEVIHNESYSYVLASITDLPNQNRVFELARTHPTIIKRNAPIMGAYDDF--------MRE 169

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   ++ R N+M G  +   +I RDE  H  F  +
Sbjct: 170 KTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQNRMTGTGKIISFINRDELAHTKFISE 229

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  ENP L T E           A  LE  ++ E +  G  G++     +Y+++ A
Sbjct: 230 LIRAIIGENPELQTNELTAYVHQAFEHAIELETQWSSEVL-DGIDGIDVEEMTRYVKYRA 288

Query: 301 NRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           N+    +G+E L+   T+N  PW+    D   + + +FFE R   Y++     
Sbjct: 289 NKMAGMLGIERLYSDTTDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNVDN 341


>gi|46908387|ref|YP_014776.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47091823|ref|ZP_00229618.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes str. 4b H7858]
 gi|226224761|ref|YP_002758868.1| ribonucleoside-diphosphate reductase, subunit beta [Listeria
           monocytogenes Clip81459]
 gi|254825283|ref|ZP_05230284.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL J1-194]
 gi|254853280|ref|ZP_05242628.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL R2-503]
 gi|254931734|ref|ZP_05265093.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes HPB2262]
 gi|255519998|ref|ZP_05387235.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL J1-175]
 gi|300764038|ref|ZP_07074034.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes FSL N1-017]
 gi|46881658|gb|AAT04953.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47019834|gb|EAL10572.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes str. 4b H7858]
 gi|225877223|emb|CAS05937.1| Putative ribonucleoside-diphosphate reductase, subunit beta
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258606640|gb|EEW19248.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL R2-503]
 gi|293583289|gb|EFF95321.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes HPB2262]
 gi|293594529|gb|EFG02290.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL J1-194]
 gi|300515379|gb|EFK42430.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes FSL N1-017]
 gi|313617790|gb|EFR90013.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           innocua FSL S4-378]
 gi|328465961|gb|EGF37142.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 1816]
 gi|328472177|gb|EGF43048.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 220]
 gi|332312605|gb|EGJ25700.1| Ribonucleoside-diphosphate reductase [Listeria monocytogenes str.
           Scott A]
          Length = 349

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 147/328 (44%), Gaps = 19/328 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N  +  +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+   
Sbjct: 25  IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
              +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    
Sbjct: 82  DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F + R  P+I  +    +       +        +   E L    +   + EG+ 
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGIN 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + 
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEY 252

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
           +      A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N 
Sbjct: 253 THDAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311

Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
             W+    D   + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339


>gi|190896570|gb|ACE96798.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896582|gb|ACE96804.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
              + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++              D  + F + L   +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EEQVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNAA-NPFDWM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|190896544|gb|ACE96785.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++              D  + F + L   +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|16804193|ref|NP_465678.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes EGD-e]
 gi|116873587|ref|YP_850368.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|217963685|ref|YP_002349363.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes HCC23]
 gi|224500181|ref|ZP_03668530.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes Finland 1988]
 gi|224501047|ref|ZP_03669354.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL R2-561]
 gi|254826956|ref|ZP_05231643.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL N3-165]
 gi|254831409|ref|ZP_05236064.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 10403S]
 gi|255028522|ref|ZP_05300473.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes LO28]
 gi|284802601|ref|YP_003414466.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 08-5578]
 gi|284995743|ref|YP_003417511.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 08-5923]
 gi|290893101|ref|ZP_06556089.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL J2-071]
 gi|16411624|emb|CAD00232.1| lmo2154 [Listeria monocytogenes EGD-e]
 gi|116742465|emb|CAK21589.1| ribonucleoside-diphosphate reductase beta chain [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|217332955|gb|ACK38749.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes HCC23]
 gi|258599337|gb|EEW12662.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL N3-165]
 gi|284058163|gb|ADB69104.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 08-5578]
 gi|284061210|gb|ADB72149.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes 08-5923]
 gi|290557263|gb|EFD90789.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes FSL J2-071]
 gi|307571740|emb|CAR84919.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes L99]
          Length = 349

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 147/328 (44%), Gaps = 19/328 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N  +  +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+   
Sbjct: 25  IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
              +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    
Sbjct: 82  DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F + R  P+I  +    +       +        +   E L    +   + EG+ 
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGIN 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + 
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEY 252

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
           +      A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N 
Sbjct: 253 THEAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311

Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
             W+    D   + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339


>gi|47095728|ref|ZP_00233334.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes str. 1/2a F6854]
 gi|254899145|ref|ZP_05259069.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes J0161]
 gi|254912714|ref|ZP_05262726.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818]
 gi|254937041|ref|ZP_05268738.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes F6900]
 gi|47015871|gb|EAL06798.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258609644|gb|EEW22252.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
           NrdB [Listeria monocytogenes F6900]
 gi|293590709|gb|EFF99043.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818]
          Length = 349

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 148/328 (45%), Gaps = 19/328 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N  +  +     + Y   +  Y     N+W+P EV M+ D   + +   L++ E+   
Sbjct: 25  IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQYPT---LSEQEKYAF 81

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
              +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    
Sbjct: 82  DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F + R  P+I  +    +       +        +   E L    +   + EG+ 
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGIN 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + 
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEY 252

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
           +      A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N 
Sbjct: 253 THEAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311

Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
             W+    D   + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339


>gi|313622843|gb|EFR93161.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           innocua FSL J1-023]
          Length = 349

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 147/328 (44%), Gaps = 19/328 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N  +  +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+   
Sbjct: 25  IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
              +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    
Sbjct: 82  DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F + R  P+I  +    +       +        +   E L    +   + EG+ 
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMTAYDDFMN--------NKTGETLVKALIQSSILEGIN 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + 
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEY 252

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
           +      A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N 
Sbjct: 253 THDAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311

Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
             W+    D   + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339


>gi|166710317|ref|ZP_02241524.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 347

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 146/353 (41%), Gaps = 19/353 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLDRIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRE 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   E           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAINLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++     
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342


>gi|190896536|gb|ACE96781.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896560|gb|ACE96793.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896566|gb|ACE96796.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++              D  + F + L   +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|190896568|gb|ACE96797.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896580|gb|ACE96803.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
              + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++              D  + F + L   +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EEQVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNAA-NPFDWM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|78049716|ref|YP_365891.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78038146|emb|CAJ25891.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 347

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 146/353 (41%), Gaps = 19/353 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLDRIKILEPRNPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRE 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   E           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++     
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342


>gi|16801322|ref|NP_471590.1| ribonucleotide-diphosphate reductase subunit beta [Listeria innocua
           Clip11262]
 gi|16414770|emb|CAC97486.1| lin2258 [Listeria innocua Clip11262]
          Length = 349

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 147/328 (44%), Gaps = 19/328 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N  +  +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+   
Sbjct: 25  IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
              +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    
Sbjct: 82  DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F + R  P+I  +    +       +        +   E L    +   + EG+ 
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMAAYDDFMN--------NKTGETLVKALIQSSILEGIN 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + 
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEY 252

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
           +      A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N 
Sbjct: 253 THDAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311

Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
             W+    D   + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339


>gi|239993885|ref|ZP_04714409.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas
           macleodii ATCC 27126]
          Length = 376

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 73/332 (21%), Positives = 132/332 (39%), Gaps = 25/332 (7%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M      +V +    K+    +      +  W P EV +  D   ++    LTD E+ 
Sbjct: 16  EPMFFGNPVNVARYDQQKHAIFEKLIEKQISFFWRPEEVDVSRDRVDFQ---KLTDPEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ +I+ +L  
Sbjct: 73  IFISNLKYQTLLDSVQGRSPNIAFLPIISLPELETWVETWSFFETIHSRSYTHILRNLFS 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTTGTKDADQE 184
           D  E+F        I  +A    +Y   L                 +    T      ++
Sbjct: 133 DPSEIFEDIVVNDEIKRRAADISKYYDDLIFATQLWQTQGEGVHTVNGVAHTINMYELKK 192

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L          E + FY  FA   +      M G ++  + I RDE+LHL+    ++N 
Sbjct: 193 KLYLCMNSVNALEAIRFYVSFACTFAFAERKLMEGNSKIIRLIARDENLHLSSTQHILNL 252

Query: 245 IKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
                         +E ++++R +   A   E  +A      G  +GLN     QY+++I
Sbjct: 253 WAKGKDDPEMAQIAEECKEEARAIFMNAVEQEKQWADYLFQNGSMIGLNKEILCQYVEYI 312

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           AN+R   IGL+  F+ + NP PWM+  ++   
Sbjct: 313 ANQRMSAIGLDTPFEISSNPLPWMNNYLNSDN 344


>gi|21244791|ref|NP_644373.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|325927516|ref|ZP_08188754.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans
           91-118]
 gi|21110489|gb|AAM38909.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|325542109|gb|EGD13613.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans
           91-118]
          Length = 347

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 146/353 (41%), Gaps = 19/353 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLDRIKILEPRNPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRE 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   E           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++     
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342


>gi|319954718|ref|YP_004165985.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237]
 gi|319423378|gb|ADV50487.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237]
          Length = 424

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 69/338 (20%), Positives = 141/338 (41%), Gaps = 18/338 (5%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R     KR  N       L P +Y   +E   +  +++W+ +E     D+  +K++  LT
Sbjct: 92  RNEQSQKRKSNIFEKRINLKPYEYPELYEYVPAIRHSYWIHSEFNFTSDIQDFKTR--LT 149

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           D E+  IK  +   +  E          IY  +  PE        A  E  H+  + +++
Sbjct: 150 DTEQSAIKNTMLAISQIEV-AVKGFWGDIYHKMPKPEIGSVGATFAESEVRHADAYSHLL 208

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             LGL+    F   ++ P+I  +  +           +      + ++++ + + +F + 
Sbjct: 209 EILGLNNE--FKNLKKKPAIMKRVQY--------LETALKNAKSEDNKDYAESILLFSLF 258

Query: 196 FEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
            E +  ++ F  I++  +  N + G++   +   ++E +H +FGID+I  IK ENP  + 
Sbjct: 259 IEHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEEQIHGDFGIDIIKIIKKENPDWFD 318

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLF 313
            ++ +  + M  +A + E +       KG +  L      ++++   N     IG+E +F
Sbjct: 319 ADYHKTIQQMCKDAFIAESSVVDWIFEKGELDFLPKDVVNEFIKNRFNNSLESIGIEKIF 378

Query: 314 KYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +  E       W  + I   K  +FF  R   Y +  +
Sbjct: 379 EVNEELIAETEWFDDEIIGTKHGDFFVKRSINYSKRTQ 416


>gi|299822182|ref|ZP_07054068.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi
           DSM 20601]
 gi|299815711|gb|EFI82949.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi
           DSM 20601]
          Length = 349

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 144/328 (43%), Gaps = 19/328 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N  +  +     + Y   +  Y     N+W+P EV M+ D   +     L+++ER   
Sbjct: 25  IINGVTSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKGDAKQY---PELSEEERYAY 81

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
              +G  A+ +S     I   +  ++++P         A +E +H+ ++ Y++ S+    
Sbjct: 82  DAIIGLLATLDSPQTRFIY-NVAEYVTDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F + R  P+I  +    +               +    E L    +   + EG+ 
Sbjct: 141 NQNRIFELARTHPTIIKRNQPIMDAYDDFL--------EHKTGETLVKSLIQSSILEGIN 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T E    
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVAY 252

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
           +      A  LE  ++ E M  G  G++      Y+++ AN+    +G+  L+  ++EN 
Sbjct: 253 THDAFRHAVELETIWSEEVME-GIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSENT 311

Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
             W+    D   + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339


>gi|315930891|gb|EFV09876.1| ribonucleotide reductase, small chain family protein [Campylobacter
           jejuni subsp. jejuni 305]
          Length = 305

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 79/314 (25%), Positives = 139/314 (44%), Gaps = 12/314 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
              I        + D+++ +     +      KY WA + +     N W P EV    D 
Sbjct: 3   RKRIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDA 62

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             ++    LT  E+ M         S +S   NN+   I  +++ PE    L RQA+EEA
Sbjct: 63  LDYRC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
            HS ++  ++ ++  +   ++ M +   ++  K ++     + L+         D D   
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNK 172

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           L    V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
           + E P L+  E   K   M  +A  LEI +         +G      E+Y+ ++ ++R  
Sbjct: 233 RKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLS 292

Query: 306 QIGLEPLFKYTENP 319
            I L+ L+   ++P
Sbjct: 293 AINLDKLYN-AKHP 305


>gi|58532963|ref|YP_195186.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2]
 gi|58331430|emb|CAF34216.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2]
          Length = 394

 Score =  169 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 75/342 (21%), Positives = 132/342 (38%), Gaps = 27/342 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + +VN   + M       V +    KY    +         W P EV +Q D A ++   
Sbjct: 24  KNKVNTTKQPMFFGAPLGVQRYDNFKYPVFDKLTQQQLGYFWRPEEVSLQKDRADYQQ-- 81

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L  +++ +   NL +    +S+      +A   + S PE    +      E VHS ++ 
Sbjct: 82  -LRPEQKHIFTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNIWQTMEMVHSRSYT 140

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE-------- 184
           +II ++  D  ++F+       I  +A    +        +   G  ++ +         
Sbjct: 141 HIIKNIYPDPSDVFDQIISDEKILERATSVTKAYDEFLQAAQEWGAGNSWEHALEEVDSA 200

Query: 185 ---------FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
                     L        + EG+ FY  FA   + G    M G A+    I RDES H+
Sbjct: 201 KWELKELKRKLYRAVANVYILEGIRFYVSFACSFAFGENKLMEGNAKIISLIARDESQHM 260

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKS---RTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++IN+ K  +     +  +Q+      M  +    EI +A      G  +GLNA  
Sbjct: 261 TITQNIINKWKAGDDPDMVEIAKQEENNVYDMFKKCVEEEIIWADYLFRDGSMIGLNAKL 320

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKK 331
            ++Y+++ ANRR   IG++ +F    + NP PW    +  K 
Sbjct: 321 LQKYVEWTANRRMKAIGMKQIFDVPLSNNPLPWTEHWLSSKG 362


>gi|261599112|ref|YP_003257364.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
 gi|261497769|gb|ACX84218.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
          Length = 357

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 133/327 (40%), Gaps = 18/327 (5%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
            D     P +Y WA+E +    N HW+ TE+ MQ D+  W     LTD E+ +I   L  
Sbjct: 5   EDRLNFKPFEYQWAYEYWFKQQNAHWLHTEINMQSDIYDWNK--NLTDQEKNVIGDILKG 62

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
           FA +E+ V N     I +    PE +         E +H+  + Y+   LGLD    F  
Sbjct: 63  FAQTETEVGNYWSEMIPKWFPIPEIKMMGQAFGSFETIHAAAYSYLNDILGLDNFHAFLE 122

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
              + +             +L     +   K   +E  + + +F    EG+  ++ FA +
Sbjct: 123 DDVIMNKLK----------SLMDVRNSDHGKYNKEEIARSVALFSAAAEGVQLFSSFAVL 172

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           LS  ++N++ G+ +Q  + +RDESLH   G  +      EN     +  ++     +  A
Sbjct: 173 LSFRKSNRLKGVGQQIIFSVRDESLHSEAGCKIFRTFCEENKG-LKEIVERSVYHGVDLA 231

Query: 269 TLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              E  +  +    +    +     + +M+  AN +  ++G    +       +   W  
Sbjct: 232 LKNEFVFIDKIFGGRDLCTIKREELKNFMKDRANMKLRELGFFDSYHVDRRMLDNMNWFY 291

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKW 351
             I  +++ +FF+ R T Y +  E  W
Sbjct: 292 ITISGEQQTDFFDNRETGYSKPNE-DW 317


>gi|332141553|ref|YP_004427291.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551575|gb|AEA98293.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 376

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 73/332 (21%), Positives = 132/332 (39%), Gaps = 25/332 (7%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M      +V +    K+    +      +  W P EV +  D   ++    LTD E+ 
Sbjct: 16  EPMFFGNPVNVARYDQQKHAIFEKLIEKQISFFWRPEEVDVSRDRVDFQ---KLTDPEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ +I+ +L  
Sbjct: 73  IFISNLKYQTLLDSVQGRSPNIAFLPIISLPELETWVETWSFFETIHSRSYTHILRNLFS 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTTGTKDADQE 184
           D  E+F        I  +A    +Y   L                 + +  T      ++
Sbjct: 133 DPSEIFEDIVVNDEIKRRAADISKYYDDLIFATQLWQTQGEGVHTVNGTAYTINMYELKK 192

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L          E + FY  FA   +      M G ++  + I RDE+LHL+    ++N 
Sbjct: 193 KLYLCMNSVNALEAIRFYVSFACTFAFAERKLMEGNSKIIRLIARDENLHLSSTQHILNL 252

Query: 245 IKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
                         +E ++++R +   A   E  +A      G  +GLN     QY+++I
Sbjct: 253 WAKGKDDPEMAQIAQECKEEARAIFMNAVEQEKEWADYLFKTGSMIGLNKEILCQYVEYI 312

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           AN+R   IGL+  F  + NP PWM+  ++   
Sbjct: 313 ANQRMSAIGLDTPFDISSNPLPWMNNYLNSDN 344


>gi|294625675|ref|ZP_06704297.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|294664800|ref|ZP_06730124.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292600044|gb|EFF44159.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292605431|gb|EFF48758.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 347

 Score =  168 bits (426), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 77/353 (21%), Positives = 146/353 (41%), Gaps = 19/353 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 3   ATPLDRIKILEPRNPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L+  E+      +G  A+ +S     I   +  ++++P           
Sbjct: 63  GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +   +           ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRE 170

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  H  F  +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  EN  L   +           A  LE  +  E +  G  G++     +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           N+    +G+E L++   +N  PW+    D   + + +FFE R   Y++     
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342


>gi|332292139|ref|YP_004430748.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170225|gb|AEE19480.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 425

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 142/344 (41%), Gaps = 20/344 (5%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           R     KR  N       L P +Y   ++   +  +++W+ TE     D+  +K++  +T
Sbjct: 93  RDEQAQKRKTNIFEKRINLKPYEYPQLYDYVPAIRHSYWIHTEYNFTSDIQDFKTR--IT 150

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           D ER  IK  +   +  E          IY  +  PE        A  E  H+  + +++
Sbjct: 151 DVERSAIKNTMLAISQIEV-AVKGFWGDIYHKMPKPEVGAVGATFAESEVRHADAYSHLL 209

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             LGL++   F + ++ P +  +  +           +      + ++E+ + + +F + 
Sbjct: 210 EILGLNKE--FKLLKKKPVMMKRVQYL--------ETALKNAKSEDNKEYSESILLFSLF 259

Query: 196 FEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
            E +  ++ F  I++  +  N + GI+   +   ++E +H +FGID+I  IK ENP  + 
Sbjct: 260 IEHVSLFSQFLIIMAFNKHKNMLKGISNVVEATSKEEQIHGDFGIDIIKIIKAENPEWFD 319

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLF 313
            E     + M  EA   E          G +  L      ++++   N+    IG+EP+F
Sbjct: 320 AEHSATVQEMCKEAFKAESNIVDWIFEAGELDFLPKALVNEFIKDRFNKSLTSIGIEPVF 379

Query: 314 KYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQGAE--LKWD 352
           +  E       W  + I   K  +FF  R   Y + A+   + D
Sbjct: 380 EVDETLLKDAEWFDDEIIGTKHGDFFVKRSVNYTKRAQSITEDD 423


>gi|326783875|ref|YP_004324269.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7]
 gi|310003887|gb|ADO98282.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7]
          Length = 388

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 126/339 (37%), Gaps = 27/339 (7%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           V+   + M       V +    KY    +         W P EV +Q D + ++S   L 
Sbjct: 21  VDTKSQPMFFGAPLGVQRYDEYKYPVFDKLTTQMLGYFWRPEEVSLQKDRSDYQS---LR 77

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +++ +   NL +    +S+      +A   + + PE    +    F E +HS ++ YII
Sbjct: 78  PEQKHIFTSNLKYQILLDSVQGRGPGMAFAPYCALPELEGAMNVWQFMEMIHSRSYTYII 137

Query: 136 TSLGLDEGELFNMYREVPSITAKANWA-----------------LQYTQTLSSPSFTTGT 178
            ++  +  E+F+   +   I  +AN                     + +       +  T
Sbjct: 138 KNVYPNPAEVFDTILDDEKILKRANSVTASYDDFINDAQEYGQGRMWEKDWKDSPSSQWT 197

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
               +  L        + EG+ FY  FA   + G    M G A+    I RDE+ HL   
Sbjct: 198 IHELKRKLYRAVANVNILEGIRFYVSFACSFAFGELKLMEGSAKIISLISRDENQHLVLT 257

Query: 239 IDVINQIKIENPHLWTK---EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
            +++      +     +   E +     M   A   E  +A      G  +GLN     Q
Sbjct: 258 QNILKNWMNGDDPEMKQIADEERNNVIGMFRNAVEEEKEWAEYLFSGGSMIGLNDKLLNQ 317

Query: 295 YMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKK 331
           Y+++IAN+R   +G +P++      NP PW    I  K 
Sbjct: 318 YVEWIANKRMKALGFDPIYDQPLRNNPLPWTQHWISSKG 356


>gi|13358428|ref|NP_078636.1| Ribonucleotide reductase small subunit [Lymphocystis disease virus
           1]
          Length = 378

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 123/314 (39%), Gaps = 18/314 (5%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P  Y WA E      N HW   E+ + DD++ WK+   LT  E+  I + L  F   
Sbjct: 71  VFKPFHYSWAVEIRALHENIHWTEKELSLADDVSDWKT-GKLTLFEKDFIIQILRLFTQL 129

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V +           N E R  L   A  E  H   +  +  +LGL E E ++ +   
Sbjct: 130 DVSVGHIYHNIFIPIFKNNELRNMLCSFACREGTHQQAYALLNDTLGLPETE-YSTFLNY 188

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K  +                  D   E    L    V  EG+  +  FA +L+  
Sbjct: 189 KEMTNKTIYM------------NDMKTDNLSEIALSLI-KAVYNEGVVLFASFAMLLNFQ 235

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           R   M G+ +  ++ +RDE++H+     +      E   + T+EF    R +  E   LE
Sbjct: 236 RFGTMKGMGKVIEWSIRDENIHVEGLCKLFKTFISEYSFILTEEFFSAVRKIQAEVLQLE 295

Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDL 329
             +            GL       Y+++I  RR  Q+GL    +    NP  W+S +I  
Sbjct: 296 TDFIILLFTNITEIKGLTKLCMINYVKYILQRRTEQLGLLESTEVLLTNPIDWISWLIAG 355

Query: 330 KKEKNFFETRVTEY 343
           +   NFFE RVTEY
Sbjct: 356 RNITNFFENRVTEY 369


>gi|326560494|gb|EGE10876.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 7169]
 gi|326570427|gb|EGE20467.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis BC8]
 gi|326575699|gb|EGE25622.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis CO72]
 gi|326577166|gb|EGE27060.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis O35E]
          Length = 376

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/340 (21%), Positives = 137/340 (40%), Gaps = 25/340 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + NV  + M   +  +V++    K+    +      +  W P E+ +  D   +    
Sbjct: 8   QTKNNVLLEPMFFGQPVNVSRYDQQKHPIFEQLIEKQLSFFWRPEEIDVSKDRIDFAE-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+ +   NL +    +S+   +  + +   +S PE   ++   +F E +HS ++ 
Sbjct: 66  -LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------------SSPSFTT 176
           +II ++  D  ++F    +   I  +A+   +Y   L                       
Sbjct: 125 HIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGEGVYQIDGQSVE 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            T    ++ L    V   V E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 185 VTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKMIARDEALHLN 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++            +  Q+++  +   A   E A+A+     G  +GLN   
Sbjct: 245 GTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFKDGSMIGLNRDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             QY++FI N R   IGL  +F+   NP PW++  +    
Sbjct: 305 LCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSDN 344


>gi|190896520|gb|ACE96773.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 109/244 (44%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++     S                +  V +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWIDGSES--------------CAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|326560111|gb|EGE10501.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 46P47B1]
 gi|326564174|gb|EGE14410.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 12P80B1]
 gi|326573404|gb|EGE23372.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 101P30B1]
          Length = 376

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/340 (21%), Positives = 137/340 (40%), Gaps = 25/340 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + NV  + M   +  +V++    K+    +      +  W P E+ +  D   +    
Sbjct: 8   QTKNNVLLEPMFFGQPVNVSRYDQQKHPIFEQLIEKQLSFFWRPEEIDVSKDRIDFAE-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+ +   NL +    +S+   +  + +   +S PE   ++   +F E +HS ++ 
Sbjct: 66  -LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------------SSPSFTT 176
           +II ++  D  ++F    +   I  +A+   +Y   L                       
Sbjct: 125 HIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGEGIYQIDGQSVE 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            T    ++ L    V   V E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 185 VTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKMIARDEALHLN 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++            +  Q+++  +   A   E A+A+     G  +GLN   
Sbjct: 245 GTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFKDGSMIGLNRDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             QY++FI N R   IGL  +F+   NP PW++  +    
Sbjct: 305 LCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSDN 344


>gi|326565416|gb|EGE15593.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
           catarrhalis 103P14B1]
          Length = 376

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/340 (21%), Positives = 137/340 (40%), Gaps = 25/340 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + NV  + M   +  +V++    K+    +      +  W P E+ +  D   +    
Sbjct: 8   QTKNNVLLEPMFFGQPVNVSRYDQQKHPIFEQLIEKQLSFFWRPEEIDVSKDRIDFAE-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+ +   NL +    +S+   +  + +   +S PE   ++   +F E +HS ++ 
Sbjct: 66  -LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------------SSPSFTT 176
           +II ++  D  ++F    +   I  +A+   +Y   L                       
Sbjct: 125 HIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGEGIYQIDEQSVE 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            T    ++ L    V   V E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 185 VTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKMIARDEALHLN 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++            +  Q+++  +   A   E A+A+     G  +GLN   
Sbjct: 245 GTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFKDGSMIGLNRDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             QY++FI N R   IGL  +F+   NP PW++  +    
Sbjct: 305 LCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSDN 344


>gi|190896510|gb|ACE96768.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896556|gb|ACE96791.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896562|gb|ACE96794.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 109/244 (44%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++     S                +  V +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWIDGSES--------------CAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|296113118|ref|YP_003627056.1| ribonucleoside-diphosphate reductase 1 subunit beta [Moraxella
           catarrhalis RH4]
 gi|295920812|gb|ADG61163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Moraxella
           catarrhalis RH4]
          Length = 380

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/340 (21%), Positives = 137/340 (40%), Gaps = 25/340 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + NV  + M   +  +V++    K+    +      +  W P E+ +  D   +    
Sbjct: 12  QTKNNVLLEPMFFGQPVNVSRYDQQKHPIFEQLIEKQLSFFWRPEEIDVSKDRIDFAE-- 69

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+ +   NL +    +S+   +  + +   +S PE   ++   +F E +HS ++ 
Sbjct: 70  -LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYT 128

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------------SSPSFTT 176
           +II ++  D  ++F    +   I  +A+   +Y   L                       
Sbjct: 129 HIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGEGVYQIDGQSVE 188

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            T    ++ L    V   V E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 189 VTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKMIARDEALHLN 248

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++            +  Q+++  +   A   E A+A+     G  +GLN   
Sbjct: 249 GTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFKDGSMIGLNRDI 308

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             QY++FI N R   IGL  +F+   NP PW++  +    
Sbjct: 309 LCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSDN 348


>gi|215275538|sp|P0C8I0|RIR2_ASFK5 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
          Length = 327

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 137/330 (41%), Gaps = 30/330 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+++   W  Y    +  W   EV M  D+  W+    +   +R  
Sbjct: 2   EELLIEDSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            K+ L FF  ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  D
Sbjct: 59  YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   +F+   + P I   A W  Q+   + +                +  V +   EG
Sbjct: 119 EKEQQRIFSGIEKHPIIRKMAQWVQQWMDPVKNSLG-------------ERLVGFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L   N M G+    ++I RDE +H +F   +I+      P       +
Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYLNNIPE------E 219

Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           +    +L EA  L   +      K      G +     QY+++  +  C  +  + ++K 
Sbjct: 220 KIIHKILKEAVELVDEFISYAFDKARGSVPGFSKEMLFQYIRYFTDNLCFMLQCKSIYKV 279

Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
            ENPFP M++  ++  ++ NFFE R T+YQ
Sbjct: 280 -ENPFPQMTKFFLNEVEKTNFFELRPTQYQ 308


>gi|88861512|ref|ZP_01136127.1| ribonucleotide-diphosphate reductase beta subunit
           [Pseudoalteromonas tunicata D2]
 gi|88816487|gb|EAR26327.1| ribonucleotide-diphosphate reductase beta subunit
           [Pseudoalteromonas tunicata D2]
          Length = 219

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 111/227 (48%), Gaps = 15/227 (6%)

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           H   + +++ ++G+ E E ++ + +   +  K ++   +              ++ ++  
Sbjct: 1   HVAAYSHLLDTIGMPESE-YSAFMKYKEMKDKYDYMQGF------------NVNSKEDIA 47

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           + + VF    EG+  +  FA +L+  R NKM G+ +   + +RDE+LH N  I +  +  
Sbjct: 48  KTVAVFSAFTEGLQLFASFAILLNFPRHNKMKGMGQIVTWSVRDETLHCNSMIRIFKEFI 107

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCH 305
            ENP +WT   +++           E A+       G   GL A   + Y++FIANRR  
Sbjct: 108 KENPEIWTPTLKKELYEACRIIVEHEDAFIDLAFEMGPMEGLTAQEVKDYIRFIANRRLI 167

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKW 351
           Q+GLEP++   +NP  W+  +++  +  NFFE R TEY + + +  W
Sbjct: 168 QLGLEPIYDVQKNPLTWLDTMLNAVEHMNFFEGRATEYSKASTQGTW 214


>gi|190896550|gb|ACE96788.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++              D  + F + L   +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +A   + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LAFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|71280050|ref|YP_269047.1| ribonucleotide-diphosphate reductase subunit beta [Colwellia
           psychrerythraea 34H]
 gi|71145790|gb|AAZ26263.1| ribonucleotide reductase, beta subunit [Colwellia psychrerythraea
           34H]
          Length = 376

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 140/329 (42%), Gaps = 27/329 (8%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M    S +V++    +Y    +      +  W P EV +  D A W+S   LTD E+ 
Sbjct: 16  EPMFLGNSVNVSRYDQQRYIAFEKLIEKQLSFFWRPEEVDVSKDRADWQS---LTDSEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+ A ++   +   +S PE   ++   AF E +HS ++ +I+ +L  
Sbjct: 73  IFISNLKYQTLLDSMAARSVNAVLLPLVSLPEVETWVETWAFSETIHSRSYTHILRNLFT 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTL-----------------SSPSFTTGTKDADQ 183
           + GE+F+     P+I  +A+   ++   +                    +    T+   +
Sbjct: 133 EPGEIFDDIIVNPAILKRASSIAKFFDDVILTTQLLQSQGEGTYEVEGKTVEVSTRKLKE 192

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
                +     + E + FY  FA   +      + G A+  + I RDE+LHL     ++N
Sbjct: 193 RLFLAVCSVNAL-EAIRFYVSFACSFAFAERELLEGNAKIIKLIARDEALHLTGTQHILN 251

Query: 244 QIK--IENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
             +   ++P +    +E + +   +  +    E  +A      G  +GLNA    QY+++
Sbjct: 252 NWRSGKDDPEMKIISEELRDEGLQIFLDVVEQEKEWAQYLFKDGSMIGLNADILNQYIEY 311

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           I+N+R   IG    F    NP PWM+  +
Sbjct: 312 ISNQRLTAIGFGAPFDIKSNPLPWMNAYL 340


>gi|194366071|ref|YP_002028681.1| ribonucleotide-diphosphate reductase subunit beta [Stenotrophomonas
           maltophilia R551-3]
 gi|194348875|gb|ACF51998.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
           R551-3]
          Length = 346

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 80/353 (22%), Positives = 147/353 (41%), Gaps = 19/353 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N R+  +     + Y   +  Y     N W+P EV M+
Sbjct: 2   ATPLDRIKILEPRHPNRSTGIINGRTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 61

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L   E+      +G  A+ +S     I   +  ++++P           
Sbjct: 62  LDARQY---GELNAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 117

Query: 123 EEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    ++  +F + R  P+I  +    +               ++
Sbjct: 118 QEVIHNESYSYVLASITDLSNQNRIFEIARTHPTIIKRNAPIMGAYDDF--------MRE 169

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   ++ R N+M G  +   +I RDE  H  F  +
Sbjct: 170 KTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQNRMNGTGKIISFINRDELAHTKFISE 229

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  ENP L T E           A  LE  ++ E +  G  G++     +Y+++ A
Sbjct: 230 LIRAIIGENPELQTNELTAYVHQSFEHAIELETQWSSEVL-DGIDGIDVDEMVRYVKYRA 288

Query: 301 NRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           N+    +G+E L+   T+N  PW+    D   + + +FFE R   Y++     
Sbjct: 289 NKMAGMLGIERLYSDTTDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNADN 341


>gi|190896552|gb|ACE96789.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVHVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++              D  + F + L   +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|190896564|gb|ACE96795.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++              D  + F + L   +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|167957419|ref|ZP_02544493.1| ribonucleotide-diphosphate reductase subunit beta [candidate
           division TM7 single-cell isolate TM7c]
          Length = 277

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 89/265 (33%), Positives = 142/265 (53%), Gaps = 3/265 (1%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D  QL P++Y WA+  Y  A  N W P EV +  DLA +K    LT+DE+  +K  + + 
Sbjct: 16  DGLQLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFK---KLTEDEKNALKTVISYL 72

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
             +E L+  ++   IY  ++  EC  YL +Q +EEA H  TF+YII +   +  E++   
Sbjct: 73  NPNELLINKSLAFGIYPCVNAAECHLYLSKQMWEEANHFMTFEYIIETFPFNREEIYAAG 132

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
               S+  KA +  +Y   +        T +  ++F+++L  + +V EG+WFY+GF   +
Sbjct: 133 WGKKSLADKAAFQTKYVTRMMEERPDVTTTEGKKDFVRNLVAYNIVLEGIWFYSGFMVGM 192

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
           S  R N +  +     ++ RDE+LHL FGI+++  I  ENP L   EF  + R ++ +A 
Sbjct: 193 SFRRRNLLRNVGTLLDWVTRDENLHLEFGINLLLTILHENPDLQDPEFADEIRNLILQAV 252

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQ 294
            LE AY  + +P G +GLNA    Q
Sbjct: 253 ELEEAYNRDMLPNGILGLNADYVNQ 277


>gi|332993182|gb|AEF03237.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas sp.
           SN2]
          Length = 376

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/332 (21%), Positives = 134/332 (40%), Gaps = 25/332 (7%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M      +V +    K+    +      +  W P EV +  D   ++    LTD E+ 
Sbjct: 16  EPMFFGNPVNVARYDQQKHAIFEKLIEKQISFFWRPEEVDVSRDRVDFQ---KLTDPEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ +I+ +L  
Sbjct: 73  IFISNLKYQTLLDSVQGRSPNIAFLPIISLPELETWVETWSFFETIHSRSYTHILRNLFS 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTTGTKDADQE 184
           D  E+F        I  +A    +Y   L                      T      ++
Sbjct: 133 DPSEIFEDIVVNDEIKRRAADISKYYDDLIFATQLWQTQGEGVHTVDGVPHTINMYELKK 192

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L          E + FY  FA   +      M G ++  + I RDE+LHL+    ++N 
Sbjct: 193 KLFLCMNSVNALEAIRFYVSFACTFAFAERKLMEGNSKIIRLIARDENLHLSSTQHILNL 252

Query: 245 I--KIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
                ++P +    ++ ++++R +   A   E  +A      G  +GLN      Y+++I
Sbjct: 253 WARSKDDPEMAQIAQDCKEEARAIFMNAVEQEKEWADYLFKTGSMIGLNKEILCSYVEYI 312

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           AN+R   IGL+  F+ + NP PWM+  ++   
Sbjct: 313 ANQRMTAIGLDAPFEISSNPLPWMNNYLNSDN 344


>gi|326784480|ref|YP_004325029.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7]
 gi|310004513|gb|ADO98905.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7]
          Length = 388

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 141/358 (39%), Gaps = 30/358 (8%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
              +G++ +      V+   + M       V +    ++              W P EV 
Sbjct: 7   KEVSGMT-VFN-RNVVDTTKQFMFFGAPLSVQRYDSYRFPTFDRLTQQQLGYFWRPEEVS 64

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           +Q D A +     LTD ++ +   NL +    +S+      +A   + S PE    +   
Sbjct: 65  LQKDRADYAQ---LTDQQKHIFTSNLKYQIMLDSVQGRAPGMAFIPYCSLPELEGCMQVW 121

Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ---------------- 164
            F E +HS ++ YII ++  D  ELF+      +I ++A    +                
Sbjct: 122 QFMEMIHSRSYTYIIKNVYSDPSELFDTILTDDNILSRAESVTKSYDDFINYAHEYDQSN 181

Query: 165 -YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
            + + + S   +  T+   +++L        + EG+ FY  FA   + G    M G A+ 
Sbjct: 182 AWKEDMRSHPNSEWTRRDLKKYLYKAVANVNILEGIRFYVSFACSFAFGENKLMEGSAKI 241

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAHET 279
              I RDES HL     ++            KE  ++ +     M       E A+A+  
Sbjct: 242 LSLIARDESQHLVLTQQILKNWTEGKDDPEMKEIAEEEQETVEQMFKACVDEEKAWANYL 301

Query: 280 MPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKN 334
             +G  +GLN      Y+++IANRR   IGL+P++      NP PW    ++ K ++N
Sbjct: 302 FKEGSMIGLNERLLHNYVEWIANRRMKAIGLKPIYDQPLRNNPLPWTEHWLNSKGQQN 359


>gi|88801048|ref|ZP_01116596.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp.
           MED297]
 gi|88776187|gb|EAR07414.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp.
           MED297]
          Length = 369

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 141/330 (42%), Gaps = 18/330 (5%)

Query: 14  EKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ N   + M    + +V +    +Y    +      +  W P EV +Q D   +    
Sbjct: 8   QKKFNAFAEPMFFGEQVNVARYDQQRYPIFEQLIEKQLSFFWRPEEVDLQRDRKDF---I 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L ++E+ +   NL +    +S+   +  +A    +S PE   ++   AF E VHS ++ 
Sbjct: 65  ALPENEKHIFLSNLKYQTLLDSVQGRSPNVAFLPIVSLPELETWIETWAFSETVHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQ---------TLSSPSFTTGTKDADQ 183
           +II ++  +  ++F      P I  +A     Y            LSS +         +
Sbjct: 125 HIIRNIVTEPDQIFEDIVTTPEIIERAESISGYYDQLIAGVQKYHLSSETDRESQLHELK 184

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             L    V   V E + FY  FA   +     +M G A+  + I RDE+LHL+    ++ 
Sbjct: 185 RLLLLTMVSVNVLEAIRFYVSFACSFAFAEGARMEGNAKLIKLIARDEALHLSGTEFILR 244

Query: 244 QIKI--ENPHLWTKEFQQK--SRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
           Q     ++P +     +++   R +  +A   E A+A+     G  +GLNA    QY+++
Sbjct: 245 QWLHGGDDPQMQIVADEEQATIRQIFEDAAEQEKAWANYLFNDGSMIGLNAEILHQYIEY 304

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVID 328
           + ++R   + L P++   +NP PWM   + 
Sbjct: 305 LTDQRLDALSLSPIYGRRDNPLPWMDNWVS 334


>gi|154508355|ref|ZP_02043997.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797989|gb|EDN80409.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC
           17982]
          Length = 425

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 131/354 (37%), Gaps = 35/354 (9%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P     +   +  + +     + N++   K    W+       N W+P ++P+ +DL  W
Sbjct: 96  PSDTAHRGAPMATEPVF-EAINWNKIQDDKDLEVWD---RLTGNFWLPEKIPLSNDLPSW 151

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K+   LT DE+LM  R        ++L      +++      P         AF E+VH+
Sbjct: 152 KT---LTKDEQLMTNRVFTGLTLLDTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHA 208

Query: 129 HTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            ++  I ++L   E   E F    E  ++  KA     Y                     
Sbjct: 209 KSYSSIFSTLLSTEEINESFRWSNENEALQKKAEIVKSYYDGND---------------P 253

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           +   V   + E   FY+GF   +      K+   A+  + I+RDE++H  +         
Sbjct: 254 EKRKVASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAV 313

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            E+      + +  + ++L+E    E  Y  +      +GL     ++++++ AN+    
Sbjct: 314 NESSQERQDDLRDYTYSLLYELYENEEQYTEDLY--DPLGLT-EDVKKFLRYNANKALMN 370

Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +G E LF       NP    +   +  +  +FF    + Y  G  +      WD
Sbjct: 371 LGYEALFPADATDVNPAILAALSPNADENHDFFSGSGSSYVMGEVVDTEDEDWD 424


>gi|190896538|gb|ACE96782.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896548|gb|ACE96787.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896558|gb|ACE96792.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E +HS  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++              D  + F + L   +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|190574752|ref|YP_001972597.1| ribonucleotide-diphosphate reductase subunit beta [Stenotrophomonas
           maltophilia K279a]
 gi|190012674|emb|CAQ46302.1| putative ribonucleoside-diphosphate reductase beta chain
           [Stenotrophomonas maltophilia K279a]
          Length = 346

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/353 (22%), Positives = 147/353 (41%), Gaps = 19/353 (5%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
            T L  I+  E R       ++N ++  +     + Y   +  Y     N W+P EV M+
Sbjct: 2   ATPLDRIKILEPRHPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 61

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L   E+      +G  A+ +S     I   +  ++++P           
Sbjct: 62  LDARQY---GELNAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 117

Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           +E +H+ ++ Y++ S+    ++  +F + R  P+I  +    +               ++
Sbjct: 118 QEVIHNESYSYVLASITDLPNQNRIFEIARTHPTIIKRNAPIMGAYDDF--------MRE 169

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
              E L    +   + EG+ FY+GFA   ++ R N+M G  +   +I RDE  H  F  +
Sbjct: 170 KTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQNRMNGTGKIISFINRDELAHTKFISE 229

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +I  I  ENP L T E           A  LE  ++ E +  G  G++     +Y+++ A
Sbjct: 230 LIRAIIGENPELQTNELTAYVHQSFEHAIELETQWSSEVL-DGIDGIDVDEMVRYVKYRA 288

Query: 301 NRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           N+    +G+E L+   T+N  PW+    D   + + +FFE R   Y++     
Sbjct: 289 NKMAGMLGIERLYSDTTDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNVDN 341


>gi|221105497|ref|XP_002169241.1| PREDICTED: similar to ribonucleoside-diphosphate reductase small
           chain [Hydra magnipapillata]
          Length = 363

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 75/347 (21%), Positives = 141/347 (40%), Gaps = 35/347 (10%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPL--KYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
              A +++    ++ +LN       + P+  K+   W+ Y    + +W   E+   +D  
Sbjct: 26  EYDANDEKKKDSEEEILNKDLSRLVVKPINSKHKVIWDLYKKQKDAYWTAEEIDFSNDRH 85

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +   +    + +  IKR L FFA ++S+V  NI   + +     E       Q   E  
Sbjct: 86  DFLKVDK---NIQHFIKRILAFFAGADSIVNINIKKKLSKITVK-EAEIAYGFQQMMEDT 141

Query: 127 HSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS  +  ++  +  D     EL N ++ V SI     WA ++  +     ++        
Sbjct: 142 HSEVYADMLIKIITDPVERDELINAFKTVASIKRMIQWAQRWINSKRRIGYS-------- 193

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGR---ANKMVGIAEQYQYIMRDESLHLNFGID 240
                  V + +FEG+ F   FA I  L +    + M G+ +    I +DE +H  FG  
Sbjct: 194 ------IVVFCIFEGLMFSGAFAGIYWLKKILGEDIMKGLIQSNNLIAKDEGMHTIFGCV 247

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
           +   I             ++   ++ EA  +  ++  + +    +G+N      Y++++A
Sbjct: 248 IYTFIIYRLSF-------EEICELMKEAVEICKSFTKDAICVDMIGMNVELMYNYIEYVA 300

Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           +R    +G E +F     + F +M   I    + NFFE R TEYQ+ 
Sbjct: 301 DRLMVYLGYEKIFMTKIPDQFQFMD-TIGFLNKDNFFERRATEYQKA 346


>gi|294945135|ref|XP_002784568.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239897674|gb|EER16364.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 238

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 25/230 (10%)

Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +HS T+  +I +   D  E   +F     VPS+  KA WAL +              
Sbjct: 1   MENIHSETYSLLIDNYIKDPAEKDKIFRAIETVPSVRKKAEWALSWIN------------ 48

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D  F + L   +   EG+ F   F  I  L +   M G+    + I RDE LH +F  
Sbjct: 49  -DDNCFSERLIA-FACVEGILFSGSFCAIYWLKKRGLMPGLTFSNELISRDEGLHADFAC 106

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            + N +       +T+   ++   ++  A  +E  +  E++P   +G+N+    +Y++F+
Sbjct: 107 LLYNMM------HYTRLPDERVHEIVRGAVDVERVFISESLPVSLIGMNSQLMCRYIEFV 160

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           A+R    +G   L+  T NPF WM ++I L+ + NFFE RV EYQ+G  +
Sbjct: 161 ADRLLVALGHPKLYNAT-NPFDWM-KMISLQGKTNFFEKRVGEYQKGGVM 208


>gi|71276518|ref|ZP_00652793.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon]
 gi|71900741|ref|ZP_00682863.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|170729741|ref|YP_001775174.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
           fastidiosa M12]
 gi|71162695|gb|EAO12422.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon]
 gi|71729511|gb|EAO31620.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|167964534|gb|ACA11544.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M12]
          Length = 349

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 76/333 (22%), Positives = 142/333 (42%), Gaps = 19/333 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N ++  +     + Y   +  Y     N W+P EV M+ D   +     L+  E+   
Sbjct: 25  IINGKTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKIDKRQY---GELSAREKNAY 81

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
              +G  A+ +S     I   +  ++++P           +E +H+ ++ Y++ S+    
Sbjct: 82  DAIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLA 140

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F + R  P+I  +    +Q              ++   E L    +   + EG+ 
Sbjct: 141 NQNRVFEIARTHPTILKRNAPIMQAYDDF--------MREKTAETLLYSLIQSSILEGIN 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R N+M G  +   +I RDE  H  F  +VI  I  ENP L T      
Sbjct: 193 FYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDALTDY 252

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
                  A  LE  +  E +  G  G++     +Y+++ AN+    +G+E L+ + T+N 
Sbjct: 253 VHQAFAHAIELETQWTGEVL-NGIDGIDVEEMIRYVKYRANKMAGMLGIETLYTETTDNV 311

Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
            PW+    D   + + +FFE R   Y++     
Sbjct: 312 MPWIRAYADNFTETKTDFFEMRNASYKKTNVDN 344


>gi|190896508|gb|ACE96767.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896514|gb|ACE96770.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896522|gb|ACE96774.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896540|gb|ACE96783.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896542|gb|ACE96784.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++     S                +  V +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWIDGSES--------------CAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|86140897|ref|ZP_01059456.1| ribonucleoside-diphosphate reductase, beta subunit 1
           [Leeuwenhoekiella blandensis MED217]
 gi|85832839|gb|EAQ51288.1| ribonucleoside-diphosphate reductase, beta subunit 1
           [Leeuwenhoekiella blandensis MED217]
          Length = 427

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 76/338 (22%), Positives = 141/338 (41%), Gaps = 22/338 (6%)

Query: 20  DDKRMLNARSDVN----QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            +KR L  ++++      L P +Y    E   +  +++W+ TE     D+  +K+  GL+
Sbjct: 95  RNKRALERKTNIFEKRINLKPYEYPELNEYVAAIRHSYWIHTEFNFTSDIQDFKT--GLS 152

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
           + ER  IK  +   +  E          ++  L  PE        A  E  H   + +++
Sbjct: 153 EVERSAIKNTMLAISQIEV-AVKTFWGDVHHRLPKPEIAAVGATFAESEVRHHDAYSHLL 211

Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             LGL+  E F   ++ P I  + ++           S      D D+E+ + + +F + 
Sbjct: 212 EILGLN--EEFKELKKKPVIMKRVHY--------LETSLKHAKSDDDREYTESILLFALF 261

Query: 196 FEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
            E +  ++ F  I++  +  N + GI+   +   ++E +H +FG+D+IN IK ENP  + 
Sbjct: 262 IEHVSLFSQFLIIMAFNKHKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKENPEWFD 321

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLF 313
           +E     + M   +   E         KG +  L      ++++   N+    IGLE LF
Sbjct: 322 EEHNNLIKEMCLNSFEAESKVVDWIFEKGELDFLPKAVINEFLKNRFNKSLEAIGLEKLF 381

Query: 314 KYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
              E       W  + I   K  +FF  R   Y +  +
Sbjct: 382 DIDEALLQETEWFDDEIIGTKHGDFFVKRSINYSKRTQ 419


>gi|15837799|ref|NP_298487.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
           fastidiosa 9a5c]
 gi|28198393|ref|NP_778707.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
           fastidiosa Temecula1]
 gi|9106169|gb|AAF84007.1|AE003954_4 ribonucleoside-diphosphate reductase beta chain [Xylella fastidiosa
           9a5c]
 gi|28056463|gb|AAO28356.1| ribonucleoside-diphosphate reductase beta chain [Xylella fastidiosa
           Temecula1]
          Length = 346

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 75/333 (22%), Positives = 142/333 (42%), Gaps = 19/333 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N ++  +     + Y   +  Y     N W+P EV M+ D   +     L+  E+   
Sbjct: 22  IINGKTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKIDKRQY---GELSAREKNAY 78

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
              +G  A+ +S     I   +  ++++P           +E +H+ ++ Y++ S+    
Sbjct: 79  DAIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLA 137

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F + R  P+I  +    +Q              ++   E L    +   + EG+ 
Sbjct: 138 NQNRVFEIARTHPTILKRNAPIMQAYDDF--------MREKTAETLLYSLIQSSILEGIN 189

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R N+M G  +   +I RDE  H  F  +VI  I  ENP L T      
Sbjct: 190 FYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDALTDY 249

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
                  A  LE  +  E +  G  G++     +Y+++ AN+    +G++ L+ + T+N 
Sbjct: 250 VHQAFAHAIELETQWTGEVL-DGIDGIDVEEMIRYVKYRANKMAGMLGIQTLYTETTDNV 308

Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
            PW+    D   + + +FFE R   Y++     
Sbjct: 309 MPWIRAYADNFTETKTDFFEMRNASYKKTNVDN 341


>gi|109898789|ref|YP_662044.1| ribonucleotide-diphosphate reductase subunit beta
           [Pseudoalteromonas atlantica T6c]
 gi|109701070|gb|ABG40990.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 376

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   + M      +V +    K+    +      +  W P EV +  D   ++    L++
Sbjct: 12  DPLQEPMFFGNPVNVARYDQQKHSIFEKLIEKQISFFWRPEEVDVSKDRVDFQ---KLSE 68

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +A    +S PE   +    +F E +HS ++ +I+ 
Sbjct: 69  SEKHIFISNLKYQTLLDSIQGRSPNIAFLPIISIPELETWTETWSFFETIHSRSYTHILR 128

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLS---------SPSFTTGTKDADQEFLQ 187
           +L  D   +F+   E   I  +A    +Y   L               T   +     ++
Sbjct: 129 NLFGDPSSIFSDIVENEQIKKRAADISKYYDDLIFYTQLWQTLGEGTHTINGEEHVVTMR 188

Query: 188 DL-------FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
            L              E + FY  FA   +      M G ++  + I RDE+LHL     
Sbjct: 189 TLKIKLFLCMNSVNALEAIRFYVSFACTFAFAERELMEGNSKIIRLISRDENLHLTSTQH 248

Query: 241 VINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
           ++N            E    +++++  +  +A   E  +A      G  +GLN     QY
Sbjct: 249 ILNLWAKGKDDPEMAEIALEYKEEATNIFLDAVNQEKEWAEYLFQNGSMIGLNKDILCQY 308

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           ++FIAN R   IGL+  F    NP PWM+  ++   
Sbjct: 309 VEFIANHRMSAIGLDQPFDIKNNPLPWMNNYLNSDN 344


>gi|190896546|gb|ACE96786.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++     S                +  V +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWMDGSES--------------CAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|190896516|gb|ACE96771.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++              D  + F + L   +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|161617990|ref|YP_001595470.1| ribonucleotide reductase beta subunit [Enterobacteria phage
           phiEcoM-GJ1]
 gi|150416409|gb|ABR68787.1| ribonucleotide reductase beta subunit [Enterobacteria phage
           phiEcoM-GJ1]
          Length = 372

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 134/336 (39%), Gaps = 23/336 (6%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M      +V +    KYG   +      +  W P EV +  D   ++   
Sbjct: 8   QTKNNQLLEPMFFGQNVNVARYDQQKYGIFEKLIEKQLSFFWRPEEVDVSQDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L  +E+ +   NL +    +S+        +   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPANEQHIFTSNLRYQILLDSIQGRGPNTVLLPIVSIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-------------SSPSFTTGTK 179
           +II ++  D   +F+       I A+A    QY   L             S        +
Sbjct: 125 HIIRNIVTDPSIIFDEIVTNEHIKARAIGISQYYDELQQLTALWQLFGEGSHAGHEISLR 184

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL    
Sbjct: 185 ELKKKLYLCLMSINAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLTGTQ 243

Query: 240 DVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
            ++N      ++P +     E +Q+ + +  +A   E  +A      G  +GLN      
Sbjct: 244 HMLNLLASGKDDPEMGEIAAECRQECQKLFEDAAQQEKDWADYLFKDGSMIGLNKQILCG 303

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           Y+++I N R   +GL+  FK   NP PW++  ++  
Sbjct: 304 YVEYITNIRMQAVGLDAPFKGATNPIPWINAWLNSD 339


>gi|190896532|gb|ACE96779.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896554|gb|ACE96790.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++              D  + F + L   +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|157375444|ref|YP_001474044.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           sediminis HAW-EB3]
 gi|157317818|gb|ABV36916.1| Ribonucleoside-diphosphate reductase [Shewanella sediminis HAW-EB3]
          Length = 376

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 137/328 (41%), Gaps = 25/328 (7%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M    S +V++    K+    +      +  W P E+ +  D A W+    LT+ E+ 
Sbjct: 16  EPMFLGNSVNVSRYDQQKHVSFEKLIEKQLSFFWRPEEIDISKDRADWQ---RLTESEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+ A ++   +   +S PE   ++   AF E +HS ++ +I+ +L  
Sbjct: 73  IFISNLKYQTLLDSMAARSVNAVLLPLVSLPEVETWVETWAFSETIHSRSYTHILRNLFT 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS------------SPSFTTGTKDADQEFLQD 188
           + GE+F+     P+I  +A    +Y   +             S      T +     L++
Sbjct: 133 EPGEVFDDIVVNPAILKRATSIAKYFDDVILTTQLLQSQGEGSYEVNGETIEVSARKLKE 192

Query: 189 LFVFYVV----FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                V      E + FY  FA   +      + G A+  + I RDE+LHL+    ++  
Sbjct: 193 RLYLAVCSVNALEAIRFYVSFACSFAFAERELLEGNAKIIKLIARDEALHLSGTQHILKL 252

Query: 245 IKIENPHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
               N         +E ++  R +  +    E  +A      G  +GLNA   +QY+++I
Sbjct: 253 WANGNDDPEMVEVCQELREAGRQVFLDVVEQEKEWADYLFKDGSMIGLNAEILKQYIEYI 312

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           +N R   IG E  F    NP PW++  +
Sbjct: 313 SNNRMEAIGYEAPFAIKNNPLPWINTYL 340


>gi|132618|sp|P26713|RIR2_ASFM2 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
          Length = 327

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 135/330 (40%), Gaps = 30/330 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+++   W  Y    +  W   EV M  D+  W+    +   +R  
Sbjct: 2   EELLIENSQRFTIFPIQHPECWNWYKKLESMTWTAQEVDMCKDIDDWE---AMPKPQREF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            K+ L FF  ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  D
Sbjct: 59  YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   +F+   + P I   A W  Q+     +                +  V +   EG
Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWMDPARNSLG-------------ERLVGFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L   N M G+    ++I RDE +H +F   +I+      P       +
Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------E 219

Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           +    +L EA  L   + +    K      G +     QY+++  +  C  +  + ++  
Sbjct: 220 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYNV 279

Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
             NPFP M++  ++  ++ NFFE R T+YQ
Sbjct: 280 G-NPFPQMTKFFLNEVEKTNFFELRPTQYQ 308


>gi|71901120|ref|ZP_00683227.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|182681036|ref|YP_001829196.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
           fastidiosa M23]
 gi|71729125|gb|EAO31249.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
 gi|182631146|gb|ACB91922.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M23]
 gi|307579504|gb|ADN63473.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 349

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/333 (22%), Positives = 142/333 (42%), Gaps = 19/333 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N ++  +     + Y   +  Y     N W+P EV M+ D   +     L+  E+   
Sbjct: 25  IINGKTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKIDKRQY---GELSAREKNAY 81

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
              +G  A+ +S     I   +  ++++P           +E +H+ ++ Y++ S+    
Sbjct: 82  DAIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLA 140

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F + R  P+I  +    +Q              ++   E L    +   + EG+ 
Sbjct: 141 NQNRVFEIARTHPTILKRNAPIMQAYDDF--------MREKTAETLLYSLIQSSILEGIN 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R N+M G  +   +I RDE  H  F  +VI  I  ENP L T      
Sbjct: 193 FYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDALTDY 252

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
                  A  LE  +  E +  G  G++     +Y+++ AN+    +G++ L+ + T+N 
Sbjct: 253 VHQAFAHAIELETQWTGEVL-DGIDGIDVEEMIRYVKYRANKMAGMLGIQTLYTETTDNV 311

Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
            PW+    D   + + +FFE R   Y++     
Sbjct: 312 MPWIRAYADNFTETKTDFFEMRNASYKKTNVDN 344


>gi|163786628|ref|ZP_02181076.1| ribonucleoside-diphosphate reductase , beta subunit 1
           [Flavobacteriales bacterium ALC-1]
 gi|159878488|gb|EDP72544.1| ribonucleoside-diphosphate reductase , beta subunit 1
           [Flavobacteriales bacterium ALC-1]
          Length = 429

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 131/323 (40%), Gaps = 18/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P +Y    +   +  +++W+ +E     D+  +K++  LT  E+  IK  +   +
Sbjct: 112 RINLKPYEYPALNDYVDAIRHSYWIHSEFNFTSDIQDFKTR--LTVVEQNAIKNTMLAIS 169

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E     +    IY  +  PE        A  E  H   + +++  LGL+    F   +
Sbjct: 170 QIEV-AVKSFWGEIYNKMPKPEIGAVGATFAESEVRHHDAYSHLLEILGLNNE--FKHLK 226

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           + P I  + ++           +      + ++E+ + + +F +  E +  ++ F  I++
Sbjct: 227 KKPVIMKRVHYL--------ETALKNAKSEDNKEYAESILLFSLFIEHVSLFSQFLIIMA 278

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N + G++   +   ++E++H +FGID+I  IK ENP  +  E  +  R +  EA 
Sbjct: 279 FNKHKNMLKGVSNVVEATSKEENIHGDFGIDIIKIIKAENPTWFDAEHNEIVRELCREAF 338

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
             E          G +  L      ++++   N     IG+E +F   E       W  +
Sbjct: 339 ASESELVDWIFEAGELEFLPKDVINEFLKNRFNNSLESIGIEKVFDVDETLLTQTEWFDD 398

Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
            I   K  +FF  R   Y +  +
Sbjct: 399 EIIGTKHGDFFVKRSINYSKRTK 421


>gi|253574542|ref|ZP_04851883.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251846247|gb|EES74254.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 343

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/351 (23%), Positives = 152/351 (43%), Gaps = 22/351 (6%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           L  I   E   N   + +    S +     ++    ++ Y     NHW+  E+PM  D  
Sbjct: 3   LQTIFNTEAP-NKSTRIIGGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMAKDAQ 61

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L  +E+   K N+   A  +S+     V  + R+ ++            +E V
Sbjct: 62  QF---ALLDPEEQRTFKINISLLAVLDSMQT-MFVGDVKRYFTDSSLEAISAIIGQQEVV 117

Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++ Y+++S+    ++ E+F  ++  P +  +  +     Q            +   +
Sbjct: 118 HNQSYSYVLSSIVSEQEQKEIFEYWKHDPVLLDRNKFIANIYQNFRD--------EPTPQ 169

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V  ++ EG++FY+ FA   +L R  KM+G ++   YI RDE+ H  F  +V  Q
Sbjct: 170 SFFEALVADLILEGIFFYSTFAFFYNLARDQKMMGTSQMISYIQRDENQHCYFFAEVFKQ 229

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           + I+ P L TKE    +   +  A  LE  +AH T+ K   G++      Y+++IAN+R 
Sbjct: 230 LLIDYPELNTKENIDYAYRTIDRAVELETNWAHYTL-KNVPGIDLNELSDYIKYIANKRL 288

Query: 305 HQIGLEPLF-KYTENPFPWM----SEVIDLKKEKNFFETRVTEYQQGAELK 350
             +GLE  +     N  PW+     E ++   + +FFE +   Y +  +  
Sbjct: 289 TLMGLEKAYAGVDINCMPWIKPFSDEALNA-TKTDFFEAKSRNYGKVGDDN 338


>gi|329922162|ref|ZP_08277907.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           sp. HGF5]
 gi|328942352|gb|EGG38619.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           sp. HGF5]
          Length = 370

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/350 (22%), Positives = 147/350 (42%), Gaps = 20/350 (5%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +  I   E   N   + +    S +     ++    ++ Y     NHW+  E+PM  D  
Sbjct: 30  MQKIFNTEAP-NRSTRVIEGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMSKDAQ 88

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L  +E+   K N+   A  +S+     V  + R+ ++            +E V
Sbjct: 89  QF---PRLDPEEQRTFKINISLLAVLDSMQT-MFVGDVKRYFTDSSLEAISAIIGQQEVV 144

Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++ Y+++S+    ++ E+F  ++  P +  +  +     Q            +   +
Sbjct: 145 HNQSYSYVLSSIVSEQEQKEIFEYWKHDPVLLERNQFISNIYQNFRD--------NPSPQ 196

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V  ++ EG++FY+ FA   +L R  KM+  ++   YI RDE+ H  F  +V  Q
Sbjct: 197 SFFEAMVADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQ 256

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +  + P L TKE        +  A  LE  +AH T+     G++      Y+++IANRR 
Sbjct: 257 LLKDFPELNTKENIDYLYRTIDRAVELETNWAHYTLSN-VRGIDLNELSDYIKYIANRRI 315

Query: 305 HQIGLEPLFK-YTENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAELK 350
             +GLE  ++    N  PW    S+      + +FFE +   Y +  +  
Sbjct: 316 TMMGLEKAYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGDDN 365


>gi|308049658|ref|YP_003913224.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Ferrimonas balearica DSM 9799]
 gi|307631848|gb|ADN76150.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Ferrimonas balearica DSM 9799]
          Length = 378

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 133/336 (39%), Gaps = 25/336 (7%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   + M      +V +    K+    +      +  W P EV +  D   +   N L D
Sbjct: 14  DALKEPMFLGNPVNVARYDQQKHRIFEDLIEKQLSFFWRPEEVDVTQDRIDY---NALPD 70

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +II 
Sbjct: 71  HEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFYETIHSRSYTHIIR 130

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTTGTKD 180
           ++  D G +F+       I  +A+   QY   L                 + +  T T  
Sbjct: 131 NIVNDPGVVFDDIVVNEEIQKRASDISQYYDDLIHTTQLYQQFGEGTHDINGNKVTLTLR 190

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             ++ L    +   V E + FY  FA   +      M G A+  ++I RDE LHL     
Sbjct: 191 GLKKKLYLCLMSVNVLEAVRFYVSFACSFAFAERKLMEGNAKIIRFIARDEQLHLVGTQH 250

Query: 241 VINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
           +IN +          E       +S  +   A   E A+A      G  +GLN    E Y
Sbjct: 251 MINLMADGRDDPEMAEIAIECHSESIEIFRRAAEQEKAWASYLFKDGSMLGLNKQIIEDY 310

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           ++FI N R   IGL PLF    NP PWMS  ++   
Sbjct: 311 VEFITNERMAGIGLPPLFDKRSNPLPWMSTWLESDT 346


>gi|162849254|emb|CAN10143.1| Ribonucleotide reductase small subunit [African swine fever virus
           Benin 97/1]
          Length = 327

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 139/330 (42%), Gaps = 30/330 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+++   W  Y    +  W   EV M  D+  W+    +   +R  
Sbjct: 2   EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            K+ L FF  ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  D
Sbjct: 59  YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   +F+   + P I   A W  Q+              D D+  L +  V +   EG
Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L   N M G+    ++I RDE +H +F   +I+      P       +
Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------E 219

Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           +    +L EA  L   + +    K      G +     QY+++  +  C  +  + ++K 
Sbjct: 220 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 279

Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
             NPFP M++  ++  ++ NFFE R T+YQ
Sbjct: 280 G-NPFPQMTKFFLNEVEKTNFFELRPTQYQ 308


>gi|149369595|ref|ZP_01889447.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified
           eubacterium SCB49]
 gi|149357022|gb|EDM45577.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified
           eubacterium SCB49]
          Length = 424

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 146/340 (42%), Gaps = 26/340 (7%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E++ ++ ++R+         L P +Y   +E   +  +++W+ TE     D+  +K++  
Sbjct: 98  ERKTDIFERRI--------SLKPYEYPQLYEYVPAIRHSYWIHTEFNFTSDIQDFKTR-- 147

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L + ER  IK  +   +  E     +    ++  +  PE        A  E  H+  + +
Sbjct: 148 LNEVERSAIKNTMLAISQIEV-AVKSFWGDLHLRMPKPEIGAVGSTFAESEVRHADAYSH 206

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           ++  LGL++   F   ++ P I  +  +           +      D ++E+ + + +F 
Sbjct: 207 LLEILGLNKE--FKALKKKPVIMKRVQYL--------ESALRNSKSDDNEEYAEAVLLFS 256

Query: 194 VVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
           +  E +  ++ F  I++  +  N + G++   +   ++E +H +FGID+I  +K E+P  
Sbjct: 257 LFIEHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEEQIHGDFGIDLILILKDEHPEW 316

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEP 311
           +T E+ +  + +  +A   E+        +G +  L      ++++   N+    IG+E 
Sbjct: 317 FTPEYHENIKRLCLDAYEAEVDLVDWIFEEGELDFLPKTVINEFLKNRFNKSLESIGVEK 376

Query: 312 LFKYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
           +F   E       W  + I   K  +FF  R   Y +  +
Sbjct: 377 VFDVDEALVIQTEWFDDEIIGTKHGDFFVKRSVNYSKRTQ 416


>gi|282598964|ref|YP_003358881.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Deftia phage phiW-14]
 gi|257219034|gb|ACV50049.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
           subunit beta [Deftia phage phiW-14]
          Length = 346

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 127/320 (39%), Gaps = 9/320 (2%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P  Y   ++      + HW+  E  + DD+  W++++  +DDER  IK  L  F   
Sbjct: 16  TYKPFLYQEFYDLMTKHEDAHWVKQEAELGDDVNDWRNRS--SDDERSFIKEILTVFTQG 73

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           + +VA+N          N E   +L+  A  E +H   +     + GL +  +F  +RE 
Sbjct: 74  DVVVADNYKSIFIPAFKNNEVSNWLVGVAAREVIHQDAYAMANETFGLPDS-MFGRFREY 132

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  + +                G           L   +     +  +  F      G
Sbjct: 133 QEMRERNDLMATQYDPSMVEGLAMGLVHTTFNEGVCLMGAFA---NLLQFNRFDVPGFNG 189

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
              +  G+ +  ++ +RDE +H+     +  ++  E+P L T E +++   +       E
Sbjct: 190 YRGRYKGLTKINKWSLRDEGIHVEGSSLLYRKVMGEHPWLMTDEHKKQVYDLARAVVAAE 249

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
             +      K  + +     + Y++++ NRR  Q+G + +F+    P PW+ E++     
Sbjct: 250 DLFLDLAFKKYQLTMTKDESKAYVRYMMNRRLLQLGHKAIFEVQGIPCPWIEEILGGAGG 309

Query: 333 K---NFFETRVTEYQQGAEL 349
           K   NFFETRV  YQ    L
Sbjct: 310 KRDSNFFETRVDNYQASGAL 329


>gi|326796346|ref|YP_004314166.1| ribonucleoside-diphosphate reductase [Marinomonas mediterranea
           MMB-1]
 gi|326547110|gb|ADZ92330.1| Ribonucleoside-diphosphate reductase [Marinomonas mediterranea
           MMB-1]
          Length = 377

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 134/330 (40%), Gaps = 26/330 (7%)

Query: 21  DKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            + M L    +V +    K+    +      +  W P EV +  D   +     L + E+
Sbjct: 15  KEPMFLGENVNVARYDQQKHPIFEKLIEKQLSFFWRPEEVDLSSDRKDF---LNLAEHEQ 71

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +II ++ 
Sbjct: 72  HIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIV 131

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT---------KDADQEFLQDLF 190
            D   +F+       IT +A+   +Y   L        T            + +      
Sbjct: 132 NDPTVIFDDIIVNEEITKRADSVSRYYDDLIEKVNLYNTLGLGVHNVPGKGEVDVSMKAL 191

Query: 191 VFYVVF--------EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
              +          E + FY  FA   +      M G A+  + I RDE+LHL     ++
Sbjct: 192 KKALYVTLASVNVLEAIRFYVSFACSFAFAERTLMEGNAKIIKLIARDEALHLTGTQHML 251

Query: 243 N--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQ 297
           N      ++P +    +E +Q+   +  EA   E  +A      G  +GLNA    QY++
Sbjct: 252 NLMTSGKDDPEMAIIAQECRQEITDIFIEAAQQEKEWAKYLFKDGSMIGLNAEILGQYVE 311

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           +I+N R   +GLEP F+   NP PW++  +
Sbjct: 312 YISNVRMQAVGLEPAFETKSNPIPWINAWL 341


>gi|9628152|ref|NP_042738.1| ribonucleotide reductase small subunit [African swine fever virus]
 gi|1172939|sp|P42492|RIR2_ASFB7 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|780414|gb|AAA65274.1| ribonucleotide reductase small subunit [African swine fever virus]
 gi|1097433|prf||2113434AT ribonucleotide reductase:SUBUNIT=small
          Length = 334

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 139/330 (42%), Gaps = 30/330 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+++   W  Y    +  W   EV M  D+  W+    +   +R  
Sbjct: 9   EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 65

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            K+ L FF  ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  D
Sbjct: 66  YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 125

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   +F+   + P I   A W  Q+              D D+  L +  V +   EG
Sbjct: 126 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEG 172

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L   N M G+    ++I RDE +H +F   +I+      P       +
Sbjct: 173 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------E 226

Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           +    +L EA  L   + +    K      G +     QY+++  +  C  +  + ++K 
Sbjct: 227 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 286

Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
             NPFP M++  ++  ++ NFFE R T+YQ
Sbjct: 287 G-NPFPQMTKFFLNEVEKTNFFELRPTQYQ 315


>gi|215275540|sp|P0C8I2|RIR2_ASFWA RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
          Length = 327

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/330 (23%), Positives = 135/330 (40%), Gaps = 30/330 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+++   W  Y    +  W   EV M  D+  W+    +   +R  
Sbjct: 2   EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            K+ L FF  ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  D
Sbjct: 59  YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   +F+   + P I   A W  Q+     +                +  V +   EG
Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWMDPTKNSLG-------------ERLVGFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L   N M G+    ++I RDE +H +F   +I+      P       +
Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------E 219

Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           +    +L EA  L   +      K      G +     QY+++  +  C  +  + ++K 
Sbjct: 220 KIIHKILKEAVELVDEFISYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 279

Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
             NPFP M++  ++  ++ NFFE R T+YQ
Sbjct: 280 G-NPFPQMTKFFLNEVEKTNFFELRPTQYQ 308


>gi|190896518|gb|ACE96772.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++     S                +  V +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWIDGSES--------------CAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYYVA-NPFDGM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|308806626|ref|XP_003080624.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
           tauri]
 gi|116059085|emb|CAL54792.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
           tauri]
          Length = 241

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 26/225 (11%)

Query: 129 HTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
             +  +I     D  E   LF     +P +  KA+WAL++  +  S              
Sbjct: 24  EMYSLLIDQYVKDPAEKSHLFRAIETIPCVKKKADWALKWIDSSDS-------------- 69

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
             +  + +   EG++F   F  I  L +   M G+    + I RDE LH +F   +   +
Sbjct: 70  FAERLLAFACIEGIFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLYQML 129

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
                    K  ++  R ++ EA  +E  +  +++P   VG+NA     Y++++A+    
Sbjct: 130 NN-------KPDEEVVRKIVTEAVEIEKEFVCDSLPCALVGMNAGMMSDYIEYVADHLFT 182

Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            +G+   +  T NPF WM E+I L+ + NFFE RV EYQ+   + 
Sbjct: 183 SLGMPKEYN-TANPFDWM-ELISLQGKTNFFEKRVGEYQKAGVMN 225


>gi|323354474|gb|EGA86313.1| Rnr2p [Saccharomyces cerevisiae VL3]
          Length = 306

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 18/232 (7%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER
Sbjct: 74  KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WAL++ Q            DAD  F + L   +   
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           EG++F   FA I  L +   M G+    + I RDE LH +F   +   +K +
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNK 290


>gi|162849427|emb|CAN10392.1| Ribonucleotide reductase small subunit [African swine fever virus
           OURT 88/3]
 gi|291289488|emb|CBH29145.1| BA71V-F334L [African swine fever virus E75]
 gi|303398729|emb|CBW46710.1| F334L [African swine fever virus Georgia 2007/1]
          Length = 334

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 139/330 (42%), Gaps = 30/330 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+++   W  Y    +  W   EV M  D+  W+    +   +R  
Sbjct: 9   EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 65

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            K+ L FF  ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  D
Sbjct: 66  YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 125

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   +F+   + P I   A W  Q+              D D+  L +  V +   EG
Sbjct: 126 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEG 172

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L   N M G+    ++I RDE +H +F   +I+      P       +
Sbjct: 173 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------E 226

Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           +    +L EA  L   + +    K      G +     QY+++  +  C  +  + ++K 
Sbjct: 227 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 286

Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
             NPFP M++  ++  ++ NFFE R T+YQ
Sbjct: 287 G-NPFPQMTKFFLNEVEKTNFFELRPTQYQ 315


>gi|326784150|ref|YP_004324543.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1]
 gi|310004882|gb|ADO99273.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1]
          Length = 395

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 127/339 (37%), Gaps = 27/339 (7%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           V+   + M       V +    KY    +         W P EV +Q D A ++    L 
Sbjct: 28  VDTTKQHMFFGPPLGVQRYDNFKYPVFDKLTQQQLGYFWRPEEVSLQKDRADYQQ---LR 84

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
            +++ +   NL +    +S+      +A   + S PE    +      E VHS ++ +II
Sbjct: 85  PEQKHIFTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNIWQTMEMVHSRSYTHII 144

Query: 136 TSLGLDEGELFNMYREVPSITAK-----------------ANWALQYTQTLSSPSFTTGT 178
            ++  D   +F+       I  +                  +    + +           
Sbjct: 145 KNIYPDPSVVFDAIITDEKILERATSVTAAYDEFLQAAHMYDTGNMWKEDWKDSPTAKWE 204

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
               +  L        + EG+ FY  FA   + G    M G A+    I RDES H+   
Sbjct: 205 LKDLKRKLYRAVANVYILEGIRFYVSFACSFAFGENKLMEGNAKIISLIARDESQHMTIT 264

Query: 239 IDVINQIKIENPHLWT---KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
            +++N+ K  +        +E ++    M ++    E+ +A      G  +GLNA   ++
Sbjct: 265 QNILNKWKQGDDPDMVEIAQEEEKNVYEMFNKCVEEEVIWADYLFRDGSMIGLNAKLLQK 324

Query: 295 YMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKK 331
           Y+++ ANRR   IGL+P F    + NP PW    +  + 
Sbjct: 325 YVEWTANRRMKSIGLKPTFDAPLSNNPLPWTEHWLSSRG 363


>gi|323333040|gb|EGA74442.1| Rnr2p [Saccharomyces cerevisiae AWRI796]
          Length = 306

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 18/232 (7%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER
Sbjct: 74  KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WAL++ Q            DAD  F + L   +   
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           EG++F   FA I  L +   M G+    + I RDE LH +F   +   +K +
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNK 290


>gi|261868068|ref|YP_003255990.1| ribonucleoside-diphosphate reductase subunit beta [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293389919|ref|ZP_06634253.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|261413400|gb|ACX82771.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|290950453|gb|EFE00572.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 329

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 136/320 (42%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
             ++ P +Y    E   +  +++W+ TE     D+  +++   ++D ER +I + +   +
Sbjct: 13  RFEIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDFRTH--ISDVERAVITKTMLAIS 70

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y +   PE           E  H   + +++  LGL+  E+F   R
Sbjct: 71  QIEVSV-KRFWGNLYNYFPKPEIEDVGGSFLESEIRHKDAYSFLLEKLGLN--EMFRNVR 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +  +I A+  +   + +             + Q+F+  L +F +  E +  ++ F  ++S
Sbjct: 128 QYKAIMARIEYMEAFMRK---------KDVSQQDFVLSLVMFSLFVEHISLFSQFVIMMS 178

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI + + ++ E P L+T EF  + + +  +A 
Sbjct: 179 FNKHKNLFKGISNAVEATSKEEEIHGRFGISLYHLLREEQPELFTDEFYAELKELAEQAF 238

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E A        G +  L+  + E Y+    N     +GLEP++  +        W   
Sbjct: 239 NAEKAILDWIFEDGELSFLSKATVENYIANRYNNSLVTLGLEPIYNISPAQLKETEWFDI 298

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 299 EILSTKETDFFNKRSTDYSK 318


>gi|215275539|sp|P0C8I1|RIR2_ASFP4 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
          Length = 327

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 77/330 (23%), Positives = 136/330 (41%), Gaps = 30/330 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   S    + P+++   W  Y    +  W   EV M  D+  W+    +   +R  
Sbjct: 2   EELLIENSHRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKSQREF 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            K+ L FF  ++ +V  N++    R +   E   +   QA +E VHS  +   + +L  D
Sbjct: 59  YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   +F+   + P I   A W  Q+     +                +  V +   EG
Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWMDPTKNSLG-------------ERLVGFAAVEG 165

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           + F   F  I  L   N M G+    ++I RDE +H +F   +I+      P       +
Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------E 219

Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           +    +L EA  L   + +    K      G +     QY+++  +  C  +  + ++K 
Sbjct: 220 RIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 279

Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
             NPFP M++  ++  ++ NFFE R T+YQ
Sbjct: 280 G-NPFPQMTKFFLNEVEKTNFFELRPTQYQ 308


>gi|190896526|gb|ACE96776.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 223

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 26/244 (10%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
            + + +   E R +   Q   E + S  +  ++ +   D  E   LF+    VP +  KA
Sbjct: 3   RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            WAL++              D  + F + L   +   EG++F   F  I  L +   M G
Sbjct: 63  QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +    + I RDE LH +F   + + ++ +         +++ + ++ +A  +E  +  + 
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N     QY++F+A+R    +G   ++    NPF  M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYYVA-NPFDGM-ELISLQGKTNFFEKR 219

Query: 340 VTEY 343
           V EY
Sbjct: 220 VGEY 223


>gi|332306884|ref|YP_004434735.1| Ribonucleoside-diphosphate reductase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174213|gb|AEE23467.1| Ribonucleoside-diphosphate reductase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 376

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 126/332 (37%), Gaps = 25/332 (7%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M      +V +    K+    +      +  W P EV +  D   ++    L++ E+ 
Sbjct: 16  EPMFFGNPVNVARYDQQKHSIFEKLIEKQISFFWRPEEVDVSKDRVDFQ---KLSESEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+   +  +A    +S PE   +    +F E +HS ++ +I+ +L  
Sbjct: 73  IFISNLKYQTLLDSIQGRSPNIAFLPIISIPELETWTETWSFFETIHSRSYTHILRNLFG 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS----------SPSFTTGTKDADQEFLQDLF 190
           D   +F    E   I  +A    +Y   L             +     ++          
Sbjct: 133 DPSSIFADIVENEQIKKRAADISKYYDDLIFYTQLWQTLGEGTHNINGEEHVVTMRSLKV 192

Query: 191 VFYVVF------EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
             ++        E + FY  FA   +      M G ++  + I RDE+LHL     ++N 
Sbjct: 193 KLFLCMNSVNALEAIRFYVSFACTFAFAERELMEGNSKIIRLISRDENLHLTSTQHILNL 252

Query: 245 IKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
                      E    ++Q++  +  +A   E  +A      G  +GLN     QY++FI
Sbjct: 253 WAKGKDDPEMAEIAIEYKQQATDIFLDAVNQEKEWAEYLFQNGSMIGLNKDILCQYVEFI 312

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           AN R   IGL   F    NP PWM+  ++   
Sbjct: 313 ANHRMSAIGLGQPFDIKNNPLPWMNNYLNSDN 344


>gi|90407600|ref|ZP_01215781.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp.
           CNPT3]
 gi|90311303|gb|EAS39407.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp.
           CNPT3]
          Length = 424

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/323 (22%), Positives = 138/323 (42%), Gaps = 18/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P +Y    E   +  +++W+ TE     D+  +K    L+  ER +IKR +   +
Sbjct: 107 RINLKPYEYPEILEYVDAIRHSYWIHTEFNFTSDIQDFK--VRLSHPEREVIKRTMLAIS 164

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       IY  +  PE        A  E  H   + +++  LGL++   F+   
Sbjct: 165 QIEVSV-KTFWGNIYTKMPKPEIGSVGATFAESEVRHHDAYSHLLEILGLNDE--FSKLE 221

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P I  +  +           +      + ++E+ + + +F +  E +  ++ F  I+S
Sbjct: 222 ENPDIMTRVRYL--------ESALKHANSEDNKEYSESILLFSLFIEHVSLFSQFLIIMS 273

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N + GI+   +   ++E LH NFGID+I  IK ENP  + +E+QQ  RT+  +A 
Sbjct: 274 FNKYKNMLKGISNVVEATSKEEQLHGNFGIDLIQIIKQENPSWFNEEYQQSVRTLCLQAF 333

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
             E         +G +  +     +++++   N+    I +E +F+  E       W  +
Sbjct: 334 KSESKIIDWIYAEGELDFIPKAQVKEFIKNRFNQSLQSIDIEKVFEIDEKLLEKTEWFDD 393

Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
            I   K  +FF  R   Y + ++
Sbjct: 394 EIIGTKHGDFFVKRSINYNKRSK 416


>gi|87120532|ref|ZP_01076426.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp.
           MED121]
 gi|86164175|gb|EAQ65446.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp.
           MED121]
          Length = 377

 Score =  163 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 137/337 (40%), Gaps = 28/337 (8%)

Query: 15  KRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           KR +   + M      +V +    K+    +      +  W P EV +  D   ++    
Sbjct: 9   KRFDSMKEPMFFGENVNVARYDQQKHPIFEKLIEKQLSFFWRPEEVDLSSDRKDFQH--- 65

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L   E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +
Sbjct: 66  LEAHEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPELETWIETWSFSETIHSRSYTH 125

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS------------------SPSFT 175
           II ++  + G +F+   E   IT +A    ++   L                        
Sbjct: 126 IIRNIVNEPGVVFDDITENTEITKRAESVSKWYDDLILLVGLYNTLGPGIHNVPGKGDVN 185

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              K   +     +    V+ E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 186 VNLKALKKALYLTMVSVNVL-EAIRFYVSFACSFAFAERTLMEGNAKIIKLIARDEALHL 244

Query: 236 NFGIDVINQIK--IENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N +    ++P +    KE + ++  +  EA   E  +A      G  +GLNA 
Sbjct: 245 TGTQHILNLMASGKDDPEMEDIAKECEDEAYQIFFEAAEQEKEWASYLFKDGSMIGLNAQ 304

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   IGL P F+   NP PW++  +
Sbjct: 305 ILGQYVEYITNIRMQAIGLLPTFETKHNPIPWINAWL 341


>gi|261404531|ref|YP_003240772.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10]
 gi|261280994|gb|ACX62965.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10]
          Length = 343

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 78/350 (22%), Positives = 147/350 (42%), Gaps = 20/350 (5%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +  I   E   N   + +    S +     ++    ++ Y     NHW+  E+PM  D  
Sbjct: 3   MQKIFNTEAP-NRSTRVIEGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMSKDAQ 61

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L  +E+   K N+   A  +S+     V  + R+ ++            +E V
Sbjct: 62  QF---PRLDPEEQRTFKINISLLAVLDSMQT-MFVSDVKRYFTDSSLEAISAIIGQQEVV 117

Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++ Y+++S+    ++ E+F  ++  P +  +  +     Q            +   +
Sbjct: 118 HNQSYSYVLSSIVSEQEQKEIFEYWKHDPVLLERNQFISNIYQNFRD--------NPSPQ 169

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V  ++ EG++FY+ FA   +L R  KM+  ++   YI RDE+ H  F  +V  Q
Sbjct: 170 SFFEAMVADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQ 229

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +  + P L TKE        +  A  LE  +AH T+     G++      Y+++IANRR 
Sbjct: 230 LLKDFPELNTKENIDYLYRTIDRAVELETNWAHYTLSN-VRGIDLNELSDYIKYIANRRI 288

Query: 305 HQIGLEPLFK-YTENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAELK 350
             +GLE  ++    N  PW    S+      + +FFE +   Y +  +  
Sbjct: 289 TMMGLEKAYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGDDN 338


>gi|304414248|ref|ZP_07395616.1| ribonucleotide reductase beta subunit [Candidatus Regiella
           insecticola LSR1]
 gi|304283462|gb|EFL91858.1| ribonucleotide reductase beta subunit [Candidatus Regiella
           insecticola LSR1]
          Length = 381

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 70/340 (20%), Positives = 128/340 (37%), Gaps = 25/340 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    KY    +      +  W P E+ +  D   ++   
Sbjct: 13  QNKNDQLKEPMFFGQSVNVARFDQQKYAIFEKLIEQQLSFFWRPEEIDVSQDRTDYQ--- 69

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L   E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 70  KLPPHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 129

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFV 191
           +II ++  D   +F+       I  +A     Y   L   + +     +       +   
Sbjct: 130 HIIRNIVNDPSLIFDDIVTNEEILKRAEDISAYYDDLIKMTSYYHLLGEGTHHINSETIT 189

Query: 192 FYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
             +                 E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 190 VNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHLT 249

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++            KE Q     +  +A   E  +A      G  +GLN   
Sbjct: 250 GTQHIINLMREGTDDPEMAEIAKECQNNCFELFKKAAEQEKEWATYLFRDGSMIGLNKDI 309

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             QY+++I N R   +GL   FK   NP PW++  +    
Sbjct: 310 LCQYIEYITNIRMQAVGLALPFKIRSNPIPWINAWLSSDN 349


>gi|88801652|ref|ZP_01117180.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter
           irgensii 23-P]
 gi|88782310|gb|EAR13487.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter
           irgensii 23-P]
          Length = 424

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 132/323 (40%), Gaps = 18/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P  Y    E   +  +++W+ TE     D+  +K+   L++ E+  IK  +   +
Sbjct: 107 RLNLKPYDYPALTEYVDAIRHSYWIHTEFNYTSDIQDFKAY--LSETEKSAIKNTMLAIS 164

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E          IY+ +  PE        A  E  H   + +++  LGL+    F   +
Sbjct: 165 QIEV-AVKTFWGDIYKKMPKPEIGAVGSTFAESEVRHHDAYSHLLEILGLNNE--FENLK 221

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           + P +  + N+           +      + ++EF + + +F +  E +  ++ F  I++
Sbjct: 222 KNPVMMRRVNYL--------EGALKNVKSEDNKEFSESIILFSLFIEHVSLFSQFLIIMA 273

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N + GI+   +   ++E +H +FGID+I  IK ENP  + ++     + M  EA 
Sbjct: 274 FNKHKNVLKGISNVVEATSKEEQIHGDFGIDIIKIIKEENPDWFDEDHSLMVQEMCEEAF 333

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
           + E         KG +  L     +++++   N+    IG+  +F+          W  +
Sbjct: 334 ISESKIIDWIFEKGELDFLPKNVIKEFIKNRFNKSLGSIGIAKIFEIDATLLAQTDWFDD 393

Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
            I   K  +FF  R   Y +  +
Sbjct: 394 EIIGTKHGDFFVKRSINYSKRTK 416


>gi|325103985|ref|YP_004273639.1| ribonucleotide reductase [Pedobacter saltans DSM 12145]
 gi|324972833|gb|ADY51817.1| ribonucleotide reductase [Pedobacter saltans DSM 12145]
          Length = 324

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 75/320 (23%), Positives = 130/320 (40%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    +   +   + W+ +E+    D   + S   L+ +E+  IKR+L   A
Sbjct: 7   RINYKPFEYPEVLDFTNAINKSFWVHSEIDFTADTQDFHSH--LSTNEKESIKRSLLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V  +    +Y HL  PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QIEVNV-KSFWGNLYNHLPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNNE--FEKVI 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+P I  +  +         S +      D  + +++ L +F ++ E +  ++ FA ILS
Sbjct: 122 EIPVIKKRIAY--------LSNALKDTKSDDKKAYIKSLILFTILIENVSLFSQFAIILS 173

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE LH N GI +IN+IK E P    +  +Q+   ++ E+ 
Sbjct: 174 FTRFQGVMKNVSNIIAWTSIDEQLHANAGIYIINKIKEEFPEYIDEAVEQEIYDIVTESI 233

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325
            +E          G    +N      +M++  +    QIG + L+  +E   +P  W  E
Sbjct: 234 NIEDEILGWIFENGDLEHINRRDLLNFMKYRIDVSLQQIGFKKLYNVSETEYSPMVWFEE 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I      +FF  R  EY +
Sbjct: 294 EIFANSLDDFFAKRPVEYTK 313


>gi|332974193|gb|EGK11127.1| ribonucleotide-diphosphate reductase beta subunit [Psychrobacter
           sp. 1501(2011)]
          Length = 377

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/342 (19%), Positives = 137/342 (40%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    K+    +      +  W P EV +  D   +    
Sbjct: 8   QTKNDALKEPMFFGQPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDRIDY---G 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+ +   NL +    +S+   +  + +   +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLSTHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-----------------SSPSFT 175
           +II ++  D   +F+   +   I  +A+    Y   L                 +     
Sbjct: 125 HIIRNIVNDPAVVFDDIMDNEHILQRASDIAHYYDELYQNSQLYSLFGPGTHMVNGEQKH 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              +   ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VDLRKLKKQLYLCLVAVNVL-EAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                +IN      ++P +    ++ +++S  +  +A   E  +A      G  +GLN  
Sbjct: 244 TSTQHMINILASGKDDPEMAEIAEDCREESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK 331
              QY+++I N R   +GL  +F  ++ NP PW++  +    
Sbjct: 304 ILCQYVEYITNLRMEAVGLPSIFPDSKSNPIPWINTWLSSDN 345


>gi|323337103|gb|EGA78359.1| Rnr2p [Saccharomyces cerevisiae Vin13]
          Length = 296

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 104/227 (45%), Gaps = 18/227 (7%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER
Sbjct: 74  KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E   LFN    +P I  KA WAL++ Q            DAD  F + L   +   
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           EG++F   FA I  L +   M G+    + I RDE LH +F    + 
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLFVR 285


>gi|308067265|ref|YP_003868870.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
           reductase small subunit) [Paenibacillus polymyxa E681]
 gi|305856544|gb|ADM68332.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide
           reductase small subunit) [Paenibacillus polymyxa E681]
          Length = 343

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 152/350 (43%), Gaps = 20/350 (5%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           L  I   E   N   + +    S +     ++    ++ Y     NHW+P E+PM  D +
Sbjct: 3   LQKIFNTEAP-NRSTRIIEGENSGILNWNDIRMPHMYKLYKVLLLNHWIPDEIPMSKDAS 61

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L  +E+   K N+G  A  +S+     V  + R+ ++            +E V
Sbjct: 62  QF---PVLDAEEQRTFKINIGLLAVLDSMQT-MFVGDVKRYFTDSSLEAISAIIGQQEVV 117

Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++ Y+++SL    ++ E+F  ++  P +  +  +     Q            + + +
Sbjct: 118 HNQSYSYVLSSLVSDQEQKEIFEYWKNDPVLLERNTFISDIYQEFRD--------EQNPQ 169

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V  ++ EG++FY+ FA   +L R  KM+  ++   YI RDE+ H  F  +V  Q
Sbjct: 170 TFFQAMVADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQ 229

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +  + P L TKE       M++ A  LE  +AH T+ K   G++      Y++++AN R 
Sbjct: 230 LLSDFPELNTKENTDYVYRMINRAVELETNWAHYTL-KEVRGIDLNELSDYIKYMANMRL 288

Query: 305 HQIGLEPLFK-YTENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAELK 350
             +G++  ++    N  PW    S+      + +FFE +   Y +  +  
Sbjct: 289 RLLGMDKAYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGDDN 338


>gi|93005945|ref|YP_580382.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter
           cryohalolentis K5]
 gi|92393623|gb|ABE74898.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Psychrobacter cryohalolentis K5]
          Length = 377

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 132/341 (38%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   N   + M      +V +    K+    +      +  W P EV +  D   +    
Sbjct: 8   QTPNNALTEPMFFGNPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDRMDF---G 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+ +   NL +    +S+   +  + +   +S PE   ++    F E +HS ++ 
Sbjct: 65  NLSSHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------------SSPSFTT 176
           +II ++  D   +F+   +   I  +A    +Y   L                 +    T
Sbjct: 125 HIIRNIINDPAIVFDDIMQNEHILGRAADIAKYYDDLYYSSSLYNLYGAGTHTINGKQIT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
               + ++ L    +   V E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 IDLKSLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++I           KE  ++S  +  +A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNLMRIGRDDPEMVDIAKECYEESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK 331
             QY+++I N R   +GL   F  ++ NP PW++  +    
Sbjct: 305 LCQYIEYITNLRMEAVGLPVAFPNSKSNPIPWINTWLSSDN 345


>gi|331653669|ref|ZP_08354670.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M718]
 gi|331048518|gb|EGI20594.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M718]
          Length = 449

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 81  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 137

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 138 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 197

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 198 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 257

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 258 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 316

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 317 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 376

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 377 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 413


>gi|239502693|ref|ZP_04662003.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
           baumannii AB900]
          Length = 309

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 97/321 (30%), Positives = 161/321 (50%), Gaps = 17/321 (5%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+K+ WA        NN W P  V M DD+A +   N L   +R M  + L F ++ +
Sbjct: 3   ISPMKHTWAKGILDRMENNTWFPHVVNMADDVASY---NRLNAADRFMFDKALAFLSNLD 59

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
            +  NNI   I +H+++PE    L RQA+EEA+H  ++  II ++ LD   ++  +    
Sbjct: 60  GIQFNNINQNIAKHVTSPEVSMCLSRQAWEEALHVKSYATIIETVSLDPMSVYMTFERDG 119

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
            +  K  + L+        S   G K + + F        V+ EG++F++GF     L  
Sbjct: 120 LLAQKNQFILK-------QSRLLGEKFSAEGFALSCVS-NVLLEGVYFFSGFLSFYLLAD 171

Query: 214 ANKMVGIAEQYQYIMRDES-LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
             +M+G A+  +YI RDE   HL+    +++ ++ EN  ++T+ F  K+  +   ++ +E
Sbjct: 172 KGEMLGSADMIRYIQRDEEGTHLDLFAHMLDTLRHENKDVFTQSFWNKALEVFLTSSEME 231

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDLKK 331
           I++      KG    N  + E Y++ +AN R  QI      +   +NPFPW+ +      
Sbjct: 232 ISWGKYIT-KGVT--NPKAIEDYIKHLANLRAEQIQAPFVPYPGVKNPFPWVEQFSKPNT 288

Query: 332 -EKNFFETRVTEYQQGAELKW 351
            EKNFFETRVT+Y+ G  L W
Sbjct: 289 SEKNFFETRVTDYKVGGALVW 309


>gi|331642864|ref|ZP_08343999.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H736]
 gi|331039662|gb|EGI11882.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H736]
          Length = 449

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 81  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 137

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 138 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 197

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 198 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 257

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 258 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 316

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 317 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 376

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 377 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 413


>gi|110806205|ref|YP_689725.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 5 str. 8401]
 gi|110615753|gb|ABF04420.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           flexneri 5 str. 8401]
 gi|281601680|gb|ADA74664.1| putative ribonucleotide reductase, beta subunit [Shigella flexneri
           2002017]
          Length = 453

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 85  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 141

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 142 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 201

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 202 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 261

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 262 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 320

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 321 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 380

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 381 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 417


>gi|315644971|ref|ZP_07898099.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453]
 gi|315279682|gb|EFU42984.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453]
          Length = 343

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/350 (21%), Positives = 147/350 (42%), Gaps = 20/350 (5%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +  I   E   N   + +    S +     ++    ++ Y     NHW+  E+PM  D  
Sbjct: 3   MQKIFNTEAP-NRSTRVIEGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMSKDAQ 61

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            + +   L  +E+   K N+   A  +S+     V  + R+ ++            +E V
Sbjct: 62  QFPT---LDSEEQRTFKINISLLAVLDSMQT-MFVSDVKRYFTDSSLEAISAIIGQQEVV 117

Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++ Y+++S+    ++ E+F  ++  P +  +  +     Q            +   +
Sbjct: 118 HNQSYSYVLSSIVSDQEQKEIFEYWKHDPVLLERNQFISDIYQNFRD--------NPSPQ 169

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  V  ++ EG++FY+ FA   +L R  KM+  ++   YI RDE+ H  F  +V  Q
Sbjct: 170 TFFEAMVADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQ 229

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +  + P L ++E        +  A  LE  +AH T+     G++      Y+++IANRR 
Sbjct: 230 LLKDFPELNSQENIDYLYRTIDRAVELETNWAHYTLSN-VRGIDLNELGDYIKYIANRRI 288

Query: 305 HQIGLEPLF-KYTENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAELK 350
             +GLE  +     N  PW    S+      + +FFE +   Y +  +  
Sbjct: 289 TMMGLEKAYQGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGDDN 338


>gi|327198722|emb|CCA61423.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
          Length = 395

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 136/382 (35%), Gaps = 68/382 (17%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P +Y   + K+     +HW+P EVPM DD+  W   N L D+++  +     FF   +
Sbjct: 10  YKPFQYEQFYNKWKVHERSHWLPAEVPMHDDVHDWN--NRLDDNQKKFLTNIFRFFTQGD 67

Query: 94  S-LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
             +        +      PE   ++   A  EAVH   + ++I +LG+ E   +  + E 
Sbjct: 68  VDVAGAYCSEYLPNFCETPEIAMFMCSVAAREAVHIDAYSHLIETLGMPES-TYREFLEY 126

Query: 153 PSITAKANWALQY----TQTLSSPSFTTGTKDA--------------------------- 181
             +  K ++  ++      +L   SF T                                
Sbjct: 127 HEMKEKQDYIKKFQHGNYGSLKDDSFMTKLGVCISMLVLVVLFALGVDVLVWFSSLLPAV 186

Query: 182 ---------------DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                           +     + +F    EGM  ++ F  +LS      M G+ +   +
Sbjct: 187 MLASSHIHRYRQRLIKEHIAAGIALFSGFTEGMQLFSSFTMLLSFPMNGLMKGMGQIVSW 246

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKE-----------FQQKSRTMLHEATLLEIAY 275
            + DE+ H +  I +      EN                   +   + +  E   LE  +
Sbjct: 247 SIVDETQHTDGMITLFKIFVDENTECRCNPILGCNCIRPDVLRDTVKKIALEMVRLEDEF 306

Query: 276 AHETMPKG-----FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDL 329
            +    +      F+ ++    +QY++FIAN+R   +  +  F   ++NP P    +I+ 
Sbjct: 307 INLAYDEYADDEVFMNISKTKLKQYIRFIANKRMEAMRYDHPFPEASDNPLPEFEIMINA 366

Query: 330 KKEKNFFETRVTEYQQGAELKW 351
               NFFE R T+Y +     W
Sbjct: 367 PINTNFFENRSTDYARTNN-DW 387


>gi|148244629|ref|YP_001219323.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326456|dbj|BAF61599.1| ribonucleoside-diphosphate reductase beta subunit [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 378

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 138/332 (41%), Gaps = 25/332 (7%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M    + +V +    K+    +      +  W P E+ +  D   +     L  +E+ 
Sbjct: 16  EPMFFGNTVNVARFDKQKFEIFEKLTEKQLSFFWRPEEIDVSKDKIDF---AKLLPNEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+ + +  +A    +S PE   ++   +F E +HS ++ +II ++  
Sbjct: 73  IFISNLQYQILLDSVQSRSPNIAFLPIVSLPELENWIETWSFSETIHSRSYTHIIRAIVN 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSF--------TTGTKDADQEFLQDL--- 189
           + G +F+   ++  I  +A    ++   L   +             +D +          
Sbjct: 133 EPGIVFDDIMKIDEIIQRAESVSKHYNELIKCTQAYLLHGIGKFKVQDKEILIDLYCLKK 192

Query: 190 -----FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 +   + E + FY  FA   +      M G A+  + I RDE+LHL     ++N 
Sbjct: 193 QLYLTIMSVNILEAVQFYVSFACSFAFAERKVMEGNAKIIRMIARDEALHLTGTQHILNL 252

Query: 245 IK--IENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
           +    ++P +    KE +++  TM  EA   E  +A      G  +GLNA   +QY+++I
Sbjct: 253 MSDGKDDPDMKKIAKECEKEVITMFKEACEQEKDWAEYLFRDGSMIGLNAKMLKQYLEYI 312

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            N R   + L P+F    NP PW++  +D   
Sbjct: 313 TNVRMKALNLSPVFDECINPLPWINHWLDSDN 344


>gi|227356095|ref|ZP_03840485.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus
           mirabilis ATCC 29906]
 gi|227163740|gb|EEI48652.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus
           mirabilis ATCC 29906]
          Length = 376

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 135/334 (40%), Gaps = 25/334 (7%)

Query: 16  RVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           R +   + M   +  +V +    KY    +      +  W P EV +  D   +   N L
Sbjct: 10  RNDQLQEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NAL 66

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
            D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ +I
Sbjct: 67  PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHI 126

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------TGT 178
           I ++  D   +F+   E   I  +A     Y   L + +                    T
Sbjct: 127 IRNIVNDPSVVFDDIVENKEILKRARDISSYYDELINLTNLYHMFGEGTHQIKGKTVEVT 186

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
               ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL   
Sbjct: 187 LRKLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGT 246

Query: 239 IDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
             ++N  +   ++P +     E +Q+   +  EA   E  +A     +G  +GLN     
Sbjct: 247 QHMLNLLRSGQDDPEMAEIAAECEQECYDLFVEAAEQEKEWAEYLFSEGSMIGLNKEILC 306

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           QY+++I N R   +GL+  FK   NP PW++  +
Sbjct: 307 QYVEYITNIRMQAVGLKLPFKARSNPIPWINAWL 340


>gi|295098106|emb|CBK87196.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 420

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 135/336 (40%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 52  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ--- 108

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 109 ALPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 168

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y   L                 +    T
Sbjct: 169 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMTSYWHLLGEGTHNVNGKTVT 228

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                 ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 229 VNLRTLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLT 288

Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN   
Sbjct: 289 GTQHMLNLLRSGADDPEMAAIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKDI 348

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 349 LCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 384


>gi|78486104|ref|YP_392029.1| ribonucleotide-diphosphate reductase subunit beta [Thiomicrospira
           crunogena XCL-2]
 gi|78364390|gb|ABB42355.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Thiomicrospira crunogena XCL-2]
          Length = 377

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 138/327 (42%), Gaps = 20/327 (6%)

Query: 18  NVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           N   + M      +V +    K+    +      +  W P E+ +  D   +     L +
Sbjct: 18  NALKEPMFFGQNVNVARYDQQKHPIFEKLIEKQLSFFWRPEEIDLSSDRGEY---ANLPE 74

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +II 
Sbjct: 75  HEKHVFISNLKYQTLLDSVQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIR 134

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD----ADQEFLQDL--- 189
           ++  D   +F+       I  +A     Y   L + +     ++     +  F +++   
Sbjct: 135 NIVSDPSLVFDDIVANEEIVKRAISVTVYYDKLINLTNRMYAEEIDLETNDAFRKEIKTA 194

Query: 190 ----FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN-- 243
                V   V E + FY  FA   S    + M G A+  + I RDE+LHL+    +IN  
Sbjct: 195 LFLTIVSVNVLEAIRFYVSFACSFSFAERSLMEGNAKIIKLIARDEALHLSGTQHLINIL 254

Query: 244 QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIA 300
               ++P +    KE ++K   +  EA   E  +A      G  +GLNA   + Y+++I 
Sbjct: 255 SEGKDDPEMMEIAKENEEKVYEIFREAAEQEKEWADYLFKDGSMIGLNASILKDYVEYIT 314

Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVI 327
           N R   I L P+F+   NP PWM+  +
Sbjct: 315 NTRIKAIKLNPIFENKSNPLPWMNNWL 341


>gi|197285594|ref|YP_002151466.1| ribonucleotide-diphosphate reductase subunit beta [Proteus
           mirabilis HI4320]
 gi|194683081|emb|CAR43612.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus
           mirabilis HI4320]
          Length = 376

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 135/334 (40%), Gaps = 25/334 (7%)

Query: 16  RVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           R +   + M   +  +V +    KY    +      +  W P EV +  D   +   N L
Sbjct: 10  RNDQLQEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NAL 66

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
            D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ +I
Sbjct: 67  PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHI 126

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------TGT 178
           I ++  D   +F+   E   I  +A     Y   L + +                    T
Sbjct: 127 IRNIVNDPSVVFDDIVENEEILKRARDISSYYDELINLTNLYHMFGEGTHQIKGKTVEVT 186

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
               ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL   
Sbjct: 187 LRKLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGT 246

Query: 239 IDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
             ++N  +   ++P +     E +Q+   +  EA   E  +A     +G  +GLN     
Sbjct: 247 QHMLNLLRSGQDDPEMAEIAAECEQECYDLFVEAAEQEKEWAEYLFSEGSMIGLNKEILC 306

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           QY+++I N R   +GL+  FK   NP PW++  +
Sbjct: 307 QYVEYITNIRMQAVGLKLPFKARSNPIPWINAWL 340


>gi|311278798|ref|YP_003941029.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
 gi|308747993|gb|ADO47745.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
          Length = 376

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/337 (21%), Positives = 139/337 (41%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+       I  +A    QY  TL   +                  T
Sbjct: 125 HIIRNIVNDPATVFDDIVTNEQIQKRAEGISQYYDTLIELTSYWHLLGEGTHSVNGKTIT 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              +D  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|149911236|ref|ZP_01899859.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp.
           PE36]
 gi|149805690|gb|EDM65689.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp.
           PE36]
          Length = 376

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/340 (20%), Positives = 131/340 (38%), Gaps = 25/340 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTPNDQLKEPMFFGQHVNVARFDQQKYEIFEKLIERQLSFFWRPEEVDVSKDRIDYQQ-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 66  -LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
           +II ++  D  E+F+       I  +A     Y   L + +            +      
Sbjct: 125 HIIRNIINDPSEVFDDIVANEEILKRAKDIAGYYDDLINATQQLHQLGEGTHVVNGETIV 184

Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         V   V E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VSQRAVKKKLYLAMVSVNVLEAVRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIK--IENPHLWTK--EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +    ++P +     E  Q+++ +  +A   E  +A      G  +GLN   
Sbjct: 245 STQHILNLMADGKDDPEMQEISIECFQETQKIFTDAAQQEKEWAEYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
              Y+++I N R   +GL   F+   NP PW++  +    
Sbjct: 305 LSDYIEYITNTRMAAVGLPKAFEVKSNPLPWINAWLISDN 344


>gi|288549884|ref|ZP_06390831.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317051|gb|EFC55989.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 420

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 130/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 52  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ--- 108

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 109 ALPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 168

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFV 191
           +II ++  D   +F+       I  +A     Y   L   + +     +           
Sbjct: 169 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMTSYWHLLGEGTHNVNGRTVT 228

Query: 192 FYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
             +                 E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 229 VNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLT 288

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++            +E +Q+   +  +A   E  +A      G  +GLN   
Sbjct: 289 GTQHMLNLLRSGTDDPEMAAIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKDI 348

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 349 LCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 384


>gi|149197800|ref|ZP_01874849.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera
           araneosa HTCC2155]
 gi|149139021|gb|EDM27425.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera
           araneosa HTCC2155]
          Length = 376

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/335 (22%), Positives = 129/335 (38%), Gaps = 25/335 (7%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   + M    + +V++    K+    +      +  W P EV +  D A +K    L  
Sbjct: 12  DPLKEPMFFGNNVNVSRYDQQKHPVFEQLIEKQLSFFWRPEEVDLSRDRADFK---KLPA 68

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +A    +S PE   ++   AF E +HS ++ +II 
Sbjct: 69  HEKHIFLSNLKYQTLLDSVQGRSPNVAFLPVISIPELETWVETWAFSETIHSRSYTHIIR 128

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-------------FTTGTKDADQ 183
           ++  D  E+F+      SI  +A+    Y  +                           +
Sbjct: 129 NIVNDPSEIFDDIVNNESIIQRASSVSHYYDSFIELQCYYNLLGEGTHMINDVPVVVNMR 188

Query: 184 EFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
           E  + LF+  V   V E + FY  FA   +      M G A+  + I RDE+LHL     
Sbjct: 189 ELKRRLFLTVVSVNVLEAIRFYVSFACSFAFAERAVMEGNAKIIKLIARDEALHLTGTQQ 248

Query: 241 VINQIKIENPHLWTKEFQQKS----RTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
           +I   +         E   +       +   A   E  +A      G  +GLNA     Y
Sbjct: 249 MIQIFREGKDDPEMAEIAAECEGQVYQIFSSAAEQEKEWAKFLFRDGSMIGLNADILGDY 308

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           +++I N R    G + +F  T+NP PWM+  +   
Sbjct: 309 VEYITNVRLKASGYKNVFPTTQNPLPWMNSWLSSD 343


>gi|148653376|ref|YP_001280469.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter
           sp. PRwf-1]
 gi|148572460|gb|ABQ94519.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Psychrobacter sp. PRwf-1]
          Length = 377

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/341 (20%), Positives = 128/341 (37%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    K+    +      +  W P EV +  D   +    
Sbjct: 8   QTKNDALKEPMFFGQPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDRIDY---G 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+ +   NL +    +S+   +  + +   +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLSTHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
           +II ++  D   +F+   E   I  +A+    Y   L   S            +      
Sbjct: 125 HIIRNIVNDPAVVFDDIMENEHILQRASDIAYYYDDLYQHSQLYSLFGPGTHIVNGEEKY 184

Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +   V E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VDLRKLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN +          E       +S  +  +A   E  +A      G  +GLN   
Sbjct: 245 STQHMINIMASGKDDPEMAEISAQCHNESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK 331
             QY+++I N R   +GL  +F  ++ NP PW++  +    
Sbjct: 305 LCQYVEYITNLRMEAVGLPGIFPESKSNPIPWINTWLSSDN 345


>gi|260772919|ref|ZP_05881835.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           metschnikovii CIP 69.14]
 gi|260612058|gb|EEX37261.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           metschnikovii CIP 69.14]
          Length = 377

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/342 (21%), Positives = 135/342 (39%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +  +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
           +II ++  D   +F+   E   I  +A     Y                    L+  +  
Sbjct: 125 HIIRNIINDPAVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRFGEGKHQLNDETIN 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
               +  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VSLTELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                +IN ++            +E +Q+   +  EA   E  +A      G  +GLN  
Sbjct: 244 TGTQHMINLLRNGLDDFTFLQIAEECKQQCFDLFKEAAEQEKEWAAYLFKDGSMIGLNRD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
              QY+++I N R   +GLEP +   T NP PW++  +    
Sbjct: 304 ILCQYVEYITNIRMQAVGLEPAYPKATSNPIPWINAWLSSDN 345


>gi|88859281|ref|ZP_01133921.1| ribonucleotide-diphosphate reductase beta subunit
           [Pseudoalteromonas tunicata D2]
 gi|88818298|gb|EAR28113.1| ribonucleotide-diphosphate reductase beta subunit
           [Pseudoalteromonas tunicata D2]
          Length = 376

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 132/332 (39%), Gaps = 25/332 (7%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           N   + M   +S +V++    K+    +      +  W P EV +  D   ++    L D
Sbjct: 12  NQLKEPMFFGQSVNVSRYDQQKHPIFEKLIEKQLSFFWRPEEVDVSKDRVDFE---NLPD 68

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +II 
Sbjct: 69  HEKHIFLSNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIR 128

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFL--------- 186
           ++      +F+   +   I  +A+   +Y   L   +       +   +           
Sbjct: 129 NVTKQPELIFDDIVDNDKIKERADEVTRYYDDLIEYTSIYNLYGEGKHQINDQTVVINLF 188

Query: 187 ------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
                     +   + E + FY  FA   +      M G A+  + I RDE+LHL+    
Sbjct: 189 ELKKKLYRAIMSVNILEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQH 248

Query: 241 VINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
           ++N ++             + +++S  M   A   E  +A      G  +GLN     QY
Sbjct: 249 MLNIMQDGQDDPEMAIVAAQLREESIEMFRTAAQQEKEWAEYLFKDGSMIGLNKDILCQY 308

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           +++I N R   +GL   F  T NP PW++  +
Sbjct: 309 VEYITNVRMSAVGLPQQFSITSNPIPWINSWL 340


>gi|324020907|gb|EGB90126.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 117-3]
          Length = 420

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 52  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 108

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 109 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 168

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 169 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 228

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 229 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 287

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 288 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 347

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 348 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 384


>gi|71065825|ref|YP_264552.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter
           arcticus 273-4]
 gi|71038810|gb|AAZ19118.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Psychrobacter arcticus 273-4]
          Length = 377

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 132/341 (38%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   N   + M      +V +    K+    +      +  W P EV +  D   +    
Sbjct: 8   QTPNNALTEPMFFGNPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSRDRMDY---G 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+ +   NL +    +S+   +  + +   +S PE   ++    F E +HS ++ 
Sbjct: 65  NLSSHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------------SSPSFTT 176
           +II ++  D   +F+   +   I  +A    +Y   L                 +    T
Sbjct: 125 HIIRNIINDPAIVFDDIMQNEHILGRAADIAKYYDDLYYSSSLYNLYGAGTHTINGKQIT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
               + ++ L    +   V E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VDLKSLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++I           KE  ++S  +  +A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNLMRIGRDDPEMVDIAKECYEESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK 331
             QY+++I N R   +GL   F  ++ NP PW++  +    
Sbjct: 305 LCQYIEYITNLRMEAVGLPVAFPKSKSNPIPWINTWLSSDN 345


>gi|324525159|gb|ADY48515.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum]
          Length = 240

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 106/252 (42%), Gaps = 26/252 (10%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            D+ +L        + P+KY   W  Y +A  + W   E+ +  D A W+    LTD ER
Sbjct: 9   SDEPLLAENPSRFVIFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWE---KLTDGER 65

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+       +  PE R +   Q   E VHS  +  +I +  
Sbjct: 66  FFISRVLSFFAASDGIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVHSEMYSKMIEAYI 125

Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  E    F+   +   I  KA+WAL++              D +  F   L  F  V 
Sbjct: 126 KDPKEQMVHFDAIHQFECIKKKADWALRWID------------DRNSPFPVRLIAFAAV- 172

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG+ F   FA I  L +   M G+    + I RDE LH +F   +         ++  K 
Sbjct: 173 EGIMFSGSFAAIFWLKKRGVMKGLTHSNELISRDEGLHRDFACLLYK-------YIKHKP 225

Query: 257 FQQKSRTMLHEA 268
            Q++   ++ EA
Sbjct: 226 SQEQVYEIIKEA 237


>gi|325066257|ref|ZP_08124930.1| Ribonucleoside-diphosphate reductase [Actinomyces oris K20]
          Length = 324

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 122/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   L + E+ M  R     
Sbjct: 15  NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       E F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                   +   V   + E   FY+GF  
Sbjct: 129 WSEENANLQRKARIILDYYRGDD---------------PEKRKVASTMLESFLFYSGFYA 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E+      E +  +  +L E
Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQAELKDYTFELLME 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E  Y  +      +GL     ++++++ AN+    +G E LF       NP    S
Sbjct: 234 LYDNEEQYTEDLY--DELGLT-EDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 323


>gi|284009345|emb|CBA76525.1| ribonucleoside-diphosphate reductase 1, beta subunit [Arsenophonus
           nasoniae]
          Length = 378

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 130/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P E+ +  D   ++   
Sbjct: 10  QTKNDQLQEPMFFGQPVNVARYDQQKYPIFEQLIEKQLSFFWRPEEIDVSRDRIDYQ--- 66

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 67  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 126

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFV 191
           +II ++  +   +F+       I  +A     Y   L   + +     +          +
Sbjct: 127 HIIRNIVNEPSIIFDDIVTNNEILKRAKDISAYYDDLIELTSYYHLLGEGSHTINGKSVI 186

Query: 192 FYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
             +                 E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 187 ISLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 246

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++            KE ++    +  +A   E  +A      G  +GLN   
Sbjct: 247 GTQHMLNLMRSGQDDPEMAIIAKECEEACYRLFVQAAEQEKEWAEYLFSGGSMIGLNKDI 306

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 307 LCQYIEYITNIRMQAVGLKLPFETRSNPIPWINAWL 342


>gi|91775577|ref|YP_545333.1| ribonucleotide-diphosphate reductase subunit beta [Methylobacillus
           flagellatus KT]
 gi|91709564|gb|ABE49492.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Methylobacillus flagellatus KT]
          Length = 377

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 130/334 (38%), Gaps = 26/334 (7%)

Query: 21  DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            + M   +  +V +    KY    +      +  W P EV +  D   ++   GL + E+
Sbjct: 15  KEPMFFGQPVNVARYDQQKYPVFEKLIEKQLSFFWRPEEVDVSQDRIDYQ---GLPEHEK 71

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II ++ 
Sbjct: 72  HIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWVETWAFSETIHSRSYTHIIRNIV 131

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSF----------------TTGTKDADQ 183
            D   +F+      +I A+A+    Y   L   +                  T      +
Sbjct: 132 SDPALIFDDIVRNENIVARASDISAYYDDLIHYTMLYSQLGKGDHVINGETKTVNLRELK 191

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L    +   + E + FY  FA   +      M G A+  + I RDE+LHL     ++N
Sbjct: 192 KLLYLCLMSVNILEAIRFYVSFACSFAFAERKVMEGNAKIIRLIARDEALHLTGTQHMLN 251

Query: 244 QIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
            ++             E Q +   M   A   E  +A      G  +GLN     QY+++
Sbjct: 252 IMRSGQDDPEFAGIASELQDECFEMFKRAAEQEKKWADYLFKDGSMIGLNRDILCQYVEY 311

Query: 299 IANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK 331
           I N R   +GL   F   + NP PW++  +    
Sbjct: 312 ITNNRMASVGLSAAFPNAKNNPIPWINTWLASDT 345


>gi|152997008|ref|YP_001341843.1| ribonucleotide-diphosphate reductase subunit beta [Marinomonas sp.
           MWYL1]
 gi|150837932|gb|ABR71908.1| Ribonucleoside-diphosphate reductase [Marinomonas sp. MWYL1]
          Length = 377

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 74/333 (22%), Positives = 132/333 (39%), Gaps = 26/333 (7%)

Query: 18  NVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   + M      +V +    K+    +      +  W P EV +  D   ++    L +
Sbjct: 12  DSTKEPMFFGENVNVARYDQQKHPIFEKLIEKQLSFFWRPEEVDLSTDRKDFQ---RLEE 68

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +II 
Sbjct: 69  HEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIR 128

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEFLQDL 189
           ++  D  ++F+       IT +A+   +Y   L             T            +
Sbjct: 129 NIVNDPTKIFDDIVTNEEITKRADSVSKYYDRLIEMVNLYNTMGMGTFDVPGRGSIEISM 188

Query: 190 ----------FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
                          V E + FY  FA   +      M G A+  + I RDE+LHL    
Sbjct: 189 PKLKKALYLTIASVNVLEAIRFYVSFACSFAFAERTLMEGNAKIIKLIARDEALHLTGTQ 248

Query: 240 DVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
            ++N +    ++P +     E Q + R +  EA   E  +A      G  +GLNA    Q
Sbjct: 249 HMLNLMASGKDDPEMAVIAAECQDEVRQIFIEAAEQEKEWATYLFKDGSMIGLNAQILGQ 308

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           Y+++I N R   +GLE  F    NP PW++  +
Sbjct: 309 YVEYITNVRMQAVGLETCFATKHNPIPWINAWL 341


>gi|329945141|ref|ZP_08293009.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328529340|gb|EGF56255.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 324

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 122/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   L + E+ M  R     
Sbjct: 15  NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       E F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                   +   V   + E   FY+GF  
Sbjct: 129 WSEENENLQRKARIILDYYRGDD---------------PEKRKVASTMLESFLFYSGFYA 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E+      E +  +  +L E
Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQAELKDYTFELLME 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E  Y  +      +GL     ++++++ AN+    +G E LF       NP    S
Sbjct: 234 LYDNEEQYTEDLY--DELGLT-EDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 323


>gi|326772780|ref|ZP_08232064.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
           viscosus C505]
 gi|326637412|gb|EGE38314.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
           viscosus C505]
          Length = 325

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   L + E+ M  R     
Sbjct: 16  NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       E F 
Sbjct: 70  TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                   +   V   + E   FY+GF  
Sbjct: 130 WSEENANLQRKARIILDYYRGDD---------------PEKRKVASTMLESFLFYSGFYA 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E+     +E +  +  +L E
Sbjct: 175 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQQELKDYTFDLLME 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E  Y  +      +GL     ++++++ AN+    +G E LF       NP    S
Sbjct: 235 LYDNEEQYTEDLY--DELGLT-EDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 291

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 324


>gi|42543283|pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
           Neutral Ph
 gi|42543284|pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
           Neutral Ph
 gi|42543506|pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide
           Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
 gi|42543507|pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide
           Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
          Length = 375

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 7   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 64  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F    NP PW++  +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWL 339


>gi|320531976|ref|ZP_08032874.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 171 str. F0337]
 gi|320135808|gb|EFW27858.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 171 str. F0337]
          Length = 324

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   L + E+ M  R     
Sbjct: 15  NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       E F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                   +   V   + E   FY+GF  
Sbjct: 129 WSEENENLQRKARIILDYYRGDD---------------PEKRKVASTMLESFLFYSGFYA 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E+     +E +  +  +L E
Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQQELKDYTFELLME 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E  Y  +      +GL     ++++++ AN+    +G E LF       NP    S
Sbjct: 234 LYDNEEQYTEDLY--DELGLT-EDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 323


>gi|156340310|ref|XP_001620415.1| hypothetical protein NEMVEDRAFT_v1g148226 [Nematostella vectensis]
 gi|156205304|gb|EDO28315.1| predicted protein [Nematostella vectensis]
          Length = 224

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 20/227 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L    D   + P+K+   WE Y     + W   E+ +  D+  W +   L +DE+  
Sbjct: 5   EPILQENKDRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDITDWNT--KLNEDEKYF 62

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+       +   E + +   Q   E +HS T+  +I +   D
Sbjct: 63  IKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           E E   LF+     P+I  KA WAL++ ++ S                 +  + +   EG
Sbjct: 123 EVEKDKLFHAIEVFPAIKRKAEWALKWIESDS---------------FAERLIAFAAVEG 167

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
           ++F   F  I  L +   M G+    + I RDE +H +F + + N  
Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGVHCDFAVHIHNHH 214


>gi|315126539|ref|YP_004068542.1| ribonucleotide-diphosphate reductase subunit beta
           [Pseudoalteromonas sp. SM9913]
 gi|315015053|gb|ADT68391.1| ribonucleotide-diphosphate reductase subunit beta
           [Pseudoalteromonas sp. SM9913]
          Length = 376

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 73/332 (21%), Positives = 136/332 (40%), Gaps = 25/332 (7%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           N   + M   ++ +V++    KY    +      +  W P EV +  D   ++    L D
Sbjct: 12  NQMQEPMFFGQTVNVSRYDQQKYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPD 68

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II 
Sbjct: 69  HEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPELETWIETWAFSETIHSRSYTHIIR 128

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQEFLQDLFVFYVV 195
           ++      +F+       I+ +A+    Y   L +  S      +   +   +  V  + 
Sbjct: 129 NVTQAPELIFDDIVSNDKISERADAVTTYYDDLINSVSLYNLYGEGKHDINGETVVVNLF 188

Query: 196 ---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
                           E + FY  FA   +      M G A+  + I RDE+LHL+    
Sbjct: 189 ELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQH 248

Query: 241 VIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
           ++N  Q   ++P +     + ++++  M  +A   E  +A      G  +GLN     QY
Sbjct: 249 ILNIMQDGKDDPEMAIVAAQCREEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNKHILCQY 308

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           +++I N R   IGL   F    NP PW++  +
Sbjct: 309 VEYITNARMTAIGLPAQFDNNSNPIPWINSWL 340


>gi|290508492|ref|ZP_06547863.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp.
           1_1_55]
 gi|289777886|gb|EFD85883.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp.
           1_1_55]
          Length = 405

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 134/329 (40%), Gaps = 27/329 (8%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M   +  +V +    KY    +      +  W P EV +  D   ++    L + E+ 
Sbjct: 45  EPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKH 101

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II ++  
Sbjct: 102 IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVN 161

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFTTGTKDADQ 183
           D   +F+       I  +A     Y  +L                    + T   ++  +
Sbjct: 162 DPATVFDDIVTNEQIQKRAEGISHYYDSLIEMTSYWHLLGEGTHTVNGKTVTVNLRELKK 221

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           +    L     + E + FY  FA   +      M G A+  + I RDE+LHL     ++N
Sbjct: 222 KLYLCLMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLTGTQHMLN 280

Query: 244 --QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
             +   ++P +    +E +Q+   +   A   E  +A      G  +GLN     QY+++
Sbjct: 281 LLRSGSDDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFRDGSMIGLNKDILCQYVEY 340

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           I N R   +GL+  F+   NP PW++  +
Sbjct: 341 ITNIRMQAVGLDLPFQTRSNPIPWINTWL 369


>gi|309379219|emb|CBX22176.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 384

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 136/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 14  PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 71  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 130

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   ITA+A     Y   L   +                  
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKLV 190

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
               ++  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 191 NVSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++            +E Q++   +  +A   E  +A      G  +GLN 
Sbjct: 250 LTGTQHMLNLMRSGVDDPEMAEIAEELQEECFKLFKKAAEQEKEWAAYLFKDGSMIGLNK 309

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 352


>gi|310639978|ref|YP_003944736.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           polymyxa SC2]
 gi|309244928|gb|ADO54495.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           polymyxa SC2]
          Length = 343

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 152/350 (43%), Gaps = 20/350 (5%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           L  I   E   N   + +    S +     ++    ++ Y     NHW+P E+PM  D +
Sbjct: 3   LQKIFNTEAP-NRSTRIIEGENSGILNWNDIRMPHMYKLYKVLLLNHWIPDEIPMSKDAS 61

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +     L  +E+   K N+G  A  +S+     V  + R+ ++            +E V
Sbjct: 62  QF---PMLDAEEQRTFKINIGLLAVLDSMQT-MFVGDVKRYFTDSSLEAISAIIGQQEVV 117

Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++ Y+++SL    ++ E+F  ++  P +  +  +     Q            + + +
Sbjct: 118 HNQSYSYVLSSLVSEQEQKEIFEYWKNDPVLLERNTFISAIYQEFRD--------EQNPQ 169

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V  ++ EG++FY+ FA   +L R  KM+  ++   YI RDE+ H  F  +V  Q
Sbjct: 170 TFFQAMVADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQ 229

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           +  + P L TKE       M++ A  LE  +AH T+ K   G++      Y++++AN R 
Sbjct: 230 LLADFPELNTKENMDYVYRMINRAVELETNWAHYTL-KEVRGIDLNELSDYIKYMANMRL 288

Query: 305 HQIGLEPLFK-YTENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAELK 350
             +G++  ++    N  PW    S+      + +FFE +   Y +  +  
Sbjct: 289 RLLGMDKAYEGVDINSMPWIKPFSDEALNATKTDFFEAKSRNYGKVGDDN 338


>gi|332534563|ref|ZP_08410398.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035983|gb|EGI72462.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 376

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 73/332 (21%), Positives = 136/332 (40%), Gaps = 25/332 (7%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           N   + M   ++ +V++    KY    +      +  W P EV +  D   ++    L D
Sbjct: 12  NQMQEPMFFGQTVNVSRYDQQKYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPD 68

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II 
Sbjct: 69  HEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWAFSETIHSRSYTHIIR 128

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQEFLQDLFVFYVV 195
           ++      +F+       I+ +A+   +Y   L +  S      +   E      +  + 
Sbjct: 129 NVTQAPELIFDDIVSNDKISERADAVTKYYDDLINSVSLYNLYGEGKHEINGKTVIINLF 188

Query: 196 ---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
                           E + FY  FA   +      M G A+  + I RDE+LHL+    
Sbjct: 189 ELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQH 248

Query: 241 VIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
           ++N  Q   ++P +     + + ++  M  +A   E  +A      G  +GLN     QY
Sbjct: 249 ILNIMQDGKDDPEMAIVAAQCRDEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNKHILCQY 308

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           +++I N R   IGL   F+   NP PW++  +
Sbjct: 309 VEYITNARMTAIGLPAQFENNSNPIPWINSWL 340


>gi|226327851|ref|ZP_03803369.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198]
 gi|225203555|gb|EEG85909.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198]
          Length = 376

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 136/334 (40%), Gaps = 25/334 (7%)

Query: 16  RVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           + +   + M   +  +V +    KY    +      +  W P EV +  D   +   N L
Sbjct: 10  KNDQLQEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NAL 66

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
            D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ +I
Sbjct: 67  PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHI 126

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------TGT 178
           I ++  D   +F+   E   I  +A     Y   L + +                    T
Sbjct: 127 IRNIVNDPSVVFDDIVENEEILKRARDISSYYDELINLTNLYHMYGEGEHQVKGKTVHVT 186

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
               ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL   
Sbjct: 187 LRKLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGT 246

Query: 239 IDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
             ++N  +   ++P +    +E +Q+   +  EA   E  +A     +G  +GLN     
Sbjct: 247 QHMLNLLRSGQDDPEMAEIAEECEQECYDLFVEAAEQEKEWAEYLFSEGSMIGLNKDILC 306

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           QY+++I N R   +GL+  FK   NP PW++  +
Sbjct: 307 QYVEYITNIRMQAVGLKLPFKARSNPIPWINAWL 340


>gi|33358114|pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
           Subunit, D84e Mutant
 gi|33358115|pdb|1PIM|B Chain B, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
           Subunit, D84e Mutant
 gi|33358116|pdb|1PIU|A Chain A, Oxidized Ribonucleotide Reductase R2-D84e Mutant
           Containing Oxo-Bridged Diferric Cluster
 gi|33358117|pdb|1PIU|B Chain B, Oxidized Ribonucleotide Reductase R2-D84e Mutant
           Containing Oxo-Bridged Diferric Cluster
 gi|42543285|pdb|1PIZ|A Chain A, Ribonucleotide Reductase R2 D84e Mutant Soaked With
           Ferrous Ions At Neutral Ph
 gi|42543286|pdb|1PIZ|B Chain B, Ribonucleotide Reductase R2 D84e Mutant Soaked With
           Ferrous Ions At Neutral Ph
          Length = 375

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 7   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    ES+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 64  ALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F    NP PW++  +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWL 339


>gi|162139926|ref|YP_339935.2| ribonucleotide-diphosphate reductase subunit beta
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 376

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 136/332 (40%), Gaps = 25/332 (7%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           N  ++ M   ++ +V++    KY    +      +  W P EV +  D   ++    L D
Sbjct: 12  NQMEEPMFFGQTVNVSRYDQQKYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPD 68

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II 
Sbjct: 69  HEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWAFSETIHSRSYTHIIR 128

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQEFLQDLFVFYVV 195
           ++      +F+       I+ +A+   +Y   L +  S      +   E      V  + 
Sbjct: 129 NVTQAPELIFDDIVSNDKISERADAVTKYYDDLINSVSLYNLYGEGKHEINGKSVVVNLF 188

Query: 196 ---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
                           E + FY  FA   +      M G A+  + I RDE+LHL+    
Sbjct: 189 ELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQH 248

Query: 241 VIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
           ++N  Q   ++P +     + + ++  M  +A   E  +A      G  +GLN     QY
Sbjct: 249 ILNIMQDGKDDPEMAIVAAQCRDEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNKHILCQY 308

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           +++I N R   IG    FK   NP PW++  +
Sbjct: 309 VEYITNARMTAIGFPAQFKNNSNPIPWINSWL 340


>gi|119472403|ref|ZP_01614521.1| ribonucleotide-diphosphate reductase beta subunit [Alteromonadales
           bacterium TW-7]
 gi|119444925|gb|EAW26223.1| ribonucleotide-diphosphate reductase beta subunit [Alteromonadales
           bacterium TW-7]
          Length = 376

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 73/332 (21%), Positives = 135/332 (40%), Gaps = 25/332 (7%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           N   + M   ++ +V++    KY    +      +  W P EV +  D   ++    L +
Sbjct: 12  NQMQEPMFFGQTVNVSRYDQQKYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPE 68

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II 
Sbjct: 69  HEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPELETWIETWAFSETIHSRSYTHIIR 128

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQEFLQDLFVFYVV 195
           ++      +F+       I+ +A+    Y   L +  S      +   E      V  + 
Sbjct: 129 NVTQSPELIFDDIVSNDKISERADAVTTYYDDLINSVSLYNLYGEGKHEINGKTVVVNLF 188

Query: 196 ---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
                           E + FY  FA   +      M G A+  + I RDE+LHL+    
Sbjct: 189 ELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQH 248

Query: 241 VIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
           ++N  Q   ++P +     + + ++  M  +A   E  +A      G  +GLN     QY
Sbjct: 249 ILNIMQDGKDDPEMAIVAAQCRDEAIKMFVQAAEQEKEWAEYLFKDGSMIGLNKHILCQY 308

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           +++I N R   IGL   F+   NP PW++  +
Sbjct: 309 VEYITNARMTAIGLPAQFENNSNPIPWINSWL 340


>gi|237785987|ref|YP_002906692.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758899|gb|ACR18149.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 336

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 133/370 (35%), Gaps = 53/370 (14%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M     ++P++ G    N  D+ +  A  D N +   K    W+       N W+P +VP
Sbjct: 1   MKKTNAITPVRWGTNGNN-HDRPI--AAIDWNTIPDDKDQEVWD---RLTGNFWLPEKVP 54

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +D+  W +   L + E+    R        +++      +++      P         
Sbjct: 55  LSNDIKSWGT---LNELEQRTTMRVFTGLTMLDTIQGTVGAVSLIPDALTPHEEAVYTNI 111

Query: 121 AFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
           AF E+VH+ ++  I  +L       + F    E  ++  KA   L Y +           
Sbjct: 112 AFMESVHARSYSSIFMTLSSTPEINDAFRWSEENENLQDKARIVLDYYE----------- 160

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
              D  F + +     + E   FY+GF   +      K+   A+  + I+RDE++H  + 
Sbjct: 161 --GDNPFKRKVA--STLLESFLFYSGFYLPMYWSSHGKLTNTADVIRLIIRDEAVHGYYI 216

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
                + +           ++ +  +L+E    E  Y  +      +G      ++++++
Sbjct: 217 GYKYQRGQEALTQSERDGLKEYTFDLLYELYDNETQYTEDLY--DELGWT-EDVKRFLRY 273

Query: 299 IANRRCHQIGLEPLFKYTE-----------NPFPWMSEVIDLKKEKNFFETRVTEYQQG- 346
            AN+  + +G E LF   E           NP           +  +FF    + Y  G 
Sbjct: 274 NANKALNNLGYEALFPADETRVSPAIISSLNP--------GADENHDFFSGSGSSYVIGK 325

Query: 347 ----AELKWD 352
                +  WD
Sbjct: 326 AESTTDEDWD 335


>gi|227496669|ref|ZP_03926945.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
           urogenitalis DSM 15434]
 gi|226833817|gb|EEH66200.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
           urogenitalis DSM 15434]
          Length = 324

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 122/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L+  K    W+       N W+P +VP+ +D+  W +   L + E+ M  R     
Sbjct: 15  NWNRLVDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       E F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                   +   V   + E   FY+GF  
Sbjct: 129 WSEENENLQRKAKIILDYYRGDD---------------PEKRKVASTMLESFLFYSGFYA 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E+      E +  +  +L E
Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPQRQAELKDYTFDLLME 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E  Y  +      +GL     ++++++ AN+    +G E LF       NP    S
Sbjct: 234 LYDNEEQYTEDLY--DELGLT-EDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGTAEATEDEDWD 323


>gi|261400675|ref|ZP_05986800.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           lactamica ATCC 23970]
 gi|269209585|gb|EEZ76040.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           lactamica ATCC 23970]
          Length = 377

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 132/342 (38%), Gaps = 26/342 (7%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 7   PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 64  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLF 190
            +II ++  D   +F+   E   ITA+A     Y   L   + +     +        L 
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKLV 183

Query: 191 VFYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              +               V E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++             E Q +   +  +A   E  +A      G  +GLN  
Sbjct: 244 TSTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKE 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
              QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 304 ILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 345


>gi|221134587|ref|ZP_03560892.1| ribonucleotide-diphosphate reductase subunit beta [Glaciecola sp.
           HTCC2999]
          Length = 376

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 128/332 (38%), Gaps = 25/332 (7%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M      +V +    K+    +      +  W P EV +  D   ++   GL+D E+ 
Sbjct: 16  EPMFFGNPVNVARYDQQKHAIFEKLIEKQISFFWRPEEVDVSKDRMDFQ---GLSDAEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +I+ +L  
Sbjct: 73  IFISNLKYQTLLDSVQGRSPNIALLPIVSLPELETWIETWSFFETIHSRSYTHILRNLFT 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA--------DQEFLQD---- 188
           D   +F    E   I  +A    +Y   L   +    T+                     
Sbjct: 133 DPSNIFEDIVENEEIKRRAADISKYYDDLIFATQLWQTQGEGTHEVNGETHIINMRELKK 192

Query: 189 ----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                       E + FY  FA   +      M G ++  + I RDE+LHL     V+N 
Sbjct: 193 KLYLCMNSVNALEAIRFYVSFACTFAFAERELMEGNSKIIRLIARDENLHLTSTQHVLNL 252

Query: 245 IKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
                         KE +Q++R +   A   E  +A      G  +GLN      Y+++I
Sbjct: 253 WAKGKDDPEMAEIAKECEQEARDIFLNAVQQEKEWAAFLFNNGSMIGLNEEILCSYVEYI 312

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           AN+R   IGL   F  + NP PWM+  ++   
Sbjct: 313 ANQRMAAIGLGQPFDVSSNPLPWMNNYLNSDN 344


>gi|15616797|ref|NP_240009.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219681552|ref|YP_002467937.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|219682108|ref|YP_002468492.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471235|ref|ZP_05635234.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|11134533|sp|P57275|RIR2_BUCAI RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|25285834|pir||G84950 ribonucleoside-diphosphate reductase (EC 1.17.4.1) nrdB [imported]
           - Buchnera sp. (strain APS)
 gi|10038860|dbj|BAB12895.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219621841|gb|ACL29997.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
           aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624395|gb|ACL30550.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311087074|gb|ADP67154.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 376

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 71/340 (20%), Positives = 132/340 (38%), Gaps = 25/340 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ N   + M   +  ++ +    KY    +      +  W P E+ +  D   ++   
Sbjct: 8   KKKNNQLKEPMFFGQPVNIARYDQQKYKIFEQLIEKQLSFFWRPEEIDLSRDRIDFQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D+E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLPDNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIISIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFV 191
           +II ++      +F+      +I  +A     Y   L + + +     +           
Sbjct: 125 HIIRNIVNCPSLVFDDIISNKNIYDRAQNISIYYDELINLTSYWHLLGEGIHLINGKKIH 184

Query: 192 FYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
             +               V E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 INLRFLKKRLYLCLISVNVLEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244

Query: 237 FGIDV----INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +     N    EN      E ++++  +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNLLSNIKNNENMEDVVLECKEEAINIFISAAQQEKKWASYLFKSGSMLGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
             QY+++I N R H IG +  FK   NP PW+++ +    
Sbjct: 305 LCQYIEYITNIRMHAIGFKMPFKKQSNPIPWINDWLTSDN 344


>gi|161582009|ref|NP_230900.2| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae
           O1 biovar El Tor str. N16961]
 gi|255745652|ref|ZP_05419600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholera CIRS 101]
 gi|262159072|ref|ZP_06030184.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae INDRE 91/1]
 gi|262169430|ref|ZP_06037122.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae RC27]
 gi|262191406|ref|ZP_06049594.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae CT 5369-93]
 gi|255736727|gb|EET92124.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholera CIRS 101]
 gi|262022243|gb|EEY40952.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae RC27]
 gi|262029257|gb|EEY47909.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae INDRE 91/1]
 gi|262032695|gb|EEY51245.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae CT 5369-93]
 gi|327483944|gb|AEA78351.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Vibrio cholerae LMA3894-4]
          Length = 377

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 136/341 (39%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +  +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------T 176
           +II ++  D   +F+   E   I  +A     Y   L   +                  T
Sbjct: 125 HIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIELTNDYHRYGEGQHQINGETIT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            +    ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VSLKELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++            +E +Q+S  +  EA   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
             QY+++I N R   +GLEP +   T NP PW++  +    
Sbjct: 305 LCQYVEYITNIRMQAVGLEPAYPAATNNPIPWINAWLSSDN 345


>gi|254493923|ref|ZP_05107094.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae 1291]
 gi|260440303|ref|ZP_05794119.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae DGI2]
 gi|268594982|ref|ZP_06129149.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae 35/02]
 gi|268596639|ref|ZP_06130806.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae FA19]
 gi|268599210|ref|ZP_06133377.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae MS11]
 gi|268601557|ref|ZP_06135724.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID18]
 gi|268603896|ref|ZP_06138063.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID1]
 gi|268682359|ref|ZP_06149221.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID332]
 gi|268684517|ref|ZP_06151379.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686827|ref|ZP_06153689.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043595|ref|ZP_06569311.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae DGI2]
 gi|293398906|ref|ZP_06643071.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           gonorrhoeae F62]
 gi|59717937|gb|AAW89342.1| putative ribonucleoside diphosphate reductase I beta chain
           [Neisseria gonorrhoeae FA 1090]
 gi|226512963|gb|EEH62308.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae 1291]
 gi|268548371|gb|EEZ43789.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae 35/02]
 gi|268550427|gb|EEZ45446.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae FA19]
 gi|268583341|gb|EEZ48017.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae MS11]
 gi|268585688|gb|EEZ50364.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID18]
 gi|268588027|gb|EEZ52703.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID1]
 gi|268622643|gb|EEZ55043.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID332]
 gi|268624801|gb|EEZ57201.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627111|gb|EEZ59511.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012058|gb|EFE04047.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae DGI2]
 gi|291610320|gb|EFF39430.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           gonorrhoeae F62]
          Length = 384

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 134/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 14  PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 71  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWVETWSFSETIHSRSY 130

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   ITA+A     Y   L   +                  
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPV 190

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T   +   ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 191 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E Q +   +  +A   E  +A      G  +GLN 
Sbjct: 250 LTGTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 309

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 352


>gi|161572976|ref|YP_207754.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae FA 1090]
 gi|194098862|ref|YP_002001926.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae NCCP11945]
 gi|239999147|ref|ZP_04719071.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae 35/02]
 gi|240013945|ref|ZP_04720858.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae DGI18]
 gi|240016387|ref|ZP_04722927.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae FA6140]
 gi|240080506|ref|ZP_04725049.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae FA19]
 gi|240113126|ref|ZP_04727616.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae MS11]
 gi|240115882|ref|ZP_04729944.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae PID18]
 gi|240118180|ref|ZP_04732242.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae PID1]
 gi|240121514|ref|ZP_04734476.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae PID24-1]
 gi|240123728|ref|ZP_04736684.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae PID332]
 gi|240125919|ref|ZP_04738805.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae SK-92-679]
 gi|240128431|ref|ZP_04741092.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae SK-93-1035]
 gi|193934152|gb|ACF29976.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           gonorrhoeae NCCP11945]
          Length = 377

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 134/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 7   PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 64  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWVETWSFSETIHSRSY 123

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   ITA+A     Y   L   +                  
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPV 183

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T   +   ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E Q +   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 303 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 345


>gi|251792578|ref|YP_003007304.1| ribonucleoside-diphosphate reductase subunit beta [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533971|gb|ACS97217.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           aphrophilus NJ8700]
          Length = 329

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 133/320 (41%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
             ++ P +Y    E   +  +++W+ TE     D+  +++   ++D ER +I + +   +
Sbjct: 13  RFEIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDFRTH--ISDVERAVITKTMLAIS 70

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y +   PE           E  H   + +++  LGL+  E+F   R
Sbjct: 71  QIEVSV-KRFWGNLYNYFPKPEIEDVGGSFLESEIRHKDAYSFLLEKLGLN--EMFLNVR 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +  +I A+  +   + +             + Q+F+  L +F +  E +  ++ F  ++S
Sbjct: 128 QYKAIMARIEYMEAFMRR---------KDVSQQDFVLSLIMFSLFVEHISLFSQFVIMMS 178

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI + + ++ E P L+T  F  + + +  +A 
Sbjct: 179 FNKHKNLFKGISNAIEATSKEEEIHGRFGITLYSILREEQPELFTDAFFTELKELADQAF 238

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E    +     G +  L+  + E Y+    N     +GLEP +           W   
Sbjct: 239 TAEKEILNWIFEDGELDFLSKATVENYIANRYNNSLQALGLEPAYNINPEQLKETEWFDI 298

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 299 EILSTKETDFFNKRSTDYSK 318


>gi|229505158|ref|ZP_04394668.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae BX 330286]
 gi|229511170|ref|ZP_04400649.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae B33]
 gi|229515628|ref|ZP_04405087.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae TMA 21]
 gi|229518289|ref|ZP_04407733.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae RC9]
 gi|229521368|ref|ZP_04410787.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae TM 11079-80]
 gi|229525854|ref|ZP_04415259.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae bv. albensis VL426]
 gi|229529665|ref|ZP_04419055.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae 12129(1)]
 gi|229608178|ref|YP_002878826.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae
           MJ-1236]
 gi|229333439|gb|EEN98925.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae 12129(1)]
 gi|229339435|gb|EEO04452.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae bv. albensis VL426]
 gi|229341466|gb|EEO06469.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae TM 11079-80]
 gi|229345004|gb|EEO09978.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae RC9]
 gi|229347397|gb|EEO12357.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae TMA 21]
 gi|229351135|gb|EEO16076.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae B33]
 gi|229357381|gb|EEO22298.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae BX 330286]
 gi|229370833|gb|ACQ61256.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           cholerae MJ-1236]
          Length = 381

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 136/341 (39%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +  +V +    KY    +      +  W P EV +  D   +    
Sbjct: 12  QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 68

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 69  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 128

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------T 176
           +II ++  D   +F+   E   I  +A     Y   L   +                  T
Sbjct: 129 HIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIELTNDYHRYGEGQHQINGETIT 188

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            +    ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 189 VSLKELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 248

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++            +E +Q+S  +  EA   E  +A      G  +GLN   
Sbjct: 249 GTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 308

Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
             QY+++I N R   +GLEP +   T NP PW++  +    
Sbjct: 309 LCQYVEYITNIRMQAVGLEPAYPAATNNPIPWINAWLSSDN 349


>gi|297250515|ref|ZP_06864465.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296838835|gb|EFH22773.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 377

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 134/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 7   PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 64  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   ITA+A     Y   L   +                  
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPV 183

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T   +   ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E Q +   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 303 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 345


>gi|241760495|ref|ZP_04758588.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           flavescens SK114]
 gi|241318999|gb|EER55501.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           flavescens SK114]
          Length = 377

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 131/341 (38%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +    
Sbjct: 8   KTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFV 191
           +II ++  D   +F+   +   I A+A     Y   L   + +     +        L  
Sbjct: 125 HIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYTQYYNLLGEGSHNIGGKLVT 184

Query: 192 FYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
             +               V E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++             E Q +   +  +A   E  +A      G  +GLN   
Sbjct: 245 STQHMLNLMRAGADDPEMAEIAVELQDECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKEI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
             QY+++I N R   +GL   F+  T+NP PW++  +    
Sbjct: 305 LAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 345


>gi|282600304|ref|ZP_05973774.2| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rustigianii DSM 4541]
 gi|282565783|gb|EFB71318.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rustigianii DSM 4541]
          Length = 380

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 136/336 (40%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +  +V +    KY    +      +  W P EV +  D   +   N
Sbjct: 12  QKKNDQLQEPMFFGQPVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---N 68

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 69  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYT 128

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQEFLQDLFV 191
           +II ++  D   +F+   E   I  +A     Y   L    ++     +    F     V
Sbjct: 129 HIIRNIVNDPAIIFDDIVENEEILKRAKDISAYYDKLIEMTNYYHMFGEGTHTFGGKQIV 188

Query: 192 FYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
             +                 E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 189 VSLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 248

Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +   ++P +     E +++   +  +A   E  +A     +G  +GLN   
Sbjct: 249 GTQHMLNLLRSGQDDPEMAEIAAECEEQCYQLFVDAAEQEKEWAEYLFSEGSMIGLNKEI 308

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 309 LCQYVEYITNIRMQAVGLKLPFEARSNPIPWINAWL 344


>gi|121590730|ref|ZP_01678061.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           2740-80]
 gi|147674333|ref|YP_001216820.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae
           O395]
 gi|153212320|ref|ZP_01948108.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           1587]
 gi|153801907|ref|ZP_01956493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MZO-3]
 gi|153823603|ref|ZP_01976270.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           B33]
 gi|153827294|ref|ZP_01979961.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MZO-2]
 gi|153829732|ref|ZP_01982399.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           623-39]
 gi|227081427|ref|YP_002809978.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           M66-2]
 gi|254291706|ref|ZP_04962493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           AM-19226]
 gi|254848379|ref|ZP_05237729.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10]
 gi|297578847|ref|ZP_06940775.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae
           RC385]
 gi|298498653|ref|ZP_07008460.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MAK 757]
 gi|9655738|gb|AAF94414.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           O1 biovar El Tor str. N16961]
 gi|121547411|gb|EAX57522.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           2740-80]
 gi|124116698|gb|EAY35518.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           1587]
 gi|124122552|gb|EAY41295.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MZO-3]
 gi|126518882|gb|EAZ76105.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           B33]
 gi|146316216|gb|ABQ20755.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           O395]
 gi|148874766|gb|EDL72901.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           623-39]
 gi|149738785|gb|EDM53127.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MZO-2]
 gi|150422390|gb|EDN14350.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           AM-19226]
 gi|227009315|gb|ACP05527.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           M66-2]
 gi|227013172|gb|ACP09382.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           O395]
 gi|254844084|gb|EET22498.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10]
 gi|297536441|gb|EFH75274.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae
           RC385]
 gi|297542986|gb|EFH79036.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
           MAK 757]
          Length = 389

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 136/341 (39%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +  +V +    KY    +      +  W P EV +  D   +    
Sbjct: 20  QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 76

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 77  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 136

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------T 176
           +II ++  D   +F+   E   I  +A     Y   L   +                  T
Sbjct: 137 HIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIELTNDYHRYGEGQHQINGETIT 196

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            +    ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 197 VSLKELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 256

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++            +E +Q+S  +  EA   E  +A      G  +GLN   
Sbjct: 257 GTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 316

Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
             QY+++I N R   +GLEP +   T NP PW++  +    
Sbjct: 317 LCQYVEYITNIRMQAVGLEPAYPAATNNPIPWINAWLSSDN 357


>gi|218768312|ref|YP_002342824.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           meningitidis Z2491]
 gi|121052320|emb|CAM08650.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           meningitidis Z2491]
 gi|261392428|emb|CAX49973.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
           reductase) [Neisseria meningitidis 8013]
          Length = 377

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +  ++ M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 7   PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 64  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   ITA+A     Y   L   +                  
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPI 183

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T   +   ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E Q +   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 303 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 345


>gi|262171721|ref|ZP_06039399.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           mimicus MB-451]
 gi|261892797|gb|EEY38783.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           mimicus MB-451]
          Length = 377

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 136/342 (39%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +  +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
           +II ++  D   +F+   E   I  +A     Y                    ++  +  
Sbjct: 125 HIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVN 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              +D  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VSMRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                +IN ++            +E +Q+S  +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
              QY+++I N R   +GLEP +     NP PW++  +    
Sbjct: 304 ILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWINAWLSSDN 345


>gi|319410557|emb|CBY90925.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
           reductase) [Neisseria meningitidis WUE 2594]
 gi|325208250|gb|ADZ03702.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis NZ-05/33]
          Length = 384

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +  ++ M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 14  PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 71  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 130

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   ITA+A     Y   L   +                  
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPI 190

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T   +   ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 191 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E Q +   +  +A   E  +A      G  +GLN 
Sbjct: 250 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 309

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 352


>gi|258624428|ref|ZP_05719375.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
           VM603]
 gi|258583275|gb|EEW08077.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
           VM603]
          Length = 381

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 136/342 (39%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +  +V +    KY    +      +  W P EV +  D   +    
Sbjct: 12  QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 68

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 69  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 128

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
           +II ++  D   +F+   E   I  +A     Y                    ++  +  
Sbjct: 129 HIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVN 188

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              +D  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 189 VSMRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 247

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                +IN ++            +E +Q+S  +  +A   E  +A      G  +GLN  
Sbjct: 248 TGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKD 307

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
              QY+++I N R   +GLEP +     NP PW++  +    
Sbjct: 308 ILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWINAWLSSDN 349


>gi|332671991|ref|YP_004454999.1| ribonucleoside-diphosphate reductase [Cellulomonas fimi ATCC 484]
 gi|332341029|gb|AEE47612.1| Ribonucleoside-diphosphate reductase [Cellulomonas fimi ATCC 484]
          Length = 326

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 134/351 (38%), Gaps = 37/351 (10%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
               ++ + D+    +  + N+L   K    W+       N W+P +VP+ +D+  W + 
Sbjct: 2   TPTGKLKLIDR---VSAINWNRLEDEKDAEVWD---RLVGNFWLPEKVPVSNDIQSWAT- 54

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             LT++E+ +  R        +++      +++      P         AF E+VH+ ++
Sbjct: 55  --LTEEEKTLTMRVFTGLTLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSY 112

Query: 132 QYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
             I ++L       E F    E  ++  KA   ++Y +  S                   
Sbjct: 113 SSIFSTLCSTREIDEAFRWSEENVNLQRKAEIVMKYYKGDS---------------PLKR 157

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +   + 
Sbjct: 158 KVASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKL 217

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                +E +  +  +L E    E+ Y  +      VGL     ++++++ AN+    +G 
Sbjct: 218 SPEERQELKDYTFELLFELYDNEVEYTQDLYDG--VGLT-EDVKKFLRYNANKALMNLGY 274

Query: 310 EPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
           E LF   E   NP    +   +  +  +FF    + Y  G  +      WD
Sbjct: 275 EALFPRDETDVNPAILSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 325


>gi|332278613|ref|ZP_08391026.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
 gi|332100965|gb|EGJ04311.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
          Length = 420

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 52  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 108

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 109 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 168

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 169 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 228

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 229 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 287

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 288 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 347

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 348 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 384


>gi|262165506|ref|ZP_06033243.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           mimicus VM223]
 gi|262025222|gb|EEY43890.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           mimicus VM223]
          Length = 377

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 136/342 (39%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +  +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
           +II ++  D   +F+   E   I  +A     Y                    ++  +  
Sbjct: 125 HIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVN 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              +D  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 ISMRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                +IN ++            +E +Q+S  +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
              QY+++I N R   +GLEP +     NP PW++  +    
Sbjct: 304 ILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWINAWLSSDN 345


>gi|290473788|ref|YP_003466662.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus
           bovienii SS-2004]
 gi|289173095|emb|CBJ79868.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus
           bovienii SS-2004]
          Length = 376

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 132/334 (39%), Gaps = 25/334 (7%)

Query: 16  RVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           + N   + M   +  +V +    KY    +      +  W P EV +  D   +   N L
Sbjct: 10  KNNQLQEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NAL 66

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
            D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ +I
Sbjct: 67  PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWIETWSFSETIHSRSYTHI 126

Query: 135 ITSLGLDEGELFNMYREVPSITAKAN----------WALQYTQTLSSPSFTTGTKDADQE 184
           I ++  D   +F+       I  +A               Y   L   ++    K+    
Sbjct: 127 IRNIVNDPAIVFDDIVANEQILKRAKDISGYYDVLIEMTNYYHQLGEGTYNVAGKNITVS 186

Query: 185 FL------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                       +     E + FY  FA   +      M G A+  + I RDE+LHL   
Sbjct: 187 LRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGT 246

Query: 239 IDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
             ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN     
Sbjct: 247 QHMLNLLRSGQDDPEMAEIARECEQQCYDLFVQAAEQEKEWADYLFKDGSMIGLNKDILC 306

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 307 QYVEYITNIRMQAVGLKLPFEARSNPIPWINAWL 340


>gi|261364564|ref|ZP_05977447.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           mucosa ATCC 25996]
 gi|288567131|gb|EFC88691.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           mucosa ATCC 25996]
          Length = 384

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 137/342 (40%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +++ +   + M   +  +V +    KY    +      +  W P E+ +  D   +    
Sbjct: 15  KQKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 71

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 72  NLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 131

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+   +   I A+A     Y   L   +                  T
Sbjct: 132 HIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVT 191

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 192 VSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 250

Query: 236 NFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++  +          E Q +   +  +A   E  +A      G  +GLN  
Sbjct: 251 TSTQHMLNLMRAGSDDPEMAEIAVELQDECFELFKKAAEQEKEWAAYLFKDGSMIGLNKE 310

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
              QY+++I N R   +GL   F+  T+NP PW++  +    
Sbjct: 311 ILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 352


>gi|161353784|ref|NP_274308.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           meningitidis MC58]
 gi|304387414|ref|ZP_07369605.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           meningitidis ATCC 13091]
 gi|304338507|gb|EFM04626.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           meningitidis ATCC 13091]
 gi|316984078|gb|EFV63056.1| ribonucleoside-diphosphate reductase 1 subunit beta [Neisseria
           meningitidis H44/76]
 gi|325134468|gb|EGC57113.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M13399]
 gi|325140485|gb|EGC63006.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis CU385]
 gi|325144569|gb|EGC66868.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M01-240013]
 gi|325200084|gb|ADY95539.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis H44/76]
 gi|325204292|gb|ADY99745.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M01-240355]
 gi|325205936|gb|ADZ01389.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M04-240196]
          Length = 377

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +  ++ M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 7   PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 64  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   ITA+A     Y   L   +                  
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPV 183

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T   +   ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E Q +   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 303 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 345


>gi|149392653|gb|ABR26129.1| ribonucleoside-diphosphate reductase small chain [Oryza sativa
           Indica Group]
          Length = 233

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 26/256 (10%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P++Y   WE Y  A  + W   EV +  D   W     L+ DER  +   L FFA+S+
Sbjct: 1   MFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERHFVSHVLAFFAASD 58

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
            +V  N+       +   E R +   Q   E +HS  +  ++ +   D+ E   LF    
Sbjct: 59  GIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDVEKDRLFRAID 118

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            VP++  KA+WA+++              D  + F + L   +   EG++F   F  I  
Sbjct: 119 TVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVEGIFFSGSFCAIFW 164

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
           L +   M G+    + I RDE LH +F   + + ++ +         + + + ++ +A  
Sbjct: 165 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLD-------ESRVQEIVADAVD 217

Query: 271 LEIAYAHETMPKGFVG 286
           +E  +  + +P   VG
Sbjct: 218 IEREFVCDALPVALVG 233


>gi|257373022|ref|YP_003175796.1| ribonucleotide reductase [Halomicrobium mukohataei DSM 12286]
 gi|257167746|gb|ACV49438.1| ribonucleotide reductase [Halomicrobium mukohataei DSM 12286]
          Length = 336

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/323 (22%), Positives = 141/323 (43%), Gaps = 18/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
             QL P +Y    E   +  N++W+ TE     D+  +K     T  E+ +IKR +   A
Sbjct: 19  RTQLKPYEYPDVLEYKDAIRNSYWVHTEFNFSGDVQDFKVNT--TPAEKAVIKRTMLAIA 76

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E          IY  +   E     +  A  E  H   + +++  LG+   E F    
Sbjct: 77  QIEV-QVKTFWADIYDEMPKAEVGNVGMTFAESEVRHMDAYSHLLDILGIT--EDFEEVT 133

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +VP+I  + ++  +Y +            D  QE++  L +F    E +  ++ F  + S
Sbjct: 134 DVPAIEERIDYLDEYLEK--------SESDDTQEYVMSLLLFSTFVEHVSLFSQFLIMTS 185

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +   K  GIA   +   ++E +H  FG++++  I+ ENP L+ ++F+++ +    +A 
Sbjct: 186 FDKHEKKFKGIANAVEATSKEEQIHGLFGVELVETIREENPDLFDEDFEEEVQAACQQAF 245

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E+        +G +  L     + +++   N+    +G+EP+F+  E+      W  E
Sbjct: 246 EAEMKILDWIFGEGELEFLPRAHVDAFLRDRFNQSLENVGVEPIFEPDEDLLEETRWFDE 305

Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
            I + K+ +FF  R T Y + A+
Sbjct: 306 DIMMTKDNDFFSKRSTTYNKHAQ 328


>gi|255065945|ref|ZP_05317800.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sicca
           ATCC 29256]
 gi|255049856|gb|EET45320.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sicca
           ATCC 29256]
          Length = 377

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 136/342 (39%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +    
Sbjct: 8   KTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+   +   I A+A     Y   L   +                  T
Sbjct: 125 HIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVT 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++  +          E Q +   +  +A   E  +A      G  +GLN  
Sbjct: 244 TSTQHMLNLMRAGSDDPEMAEIAVELQDECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKE 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
              QY+++I N R   +GL   F+  T+NP PW++  +    
Sbjct: 304 ILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 345


>gi|7226528|gb|AAF41664.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis MC58]
 gi|254670476|emb|CBA06168.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
           meningitidis alpha153]
          Length = 384

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +  ++ M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 14  PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 71  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 130

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   ITA+A     Y   L   +                  
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPV 190

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T   +   ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 191 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E Q +   +  +A   E  +A      G  +GLN 
Sbjct: 250 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 309

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 352


>gi|258620211|ref|ZP_05715250.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
           VM573]
 gi|258587569|gb|EEW12279.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
           VM573]
          Length = 381

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 136/342 (39%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +  +V +    KY    +      +  W P EV +  D   +    
Sbjct: 12  QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 68

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 69  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 128

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
           +II ++  D   +F+   E   I  +A     Y                    ++  +  
Sbjct: 129 HIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVN 188

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              +D  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 189 VSMRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 247

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                +IN ++            +E +Q+S  +  +A   E  +A      G  +GLN  
Sbjct: 248 TGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKD 307

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
              QY+++I N R   +GLEP +     NP PW++  +    
Sbjct: 308 ILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWINAWLSSDN 349


>gi|238895770|ref|YP_002920506.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548088|dbj|BAH64439.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 396

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 134/329 (40%), Gaps = 27/329 (8%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M   +  +V +    KY    +      +  W P EV +  D   ++    L + E+ 
Sbjct: 36  EPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKH 92

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II ++  
Sbjct: 93  IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVN 152

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFTTGTKDADQ 183
           D   +F+       I  +A     Y  +L                    + T   ++  +
Sbjct: 153 DPATVFDDIVTNEQIQKRAEGISHYYDSLIEMTSYWHLLGEGTHTVNGKTVTVNLRELKK 212

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           +    L     + E + FY  FA   +      M G A+  + I RDE+LHL     ++N
Sbjct: 213 KLYLCLMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLTGTQHMLN 271

Query: 244 --QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
             +   ++P +    +E +Q+   +   A   E  +A      G  +GLN     QY+++
Sbjct: 272 LLRSGSDDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFRDGSMIGLNKDILCQYVEY 331

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           I N R   +GL+  F+   NP PW++  +
Sbjct: 332 ITNIRMQAVGLDLPFQTRSNPIPWINTWL 360


>gi|298368555|ref|ZP_06979873.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282558|gb|EFI24045.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 384

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 135/342 (39%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +    
Sbjct: 15  KTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 71

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 72  NLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 131

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+   +   I A+A     Y   L   +                  T
Sbjct: 132 HIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVT 191

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 192 VSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 250

Query: 236 NFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++             E Q +   +  +A   E  +A      G  +GLN  
Sbjct: 251 TSTQHMLNLMRAGADDPEMAEIAVELQDECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKE 310

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
              QY+++I N R   +GL   F+  T+NP PW++  +    
Sbjct: 311 ILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 352


>gi|313668429|ref|YP_004048713.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           lactamica ST-640]
 gi|313005891|emb|CBN87347.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           lactamica 020-06]
          Length = 377

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 134/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 7   PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 64  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   ITA+A     Y   L   +                  
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPV 183

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T   +   ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E Q +   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLMRSGVDDPEMAEIAAELQDECFRLFKKAAEQEKEWAAYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 303 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 345


>gi|76875271|emb|CAI86492.1| ribonucleoside-diphosphate reductase 1, beta subunit
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 359

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 126/311 (40%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   ++    L D E+ +   NL +    +S+  
Sbjct: 16  KYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPDHEKHIFLSNLKYQTLLDSVQG 72

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++      +F+       I+ 
Sbjct: 73  RSPNVALLPIVSLPELETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISE 132

Query: 158 KANWALQYTQTLSSP-SFTTGTKDADQEFLQDLFVFYVV---------------FEGMWF 201
           +A+   +Y   L +  S      +   E      V  +                 E + F
Sbjct: 133 RADAVTKYYDDLINSVSLYNLYGEGKHEINGKSVVVNLFELKKKLYLAMMSVNILEAIRF 192

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWT--KEF 257
           Y  FA   +      M G A+  + I RDE+LHL+    ++N  Q   ++P +     + 
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQC 252

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           + ++  M  +A   E  +A      G  +GLN     QY+++I N R   IG    FK  
Sbjct: 253 RDEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGFPAQFKNN 312

Query: 317 ENPFPWMSEVI 327
            NP PW++  +
Sbjct: 313 SNPIPWINSWL 323


>gi|117624429|ref|YP_853342.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           APEC O1]
 gi|237704711|ref|ZP_04535192.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           3_2_53FAA]
 gi|115513553|gb|ABJ01628.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           APEC O1]
 gi|226901077|gb|EEH87336.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           3_2_53FAA]
 gi|323952030|gb|EGB47904.1| ribonucleotide reductase [Escherichia coli H252]
 gi|323956004|gb|EGB51757.1| ribonucleotide reductase [Escherichia coli H263]
          Length = 420

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 52  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 108

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 109 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 168

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 169 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 228

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 229 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 287

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 288 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 347

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 348 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 384


>gi|170767354|ref|ZP_02901807.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           albertii TW07627]
 gi|170123688|gb|EDS92619.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           albertii TW07627]
          Length = 376

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 138/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A    +Y   L                    + T
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISRYYDELIEMTSYWHLLGEGTHTVNGKTVT 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|320175005|gb|EFW50120.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           dysenteriae CDC 74-1112]
          Length = 376

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFTSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|254805092|ref|YP_003083313.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
           meningitidis alpha14]
 gi|254668634|emb|CBA06257.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
           meningitidis alpha14]
          Length = 384

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +  ++ M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 14  PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 71  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 130

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   ITA+A     Y   L   +                  
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPI 190

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T   +   ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 191 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E Q +   +  +A   E  +A      G  +GLN 
Sbjct: 250 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 309

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 352


>gi|319638203|ref|ZP_07992966.1| ribonucleoside diphosphate reductase subunit I beta [Neisseria
           mucosa C102]
 gi|317400476|gb|EFV81134.1| ribonucleoside diphosphate reductase subunit I beta [Neisseria
           mucosa C102]
          Length = 384

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 138/342 (40%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +    
Sbjct: 15  KTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 71

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 72  NLPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWSFSETIHSRSYT 131

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+   +   I A+A     Y   L   +                  T
Sbjct: 132 HIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVT 191

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 192 VSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 250

Query: 236 NFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++   ++P +     E Q +   +  +A   E  +A      G  +GLN  
Sbjct: 251 TSTQHMLNLMRAGADDPEMAEIANELQDECFNLFKKAAEQEKEWAAYLFKDGSMIGLNKE 310

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
              QY+++I N R   +GL   F+  T+NP PW++  +    
Sbjct: 311 ILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 352


>gi|121635003|ref|YP_975248.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           meningitidis FAM18]
 gi|120866709|emb|CAM10461.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           meningitidis FAM18]
 gi|325128288|gb|EGC51172.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis N1568]
 gi|325130346|gb|EGC53112.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis OX99.30304]
 gi|325132508|gb|EGC55201.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M6190]
 gi|325136206|gb|EGC58814.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M0579]
 gi|325138282|gb|EGC60851.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis ES14902]
 gi|325142424|gb|EGC64828.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis 961-5945]
 gi|325198443|gb|ADY93899.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis G2136]
 gi|325201998|gb|ADY97452.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           meningitidis M01-240149]
          Length = 377

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +  ++ M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 7   PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 64  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   ITA+A     Y   L   +                  
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPI 183

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T   +   ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E Q +   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 303 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 345


>gi|308389409|gb|ADO31729.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           meningitidis alpha710]
          Length = 384

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +  ++ M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 14  PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 71  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 130

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   ITA+A     Y   L   +                  
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPI 190

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T   +   ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 191 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E Q +   +  +A   E  +A      G  +GLN 
Sbjct: 250 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 309

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 352


>gi|253989035|ref|YP_003040391.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638141|emb|CAR66767.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid
           reductase 1) (b2 protein) (r2 protein) [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780485|emb|CAQ83647.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid
           reductase 1) (b2 protein) (r2 protein) [Photorhabdus
           asymbiotica]
          Length = 376

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 134/335 (40%), Gaps = 27/335 (8%)

Query: 16  RVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           + +   + M   +  +V +    KY    +      +  W P EV +  D   +   N L
Sbjct: 10  KNDQLQEPMFFGQPVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NAL 66

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
            D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ +I
Sbjct: 67  PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHI 126

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-----------------TG 177
           I ++  D   +F+       I  +A     Y   L   +                     
Sbjct: 127 IRNIVNDPAVVFDDIVTNEEILKRAKDISAYYDDLIEMTNNYQLFGEGTHQIAGKTITVS 186

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
            ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL  
Sbjct: 187 LRELKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTG 245

Query: 238 GIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
              ++N  +   ++P +     E +Q+   +  +A   E  +A     +G  +GLN    
Sbjct: 246 TQHMLNLLRSGQDDPEMAEIANECEQQCYDLFVQAAEQEKEWADYLFSEGSMIGLNRDIL 305

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 306 CQYVEYITNIRMQAVGLKLPFETRSNPIPWINAWL 340


>gi|40889712|pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
           Ribonucleotide Reductase
 gi|40889713|pdb|1RSR|B Chain B, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
           Ribonucleotide Reductase
          Length = 375

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 7   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +F 
Sbjct: 64  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E +  Y  FA   +      M G A+  + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRAYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339


>gi|1942079|pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
 gi|1942080|pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
 gi|15825694|pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
           Oxidized By Nitric Oxide
 gi|15825695|pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
           Oxidized By Nitric Oxide
 gi|15826771|pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
           Oxidized By Hydrogen Peroxide And Hydroxylamine
 gi|15826772|pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
           Oxidized By Hydrogen Peroxide And Hydroxylamine
 gi|29726528|pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2
           From E. Coli In Its Oxidised (Met) Form
 gi|29726529|pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2
           From E. Coli In Its Oxidised (Met) Form
          Length = 375

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 7   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 64  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339


>gi|37526941|ref|NP_930285.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786374|emb|CAE15427.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotide
           reductase 1) (B2 protein) (R2 protein) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 376

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 135/334 (40%), Gaps = 25/334 (7%)

Query: 16  RVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           + +   + M   +  +V +    KY    +      +  W P EV +  D   +   N L
Sbjct: 10  KNDQLQEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NAL 66

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
            D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ +I
Sbjct: 67  PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHI 126

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------TGT 178
           I ++  D   +F+       I  +A     Y   L   +                  T +
Sbjct: 127 IRNIVNDPAVVFDDIVTNEEILKRAKDISAYYDDLIEMTNHYQLFGEGTHQIAGKTITAS 186

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
               ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL   
Sbjct: 187 LRGLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGT 246

Query: 239 IDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
             ++N  +   ++P +    KE +Q+   +  +A   E  +A     +G  +GLN     
Sbjct: 247 QHMLNLLRSGQDDPEMAEIAKECEQQCYDLFVQAAEQEKEWADYLFSEGSMIGLNKDILC 306

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 307 QYVEYITNIRMQAVGLKLPFETRSNPIPWINAWL 340


>gi|225023977|ref|ZP_03713169.1| hypothetical protein EIKCOROL_00844 [Eikenella corrodens ATCC
           23834]
 gi|224943002|gb|EEG24211.1| hypothetical protein EIKCOROL_00844 [Eikenella corrodens ATCC
           23834]
          Length = 384

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 134/342 (39%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +++ +V  + M   +  +V +    KY    +      +  W P E+ +  D   +    
Sbjct: 15  KEKNDVLKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 71

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 72  NLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 131

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-----------------SFT 175
           +II ++  D   +F+   +   I A+A     Y   L                    +  
Sbjct: 132 HIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYYNLLGEGEHRVNGKTIV 191

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              +D  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 192 VSLRDLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 250

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++             E +     +  +A   E  +A      G  +GLN  
Sbjct: 251 TSTQHMLNLMRSGTDDPEMAEIAAELENDCFELFKKAAEQEKEWAEYLFKDGSMIGLNKD 310

Query: 291 SCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
              QY+++I N R   +GL   F   T+NP PW++  +    
Sbjct: 311 ILCQYVEYITNHRMMAVGLNAAFPAATQNPIPWINAWLSSDN 352


>gi|301156451|emb|CBW15922.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Haemophilus parainfluenzae T3T1]
          Length = 376

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 128/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QTKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
           +II ++  D   +F+       I  +A     Y   L   S         T T D  +  
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKECV 184

Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           +             +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +             +E +Q++  +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKEWADYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F    NP PW++  +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFGARSNPIPWINAWL 340


>gi|193068232|ref|ZP_03049196.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E110019]
 gi|300903617|ref|ZP_07121535.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 84-1]
 gi|300926340|ref|ZP_07142140.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 182-1]
 gi|301328725|ref|ZP_07221778.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 78-1]
 gi|30041924|gb|AAP17650.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           flexneri 2a str. 2457T]
 gi|56383622|gb|AAN43832.2| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           flexneri 2a str. 301]
 gi|192958511|gb|EDV88950.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E110019]
 gi|300404353|gb|EFJ87891.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 84-1]
 gi|300417617|gb|EFK00928.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 182-1]
 gi|300844873|gb|EFK72633.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 78-1]
 gi|315255170|gb|EFU35138.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 85-1]
          Length = 389

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 21  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 77

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 78  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 137

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 138 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 197

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 198 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 256

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 257 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 316

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 317 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 353


>gi|330829606|ref|YP_004392558.1| ribonucleoside diphosphate reductase 1 subunit beta, ferritin-like
           protein [Aeromonas veronii B565]
 gi|328804742|gb|AEB49941.1| Ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Aeromonas veronii B565]
          Length = 393

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 134/334 (40%), Gaps = 26/334 (7%)

Query: 21  DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            + M   +S +V +    K+           +  W P EV +  D   ++    L   E+
Sbjct: 31  KEPMFFGQSVNVARYDQQKHEVFERLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPPHEQ 87

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II ++ 
Sbjct: 88  HIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWAFSETIHSRSYTHIIRNIV 147

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------TGTKDADQ 183
               ++F+       I  +A     +   L   +                  T T    +
Sbjct: 148 NTPAQVFDDIVTNEQILKRAGSISHFYDDLIEATALYNLHGEGTHTVAGREVTITLRELK 207

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L    +     E + FY  FA   +      M G A+  + I RDE+LHL     ++N
Sbjct: 208 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHMLN 267

Query: 244 QIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
            ++   ++P +     E +Q    +  EA + E  +A      G  +GLN     QY+++
Sbjct: 268 LMRTGQDDPEMAEIAAECEQACFEIFKEAAIQEKEWAEYLFQDGSMIGLNKDILCQYVEY 327

Query: 299 IANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK 331
           I N R   +GL+P F  T+ NP PW++  +    
Sbjct: 328 ITNLRMSAVGLQPAFAGTKQNPIPWINTWLSSDN 361


>gi|85711601|ref|ZP_01042658.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina
           baltica OS145]
 gi|85694461|gb|EAQ32402.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina
           baltica OS145]
          Length = 377

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 133/337 (39%), Gaps = 26/337 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +++ N   + M    S +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QEQTNPLAEPMFFGNSVNVARYDQQKHSIFEKLIEKQISFFWRPEEVDVSRDRVDF---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT  E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLTASEKHVFISNLKYQTLLDSIQGRSPNIALLPIVSLPELETWIETWSFFETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG-------TKDADQEF 185
           +I+ +L  D  E+F        I  +AN   +Y   L   +           T D ++  
Sbjct: 125 HILRNLFSDPSEIFEDIVINDQIKLRANDISRYYDDLIFYTQLWQTHGEGKITVDGEEHN 184

Query: 186 LQD---------LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           +                   E + FY  FA   +      M G A+  + I RDE++HL 
Sbjct: 185 VTRRELKKKLFLCINSVNALEAIRFYVSFACTFAFAERELMEGNAKIIRLIARDENVHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN  +            +E   ++  +   A   E  +AH     G  +GLN   
Sbjct: 245 STQHMINLWQDGEDDPEMAEIAEELADEAYEIFMTAVKQEKQWAHYLFRDGSMIGLNESM 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVI 327
             QY+++IAN R   IG +  F     NP PWM++ +
Sbjct: 305 LCQYVEYIANLRMQAIGYDAPFPEQRSNPLPWMNKYL 341


>gi|300723737|ref|YP_003713044.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630261|emb|CBJ90912.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus
           nematophila ATCC 19061]
          Length = 376

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 136/334 (40%), Gaps = 25/334 (7%)

Query: 16  RVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           + N   + M   +S +V +    KY    +      +  W P EV +  D   + S   L
Sbjct: 10  KNNQLQEPMFFGQSVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDYNS---L 66

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
            D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ +I
Sbjct: 67  PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHI 126

Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS----------------FTTGT 178
           I ++  D   +F+   E   I  +A     Y   L   +                  T  
Sbjct: 127 IRNIVNDPSIVFDDIVENEQILKRAKDISAYYDDLIEMTNYYHQLGEGVHNVAGKIVTVN 186

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
             A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL   
Sbjct: 187 LRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGT 246

Query: 239 IDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
             ++N  +   ++P +    KE +QK   +  +A   E  +A      G  +GLN     
Sbjct: 247 QHMLNLLRSGQDDPEMAEIAKECEQKCYDLFVDAAEQEKEWADYLFKDGSMIGLNKDILC 306

Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 307 QYIEYITNIRMQAVGLKLPFETRSNPIPWINAWL 340


>gi|170019452|ref|YP_001724406.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           ATCC 8739]
 gi|187775748|ref|ZP_02798054.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188024880|ref|ZP_02774660.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|189010171|ref|ZP_02805091.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189402101|ref|ZP_02779989.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189403050|ref|ZP_02792862.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189404930|ref|ZP_02812148.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|189405663|ref|ZP_02823406.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|208806716|ref|ZP_03249053.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208812585|ref|ZP_03253914.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208820390|ref|ZP_03260710.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398142|ref|YP_002271641.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|293415528|ref|ZP_06658171.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
 gi|300948933|ref|ZP_07162994.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 116-1]
 gi|300958921|ref|ZP_07171024.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 175-1]
 gi|307138893|ref|ZP_07498249.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           H736]
 gi|169754380|gb|ACA77079.1| Ribonucleoside-diphosphate reductase [Escherichia coli ATCC 8739]
 gi|187771218|gb|EDU35062.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188016038|gb|EDU54160.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|189002108|gb|EDU71094.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357709|gb|EDU76128.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362845|gb|EDU81264.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189372811|gb|EDU91227.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|189378868|gb|EDU97284.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|208726517|gb|EDZ76118.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208733862|gb|EDZ82549.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208740513|gb|EDZ88195.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209159542|gb|ACI36975.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|291433176|gb|EFF06155.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
 gi|300314424|gb|EFJ64208.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 175-1]
 gi|300451587|gb|EFK15207.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 116-1]
 gi|315136867|dbj|BAJ44026.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           DH1]
 gi|320192144|gb|EFW66789.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. EC1212]
 gi|320641061|gb|EFX10540.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. G5101]
 gi|320646450|gb|EFX15369.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H- str. 493-89]
 gi|320651547|gb|EFX19927.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H- str. H 2687]
 gi|320657299|gb|EFX25101.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320667818|gb|EFX34726.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323936632|gb|EGB32918.1| ribonucleotide reductase [Escherichia coli E1520]
 gi|323941071|gb|EGB37258.1| ribonucleotide reductase [Escherichia coli E482]
 gi|326344044|gb|EGD67805.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. 1044]
          Length = 389

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 21  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 77

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 78  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 137

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 138 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 197

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 198 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 256

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 257 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 316

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 317 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 353


>gi|219883069|ref|YP_002478233.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus
           A6]
 gi|219862075|gb|ACL42416.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus
           A6]
          Length = 326

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/342 (19%), Positives = 133/342 (38%), Gaps = 34/342 (9%)

Query: 23  RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           +++N R +      ++     E +    NN W+P ++P+ +D+  W +   LT +E+L+ 
Sbjct: 6   KLIN-RVNAINWNRIQDDKDVEVWNRLVNNFWLPEKIPLSNDVQSWAT---LTPEEQLLT 61

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
            R        +++      +++      P     L   AF E+VH+ ++  I ++L   +
Sbjct: 62  MRVFTGLTLLDTIQGTVGAVSLIPDAITPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTK 121

Query: 143 --GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
              E F    E   +  KA   + Y Q                       V   + E   
Sbjct: 122 EIDEAFRWSEENVHLQKKAQIVMDYYQGDD---------------PLKRKVASTLLESFL 166

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF   +      K+   A+  + I++DE++H  +      +   +      +E Q  
Sbjct: 167 FYSGFYLPMYWSSRAKLTNTADLIRLIIKDEAVHGYYIGYKFQRGLEKETAERREELQAY 226

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--- 317
           +  +L E    E+ Y H+      VGL A   ++++ + AN+    +GL+P+F       
Sbjct: 227 AYELLDELYENEVQYTHDLYDG--VGL-AEDVKKFLHYNANKALMNLGLDPVFAQDATNV 283

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE-------LKWD 352
           NP    +   +  +  +FF    + Y  G+          WD
Sbjct: 284 NPAILSALSPNADENHDFFSGSGSSYIVGSSKAVSTLDGDWD 325


>gi|161870162|ref|YP_001599332.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           meningitidis 053442]
 gi|161595715|gb|ABX73375.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
           meningitidis 053442]
          Length = 384

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +  ++ M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 14  PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 71  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 130

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   ITA+A     Y   L   +                  
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPV 190

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T   +   ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 191 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E Q +   +  +A   E  +A      G  +GLN 
Sbjct: 250 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 309

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 352


>gi|120598753|ref|YP_963327.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
           W3-18-1]
 gi|146293170|ref|YP_001183594.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           putrefaciens CN-32]
 gi|120558846|gb|ABM24773.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella sp. W3-18-1]
 gi|145564860|gb|ABP75795.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella putrefaciens CN-32]
 gi|319426318|gb|ADV54392.1| ribonucleotide reductase [Shewanella putrefaciens 200]
          Length = 376

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 130/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   +   + M   +S +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QTPNDATREPMFLGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDYND-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 66  -LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS--FTTGTKDADQEFLQDLF 190
           +II ++  D   +F+       I  +A    +Y   L   +  F            ++L 
Sbjct: 125 HIIRNIVNDPSVIFDDIVVNKEILRRATDIAEYYDHLIKLTQVFNLFGAGTHLIDGEELV 184

Query: 191 --------------VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 185 VNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLN 244

Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++         E     QQ++  +  +A   E  +A      G  +GLN   
Sbjct: 245 STQHILNIMQGGKDDPEMGEIAAQCQQEAYDLFLKAAEQEKEWAKYLFKDGSMIGLNEQI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY++FI N+R   + L   +  + NP PWM   +
Sbjct: 305 LCQYVEFITNQRMKSVNLPQPYPESTNPLPWMKNWL 340


>gi|269213593|ref|ZP_05982340.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           cinerea ATCC 14685]
 gi|269146056|gb|EEZ72474.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           cinerea ATCC 14685]
          Length = 377

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 7   PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 64  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   I A+A     Y   L   +                  
Sbjct: 124 THIIRNIVNDPSIVFDDIVENEYIIARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKLV 183

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
               ++  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 184 NVSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++            +E Q++   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTSTQHMLNLMRSGVDDPEMAEIAEELQEECFKLFKKAAEQEKEWAAYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 303 EILSQYVEYITNLRMQAVGLPIGFEGANQNPIPWINAWLSSDN 345


>gi|296128314|ref|YP_003635564.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM
           20109]
 gi|296020129|gb|ADG73365.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM
           20109]
          Length = 326

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 130/348 (37%), Gaps = 34/348 (9%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
               ++ + D+    +  + N+L   K    W+       N W+P +VP+ +D+  W + 
Sbjct: 2   TPTGKLKLVDR---VSAINWNRLQDEKDLEVWD---RLVGNFWLPEKVPVSNDIQSWAT- 54

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             LT+ E+ M  R        +++      +++      P         AF E+VH+ ++
Sbjct: 55  --LTEAEKTMTTRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSY 112

Query: 132 QYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
             I ++L   +   E F    E P++  KA   L Y +                      
Sbjct: 113 SSIFSTLISTKEIDEAFRWSEENPNLQRKAEIVLDYYRGDD---------------PLKR 157

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +     
Sbjct: 158 KVASTMLESFLFYSGFYAPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLERV 217

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                 E +  +  +L E    E+ Y  +      +GL     ++++++ AN+    +G 
Sbjct: 218 SEAERAELKDYTFNLLFELYDNEVEYTQDLY--DELGLT-EDVKKFLRYNANKALMNLGY 274

Query: 310 EPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
           E LF   E   NP    +   +  +  +FF    + Y   +    + D
Sbjct: 275 EALFPRDETDVNPAILAALSPNADENHDFFSGSGSSYVIGKAVNTEDD 322


>gi|332093862|gb|EGI98916.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           boydii 5216-82]
          Length = 376

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 136/336 (40%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y   L                 +    T
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            +    ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VSLCELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244

Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|291283479|ref|YP_003500297.1| Ribonucleoside-diphosphate reductase 1, beta subunit, B2
           [Escherichia coli O55:H7 str. CB9615]
 gi|290763352|gb|ADD57313.1| Ribonucleoside-diphosphate reductase 1, beta subunit, B2
           [Escherichia coli O55:H7 str. CB9615]
          Length = 389

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 21  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 77

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 78  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 137

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 138 HIIRNIVNDPSVVFDDIITNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 197

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 198 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 256

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 257 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 316

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 317 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 353


>gi|494379|pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide
           Reductase From Escherichia Coli. Spectroscopic And
           Crystallographic Characterization
 gi|494380|pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide
           Reductase From Escherichia Coli. Spectroscopic And
           Crystallographic Characterization
 gi|494553|pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli
           Ribonucleotide Reductase Protein R2
 gi|494554|pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli
           Ribonucleotide Reductase Protein R2
          Length = 375

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 134/337 (39%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
             + +   + M   +   V +    KY    +      +  W P EV +  D   ++   
Sbjct: 7   ATKNDQLKEPMFFGQPVQVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 64  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F    NP PW++  +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWL 339


>gi|284799957|ref|ZP_05985309.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           subflava NJ9703]
 gi|284796454|gb|EFC51801.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
           subflava NJ9703]
          Length = 377

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 134/342 (39%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +    
Sbjct: 8   KTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+   +   I A+A     Y   L   +                  T
Sbjct: 125 HIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYTQYYNLLGEGSHNVGGKLVT 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++             E Q +   +  +A   E  +A      G  +GLN  
Sbjct: 244 TSTQHMLNLMRAGADDPEMAEIANELQDECFNLFKKAAEQEKEWAAYLFKDGSMIGLNKE 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
              QY+++I N R   +GL   F+  T+NP PW++  +    
Sbjct: 304 ILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 345


>gi|4389292|pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
           E238a
 gi|40889714|pdb|1RSV|A Chain A, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
           Ribonucleotide Reductase
 gi|40889715|pdb|1RSV|B Chain B, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
           Ribonucleotide Reductase
          Length = 375

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 7   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +F 
Sbjct: 64  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RD +LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDAALHL 242

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339


>gi|183599610|ref|ZP_02961103.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827]
 gi|188021860|gb|EDU59900.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827]
          Length = 378

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 134/336 (39%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +KR +   + M   +  +V +    KY    +      +  W P EV +  D   +   N
Sbjct: 10  QKRNDQLLEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---N 66

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GL D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 67  GLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 126

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
           +II ++  D   +F+   E   I  +A     Y  TL   +                   
Sbjct: 127 HIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTLIEMTNYYHMFGEGTHTCNGKQIT 186

Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 187 VSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 246

Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +   ++P +     E + +   +  +A   E  +A     +G  +GLN   
Sbjct: 247 GTQHMLNLLRSGQDDPEMAEIAAECEDECYKLFVDAAEQEKEWAEYLFSEGSMIGLNKDI 306

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 307 LCQYVEYITNIRMQAVGLKLPFEARSNPIPWINAWL 342


>gi|237808189|ref|YP_002892629.1| ribonucleotide-diphosphate reductase subunit beta [Tolumonas
           auensis DSM 9187]
 gi|237500450|gb|ACQ93043.1| ribonucleotide reductase [Tolumonas auensis DSM 9187]
          Length = 377

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/342 (20%), Positives = 132/342 (38%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           ++  +   + M   ++ +V +    KY           +  W P EV +  D   +++  
Sbjct: 8   KQPNDARKEPMFFGQTVNVARYDQQKYEVFERLIEKQLSFFWRPEEVDVSQDRIDYQT-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L   E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 66  -LPPHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-----------------SFT 175
           +II ++  D   +F+       I  +A     Y   L                    +  
Sbjct: 125 HIIRNIVNDPAVVFDDIVVNEQIIKRAEDIAGYYDELIELTQYWQLLGEGTHQVNGKTVV 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VSRRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++  N         +E   +   +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNILREGNDDPEMAEIARELHDECFALFKKAAEQEKEWASYLFKDGSMLGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
              QY++FI N R   +GL   F    +NP PW++  ++   
Sbjct: 304 ILCQYVEFITNVRMQGVGLPLAFDADRQNPLPWINTWLNSDN 345


>gi|146312444|ref|YP_001177518.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter sp.
           638]
 gi|145319320|gb|ABP61467.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Enterobacter sp. 638]
          Length = 376

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 137/336 (40%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y   L                 +    T
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISHYYDELIEMTSYWHLLGEGTHSVNGKTVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
               A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLT 244

Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +  +++P +    +E +Q+   +   A L E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVLAALQEKEWAEYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GLE  FK   NP PW++  +
Sbjct: 305 LCQYIEYITNIRMQAVGLELPFKTRSNPIPWINTWL 340


>gi|26248623|ref|NP_754663.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           CFT073]
 gi|74312755|ref|YP_311174.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sonnei
           Ss046]
 gi|91211528|ref|YP_541514.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UTI89]
 gi|110642443|ref|YP_670173.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           536]
 gi|157157492|ref|YP_001463584.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           E24377A]
 gi|161485800|ref|NP_708125.3| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 2a str. 301]
 gi|161486465|ref|NP_837840.2| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 2a str. 2457T]
 gi|191166513|ref|ZP_03028343.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B7A]
 gi|191170278|ref|ZP_03031832.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli F11]
 gi|194433322|ref|ZP_03065602.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
           dysenteriae 1012]
 gi|209919687|ref|YP_002293771.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           SE11]
 gi|215487452|ref|YP_002329883.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218554798|ref|YP_002387711.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           IAI1]
 gi|218559152|ref|YP_002392065.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           S88]
 gi|218695841|ref|YP_002403508.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           55989]
 gi|218700706|ref|YP_002408335.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           IAI39]
 gi|227887293|ref|ZP_04005098.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 83972]
 gi|253772842|ref|YP_003035673.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162246|ref|YP_003045354.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           B str. REL606]
 gi|256017603|ref|ZP_05431468.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
 gi|260844831|ref|YP_003222609.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|260856285|ref|YP_003230176.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|260868965|ref|YP_003235367.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O111:H- str. 11128]
 gi|293446578|ref|ZP_06663000.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|300818165|ref|ZP_07098377.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 107-1]
 gi|300822109|ref|ZP_07102251.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 119-7]
 gi|300981251|ref|ZP_07175428.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 200-1]
 gi|300983269|ref|ZP_07176508.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 45-1]
 gi|301048988|ref|ZP_07195975.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 185-1]
 gi|306814652|ref|ZP_07448814.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           NC101]
 gi|307311198|ref|ZP_07590842.1| ribonucleotide reductase [Escherichia coli W]
 gi|309793115|ref|ZP_07687543.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|331647890|ref|ZP_08348982.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M605]
 gi|331668939|ref|ZP_08369787.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA271]
 gi|331678186|ref|ZP_08378861.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H591]
 gi|26109028|gb|AAN81231.1|AE016763_190 Ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
           CFT073]
 gi|73856232|gb|AAZ88939.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           sonnei Ss046]
 gi|91073102|gb|ABE07983.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
           UTI89]
 gi|110344035|gb|ABG70272.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
           536]
 gi|157079522|gb|ABV19230.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E24377A]
 gi|190903473|gb|EDV63192.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B7A]
 gi|190909794|gb|EDV69379.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli F11]
 gi|194418416|gb|EDX34505.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
           dysenteriae 1012]
 gi|209912946|dbj|BAG78020.1| ribonucleoside diphosphate reductase beta subunit [Escherichia coli
           SE11]
 gi|215265524|emb|CAS09927.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218352573|emb|CAU98352.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli 55989]
 gi|218361566|emb|CAQ99157.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli IAI1]
 gi|218365921|emb|CAR03663.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli S88]
 gi|218370692|emb|CAR18503.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli IAI39]
 gi|222033996|emb|CAP76737.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli LF82]
 gi|227835643|gb|EEJ46109.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 83972]
 gi|242377869|emb|CAQ32637.1| nrdB, subunit of B2 protein and GDP reductase [multifunctional]
           [Escherichia coli BL21(DE3)]
 gi|253323886|gb|ACT28488.1| ribonucleotide reductase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974147|gb|ACT39818.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           B str. REL606]
 gi|253978314|gb|ACT43984.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           BL21(DE3)]
 gi|257754934|dbj|BAI26436.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|257759978|dbj|BAI31475.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|257765321|dbj|BAI36816.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
           coli O111:H- str. 11128]
 gi|281179326|dbj|BAI55656.1| ribonucleoside diphosphate reductase beta subunit [Escherichia coli
           SE15]
 gi|291323408|gb|EFE62836.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|294490302|gb|ADE89058.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli IHE3034]
 gi|300299180|gb|EFJ55565.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 185-1]
 gi|300307615|gb|EFJ62135.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 200-1]
 gi|300408603|gb|EFJ92141.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 45-1]
 gi|300525239|gb|EFK46308.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 119-7]
 gi|300529309|gb|EFK50371.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 107-1]
 gi|305852046|gb|EFM52498.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           NC101]
 gi|306908704|gb|EFN39201.1| ribonucleotide reductase [Escherichia coli W]
 gi|307554301|gb|ADN47076.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli ABU 83972]
 gi|308123401|gb|EFO60663.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|312946856|gb|ADR27683.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313651060|gb|EFS15459.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri 2a str. 2457T]
 gi|315061535|gb|ADT75862.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli W]
 gi|315292180|gb|EFU51532.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 153-1]
 gi|320178793|gb|EFW53756.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           ATCC 9905]
 gi|320196104|gb|EFW70728.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           WV_060327]
 gi|320199830|gb|EFW74419.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           EC4100B]
 gi|323156512|gb|EFZ42666.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli EPECa14]
 gi|323161696|gb|EFZ47579.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli E128010]
 gi|323168602|gb|EFZ54282.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           sonnei 53G]
 gi|323171914|gb|EFZ57558.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli LT-68]
 gi|323176838|gb|EFZ62428.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 1180]
 gi|323184146|gb|EFZ69523.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 1357]
 gi|323188037|gb|EFZ73332.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli RN587/1]
 gi|323377884|gb|ADX50152.1| Ribonucleoside-diphosphate reductase [Escherichia coli KO11]
 gi|324006608|gb|EGB75827.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 57-2]
 gi|324013118|gb|EGB82337.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 60-1]
 gi|324117882|gb|EGC11781.1| ribonucleotide reductase [Escherichia coli E1167]
 gi|325496725|gb|EGC94584.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
           fergusonii ECD227]
 gi|330912066|gb|EGH40576.1| ribonucleotide reductase of class 1a (aerobic), beta subunit
           [Escherichia coli AA86]
 gi|331043614|gb|EGI15752.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M605]
 gi|331064133|gb|EGI36044.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA271]
 gi|331074646|gb|EGI45966.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H591]
 gi|332096162|gb|EGJ01165.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           dysenteriae 155-74]
 gi|332754883|gb|EGJ85248.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri 4343-70]
 gi|332755286|gb|EGJ85650.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri K-671]
 gi|332756386|gb|EGJ86737.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri 2747-71]
 gi|332766056|gb|EGJ96266.1| nrdB [Shigella flexneri 2930-71]
 gi|333001382|gb|EGK20950.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri VA-6]
 gi|333002603|gb|EGK22163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri K-272]
 gi|333016476|gb|EGK35807.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri K-304]
 gi|333016745|gb|EGK36073.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           flexneri K-227]
          Length = 376

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|327394563|dbj|BAK11985.1| ribonucleoside-diphosphate reductase 1 beta subunit NrdB [Pantoea
           ananatis AJ13355]
          Length = 376

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 140/336 (41%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I A+A    QY   L                 +    T
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDLIEMTSYWHLLGEGTHQVNGKSVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            +  A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +   ++P +     E +++   +  +A L E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLLRTGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 305 LCQYIEYITNIRMQAVGLDLPFETRSNPIPWINAWL 340


>gi|225075859|ref|ZP_03719058.1| hypothetical protein NEIFLAOT_00882 [Neisseria flavescens
           NRL30031/H210]
 gi|224952805|gb|EEG34014.1| hypothetical protein NEIFLAOT_00882 [Neisseria flavescens
           NRL30031/H210]
          Length = 388

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 131/341 (38%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +    
Sbjct: 19  KTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 75

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 76  NLPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWSFSETIHSRSYT 135

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFV 191
           +II ++  D   +F+   +   I A+A     Y   L   + +     +        L  
Sbjct: 136 HIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYTQYYNLLGEGSHNIGGKLVT 195

Query: 192 FYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
             +               V E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 196 VSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 255

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++             E Q +   +  +A   E  +A      G  +GLN   
Sbjct: 256 STQHMLNLMRAGADDPEMAEIANELQDECFNLFKKAAEQEKEWAAYLFKDGSMIGLNKEI 315

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
             QY+++I N R   +GL   F+  T+NP PW++  +    
Sbjct: 316 LAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 356


>gi|300936793|ref|ZP_07151685.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 21-1]
 gi|300458078|gb|EFK21571.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 21-1]
          Length = 405

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 37  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 93

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 94  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 153

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 154 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 213

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 214 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 272

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 273 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 332

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 333 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 369


>gi|324112772|gb|EGC06748.1| ribonucleotide reductase [Escherichia fergusonii B253]
          Length = 389

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 21  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 77

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 78  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 137

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 138 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKTVT 197

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 198 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 256

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 257 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 316

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 317 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 353


>gi|322692090|ref|YP_004221660.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320456946|dbj|BAJ67568.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
           longum subsp. longum JCM 1217]
          Length = 330

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 132/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    + ++ N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDR---VSATNWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +  R        +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y +                +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y      +  VGL     E+++++  N+  
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGLT-DDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|218690398|ref|YP_002398610.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           ED1a]
 gi|218427962|emb|CAR08882.2| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli ED1a]
          Length = 376

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+       I  +A     Y   L   +                  T
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKAVT 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|291618170|ref|YP_003520912.1| NrdB [Pantoea ananatis LMG 20103]
 gi|291153200|gb|ADD77784.1| NrdB [Pantoea ananatis LMG 20103]
          Length = 387

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 140/336 (41%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 19  QNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 75

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 76  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 135

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I A+A    QY   L                 +    T
Sbjct: 136 HIIRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDLIEMTSYWHLLGEGTHQVNGKSVT 195

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            +  A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 196 VSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 255

Query: 237 FGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +   ++P +     E +++   +  +A L E  +A      G  +GLN   
Sbjct: 256 GTQHMLNLLRTGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNKDI 315

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 316 LCQYIEYITNIRMQAVGLDLPFETRSNPIPWINAWL 351


>gi|56460472|ref|YP_155753.1| ribonucleotide-diphosphate reductase subunit beta [Idiomarina
           loihiensis L2TR]
 gi|56179482|gb|AAV82204.1| Ribonucleotide reductase, beta subunit [Idiomarina loihiensis L2TR]
          Length = 377

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/337 (22%), Positives = 133/337 (39%), Gaps = 26/337 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +++ N   + M    S +V +    K+    +      +  W P E+ +  D   +   N
Sbjct: 8   QEQNNPLTEPMFLGNSVNVARYDQQKHSIFEKLIEKQISFFWRPEEIDVSRDRIDF---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT  E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLTASEKHVFISNLKYQTLLDSIQGRSPNIALLPIVSLPELETWIETWSFFETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +I+ +L  D  E+F        I  +AN   +Y   L                      T
Sbjct: 125 HILRNLFSDPSEVFEDIVINEQIKIRANDISKYYDDLIFYTQLLQTHGEGDVVVEGKTHT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            T+   ++ L          E + FY  FA   +      M G A+  + I RDE++HL 
Sbjct: 185 VTQREIKKKLFLCINSVNALEAIRFYVSFACTFAFAERELMEGNAKIIKLIARDENVHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +            +E +  +  +   A   E  +AH     G  +GLN   
Sbjct: 245 STQHILNLWQYGEDDPEMKEIAEELRDDAYEIFMTAVKQEKQWAHYLFKDGSMIGLNESM 304

Query: 292 CEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVI 327
             QY+++IAN R   IG +  F     NP PWM++ +
Sbjct: 305 LCQYVEYIANLRMQAIGFDAPFENQRSNPLPWMNKYL 341


>gi|15802782|ref|NP_288809.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 EDL933]
 gi|15832372|ref|NP_311145.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. Sakai]
 gi|16130170|ref|NP_416738.1| ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. MG1655]
 gi|82544520|ref|YP_408467.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           Sb227]
 gi|82777644|ref|YP_403993.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           dysenteriae Sd197]
 gi|89109052|ref|AP_002832.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli str. K-12 substr. W3110]
 gi|157161718|ref|YP_001459036.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           HS]
 gi|170081853|ref|YP_001731173.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187731010|ref|YP_001881065.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           CDC 3083-94]
 gi|188495860|ref|ZP_03003130.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 53638]
 gi|195935609|ref|ZP_03080991.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. EC4024]
 gi|218548311|ref|YP_002382102.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
           fergusonii ATCC 35469]
 gi|218705765|ref|YP_002413284.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UMN026]
 gi|238901409|ref|YP_002927205.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli BW2952]
 gi|254794126|ref|YP_003078963.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. TW14359]
 gi|256022083|ref|ZP_05435948.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           4_1_40B]
 gi|261223312|ref|ZP_05937593.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259138|ref|ZP_05951671.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. FRIK966]
 gi|293405702|ref|ZP_06649694.1| nrdB [Escherichia coli FVEC1412]
 gi|293410599|ref|ZP_06654175.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|298381383|ref|ZP_06990982.1| nrdB [Escherichia coli FVEC1302]
 gi|309785072|ref|ZP_07679705.1| ribonucleoside-diphosphate reductase 1, subunit beta [Shigella
           dysenteriae 1617]
 gi|312973510|ref|ZP_07787682.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 1827-70]
 gi|57014104|sp|P69924|RIR2_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta;
           AltName: Full=Protein B2; AltName: Full=Protein R2;
           AltName: Full=Ribonucleotide reductase 1
 gi|57014105|sp|P69925|RIR2_ECO57 RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta;
           AltName: Full=Protein B2; AltName: Full=Protein R2;
           AltName: Full=Ribonucleotide reductase 1
 gi|12516573|gb|AAG57364.1|AE005456_1 ribonucleoside diphosphage reductase 1, beta subunit, B2
           [Escherichia coli O157:H7 str. EDL933]
 gi|146967|gb|AAA24224.1| ribonucleoside diphosphate reductase B2 subunit precursor
           [Escherichia coli]
 gi|1788567|gb|AAC75295.1| ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. MG1655]
 gi|1799582|dbj|BAA16054.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli str. K12 substr. W3110]
 gi|13362587|dbj|BAB36541.1| ribonucleoside-diphosphate reductase 1 beta subunit [Escherichia
           coli O157:H7 str. Sakai]
 gi|81241792|gb|ABB62502.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           dysenteriae Sd197]
 gi|81245931|gb|ABB66639.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
           boydii Sb227]
 gi|157067398|gb|ABV06653.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli HS]
 gi|169889688|gb|ACB03395.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187428002|gb|ACD07276.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella boydii
           CDC 3083-94]
 gi|188491059|gb|EDU66162.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 53638]
 gi|218355852|emb|CAQ88465.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia fergusonii ATCC 35469]
 gi|218432862|emb|CAR13756.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Escherichia coli UMN026]
 gi|238863475|gb|ACR65473.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli BW2952]
 gi|254593526|gb|ACT72887.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Escherichia coli O157:H7 str. TW14359]
 gi|284922226|emb|CBG35308.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
           042]
 gi|291427910|gb|EFF00937.1| nrdB [Escherichia coli FVEC1412]
 gi|291471067|gb|EFF13551.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|298278825|gb|EFI20339.1| nrdB [Escherichia coli FVEC1302]
 gi|308927442|gb|EFP72916.1| ribonucleoside-diphosphate reductase 1, subunit beta [Shigella
           dysenteriae 1617]
 gi|309702545|emb|CBJ01872.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
           ETEC H10407]
 gi|310332105|gb|EFP99340.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 1827-70]
 gi|315615496|gb|EFU96128.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 3431]
 gi|320184866|gb|EFW59654.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri CDC 796-83]
 gi|320663001|gb|EFX30318.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|327252504|gb|EGE64163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli STEC_7v]
 gi|332094036|gb|EGI99088.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
           boydii 3594-74]
 gi|332344015|gb|AEE57349.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli UMNK88]
          Length = 376

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|4389291|pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
           E238a
          Length = 375

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 135/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 7   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +F 
Sbjct: 64  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E +  Y  FA   +      M G A+  + I RD +LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRXYVSFACSFAFAERELMEGNAKIIRLIARDAALHL 242

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339


>gi|194427189|ref|ZP_03059740.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B171]
 gi|194436109|ref|ZP_03068211.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 101-1]
 gi|300918603|ref|ZP_07135191.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 115-1]
 gi|300931418|ref|ZP_07146747.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 187-1]
 gi|301303305|ref|ZP_07209430.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 124-1]
 gi|194414810|gb|EDX31081.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B171]
 gi|194424837|gb|EDX40822.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 101-1]
 gi|300414255|gb|EFJ97565.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 115-1]
 gi|300460788|gb|EFK24281.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 187-1]
 gi|300841479|gb|EFK69239.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 124-1]
 gi|323961541|gb|EGB57149.1| ribonucleotide reductase [Escherichia coli H489]
 gi|323973062|gb|EGB68256.1| ribonucleotide reductase [Escherichia coli TA007]
          Length = 393

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 25  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 81

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 82  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 141

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 142 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 201

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 202 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 260

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 261 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 320

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 321 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 357


>gi|157879968|pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein
           R2 F208y From Escherichia Coli Ribonucleotide Reductase
           And Crystal Structure Of The Dopa-208 Protein
 gi|157879969|pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein
           R2 F208y From Escherichia Coli Ribonucleotide Reductase
           And Crystal Structure Of The Dopa-208 Protein
          Length = 375

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 133/337 (39%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
             + +   + M   +   V +    KY    +      +  W P EV +  D   ++   
Sbjct: 7   ATKNDQLKEPMFFGQPVQVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 64  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E +  Y  FA   +      M G A+  + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRXYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F    NP PW++  +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWL 339


>gi|331663742|ref|ZP_08364652.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA143]
 gi|323977567|gb|EGB72653.1| ribonucleotide reductase [Escherichia coli TW10509]
 gi|331059541|gb|EGI31518.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA143]
          Length = 389

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 21  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 77

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 78  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 137

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 138 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 197

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 198 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 256

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 257 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 316

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 317 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 353


>gi|331658316|ref|ZP_08359278.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA206]
 gi|307626227|gb|ADN70531.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UM146]
 gi|331056564|gb|EGI28573.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA206]
          Length = 389

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 21  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 77

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 78  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 137

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 138 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 197

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 198 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 256

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 257 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 316

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 317 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 353


>gi|189403970|ref|ZP_02786340.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|217327202|ref|ZP_03443285.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|301026864|ref|ZP_07190263.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 196-1]
 gi|301647674|ref|ZP_07247468.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 146-1]
 gi|189368305|gb|EDU86721.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|217319569|gb|EEC27994.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|260448673|gb|ACX39095.1| Ribonucleoside-diphosphate reductase [Escherichia coli DH1]
 gi|299879524|gb|EFI87735.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 196-1]
 gi|301074204|gb|EFK89010.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 146-1]
 gi|326339582|gb|EGD63393.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. 1125]
          Length = 393

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 25  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 81

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 82  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 141

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 142 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 201

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 202 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 260

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 261 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 320

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 321 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 357


>gi|42543295|pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-D84e (D84e
           Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
           Reductase)
 gi|42543296|pdb|1PM2|B Chain B, Crystal Structure Of Manganese Substituted R2-D84e (D84e
           Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
           Reductase)
          Length = 339

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 7   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    ES+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 64  ALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F    NP PW++  +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWL 339


>gi|325578589|ref|ZP_08148689.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159825|gb|EGC71955.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 376

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/336 (20%), Positives = 127/336 (37%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG--------------- 177
           +II ++  D   +F+       I  +A     Y   L   S                   
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYAVDGKECV 184

Query: 178 -TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            T    ++ L    +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +             +E +Q++  +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKEWADYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F    NP PW++  +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFGARSNPIPWINAWL 340


>gi|145298925|ref|YP_001141766.1| ribonucleotide-diphosphate reductase subunit beta [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142851697|gb|ABO90018.1| ribonucleoside-diphosphate reductase, beta subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 377

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 137/334 (41%), Gaps = 26/334 (7%)

Query: 21  DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            + M   +S +V +    K+           +  W P EV +  D   ++    L   E+
Sbjct: 15  KEPMFFGQSVNVARYDQQKHEVFERLIEKQLSFFWRPEEVDVSHDRIDYQ---ALPPHEQ 71

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II ++ 
Sbjct: 72  HIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWAFSETIHSRSYTHIIRNIV 131

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPS----------------FTTGTKDADQ 183
            + G++F+       I  +A     +   L   +                  T T    +
Sbjct: 132 NNPGQVFDDIVTNEQILKRAGSISCFYDDLIEATALYNLHGEGTHSVAGQMRTITLRELK 191

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L    +     E + FY  FA   +      M G A+  + I RDE+LHL     ++N
Sbjct: 192 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHMLN 251

Query: 244 QIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
            ++   ++P +   + E +Q    +  EA + E  +A      G  +GLN     QY+++
Sbjct: 252 LMRTGQDDPEMAEISAECEQACFEIFKEAAIQEKEWAEYLFQDGSMIGLNKDILCQYVEY 311

Query: 299 IANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK 331
           I N R + +GL+P F    +NP PW++  +    
Sbjct: 312 ITNLRMNAVGLQPAFAGAKQNPIPWINTWLSSDN 345


>gi|317164437|gb|ADV07978.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 377

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 134/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 7   PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 64  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWVETWSFSETIHSRSY 123

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   ITA+A     Y   L   +                  
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPV 183

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T   +   ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E Q +   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   F+   +NP PW++  +    
Sbjct: 303 EILSQYVEYITNLRMQAVGLSAGFEGANQNPIPWINAWLSSDN 345


>gi|329298015|ref|ZP_08255351.1| ribonucleotide-diphosphate reductase subunit beta [Plautia stali
           symbiont]
          Length = 376

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 136/336 (40%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------T 176
           +II ++  D  ++F+       I A+A    +Y   L   +                  T
Sbjct: 125 HIIRNIVNDPSQVFDDIVTNEQILARAQDISKYYDDLIEMTNYWHLLGEGTHQVAGKSVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
               A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++        KE     + +   +  +A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLMRTGEDDPEMKEIAAECRDECFDLFKKAAEQEKEWAEYLFSGGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 305 LCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340


>gi|161502570|ref|YP_001569682.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160863917|gb|ABX20540.1| hypothetical protein SARI_00614 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 376

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 138/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGVGRHTVNGKTIT 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +  +++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNLLRSGVDDPEMADIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|255026984|ref|ZP_05298970.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL J2-003]
          Length = 336

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 140/318 (44%), Gaps = 19/318 (5%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N  +  +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+   
Sbjct: 25  IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
              +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    
Sbjct: 82  DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F + R  P+I  +    +       +        +   E L    +   + EG+ 
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGIN 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + 
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEY 252

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
           +      A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N 
Sbjct: 253 THEAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311

Query: 320 FPWMSEVID--LKKEKNF 335
             W+    D   + + +F
Sbjct: 312 MTWIKAYADNFTETKTDF 329


>gi|329119976|ref|ZP_08248648.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463889|gb|EGF10203.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 384

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/342 (20%), Positives = 136/342 (39%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +++ +   + M   +  +V +    K+    +      +  W P E+ +  D   +    
Sbjct: 15  KQKNDALKEPMFFGQPVNVARYDQQKFEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 71

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 72  NLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 131

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-----------------SFT 175
           +II ++  D   +F+   +   I A+A     Y   L                    +  
Sbjct: 132 HIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYYNLLGEGVHQVGGKTVV 191

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 192 VKLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 250

Query: 236 NFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++             E Q +   +  +A   E  +A      G  +GLN  
Sbjct: 251 TSTQHMLNLMRAGADDPEMAEIAVELQDECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKD 310

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
              QY+++I N R   +GL+P F  + +NP PW++  +    
Sbjct: 311 ILCQYVEYITNHRMIAVGLDPAFPASNQNPIPWINAWLSSDN 352


>gi|332290530|ref|YP_004421382.1| ribonucleotide-diphosphate reductase subunit beta [Gallibacterium
           anatis UMN179]
 gi|330433426|gb|AEC18485.1| ribonucleotide-diphosphate reductase subunit beta [Gallibacterium
           anatis UMN179]
          Length = 376

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 132/337 (39%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   ++S  
Sbjct: 8   QHKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQS-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 66  -LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+       I  +A     Y   L   S                 + 
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNQEIIKRARDISAYYDDLIRDSQLYSLYGEGTYTVDGKEYQ 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  ++I RDE+LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N +             +E QQ++  +   A   E  +A+     G  +GLN  
Sbjct: 244 TGTQHILNIMAAGQDDPEMAEIAEECQQEAYDLFVAAAEQEKEWANYLFKDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL   F    NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLPLPFTTRSNPIPWINAWL 340


>gi|261493906|ref|ZP_05990416.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261495801|ref|ZP_05992236.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308535|gb|EEY09803.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310439|gb|EEY11632.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 376

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSQDRIDYAQ-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 66  -LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS----------FTTGTKDAD 182
           +II ++  D   +F+       I  +A     Y   L   S          +    K  +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYSLYGEGSYQVDGKTCE 184

Query: 183 QEFL------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +   N         +E +Q++  +   A   E A+A      G  +GLN   
Sbjct: 245 GTQHILNIMTYGNDDPEMAEIARECRQEAYELFLSAAEQEKAWAEYLFKDGSMIGLNRDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   FK   NP PW++  +
Sbjct: 305 LVQYIEYITNIRMQAVGLPLPFKARSNPIPWINAWL 340


>gi|254361270|ref|ZP_04977413.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           PHL213]
 gi|153092766|gb|EDN73809.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
           PHL213]
          Length = 376

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSQDRIDYAQ-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 66  -LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS----------FTTGTKDAD 182
           +II ++  D   +F+       I  +A     Y   L   S          +    K  +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYSLYGEGSYQVDGKTCE 184

Query: 183 QEFL------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +   N         +E +Q++  +   A   E A+A      G  +GLN   
Sbjct: 245 GTQHILNIMAYGNDDPEMAEIARECRQEAYELFLSAAEQEKAWAEYLFKDGSMIGLNRDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   FK   NP PW++  +
Sbjct: 305 LVQYIEYITNIRMQAVGLPLPFKARSNPIPWINAWL 340


>gi|170682190|ref|YP_001744431.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           SMS-3-5]
 gi|170519908|gb|ACB18086.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli SMS-3-5]
 gi|315285847|gb|EFU45287.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 110-3]
 gi|315298059|gb|EFU57328.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 16-3]
          Length = 393

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 25  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 81

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 82  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 141

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 142 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 201

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 202 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 260

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 261 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 320

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 321 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 357


>gi|300897697|ref|ZP_07116095.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 198-1]
 gi|301022393|ref|ZP_07186277.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 69-1]
 gi|331683911|ref|ZP_08384507.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H299]
 gi|300358575|gb|EFJ74445.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 198-1]
 gi|300397543|gb|EFJ81081.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 69-1]
 gi|323967677|gb|EGB63089.1| ribonucleotide reductase [Escherichia coli M863]
 gi|331078863|gb|EGI50065.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H299]
          Length = 393

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 25  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 81

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 82  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 141

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 142 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 201

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 202 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 260

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 261 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 320

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 321 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 357


>gi|293392273|ref|ZP_06636607.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952807|gb|EFE02926.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 376

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/336 (20%), Positives = 129/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
           +II ++  +   +F+       I  +A     Y   L   S         T T D  +  
Sbjct: 125 HIIRNIVNNPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKECV 184

Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           +             +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VSLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +             +E +Q++  +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNIMAAGQDDPEMAKIAEECKQEAYDLFLAAAEQEKDWADYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340


>gi|304445703|pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
           E. Coli
 gi|304445704|pdb|2XOF|B Chain B, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
           E. Coli
          Length = 375

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 7   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +  
Sbjct: 64  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSXT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339


>gi|283786035|ref|YP_003365900.1| ribonucleoside-diphosphate reductase 1 beta chain [Citrobacter
           rodentium ICC168]
 gi|282949489|emb|CBG89102.1| ribonucleoside-diphosphate reductase 1 beta chain [Citrobacter
           rodentium ICC168]
          Length = 376

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 134/336 (39%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
           +II ++  D   +F+       I  +A     Y   L   +      D     +      
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLDEGTHTVNGKTVT 184

Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244

Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +   ++P +    +E +Q+   +  +A L E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAALQEKEWADYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|262402402|ref|ZP_06078963.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           sp. RC586]
 gi|262351184|gb|EEZ00317.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           sp. RC586]
          Length = 360

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 124/316 (39%), Gaps = 25/316 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 16  KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 72

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 73  RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHILK 132

Query: 158 KANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFVFYV---------------VFEGMWF 201
           +A     Y   L   +       +   +   +     +                 E + F
Sbjct: 133 RAKDIAHYYDDLIQLTNDYHRYGEGQHQINGETVNVSLKNLKKKLYLCLMSVNALEAIRF 192

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++            +E 
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEEC 252

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315
           +Q+S  +  EA   E  +A      G  +GLN     QY+++I N R   +GLEP +   
Sbjct: 253 KQESFDLFKEAAEQEKEWAAYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPTA 312

Query: 316 TENPFPWMSEVIDLKK 331
           T NP PW++  +    
Sbjct: 313 TTNPIPWINAWLSSDN 328


>gi|304398198|ref|ZP_07380072.1| ribonucleotide reductase [Pantoea sp. aB]
 gi|304354064|gb|EFM18437.1| ribonucleotide reductase [Pantoea sp. aB]
          Length = 376

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 136/336 (40%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF--------TTGTKDADQE 184
           +II ++  D   +F+       I A+A    +Y   L   +         T    D    
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDLIEMTNYWHQLGEGTHKVNDKQVV 184

Query: 185 FLQDLFVFYVVF--------EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                    +          E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +   ++P +     E +++   +  +A L E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLLRSGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 305 LCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340


>gi|157144813|ref|YP_001452132.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter
           koseri ATCC BAA-895]
 gi|157082018|gb|ABV11696.1| hypothetical protein CKO_00540 [Citrobacter koseri ATCC BAA-895]
          Length = 376

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 137/336 (40%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++S  
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQS-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 66  -LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y   L                 +    T
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISHYYDELIEMTSYWHLLGEGTHNVNGKTVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
               A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLT 244

Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +  I++P +    +E +Q    +  +A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLLRSGIDDPEMAEIAEESKQACYDLFVQAAQQEKEWADYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GLE  F+   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLELPFQTRSNPIPWINTWL 340


>gi|260913913|ref|ZP_05920387.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC
           43325]
 gi|260632000|gb|EEX50177.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC
           43325]
          Length = 376

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/336 (20%), Positives = 131/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDADQEFL- 186
           +II ++  D   +F+       I  +A     Y   L   +     +  GT + D +   
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEEIIKRAKDISCYYDDLIRDTQLYTLYGEGTYNVDGQECT 184

Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +             +E +Q++  +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNIMASGQDDPEMAEIVEECKQEAYDLFVAAAEQEKEWASYLFKDGSMIGLNRDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340


>gi|261867684|ref|YP_003255606.1| ribonucleotide-diphosphate reductase subunit beta [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413016|gb|ACX82387.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 376

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
           +II ++  D   +F+       I  +A     Y   L   S         T T D  +  
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKECV 184

Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           +             +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VSLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +             +E +Q++  +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKDWADYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340


>gi|212716021|ref|ZP_03324149.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661388|gb|EEB21963.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM
           16992]
          Length = 330

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 132/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    +R+ + D+    +  + N+L   K    W+       N W+P +VP+ +DL 
Sbjct: 1   MAPISVPRQRIKLIDR---VSAINWNKLEDDKDLEVWD---RLTGNFWLPEKVPVSNDLP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
           +W+    +++ E  +  R        +++      +++      P         AF E+V
Sbjct: 55  VWR---AMSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L       E F+   E   +  KA   L Y +  S              
Sbjct: 112 HAKSYSSIFSTLCSTRQIDEAFSWSEENEYLQRKARIVLDYYEGDS-------------- 157

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 158 -PLKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                      E +  +  +L+E    E+ Y         VGL     E+++++  N+  
Sbjct: 217 GLERVSEDKRGELRDYTYDLLNELYDNEVEYTRSLYE--PVGLT-QDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G  ++ D
Sbjct: 274 MNLGYPALFPQEICDVNPSILAALSPNADENHDFFSGSGSSYVMGKSVETD 324


>gi|225351964|ref|ZP_03742987.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157211|gb|EEG70550.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 330

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 133/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    +R+ + D+    +  + N+L   K    W+       N W+P +VP+ +DL 
Sbjct: 1   MAPISVPRQRIKLIDR---VSAINWNKLEDDKDLEVWD---RLTGNFWLPEKVPVSNDLP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
           +W++   +++ E  +  R        +++      +++      P         AF E+V
Sbjct: 55  VWRT---MSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L       E F+   E   +  KA   L Y +  S              
Sbjct: 112 HAKSYSSIFSTLCSTRQIDEAFSWSEENEYLQRKARIVLDYYEGDS-------------- 157

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 158 -PLKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                      E +  +  +L+E    E+ Y         VGL     E+++++  N+  
Sbjct: 217 GLELVSEDKRGELRDYTYDLLNELYDNEVEYTRSLYE--PVGLT-QDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G  ++ D
Sbjct: 274 MNLGYPALFPQEICDVNPSILAALSPNADENHDFFSGSGSSYVMGKSVETD 324


>gi|308187586|ref|YP_003931717.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans
           C9-1]
 gi|308058096|gb|ADO10268.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans
           C9-1]
          Length = 376

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 136/336 (40%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF--------TTGTKDADQE 184
           +II ++  D   +F+       I A+A    +Y   L   +         T    D    
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDLIEMTNYWHQLGEGTHQVNDKQVV 184

Query: 185 FLQDLFVFYVVF--------EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                    +          E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +   ++P +     E +++   +  +A L E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLLRSGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 305 LCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340


>gi|258544274|ref|ZP_05704508.1| ribonucleoside-diphosphate reductase, beta subunit [Cardiobacterium
           hominis ATCC 15826]
 gi|258520512|gb|EEV89371.1| ribonucleoside-diphosphate reductase, beta subunit [Cardiobacterium
           hominis ATCC 15826]
          Length = 325

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/320 (20%), Positives = 127/320 (39%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
             Q+ P +Y    E   +  +++W+ TE     D+  +K+   +T  ER  + R +   +
Sbjct: 9   RIQIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYKTV--ITPRERTALTRAMLAIS 66

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +YR+   PE        A  E  H   + +++  LG++  E+F+   
Sbjct: 67  QVEVSV-KRFWGDLYRYFPKPEIDDVGGTFAESEIRHKDAYSFLLEKLGMN--EMFSQIT 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P++  +  +   + +               + F+  L +F +  E +  +  F  I+S
Sbjct: 124 EYPALMRRIEYMEDFMRD---------KDIGRERFVLSLVMFSLFVEHISLFGQFLIIMS 174

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   I+ E+P L+T +F  + + + + A 
Sbjct: 175 FNKHRNLFKGISNAVEATSKEEEIHGRFGIALYGIIRDEHPRLFTPDFYDELQQLANHAL 234

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
             E          G +  +   + E Y+    N     +G+   +           W   
Sbjct: 235 EAERGILRWIFEDGDLDFITLDTVENYITNRYNNSLEILGINAPYLVDTKKLRETEWFDI 294

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 295 EILSGKEGDFFYKRSTDYSK 314


>gi|61680624|pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
           Reductase R2 Protein From E. Coli
 gi|61680625|pdb|1YFD|B Chain B, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
           Reductase R2 Protein From E. Coli
          Length = 375

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 7   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +  
Sbjct: 64  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSHT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339


>gi|317048919|ref|YP_004116567.1| ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
 gi|316950536|gb|ADU70011.1| Ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
          Length = 376

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 134/336 (39%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF--------------TTGT 178
           +II ++  D   +F+       I A+A    +Y   L   +                T T
Sbjct: 125 HIIRNIVNDPSLVFDDIVTNEQILARAQDISKYYDDLIEMTNYWHLLGEGTHQVAGKTVT 184

Query: 179 KDADQEFLQDLFVFYVV--FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            D      Q       V   E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VDLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++        K    E + +   +  +A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLMRTGEDDPEMKEIAAECRDECYDLFKKAAEQEKEWAEYLFSGGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 305 LCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340


>gi|15602584|ref|NP_245656.1| ribonucleotide-diphosphate reductase subunit beta [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|12721013|gb|AAK02803.1| NrdB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 376

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 131/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDADQEFL- 186
           +II ++  D   +F+       I  +A     Y   L   S     +  GT + D +   
Sbjct: 125 HIIRNIVNDPSVIFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYTLYGEGTYNVDGQDCV 184

Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +             +E +Q++  +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNIMASGQDDPEMAEIVEECKQEAYDLFVAAAEQEKEWADYLFKDGSMIGLNRDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340


>gi|205353394|ref|YP_002227195.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273175|emb|CAR38137.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628485|gb|EGE34828.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 376

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    +  
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKTVV 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              +D  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +  +++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|296455120|ref|YP_003662264.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296184552|gb|ADH01434.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 330

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 131/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +  R        +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y +                +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y      +  VGL     E+++++  N+  
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGLT-DDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    S   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILASLSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|311085920|gb|ADP66002.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086491|gb|ADP66572.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087626|gb|ADP67705.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 359

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/315 (21%), Positives = 122/315 (38%), Gaps = 24/315 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P E+ +  D   ++    L D+E+ +   NL +    +S+  
Sbjct: 16  KYKIFEQLIEKQLSFFWRPEEIDLSRDRIDFQ---NLPDNEKHIFISNLKYQTLLDSIQG 72

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++      +F+      +I  
Sbjct: 73  RSPNIAFLPIISIPELETWIETWSFSETIHSRSYTHIIRNIVNCPSLVFDDIISNKNIYD 132

Query: 158 KANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFVFYV---------------VFEGMWF 201
           +A     Y   L + + +     +             +               V E + F
Sbjct: 133 RAQNISIYYDELINLTSYWHLLGEGIHLINGKKIHINLRFLKKRLYLCLISVNVLEAIRF 192

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV----INQIKIENPHLWTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     +     N    EN      E 
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHILNLLSNIKNNENMEDVVLEC 252

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           ++++  +   A   E  +A      G  +GLN     QY+++I N R H IG +  FK  
Sbjct: 253 KEEAINIFISAAQQEKKWASYLFKSGSMLGLNKDILCQYIEYITNIRMHAIGFKMPFKKQ 312

Query: 317 ENPFPWMSEVIDLKK 331
            NP PW+++ +    
Sbjct: 313 SNPIPWINDWLTSDN 327


>gi|56412825|ref|YP_149900.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197361758|ref|YP_002141394.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56127082|gb|AAV76588.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197093234|emb|CAR58679.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
          Length = 376

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    +  
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIETTSYWHLLGEGTHTVNGKTVV 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +  +++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|23465253|ref|NP_695856.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           longum NCC2705]
 gi|23325884|gb|AAN24492.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium
           longum NCC2705]
          Length = 330

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 130/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +  R        +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y +                +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y         VGL     E+++++  N+  
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDC--VGLT-DDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|145633337|ref|ZP_01789068.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           influenzae 3655]
 gi|144986183|gb|EDJ92773.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           influenzae 3655]
          Length = 376

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 130/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
           +II ++  D   +F+       I  +A     Y   L   S         T T D  +  
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYGEGTYTVDGKKCV 184

Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           +             +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +             +E +Q++  +   A   E A+A      G  +GLN   
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNRDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340


>gi|261211025|ref|ZP_05925315.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           sp. RC341]
 gi|260840000|gb|EEX66600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           sp. RC341]
          Length = 360

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 124/316 (39%), Gaps = 25/316 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 16  KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 72

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 73  RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 132

Query: 158 KANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFVFYV---------------VFEGMWF 201
           +A     Y   L   +       +   +   +     +                 E + F
Sbjct: 133 RAKDIAHYYDDLIQLTNDYHRYGEGQHQINGETINVSLKNLKKKLYLCLMSVNALEAIRF 192

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++            +E 
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEEC 252

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315
           +Q+S  +  EA   E  +A      G  +GLN     QY+++I N R   +GLEP +   
Sbjct: 253 KQESFDLFKEAAEQEKEWAAYLFKDGSMIGLNRDILCQYVEYITNIRMQAVGLEPAYPTA 312

Query: 316 TENPFPWMSEVIDLKK 331
           T NP PW++  +    
Sbjct: 313 TTNPIPWINAWLSSDN 328


>gi|16273547|ref|NP_439802.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae Rd KW20]
 gi|68250262|ref|YP_249374.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 86-028NP]
 gi|145629252|ref|ZP_01785051.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 22.1-21]
 gi|145631490|ref|ZP_01787259.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae R3021]
 gi|145639184|ref|ZP_01794791.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittII]
 gi|145641092|ref|ZP_01796673.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae R3021]
 gi|260581255|ref|ZP_05849073.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae RdAW]
 gi|260582634|ref|ZP_05850423.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae NT127]
 gi|319776092|ref|YP_004138580.1| ribonucleoside-diphosphate reductase subunit beta [Haemophilus
           influenzae F3047]
 gi|319896901|ref|YP_004135096.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
           influenzae F3031]
 gi|329123256|ref|ZP_08251824.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           aegyptius ATCC 11116]
 gi|1172943|sp|P43755|RIR2_HAEIN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|1574510|gb|AAC23306.1| ribonucleoside diphosphate reductase, beta chain (nrdB)
           [Haemophilus influenzae Rd KW20]
 gi|68058461|gb|AAX88714.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
           influenzae 86-028NP]
 gi|144978755|gb|EDJ88478.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 22.1-21]
 gi|144982920|gb|EDJ90433.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae R3021]
 gi|145271746|gb|EDK11656.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittII]
 gi|145274253|gb|EDK14118.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 22.4-21]
 gi|260092082|gb|EEW76027.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae RdAW]
 gi|260094306|gb|EEW78205.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae NT127]
 gi|301170418|emb|CBW30024.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           [Haemophilus influenzae 10810]
 gi|309750762|gb|ADO80746.1| Ribonucleoside diphosphate reductase 1, beta subunit [Haemophilus
           influenzae R2866]
 gi|309972945|gb|ADO96146.1| Ribonucleoside diphosphate reductase 1, beta subunit [Haemophilus
           influenzae R2846]
 gi|317432405|emb|CBY80760.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
           influenzae F3031]
 gi|317450683|emb|CBY86903.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
           influenzae F3047]
 gi|327471465|gb|EGF16913.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           aegyptius ATCC 11116]
          Length = 376

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 130/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
           +II ++  D   +F+       I  +A     Y   L   S         T T D  +  
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYGEGTYTVDGKECV 184

Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           +             +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +             +E +Q++  +   A   E A+A      G  +GLN   
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNRDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340


>gi|193062401|ref|ZP_03043496.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E22]
 gi|192932067|gb|EDV84666.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E22]
          Length = 393

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 136/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 25  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 81

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 82  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 141

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 142 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 201

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 202 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 260

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E + +   +  +A   E  +A      G  +GLN  
Sbjct: 261 TGTQHMLNLLRSGADDPEMAEIAEECKLECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 320

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 321 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 357


>gi|3891570|pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
           Coli
 gi|3891571|pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
           Coli
          Length = 340

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 7   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS +F 
Sbjct: 64  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339


>gi|3891582|pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli
 gi|3891583|pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli
          Length = 340

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 7   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 64  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339


>gi|113970253|ref|YP_734046.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
           MR-4]
 gi|114047558|ref|YP_738108.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
           MR-7]
 gi|113884937|gb|ABI38989.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella sp. MR-4]
 gi|113889000|gb|ABI43051.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella sp. MR-7]
          Length = 376

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 133/337 (39%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   +   + M   +S +V +    KY    +      +  W P EV +  D   + S  
Sbjct: 8   QTPNDATREPMFFGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDYNS-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 66  -LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+       I  +A    +Y   L   +                   
Sbjct: 125 HIIRNIVNDPSVIFDDIVVNQEILRRATDIAEYYDHLIKLTQVYHLLGEGTHVIDGEPIE 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
             T+   +     +     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNTRTLKKALYLCMMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
           N    ++  ++   ++P +     E QQ++  +  +A   E  +A      G  +GLN  
Sbjct: 244 NSTQHILTIMQAGKDDPEMGEIAAECQQEAYNLFLKAAEQEKEWAKYLFKDGSMIGLNEQ 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N+R   + L   +    NP PWM   +
Sbjct: 304 ILCQYVEYITNQRMKSVNLPQPYAEQSNPLPWMKNWL 340


>gi|213693323|ref|YP_002323909.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524784|gb|ACJ53531.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320459505|dbj|BAJ70126.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 330

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 131/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +  R        +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y +                +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y      +  VGL     E+++++  N+  
Sbjct: 217 GIAQLGDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGLT-DDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    S   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILASLSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|296103863|ref|YP_003614009.1| ribonucleotide-diphosphate reductase beta subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058322|gb|ADF63060.1| ribonucleotide-diphosphate reductase beta subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 376

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 135/336 (40%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y   L                 +    T
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMTSYWHLLGEGTHNVNGKTVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
               A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLT 244

Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +   ++P +    +E +Q+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|251792451|ref|YP_003007177.1| ribonucleotide-diphosphate reductase subunit beta [Aggregatibacter
           aphrophilus NJ8700]
 gi|315634378|ref|ZP_07889665.1| ribonucleotide-diphosphate reductase beta subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|247533844|gb|ACS97090.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
           aphrophilus NJ8700]
 gi|315476968|gb|EFU67713.1| ribonucleotide-diphosphate reductase beta subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 376

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
           +II ++  D   +F+       I  +A     Y   L   S         T T D  +  
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKECV 184

Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           +             +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +             +E +Q++  +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKDWADYLFKDGSMIGLNRDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340


>gi|117619492|ref|YP_856857.1| ribonucleotide-diphosphate reductase subunit beta [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560899|gb|ABK37847.1| ribonucleoside-diphosphate reductase, beta subunit [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 377

 Score =  156 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 130/334 (38%), Gaps = 26/334 (7%)

Query: 21  DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            + M   +S +V +    K+           +  W P EV +  D   ++    L   E+
Sbjct: 15  KEPMFFGQSVNVARYDQQKHEVFERLIEKQLSFFWRPEEVDVSHDRIDFQ---ALPPHEQ 71

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II ++ 
Sbjct: 72  HIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWAFSETIHSRSYTHIIRNIV 131

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPS----------------FTTGTKDADQ 183
               ++F+       I  +A     +   L   +                  T T    +
Sbjct: 132 NTPAQVFDDIVTNEQILKRAGSISHFYDDLIEATALYNLHGEGTHRVAGRDVTITLRELK 191

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           + L    +     E + FY  FA   +      M G A+  + I RDE+LHL     ++N
Sbjct: 192 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHMLN 251

Query: 244 QIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
            ++             E +Q    +  EA + E  +A      G  +GLN     QY+++
Sbjct: 252 LMRSGQDDPEMAEIAAECEQACFELFKEAAIQEKEWAEYLFQDGSMIGLNKDILCQYVEY 311

Query: 299 IANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK 331
           I N R + +GL+P F    +NP PW++  +    
Sbjct: 312 ITNLRMNAVGLQPAFAGAKQNPIPWINTWLSSDN 345


>gi|16765605|ref|NP_461220.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|62180851|ref|YP_217268.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161613001|ref|YP_001586966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167549728|ref|ZP_02343487.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167992612|ref|ZP_02573709.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168237293|ref|ZP_02662351.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168242393|ref|ZP_02667325.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261709|ref|ZP_02683682.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466025|ref|ZP_02699895.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168817991|ref|ZP_02829991.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194442577|ref|YP_002041539.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194449379|ref|YP_002046332.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194735273|ref|YP_002115349.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197247637|ref|YP_002147234.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197262505|ref|ZP_03162579.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198242288|ref|YP_002216347.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200387602|ref|ZP_03214214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204929071|ref|ZP_03220214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|207857697|ref|YP_002244348.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|213161593|ref|ZP_03347303.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|224583238|ref|YP_002637036.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|1172945|sp|P37427|RIR2_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta;
           AltName: Full=Protein B2; AltName: Full=Protein R2;
           AltName: Full=Ribonucleotide reductase 1
 gi|510349|emb|CAA51453.1| nrdB [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420817|gb|AAL21179.1| ribonucleoside-diphosphate reductase 1, beta subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|62128484|gb|AAX66187.1| ribonucleoside-diphosphate reductase 1, beta subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161362365|gb|ABX66133.1| hypothetical protein SPAB_00707 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401240|gb|ACF61462.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194407683|gb|ACF67902.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194710775|gb|ACF89996.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195631367|gb|EDX49927.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197211340|gb|ACH48737.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197240760|gb|EDY23380.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289678|gb|EDY29041.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197936804|gb|ACH74137.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199604700|gb|EDZ03245.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204321615|gb|EDZ06814.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205325266|gb|EDZ13105.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205329222|gb|EDZ15986.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205338588|gb|EDZ25352.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205344845|gb|EDZ31609.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349363|gb|EDZ35994.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206709500|emb|CAR33844.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|224467765|gb|ACN45595.1| ribonucleotide-diphosphate reductase beta subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|261247486|emb|CBG25313.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994368|gb|ACY89253.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301158836|emb|CBW18349.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913268|dbj|BAJ37242.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|320086715|emb|CBY96487.1| ribonucleoside diphosphage reductase 1, beta subunit, B2
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223022|gb|EFX48093.1| Ribonucleotide reductase of class Ia aerobic, beta subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|322617030|gb|EFY13936.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322617664|gb|EFY14563.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322624706|gb|EFY21535.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322630255|gb|EFY27025.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634436|gb|EFY31169.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322639146|gb|EFY35838.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322640143|gb|EFY36809.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322645769|gb|EFY42293.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651544|gb|EFY47919.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656105|gb|EFY52404.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659457|gb|EFY55704.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322665919|gb|EFY62102.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669843|gb|EFY65984.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322673828|gb|EFY69925.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322678586|gb|EFY74642.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322683618|gb|EFY79632.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322687694|gb|EFY83664.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|322715327|gb|EFZ06898.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|323130608|gb|ADX18038.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|323196209|gb|EFZ81366.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323198377|gb|EFZ83479.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204185|gb|EFZ89196.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323208571|gb|EFZ93510.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212337|gb|EFZ97160.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323218256|gb|EGA02966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323222986|gb|EGA07335.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227421|gb|EGA11586.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323232251|gb|EGA16354.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323235716|gb|EGA19800.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323241124|gb|EGA25160.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323244866|gb|EGA28868.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248577|gb|EGA32508.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251597|gb|EGA35465.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255474|gb|EGA39237.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263076|gb|EGA46622.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323268136|gb|EGA51613.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270771|gb|EGA54209.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326624097|gb|EGE30442.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|332989211|gb|AEF08194.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 376

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    +  
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKTVV 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +  +++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|163748931|ref|ZP_02156182.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella
           benthica KT99]
 gi|161331307|gb|EDQ02195.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella
           benthica KT99]
          Length = 376

 Score =  156 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 83/346 (23%), Positives = 135/346 (39%), Gaps = 37/346 (10%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           NN  L P+  G+  VNV       AR DV      KY    +      +  W P EV + 
Sbjct: 11  NNACLEPMFMGQS-VNV-------ARYDVQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F
Sbjct: 58  KDKIDY---AALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS------------ 170
            E +HS ++ +II ++  D   +F+   +   I  +A    QY   L             
Sbjct: 115 SETIHSRSYTHIIRNIVNDPSIIFDDIVKNEEILKRATDIAQYYDDLILLTQAFHLHGEG 174

Query: 171 ----SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
               +      T+   ++ L    V   V E + FY  FA   +    N M G A+  + 
Sbjct: 175 THIVNGKELLVTQRTIKKSLYLCMVSVNVLEAIRFYVSFACSFAFAERNVMEGNAKIIRL 234

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS----RTMLHEATLLEIAYAHETMPK 282
           I RDE+LHLN    ++  ++         E  ++       +  +A   E  +A      
Sbjct: 235 IARDEALHLNSTQHILKIMRAGVDDPEMGEIAEECEQLAYDIFVKAAEQEKEWAQYLFKD 294

Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           G  +GLN     QY+++I N R   + L P +    NP PWM   +
Sbjct: 295 GSMIGLNEAILCQYVEYITNERMKSVNLTPHYDEITNPLPWMKNWL 340


>gi|1941986|pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
 gi|1941987|pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
          Length = 340

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 7   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 64  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVAFACSFAFAERELMEGNAKIIRLIARDEALHL 242

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339


>gi|332974578|gb|EGK11498.1| ribonucleotide-diphosphate reductase beta subunit [Kingella kingae
           ATCC 23330]
          Length = 384

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 132/338 (39%), Gaps = 28/338 (8%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           N   + M   +  +V +    KY    +      +  W P EV +  D   +     L D
Sbjct: 19  NPLTEPMFFGQPVNVARYDQQKYEVFEKLIEKQISFFWRPEEVDLSRDRIDY---ANLPD 75

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +     +S PE   ++   AF E +HS ++ +II 
Sbjct: 76  HEKHIFISNLKYQTLLDSIQGRSPNVGFLPLVSIPELETWIETWAFFETIHSRSYTHIIR 135

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FTTGTK 179
           ++  D   +F+   +   I A+A     Y   L   +                  T   +
Sbjct: 136 NIVNDPSVVFDDIVQNDYIIARAEDIACYYDDLIEYTQYFNLLGEGKHTVNGKEITISLR 195

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
           +  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LHL    
Sbjct: 196 ELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQ 254

Query: 240 DVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
            ++N ++     L       E Q +   +  +A   E  +A      G  +GLN     Q
Sbjct: 255 HMLNLMRSGVDDLDMAEIAAELQDECFELFKKAAEQEKEWAAYLFKDGSMIGLNKDILCQ 314

Query: 295 YMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
           Y+++I N R   +GL+  F   T+NP PW++  +    
Sbjct: 315 YVEYITNHRMLAVGLQAAFPQATQNPIPWINAWLSSDN 352


>gi|238021387|ref|ZP_04601813.1| hypothetical protein GCWU000324_01286 [Kingella oralis ATCC 51147]
 gi|237868367|gb|EEP69373.1| hypothetical protein GCWU000324_01286 [Kingella oralis ATCC 51147]
          Length = 384

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 134/343 (39%), Gaps = 28/343 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            +   N   + M   +  +V +    KY    +      +  W P EV +  D   +   
Sbjct: 14  PKTPNNALLEPMFLGQPVNVARYDQQKYETFEKLIEKQISFFWRPEEVDLSRDRIDY--- 70

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  + +   +S PE   ++   +F E +HS ++
Sbjct: 71  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVGLLPLVSLPELETWIETWSFFETIHSRSY 130

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-----------------SF 174
            +II ++  D   +F+   +   I A+A     Y   L                    + 
Sbjct: 131 THIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYFNLLGVGEHRVNGKTI 190

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
               ++  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 191 VVSERELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E Q +   +  +A   E  +A      G  +GLN 
Sbjct: 250 LTSTQHMLNLMRGGAEGAEWAEIAAELQNECFELFKKAAEQEKEWAEYLFKDGSMIGLNK 309

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
               QY+++I N R   +GL+P F+  T+NP PW++  +    
Sbjct: 310 DILCQYVEYITNARMLAVGLQPAFEKATQNPIPWINTWLSSDN 352


>gi|168229641|ref|ZP_02654699.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471700|ref|ZP_03077684.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|238913487|ref|ZP_04657324.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|194458064|gb|EDX46903.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205335835|gb|EDZ22599.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 376

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 139/337 (41%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-----------------SSPSFT 175
           +II ++  D   +F+       I  +A     Y   L                 +S +  
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNSKTVV 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +  +++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|113461104|ref|YP_719172.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           somnus 129PT]
 gi|170717681|ref|YP_001784756.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           somnus 2336]
 gi|112823147|gb|ABI25236.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Haemophilus somnus 129PT]
 gi|168825810|gb|ACA31181.1| Ribonucleoside-diphosphate reductase [Haemophilus somnus 2336]
          Length = 376

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M      +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNNQLLEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG--------------- 177
           +II ++  D   +F+       I  +A     Y   L   S   G               
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYGLYGEGTYTVDGKACK 184

Query: 178 -TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            T    +  L    +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +             +E +Q++  +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYELFVAAAEQEKEWADYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340


>gi|16761204|ref|NP_456821.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29141101|ref|NP_804443.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|25285831|pir||AD0791 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503503|emb|CAD07510.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136727|gb|AAO68292.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 376

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    +  
Sbjct: 125 HIIRNIVNDPAIVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKTVV 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +  +++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|256422447|ref|YP_003123100.1| ribonucleotide reductase [Chitinophaga pinensis DSM 2588]
 gi|256037355|gb|ACU60899.1| ribonucleotide reductase [Chitinophaga pinensis DSM 2588]
          Length = 324

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 125/320 (39%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
             Q  P +Y    +   +   + W+  EV    D   + S   L   ER  ++ +L   A
Sbjct: 7   RLQYKPFEYPEVLQFTEAINKSFWVHAEVDFTADTQDFHSH--LNPAERTAVRNSLLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E     +    +Y HL  PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QIEV-AVKSFWGNLYNHLPKPEMNGLGSTFAECEFRHSEAYSRLVEVLGYNSQ--FEKLV 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           EVP I  +  +         S + +       +E+   L +F ++ E +  ++ FA ILS
Sbjct: 122 EVPVIRQRIEYL--------SDALSNAKSTDTREYTISLILFSILIENVSLFSQFAIILS 173

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE +H N GI +IN+I+ E P ++ +    +   ++ E+ 
Sbjct: 174 FTRFKGLMKNVSNIIAWTSVDEQIHANAGIYLINKIREEYPEMFDEATITRVSNLVKESI 233

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
            +E         +G +  ++      +M++ A+    +I L  LF  +     P  W  E
Sbjct: 234 EVESNILDWIFSEGKIDTVSKEHLVNFMKYRADDSLKKINLPALFNISTEDNKPMLWFEE 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +      +FF  R  +Y +
Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313


>gi|152971181|ref|YP_001336290.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206577425|ref|YP_002237361.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
           pneumoniae 342]
 gi|262043285|ref|ZP_06016416.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288934289|ref|YP_003438348.1| ribonucleotide reductase [Klebsiella variicola At-22]
 gi|330000612|ref|ZP_08303755.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
 gi|150956030|gb|ABR78060.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206566483|gb|ACI08259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
           pneumoniae 342]
 gi|259039384|gb|EEW40524.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288889018|gb|ADC57336.1| ribonucleotide reductase [Klebsiella variicola At-22]
 gi|328537954|gb|EGF64133.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
          Length = 376

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 134/329 (40%), Gaps = 27/329 (8%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M   +  +V +    KY    +      +  W P EV +  D   ++    L + E+ 
Sbjct: 16  EPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II ++  
Sbjct: 73  IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVN 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFTTGTKDADQ 183
           D   +F+       I  +A     Y  +L                    + T   ++  +
Sbjct: 133 DPATVFDDIVTNEQIQKRAEGISHYYDSLIEMTSYWHLLGEGTHTVNGKTVTVNLRELKK 192

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           +    L     + E + FY  FA   +      M G A+  + I RDE+LHL     ++N
Sbjct: 193 KLYLCLMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLTGTQHMLN 251

Query: 244 --QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
             +   ++P +    +E +Q+   +   A   E  +A      G  +GLN     QY+++
Sbjct: 252 LLRSGSDDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFRDGSMIGLNKDILCQYVEY 311

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           I N R   +GL+  F+   NP PW++  +
Sbjct: 312 ITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|257454213|ref|ZP_05619483.1| ribonucleoside-diphosphate reductase, beta subunit [Enhydrobacter
           aerosaccus SK60]
 gi|257448386|gb|EEV23359.1| ribonucleoside-diphosphate reductase, beta subunit [Enhydrobacter
           aerosaccus SK60]
          Length = 377

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 139/342 (40%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    K+    +      +  W P E+ +  D   +   +
Sbjct: 8   QTKNDPLLEPMFFGQPVNVARYDQQKFPVFEQLIEKQLSFFWRPEEIDVSKDRLDF---S 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+  E+ +   NL +    +S+   +    +   +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLSVHEQHIFLSNLKYQTLLDSIQGRSPNAVLLPLVSIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
           +II ++  D  ++F+   + P I  +A    ++                    +      
Sbjct: 125 HIIRNVVNDPSKVFDDIVDNPFILERATGIAKFYDELYQLSQLYNLYGEGRHVIDGKPVE 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              +    +    L    V+ E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLRLLKTKLYLCLVAINVL-EAIRFYVSFACSFAFAERKLMEGNAKIIKMIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
           N    +IN  Q   ++P +    ++ QQ++  +  +A   E A+A      G  +GLN  
Sbjct: 244 NGTQHMINLMQWGKDDPDMVEIAQDCQQQAIEIFKDAAEQEKAWAKYLFKNGSMIGLNEN 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK 331
              QY+++I N R   IGL P+F     NP PW++  +    
Sbjct: 304 ILVQYVEYITNLRMDAIGLPPIFAAIKNNPIPWINAWLSSDN 345


>gi|239622882|ref|ZP_04665913.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|312133660|ref|YP_004000999.1| nrdf [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482331|ref|ZP_07941351.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322690138|ref|YP_004209872.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           longum subsp. infantis 157F]
 gi|239514879|gb|EEQ54746.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|291517762|emb|CBK71378.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Bifidobacterium longum subsp. longum F8]
 gi|311772922|gb|ADQ02410.1| NrdF [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916211|gb|EFV37613.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320461474|dbj|BAJ72094.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 330

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 131/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +  R        +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y +                +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y      +  VGL     E+++++  N+  
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGLT-DDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|90412217|ref|ZP_01220223.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           profundum 3TCK]
 gi|90326941|gb|EAS43326.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           profundum 3TCK]
          Length = 377

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 136/335 (40%), Gaps = 28/335 (8%)

Query: 21  DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            + M   +S +V +    K+    +      +  W P EV +  D   +   N L + E+
Sbjct: 15  KEPMFFGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSGDRIDY---NNLPEHEK 71

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +II ++ 
Sbjct: 72  HIFISNLKYQTLLDSIQGRSPNVALLPIVSIPELETWIETWSFSETIHSRSYTHIIRNIV 131

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTL-----------------SSPSFTTGTKDAD 182
            D   +F+   E   I  +A    +Y   L                 +  + T   ++  
Sbjct: 132 NDPAIVFDDIVENDYIIKRAGDISKYYDDLIAATSDYHRLGEGKHTVNGETITVNLREIK 191

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           ++    +     + E + FY  FA   +      M G A+  + I RDE+LHL     ++
Sbjct: 192 KKLYVCMMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHIL 250

Query: 243 NQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQ 297
           N ++  +         +E QQ+   +  EA   E  +A      G  +GLN     QY++
Sbjct: 251 NLLRGRHDDPEMADIAQECQQECFEIFKEAAEQEKEWAEYLFKDGSMIGLNKEILCQYVE 310

Query: 298 FIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
           +I N R   +GL+  +    +NP PW++  +    
Sbjct: 311 YITNLRMKAVGLDQAYPGANQNPIPWINSWLSSDN 345


>gi|319779630|ref|YP_004130543.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Taylorella equigenitalis MCE9]
 gi|317109654|gb|ADU92400.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Taylorella equigenitalis MCE9]
          Length = 377

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 134/341 (39%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   N   + M   +S +V +    KY    +      +  W P E+ +  D   +    
Sbjct: 8   QTPNNALKEPMFFGQSVNVARYDQQKYEIFEKLIEKQLSFFWRPEEIDVSQDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GL D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 65  GLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS----------FTTGTKDAD 182
           +II ++ +D   +F+       I  +A    +Y   L   +               ++  
Sbjct: 125 HIIRNISVDPSSIFDDIVRNKHILERAQDISKYYDELIELTQFYEMFGEGVHNVNGREIK 184

Query: 183 QEFL------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +   V E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VSIYELKKRLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIK--IENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +    ++P +     E + +   +   A   E A+A      G  +GLN   
Sbjct: 245 STQHMLNIMSSGADDPEMAHIASELKNQCFELFKSAAEQEKAWAEYLFKDGSMIGLNKEI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK 331
             QY+++I N R   +GLE  F  ++ NP PW++  +    
Sbjct: 305 LIQYVEYITNIRMSAVGLEEAFPQSKQNPIPWINTWLTSDN 345


>gi|256832970|ref|YP_003161697.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM
           20603]
 gi|256686501|gb|ACV09394.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM
           20603]
          Length = 325

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 131/351 (37%), Gaps = 37/351 (10%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
               ++ + D+       + N++   K    W+       N W+P +VP+ +D+  W + 
Sbjct: 1   MSTGKIKLIDR---VTAINWNRIEDDKDLEVWD---RLVGNFWVPEKVPVSNDIQSWAT- 53

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             LT  E+ +  R        +++      +++      P     L   AF E+VH+ ++
Sbjct: 54  --LTPQEQELTTRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSY 111

Query: 132 QYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
             I ++L       E F    E P +  KA   L+Y +                      
Sbjct: 112 STIFSTLISTPEIDEAFRWSEENPHLQRKAEIILEYYRGDD---------------PLKR 156

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +     
Sbjct: 157 KVASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEAV 216

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                +E +  +  +L+E    E+AY         VGL     ++++++ AN+    +G 
Sbjct: 217 TPERREELKAYTFDLLYELYDNEVAYTESLYDG--VGLT-EDVKKFLRYNANKALLNLGY 273

Query: 310 EPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
           E LF   E   NP    +   +  +  +FF    + Y  G  +      WD
Sbjct: 274 EALFPKDETDVNPAILSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324


>gi|119774862|ref|YP_927602.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           amazonensis SB2B]
 gi|119767362|gb|ABL99932.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella amazonensis SB2B]
          Length = 391

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 128/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   +   + M   +S +V +    +Y    +      +  W P EV +  D   +    
Sbjct: 23  QTPNDATREPMFFGQSVNVARYDQQRYEVFEKLIEKQLSFFWRPEEVDVSRDKIDF---G 79

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D ER +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 80  KLPDHERHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 139

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-------FTTGTKDADQEF 185
           +II ++  D   +F+       I  +A     Y   L   +         T T D     
Sbjct: 140 HIIRNIVNDPSSVFDDIVVNEEILKRAGDISAYYDELIKLTQIYHLHGEGTHTVDGHVVD 199

Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           +             +     E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 200 VTVRALKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLN 259

Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++         E     QQ++  +   A   E  +A      G  +GLN   
Sbjct: 260 STQHILNIMQGGKDDAEMAEIAIECQQEAYDLFLRAAEQEKEWAKYLFKDGSMIGLNEQI 319

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N+R   + L   +  + NP PWM   +
Sbjct: 320 LCQYVEYITNQRMKSVNLPLPYPESTNPLPWMKNWL 355


>gi|145634465|ref|ZP_01790175.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           influenzae PittAA]
 gi|229845068|ref|ZP_04465204.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 6P18H1]
 gi|229846892|ref|ZP_04466999.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 7P49H1]
 gi|145268445|gb|EDK08439.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           influenzae PittAA]
 gi|229810381|gb|EEP46100.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 7P49H1]
 gi|229812040|gb|EEP47733.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae 6P18H1]
          Length = 376

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 131/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
           +II ++  D   +F+       I  +A     Y   L   S         T T D  +  
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYSEGTYTVDGKECV 184

Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           +             +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +      L      +E +Q++  +   A   E A+A      G  +GLN   
Sbjct: 245 GTQHILNIMAAGQDDLEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNRDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340


>gi|114563305|ref|YP_750818.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           frigidimarina NCIMB 400]
 gi|114334598|gb|ABI71980.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella frigidimarina NCIMB 400]
          Length = 376

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 69/336 (20%), Positives = 129/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   +   + M   +S +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QTPNDSTKEPMFFGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDF---G 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLPEHEQHIFLSNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
           +II ++  +   +F+   +   I  +A     Y   L + +            +      
Sbjct: 125 HIIRNIVNNPSLVFDDIVQNDEILKRAGDIAAYYDDLINLTQINNLLGEGTHIINGKEIT 184

Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 185 VNSRILKKSLYLCMMSVNALEAIRFYVSFACSFAFAERRVMEGNAKIIRLIARDEALHLN 244

Query: 237 FGIDVI--NQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++   Q   ++P +     E +Q++  +  +A   E  +A      G  +GLN   
Sbjct: 245 STQHILALMQGGKDDPEMGEIAAECKQEAYDLFVKAAEQEKEWAKYLFKDGSMIGLNEQI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY++FI N+R   + L   +    NP PWM   +
Sbjct: 305 LCQYVEFITNQRMKSVHLPQPYDEQSNPLPWMKNWL 340


>gi|24373963|ref|NP_718006.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           oneidensis MR-1]
 gi|24348405|gb|AAN55450.1|AE015682_5 ribonucleoside-diphosphate reductase, beta subunit [Shewanella
           oneidensis MR-1]
          Length = 376

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 133/337 (39%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   +   + M   +S +V +    KY    +      +  W P EV +  D   + S  
Sbjct: 8   QTPNDATREPMFFGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDYNS-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 66  -LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+       I  +A    ++   L   +                   
Sbjct: 125 HIIRNIVNDPSVIFDDIVVNHEILRRATDIAEFYDHLIKLTQIYHLLGEGTHVIDGEPVE 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
             T+   +     +     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNTRTLKKALYLCMMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
           N    ++  ++   ++P +     E QQ++  +  +A   E  +A      G  +GLN  
Sbjct: 244 NSTQHILTIMQGGKDDPEMGEIAIECQQEAYNLFLKAAEQEKEWAKYLFKDGSMIGLNEQ 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N+R   + L   +    NP PWM   +
Sbjct: 304 ILCQYVEYITNQRMKSVNLPQPYAEQTNPLPWMKNWL 340


>gi|83754022|pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space
           Group P6(1)22
          Length = 340

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|269957220|ref|YP_003327009.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305901|gb|ACZ31451.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 326

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 131/350 (37%), Gaps = 37/350 (10%)

Query: 13  GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
              ++ + D+    +  + N+L   K    W+       N W+P +VP+ +D+  W +  
Sbjct: 3   PTGKLKLIDR---VSAINWNRLDDEKDLEVWD---RLVGNFWVPEKVPVSNDIQSWAT-- 54

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L++ E+ M  R        +++      +++      P         AF E+VH+ ++ 
Sbjct: 55  -LSEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYS 113

Query: 133 YIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
            I ++L   +   E F      P++  KA   L+Y +                       
Sbjct: 114 SIFSTLISTKEIDEAFAWSEANPNLQRKAEIVLEYYRGDD---------------PLKRK 158

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
           V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +      
Sbjct: 159 VASTMLESFLFYSGFYAPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLALES 218

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
                E +  +  +L E    E+ Y       G +GL     ++++++ AN+    +G E
Sbjct: 219 QERQDEIKAYTFELLFELYENEVEYTEALY--GELGLT-EDVKKFLRYNANKALMNLGYE 275

Query: 311 PLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
            LF   E   NP    +   +  +  +FF    + Y  G  +      WD
Sbjct: 276 ALFPKEETDVNPAILAALSPNADENHDFFSGSGSSYVIGKAVDTTDDDWD 325


>gi|310830452|ref|YP_003965553.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           polymyxa SC2]
 gi|309249919|gb|ADO59485.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
           polymyxa SC2]
          Length = 342

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/341 (21%), Positives = 146/341 (42%), Gaps = 19/341 (5%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           N  ++ +    S +     ++    ++ Y     NHW+P+E+PM  D + +     L  +
Sbjct: 13  NKSNRIIEGESSGILNWDDIRLPQMYKLYRVLIGNHWIPSEIPMNVDKSDF---PMLPTN 69

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
            +   KR +G  A  +S+     V  +  +L++            +E +H+ ++ Y+++S
Sbjct: 70  TQNTFKRIIGLLAVLDSMQT-MFVGDVREYLTDSSLEAVAAIIGQQEVIHNQSYSYVLSS 128

Query: 138 LGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L     + E+F  ++  P +  +  +     Q             + + F + L    V+
Sbjct: 129 LVSYTEQLEIFEYWKNDPILLKRNLFIRDAYQAFRES-------PSPETFFKALVADMVL 181

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++FY  FA   +L R  KM+  ++   YI RDE+ H  F  ++  Q+ I+ P L T+
Sbjct: 182 -EGIFFYAAFAFFYNLARDQKMLATSQMISYIQRDENQHCYFFAELYKQLLIDFPQLNTE 240

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           + +      + EA   E  +A   +  G  G++      Y++ IAN R   +GL   ++ 
Sbjct: 241 QNKTFVYNFMDEAVRHETEWAEYVL-DGIEGIDLDEFRGYIRHIANNRLRLMGLPAAYEG 299

Query: 316 TENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 352
             N  PW    S+        + FE +   Y + ++   WD
Sbjct: 300 VSNTMPWIRPFSDEALNDTLTDQFEAKPRTYTKASQDNDWD 340


>gi|268591162|ref|ZP_06125383.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rettgeri DSM 1131]
 gi|291313388|gb|EFE53841.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rettgeri DSM 1131]
          Length = 378

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 133/336 (39%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +  +V +    KY    +      +  W P EV +  D   +   N
Sbjct: 10  QKKNDQMLEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---N 66

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 67  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 126

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
           +II ++  D   +F+   E   I  +A     +   L   +                   
Sbjct: 127 HIIRNIVNDPAIIFDDIVENEEILKRAKDISGFYDDLIEMTNYYHMFGEGTHTCNGKQVT 186

Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 187 VSLRQLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 246

Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +   ++P +     E +Q+   +  +A   E  +A     +G  +GLN   
Sbjct: 247 GTQHMLNLLRSGQDDPEMAEIAAECEQECYDLFVQAAEQEKEWADYLFSEGSMIGLNKDI 306

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 307 LCQYVEYITNIRMQAVGLKLPFETRSNPIPWINAWL 342


>gi|156933156|ref|YP_001437072.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156531410|gb|ABU76236.1| hypothetical protein ESA_00966 [Cronobacter sakazakii ATCC BAA-894]
          Length = 376

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 128/328 (39%), Gaps = 25/328 (7%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M   +  +V +    KY    +      +  W P EV +  D   ++    L + E+ 
Sbjct: 16  EPMFFGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ---ALPEHEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II ++  
Sbjct: 73  IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVN 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTTGTKDADQE 184
           D   +F+       I  +A     Y   L                 +    T      ++
Sbjct: 133 DPAVVFDDIVTNEQILKRAEGISHYYDDLIEMTSYWHLLGEGTHSVNGKTVTVNLHELKK 192

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L    +     E + FY  FA   +      M G A+  + I RDE+LHL     ++N 
Sbjct: 193 KLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNL 252

Query: 245 IKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
           ++            +E +Q+   +   A   E  +A      G  +GLN     QY+++I
Sbjct: 253 MRSGEDDPEMAAIAEECKQECYDLFVLAAQQEKEWAEYLFQGGSMIGLNKDILCQYVEYI 312

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            N R   +GL+  FK   NP PW++  +
Sbjct: 313 TNIRMQAVGLDLPFKTRSNPIPWINTWL 340


>gi|52425023|ref|YP_088160.1| ribonucleotide-diphosphate reductase subunit beta [Mannheimia
           succiniciproducens MBEL55E]
 gi|52307075|gb|AAU37575.1| NrdF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 376

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/336 (20%), Positives = 129/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V++    KY    +      +  W P EV +  D   +    
Sbjct: 8   QNKNDQLKEPMFFGQNVNVSRYDQQKYETFEKLIEKQLSFFWRPEEVDVAQDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP----------SFTTGTKDAD 182
           +II ++  D   +F+       I  +A     Y   L             ++    K+  
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYNLFGEGTYKVEGKECK 184

Query: 183 QEFL------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +             +E +Q++  +   A   E A+A      G  +GLN   
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKAWADYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340


>gi|167856024|ref|ZP_02478769.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           parasuis 29755]
 gi|219871494|ref|YP_002475869.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           parasuis SH0165]
 gi|167852863|gb|EDS24132.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
           parasuis 29755]
 gi|219691698|gb|ACL32921.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
           parasuis SH0165]
          Length = 325

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 129/320 (40%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
             Q+ P +Y    E   +  +++W+ TE     D+  +++   + D ER ++ R +   +
Sbjct: 9   RIQIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--NINDHERHVLTRAMLAIS 66

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y +   PE        A  E  H   + +++  LGL++  +F    
Sbjct: 67  QVEVNV-KRFWGELYHYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLND--MFTQIT 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+  +  +  +   + +                +F+  L +F +  E +  +  F  ++S
Sbjct: 124 EIEPLMKRIRYMEDFMRE---------KDTGKGQFVLSLVLFSLFVEHISLFGQFIIMMS 174

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   +  E+  L+T EF ++ +T+  +A 
Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGRFGIALYEILSDEHSELFTPEFFEELKTLSQQAF 234

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +  ++  + E Y+    N     +GLEP +           W   
Sbjct: 235 EAERGILDWIFEEGDLSFISRKTVENYIMNRYNNSLSILGLEPPYDVDPELLKETEWFDI 294

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 295 EIISTKETDFFNKRSTDYSK 314


>gi|260598671|ref|YP_003211242.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
           turicensis z3032]
 gi|260217848|emb|CBA32365.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Cronobacter
           turicensis z3032]
          Length = 376

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 131/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNNQLLEPMFFGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y   L                 +    T
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQILKRAEGISHYYDDLIEMTSYWHLLGEGTHSVNGKTVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                 ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++            +E +Q+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLMRSGEDDPEMAIIAEECKQECYDLFVLAAQQEKEWAEYLFQGGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  FK   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLDLPFKTRSNPIPWINTWL 340


>gi|242238482|ref|YP_002986663.1| ribonucleotide-diphosphate reductase subunit beta [Dickeya dadantii
           Ech703]
 gi|242130539|gb|ACS84841.1| ribonucleotide reductase [Dickeya dadantii Ech703]
          Length = 376

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/336 (20%), Positives = 131/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLQEPMFFGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS------------FTTGTKD 180
           +II ++  D   +F+       I  +A     +   L   +                T D
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEEILKRARDISGFYDELIELTSYYHLLGEGTHQVNGKTVD 184

Query: 181 ADQEFLQD----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            +   L+       +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 INVYQLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++            +E QQ+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLMRSGQDDPEMAKVAEECQQQCYDLFVMAAQQEKEWAEYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFETRTNPIPWINAWL 340


>gi|294140834|ref|YP_003556812.1| ribonucleoside-diphosphate reductase subunit beta [Shewanella
           violacea DSS12]
 gi|293327303|dbj|BAJ02034.1| ribonucleoside-diphosphate reductase, beta subunit [Shewanella
           violacea DSS12]
          Length = 376

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 82/346 (23%), Positives = 134/346 (38%), Gaps = 37/346 (10%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
           NN  L P+  G+  VNV       AR DV      KY    +      +  W P EV + 
Sbjct: 11  NNARLEPMFMGQS-VNV-------ARYDVQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            D   +     L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F
Sbjct: 58  KDKIDY---AALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-------------- 168
            E +HS ++ +II ++  D   +F+   E   I  +A    QY                 
Sbjct: 115 SETIHSRSYTHIIRNIVNDPSIIFDDIVENEEILKRATDIAQYYDDLILLTQAFHLHGEG 174

Query: 169 --LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
             + +      T+   ++ L    V   V E + FY  FA   +    N M G A+  + 
Sbjct: 175 THIINGKELLVTQRTIKKSLYLCMVSVNVLEAIRFYVSFACSFAFAERNVMEGNAKIIRL 234

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS----RTMLHEATLLEIAYAHETMPK 282
           I RDE+LHLN    ++  ++         E  ++       +  +A   E  +A      
Sbjct: 235 IARDEALHLNSTQHILKIMRAGADDPEMGEIAKECEQLAYDIFVKAAEQEKEWAQYLFKD 294

Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           G  +GLN     QY+++I N R   + L   +    NP PWM   +
Sbjct: 295 GSMIGLNQAILCQYVEYITNERMKSVNLPCHYDEITNPLPWMKNWL 340


>gi|262274472|ref|ZP_06052283.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
           [Grimontia hollisae CIP 101886]
 gi|262221035|gb|EEY72349.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
           [Grimontia hollisae CIP 101886]
          Length = 360

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 124/316 (39%), Gaps = 25/316 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV + +D   +   N L + E+ +   NL +    +S+  
Sbjct: 16  KYEIFEKLIEKQLSFFWRPEEVDVSNDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQG 72

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  +   +F+       I  
Sbjct: 73  RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVTNPSLVFDDIVVNEHIIK 132

Query: 158 KANWALQYTQTL---SSPSFTTGTKDADQEFL-------------QDLFVFYVVFEGMWF 201
           +AN    Y   L   +S     G  +                       +     E + F
Sbjct: 133 RANDIAGYYDDLIQATSDYHRLGEGEHTVNGQTVVVSLRELKKKLYICLMSVNALEAIRF 192

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++  +         KE 
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNILRSGDDDPEMAEIAKEC 252

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KY 315
           +Q    +   A   E  +A      G  +GLN     QY+++I N R   +GL+P +   
Sbjct: 253 EQVCFDLFKNAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNLRMAAVGLKPAYQGA 312

Query: 316 TENPFPWMSEVIDLKK 331
            +NP PW++  +    
Sbjct: 313 NQNPIPWINAWLSSDN 328


>gi|227328222|ref|ZP_03832246.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 376

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 133/336 (39%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y  +L                 +    T
Sbjct: 125 HIIRNIVNDPSLVFDDIVTNDEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKTVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                 ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++  +         +E QQ+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWL 340


>gi|91793308|ref|YP_562959.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           denitrificans OS217]
 gi|91715310|gb|ABE55236.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella denitrificans OS217]
          Length = 376

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 130/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   +   + M   +S +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QTPNDATKEPMFFGQSVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDKIDF---T 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
           +II ++  D   +F+       I  +A    +Y   L   +       A    +      
Sbjct: 125 HIIRNIVNDPSVIFDDIVVNDEILKRAGDIAKYYDDLIHLTQIFNLHGAGTHLIEGKQVT 184

Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 185 VNLRVLKKSLYLCMMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLN 244

Query: 237 FGIDVI--NQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++   Q   ++P +     E QQ++  + ++A   E  +A      G  +GLN   
Sbjct: 245 STQHILALMQGGKDDPEMAEIAIECQQQAYDLFYKAAEQEKEWAKYLFKDGSMIGLNEQI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N+R   + L   +    NP PWM   +
Sbjct: 305 LCQYVEYITNQRMKSVHLPQPYAEISNPLPWMKNWL 340


>gi|227114436|ref|ZP_03828092.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 376

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 133/336 (39%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y  +L                 +    T
Sbjct: 125 HIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKTVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                 ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++  +         +E QQ+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWL 340


>gi|261822457|ref|YP_003260563.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           wasabiae WPP163]
 gi|261606470|gb|ACX88956.1| ribonucleotide reductase [Pectobacterium wasabiae WPP163]
          Length = 376

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 133/336 (39%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y  +L                 +    T
Sbjct: 125 HIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKTVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                 ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++  +         +E QQ+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWL 340


>gi|59711808|ref|YP_204584.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio fischeri
           ES114]
 gi|197336251|ref|YP_002156001.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio fischeri
           MJ11]
 gi|59479909|gb|AAW85696.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
           protein [Vibrio fischeri ES114]
 gi|197317741|gb|ACH67188.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio fischeri
           MJ11]
          Length = 377

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 138/341 (40%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +++ +   + M    S +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QEKNDQLKEPMFLGNSVNVARYDQQKFQIFEKLIEKQLSFFWRPEEVDVSGDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLPEHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------T 176
           +II ++  +   +F+   E   I  +A     Y   L   +                  T
Sbjct: 125 HIIRNIVNNPSVIFDDIVENEEILKRAKDIAHYYDNLIQATNDYHRFGEGTHVLNGQEIT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            +K   ++ L    +     E + FY  FA   +      M G A+  + I RDESLHL 
Sbjct: 185 ISKRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDESLHLT 244

Query: 237 FGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +   ++P       E +Q+   +   A   E  +A+     G  +GLN   
Sbjct: 245 STQHMLNLLRTGQDDPEFVEIAAECEQECFDLFKAAAEQEKQWANYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
             QY+++I N R   +GL   ++  T+NP PW++  +    
Sbjct: 305 LCQYVEYITNLRMKAVGLNSAYEGATQNPIPWINSWLSSDN 345


>gi|28393533|gb|AAO42187.1| putative ribonucleoside-diphosphate reductase small chain
           [Arabidopsis thaliana]
          Length = 243

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 96/206 (46%), Gaps = 23/206 (11%)

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F +  +   +T KA WA+++     S                +  V +   EG++F   
Sbjct: 41  IFFVQSKPFLVTKKAEWAMKWINGSQS--------------FAERIVAFACVEGIFFSGS 86

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F  I  L +   M G+    + I RDE LH +F   + + ++ +         + + + +
Sbjct: 87  FCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLRTKFD-------EDRLKAI 139

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           + +A  +E  +  + +    VG+N     QY++F+A+R    +G   ++  T NPF WM 
Sbjct: 140 VCDAVEIEREFVCDALSCALVGMNRELMSQYIEFVADRLLAALGCGKVYGVT-NPFDWM- 197

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
           E+I L+ + NFFE RV EYQ+ + + 
Sbjct: 198 ELISLQGKTNFFEKRVGEYQKASVMS 223


>gi|269102947|ref|ZP_06155644.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162845|gb|EEZ41341.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 377

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 132/334 (39%), Gaps = 26/334 (7%)

Query: 21  DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            + M   +  +V +    K+    +      +  W P EV +  D   +   N L D E+
Sbjct: 15  KEPMFFGQPVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSGDRIDY---NNLPDHEK 71

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +II ++ 
Sbjct: 72  HIFISNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIV 131

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEFL------ 186
            D   +F+       I  +A    +Y   L S +         T T D     +      
Sbjct: 132 NDPAIVFDDIVSNEYIIKRAGDISRYYDELISATNDYHRLGEGTHTVDGKTITINLRDLK 191

Query: 187 ---QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
                  +     E + FY  FA   +      M G A+  + I RDE+LHL     ++N
Sbjct: 192 KKLYLCIMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILN 251

Query: 244 QIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
            ++  +         KE + +   +   A   E  +A      G  +GLN     QY+++
Sbjct: 252 LLRNGHDDPEMAEIAKESEAECFDIFKRAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEY 311

Query: 299 IANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK 331
           I N R + +GLE  +   T+NP PW++  +    
Sbjct: 312 ITNLRMNAVGLEHAYTGATQNPIPWINSWLSSDN 345


>gi|227547058|ref|ZP_03977107.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227212475|gb|EEI80364.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           longum subsp. infantis ATCC 55813]
          Length = 330

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 130/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +           +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y +                +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y      +  VGL     E+++++  N+  
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGLT-DDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|312967536|ref|ZP_07781751.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 2362-75]
 gi|312287733|gb|EFR15638.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
           coli 2362-75]
          Length = 359

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 128/312 (41%), Gaps = 26/312 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   ++    L + E+ +   NL +    +S+  
Sbjct: 16  KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 72

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   AF E +HS ++ +II ++  D   +F+       I  
Sbjct: 73  RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 132

Query: 158 KANWALQYTQTLSS-----------------PSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +A     Y   L                    + T   ++  ++    L     + E + 
Sbjct: 133 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIR 191

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKE 256
           FY  FA   +      M G A+  + I RDE+LHL     ++N  +   ++P +    +E
Sbjct: 192 FYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEE 251

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            +Q+   +  +A   E  +A      G  +GLN     QY+++I N R   +GL+  F+ 
Sbjct: 252 CKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQT 311

Query: 316 TENPFPWMSEVI 327
             NP PW++  +
Sbjct: 312 RSNPIPWINTWL 323


>gi|261494146|ref|ZP_05990649.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261310312|gb|EEY11512.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 325

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 130/320 (40%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              + P +Y    E   +  +++W+ TE     D+  +++   + D ER ++ R +   +
Sbjct: 9   RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--INDHERHVLTRAMLAIS 66

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +YR+   PE        A  E  H   + +++  LGL+  E+F+   
Sbjct: 67  QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIH 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+  +  +  +   + +                EF+  L +F +  E +  +  F  ++S
Sbjct: 124 EIEPLMNRIRYMESFMKD---------KDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMS 174

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   ++ E+  L+T EF +  +T+ ++A 
Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAF 234

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +  +   + E Y++   N     +GLEP             W   
Sbjct: 235 EAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLEPPHDIDPELLKETEWFDI 294

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 295 EILSTKETDFFNKRSTDYSK 314


>gi|34419511|ref|NP_899524.1| aerobic ribonucleoside diphosphate reductase small subunit [Vibrio
           phage KVP40]
 gi|34333192|gb|AAQ64347.1| aerobic ribonucleoside diphosphate reductase small subunit [Vibrio
           phage KVP40]
          Length = 374

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/342 (17%), Positives = 128/342 (37%), Gaps = 22/342 (6%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
             I    K  ++     L    ++++   +K+G   +      +  W P EV +  D   
Sbjct: 3   KTIFNKNKVDHLGQPLFLGEDPNISRFETVKHGVFEQLTEKQLSFFWRPEEVDLTLDSQE 62

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +   + + +  + +  +NL + +  +S+      +A     S+     ++    F E +H
Sbjct: 63  F---DRMPEHWKHVFTQNLKYQSLLDSVQGRAPNIAFLPICSDNSLENWITTWDFSETIH 119

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           S ++ +I+ +L  +   +F+      SI A+A    ++   L + +              
Sbjct: 120 SRSYTHIMRNLYSNPSAVFDEIVLDKSIMARAEAVTEHYDKLIAETQKLNQLKTMNLDEA 179

Query: 188 D--------------LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                                  E + FY  FA   +      M G A+  + I RDE L
Sbjct: 180 HILMQESAVKEALYLCMHAVNALEAIRFYVSFACTFNFAEQGIMEGNAKVMKLIARDEQL 239

Query: 234 HLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     +I+  +         E     Q ++  +  +    E  +AH    +G   GLN
Sbjct: 240 HLKGTQALISIWQNYKDDPEMAEISLRLQPEAEKIFMQVVDQEKEWAHSLFSQGTVPGLN 299

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           A    +Y++++A+ R   +GL   +   ++P PW+ + ++  
Sbjct: 300 AQILCEYVEYLADSRMRSVGLNSPYPRRKHPLPWIRKWLNSD 341


>gi|253687496|ref|YP_003016686.1| ribonucleotide reductase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754074|gb|ACT12150.1| ribonucleotide reductase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 376

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 134/336 (39%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y  +L                 +    T
Sbjct: 125 HIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMTGYYHLLGEGTHQVNGKSVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
               + ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VDLHSLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++  +         +E QQ+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWL 340


>gi|190150315|ref|YP_001968840.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303253584|ref|ZP_07339722.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245900|ref|ZP_07527985.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247988|ref|ZP_07530018.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307254872|ref|ZP_07536697.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259315|ref|ZP_07541044.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307263658|ref|ZP_07545269.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915446|gb|ACE61698.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302647504|gb|EFL77722.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306853260|gb|EFM85480.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855503|gb|EFM87676.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306862169|gb|EFM94138.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866682|gb|EFM98541.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306871035|gb|EFN02768.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 376

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 132/337 (39%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   ++S  
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A    +S PE   ++    F E +HS ++ 
Sbjct: 66  -LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+       I  +A     Y   L   S                 + 
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQYQ 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L    V+ E + FY  FA   +      M G A+  ++I RDE LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNVL-EAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
               +++N I             +E +Q++  +   A   E  +A      G  +GLN  
Sbjct: 244 TGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNED 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              +Y+++I N R   +GL   F  + NP PW++  +
Sbjct: 304 ILVKYVEYITNIRMQAVGLPRPFAASSNPIPWINAWL 340


>gi|294788520|ref|ZP_06753762.1| ribonucleoside-diphosphate reductase, beta subunit [Simonsiella
           muelleri ATCC 29453]
 gi|294483397|gb|EFG31082.1| ribonucleoside-diphosphate reductase, beta subunit [Simonsiella
           muelleri ATCC 29453]
          Length = 384

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/334 (20%), Positives = 130/334 (38%), Gaps = 28/334 (8%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M   +  +V +    KY    +      +  W P EV +  D   +     L + E+ 
Sbjct: 23  EPMFFGQPVNVARYDQQKYEVFEKLIEKQISFFWRPEEVDLSRDRMDY---AKLPEHEKH 79

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II ++  
Sbjct: 80  IFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWAFFETIHSRSYTHIIRNIVN 139

Query: 141 DEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFTTGTKDADQ 183
           D   +F+   +   I A+A     Y                    +++   T   ++  +
Sbjct: 140 DPSVVFDDIVQNEYIIARAEDIACYYNDLIEYTQYFNLLGEGKHLINNKEITISLRELKK 199

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           +    L    V+ E + FY  FA   +      M G A+  + I RDE+LHL     ++N
Sbjct: 200 KLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLN 258

Query: 244 QIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
            ++             E   +   +  +A   E  +A      G  +GLN     QY+++
Sbjct: 259 LMRNGTDDPEMAEIAAELHDECVALFKKAAAQEKEWAAYLFKDGSMIGLNKDILGQYVEY 318

Query: 299 IANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
           I N R   +GL   F    +NP PW++  +    
Sbjct: 319 ITNLRMSAVGLPQAFPKALQNPIPWINAWLSSDN 352


>gi|254672337|emb|CBA05511.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
           meningitidis alpha275]
          Length = 345

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 133/336 (39%), Gaps = 28/336 (8%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 14  PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 71  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 130

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   E   ITA+A     Y   L   +                  
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPI 190

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T   +   ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 191 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++             E Q +   +  +A   E  +A      G  +GLN 
Sbjct: 250 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 309

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMS 324
               QY+++I N R   +GL   F+   +NP PW++
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345


>gi|251790602|ref|YP_003005323.1| ribonucleotide-diphosphate reductase subunit beta [Dickeya zeae
           Ech1591]
 gi|247539223|gb|ACT07844.1| ribonucleotide reductase [Dickeya zeae Ech1591]
          Length = 376

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 131/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLLEPMFFGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GL + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  GLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     +   L                 +    T
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEEILKRAKDISGFYDELIELTSYYHLLGEGTHQVNGKTVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                 ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 INLYELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++            +E QQ+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLMRAGQDDPEMAQVAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFETRTNPIPWINAWL 340


>gi|126208467|ref|YP_001053692.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae L20]
 gi|165976419|ref|YP_001652012.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303251074|ref|ZP_07337260.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307250239|ref|ZP_07532194.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307252630|ref|ZP_07534523.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307261475|ref|ZP_07543145.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|126097259|gb|ABN74087.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165876520|gb|ABY69568.1| ribonucleoside-diphosphate reductase, beta chain [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302650084|gb|EFL80254.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306857725|gb|EFM89826.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859875|gb|EFM91895.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306868827|gb|EFN00634.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 376

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 132/337 (39%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   ++S  
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A    +S PE   ++    F E +HS ++ 
Sbjct: 66  -LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+       I  +A     Y   L   S                 + 
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQYQ 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L    V+ E + FY  FA   +      M G A+  ++I RDE LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNVL-EAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
               +++N I             +E +Q++  +   A   E  +A      G  +GLN  
Sbjct: 244 TGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNED 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              +Y+++I N R   +GL   F  + NP PW++  +
Sbjct: 304 ILVKYVEYITNIRMQAVGLPRPFAASSNPIPWINAWL 340


>gi|296393703|ref|YP_003658587.1| ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM
           44985]
 gi|296180850|gb|ADG97756.1| Ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM
           44985]
          Length = 334

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 128/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   L +DE+ +  R     
Sbjct: 25  NWNRVADEKDAEVWD---RLVGNFWLPEKVPLSNDIQSWHT---LNEDEQRLTMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++  +   +++      P         AF E+VH+ ++  I ++L       E F 
Sbjct: 79  TLLDTIQGSVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLTGTPEIDEAFR 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   L+  +                       V   + E   FY+GF  
Sbjct: 139 WSEENPALQKKAAIVLERYRGDD---------------PLKRKVASTLLESFLFYSGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +    +     +E +  + ++L +
Sbjct: 184 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLQMSTPERREELKDFTFSLLFD 243

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 244 LYENEVEYTQDLY--DPVGLT-EDVKKFLRYNANKALMNLGYEGLFPKDETAVNPAILSA 300

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 333


>gi|271499642|ref|YP_003332667.1| ribonucleotide reductase [Dickeya dadantii Ech586]
 gi|270343197|gb|ACZ75962.1| ribonucleotide reductase [Dickeya dadantii Ech586]
          Length = 376

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 129/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLLEPMFFGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFV 191
           +II ++  D   +F+       I  +A     +   L   + +     +   +       
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEILKRAKDISGFYDELIELTSYYHLLGEGTHQINSKTVT 184

Query: 192 FYVV---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
             +                 E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLYELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++         +  ++ +   ++    A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLMRAGQDDPEMAQIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFETRTNPIPWINAWL 340


>gi|152979144|ref|YP_001344773.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
           succinogenes 130Z]
 gi|150840867|gb|ABR74838.1| Ribonucleoside-diphosphate reductase [Actinobacillus succinogenes
           130Z]
          Length = 376

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QNKNDQLLEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG--------------- 177
           +II ++  D   +F+       I  +A     Y   L   S                   
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYSLYGEGTYQVDGKECA 184

Query: 178 -TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            T    ++ L    +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VTLRNLKKRLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +             +E +Q++  +   A   E A+A      G  +GLN   
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFEARSNPIPWINAWL 340


>gi|237732274|ref|ZP_04562755.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
           30_2]
 gi|226907813|gb|EEH93731.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
           30_2]
          Length = 376

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 135/329 (41%), Gaps = 27/329 (8%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M   +  +V +    KY    +      +  W P EV +  D   ++    L + E+ 
Sbjct: 16  EPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ---ALPEHEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II ++  
Sbjct: 73  IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVN 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFTTGTKDADQ 183
           D   +F+       I  +A     Y   L                    +     ++  +
Sbjct: 133 DPAVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVVVNLRELKK 192

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           +    L     + E + FY  FA   +      M G A+  + I RDE+LHL     ++N
Sbjct: 193 KLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 251

Query: 244 --QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
             +  +++P +    +E +Q+   +  +A L E  +A      G  +GLN     QY+++
Sbjct: 252 LLRSGVDDPEMAEIAEECKQECYDLFVQAALQEKEWADYLFRDGSMIGLNKDILCQYVEY 311

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           I N R   +GL+  F+   NP PW++  +
Sbjct: 312 ITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|260768282|ref|ZP_05877216.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           furnissii CIP 102972]
 gi|260616312|gb|EEX41497.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           furnissii CIP 102972]
 gi|315179989|gb|ADT86903.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio furnissii
           NCTC 11218]
          Length = 377

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 133/341 (39%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ N   + M   +  +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QKKNNQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------T 176
           +II ++  D   +F+   E   I  +A     +   L   +                   
Sbjct: 125 HIIRNIVNDPAIVFDDIVENEHIIKRAKDIAHFYDDLIQMTNDYHRFGEGTHELNGETVH 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            +    ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VSLKGLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++            +E +Q+   +  +A   E  +A      G  +GLN   
Sbjct: 245 GTQHMINLLRNGMDDFEFLQIAEECKQECFDLFKQAAEQEKEWAEYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
             QY+++I N R   +GL+  +   T NP PW++  +    
Sbjct: 305 LCQYVEYITNIRMQAVGLDAAYPSATTNPIPWINAWLSSDN 345


>gi|90409249|ref|ZP_01217354.1| ribonucleotide-diphosphate reductase beta subunit [Psychromonas sp.
           CNPT3]
 gi|90309647|gb|EAS37827.1| ribonucleotide-diphosphate reductase beta subunit [Psychromonas sp.
           CNPT3]
          Length = 381

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/341 (20%), Positives = 124/341 (36%), Gaps = 30/341 (8%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   + M      +V +    K+    +      +  W P E+ +  D   +     L  
Sbjct: 12  DALKEPMFFGNPVNVARYDQQKFEVFEKLIEKQLSFFWRPEEIDVSRDRIDF---MNLPS 68

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +I+ 
Sbjct: 69  HEQHIFISNLKYQTLLDSIQGRSPNMALLPIVSLPELETWIETWSFSETIHSRSYTHILR 128

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLS---------------------SPSFT 175
           +L  D  E+F        I  +A+   QY   L                        +  
Sbjct: 129 NLFTDPSEVFEDIVTNVEIQKRASDIAQYYDALIHAVQFMQLHGLEQSKIEYLDLDGNPE 188

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
             T    ++ L          E + FY  FA   +    + + G A+  + I RDE+LHL
Sbjct: 189 KLTLRVIKKKLYLCMCSINALEAIRFYVSFACSFAFAERDLLEGNAKIIKLIARDEALHL 248

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAHETMPKG-FVGLNAP 290
           N    ++N            E   +       +   A   E  +A      G  +GLN  
Sbjct: 249 NSTQQILNIWADGKDDPEMAEIAIECHAKGRDIFLTAAAQEKEWAAYLFKDGSMIGLNEV 308

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
              QY+++I+N R   IG E  F+   NP PW++  +    
Sbjct: 309 ILCQYVEYISNVRMQAIGYEAPFEIKNNPIPWINHWLISDN 349


>gi|283832326|ref|ZP_06352067.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
           youngae ATCC 29220]
 gi|291071973|gb|EFE10082.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
           youngae ATCC 29220]
          Length = 376

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 135/329 (41%), Gaps = 27/329 (8%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M   +  +V +    KY    +      +  W P EV +  D   ++    L + E+ 
Sbjct: 16  EPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II ++  
Sbjct: 73  IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVN 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFTTGTKDADQ 183
           D   +F+       I  +A     Y   L                    +     ++  +
Sbjct: 133 DPAVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVVVNLRELKK 192

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           +    L     + E + FY  FA   +      M G A+  + I RDE+LHL     ++N
Sbjct: 193 KLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 251

Query: 244 --QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
             +  +++P +    +E +Q+   +  +A L E  +A      G  +GLN     QY+++
Sbjct: 252 LLRSGVDDPEMAEIAEECKQECYDLFVQAALQEKEWADYLFRDGSMIGLNKDILCQYVEY 311

Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           I N R   +GL+  F+   NP PW++  +
Sbjct: 312 ITNIRMQAVGLDLPFQTRSNPIPWINTWL 340


>gi|27904669|ref|NP_777795.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|38605263|sp|Q89AS5|RIR2_BUCBP RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|27904066|gb|AAO26900.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 376

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/354 (21%), Positives = 138/354 (38%), Gaps = 28/354 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +S ++++    KY    +      +  W P EV +  D   ++   
Sbjct: 8   KNKNNQLYEPMFFGQSVNISRYDQQKYEIFEKLIEKQLSFFWRPEEVDLSRDYIDFQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L   E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLPQHEKHIFVSNLKYQTLLDSIQGRSPNIALLPIVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++      +F+   +  +I  +A    +Y   L   +                   
Sbjct: 125 HIIRNIINTPSLIFDDIIDNKNIANRAKDIAKYYDDLIELTSYWHLFGEGKHTINGKKIK 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
               +  ++    L     + E + FY  FA   +     KM G A+  + I RDE+LHL
Sbjct: 185 IDLHELKKKLYLCLISVNAL-EAIRFYVSFACSFAFAEREKMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDV----INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                +     N    E     +KE  ++   +    +  E  +A      G  +GLN  
Sbjct: 244 TSTQHILNILHNDKNNEGMSDISKECYEECYHLFIRVSDQEKIWAKYLFQNGSMLGLNQE 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM-SEVIDLKKEKNFFETRVTEY 343
              QY+++I N R   IGL   FK   NP PW+ S +I    +    E  V+ Y
Sbjct: 304 ILSQYIEYITNIRMKAIGLPSPFKILSNPIPWINSWLISDNVQVAPQEISVSSY 357


>gi|221316490|ref|ZP_03598295.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
          Length = 347

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 130/336 (38%), Gaps = 15/336 (4%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +RM +  S +     +     +E         W+P EV M  D   W +   + + E+ +
Sbjct: 20  ERMFDDVSGILFWDDIINQVYYELIKEMREVFWIPDEVSMSKDKVQWAT--EMNEMEQEL 77

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
               +G  A  +S+      +A Y ++ +   +  +   A  E +H+ ++ YI++S+   
Sbjct: 78  FLNAIGILAVLDSIATYFDNVAAY-YIRDSAIKALMAFVAAMETIHNESYTYILSSVSSK 136

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
                 +  +V     K  + ++    L    F    ++   E      V     EG+ F
Sbjct: 137 -----AVSLDVFERPKKNEFMIR-RNKLMMDLFDEFIQNPTPETFAKGLVAMSGLEGLCF 190

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
             GF       R  KM G     QYI RDE  H  F   ++  I  + P L T+EF +  
Sbjct: 191 VNGFTPFYHFNRNGKMFGTGTVIQYIQRDEMKHSYFQTILVRDILTQYPELNTEEFSEFV 250

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
                E   LE  +  +   K    ++    ++Y+ + AN     +GL+ +F   +NP P
Sbjct: 251 YDFFTELVQLEREFCEDLY-KNTPDIDIEEVKEYIGYRANLILDNLGLDQIFSAKKNPMP 309

Query: 322 W---MSEVIDLKKEKNFFETRVTEYQQGAEL--KWD 352
           W            +++FFE +   Y +  E    WD
Sbjct: 310 WITAFDPDNLNNTKRDFFEDKEVNYGKANEQKNDWD 345


>gi|117530173|ref|YP_851016.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis
           phage Ma-LMM01]
 gi|86990305|dbj|BAE79256.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis
           phage Ma-LMM01]
 gi|117165785|dbj|BAF36093.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis
           phage Ma-LMM01]
 gi|124270949|dbj|BAF45776.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage
           Ma-LMM02]
 gi|124270951|dbj|BAF45777.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage
           Ma-LMM03]
 gi|124270953|dbj|BAF45778.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage
           Ma-HPM05]
          Length = 348

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/359 (21%), Positives = 143/359 (39%), Gaps = 30/359 (8%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           L PI       +   +R+      ++  L  +KY WA   +     N W+P    +  D+
Sbjct: 5   LPPIFNPSGDDSPQKRRLFGGNPTNIINLKDVKYKWASHLFTEMRANIWIPQATDLTPDI 64

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
             + +   +  + R      L +    +SL    + L +   ++ PE    +  Q  +E 
Sbjct: 65  NNYVT---MPPNMRRAFDGMLSYLTFLDSLQTRVLPL-LMPVITAPEVSICMGEQLSQEQ 120

Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           VHS ++ YII ++   +    ++ ++RE P +  +  +                  +   
Sbjct: 121 VHSQSYAYIIETVIPTDKRDYIYELWREDPVLLKRCEYIQNLYDRYIH--------EMTM 172

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E      V   + EG++F+ GF    ++     M   A+  + I RDE  HL    ++I 
Sbjct: 173 ENYTISMVSDFLLEGIYFFPGFRLFYAIANERYMSATADIIKLIERDEQTHLKLISNIIR 232

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
               E   +W      +   +  +A   EI +    +  G  G+NA + EQY +++ N R
Sbjct: 233 TGLAEGTLMWDT---DEIIDLFRKAAEYEIEWGLH-IGLGVNGINATTIEQYAKYLCNIR 288

Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKKE-----KNFFETRVTEYQQGAEL--KWD 352
              IGL  +F+   Y+ NP+  +        E      NFFE+ V  Y+  A++   WD
Sbjct: 289 ARAIGLPTVFEGRQYSRNPYAHLERFAATTGEDSITRDNFFESGVI-YRNPAKVVDGWD 346


>gi|90581239|ref|ZP_01237037.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum
           S14]
 gi|90437610|gb|EAS62803.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum
           S14]
          Length = 377

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/342 (21%), Positives = 138/342 (40%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + R +   + M   +S +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QTRNDQLKEPMFFGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSGDRINY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  +   +F+   E   I  +A    +Y   L S +                 FT
Sbjct: 125 HIIRNIVNNPSVVFDDIVENEHIIKRAGDISKYYDALISATNDYHRYGEGSHSANGVPFT 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
               +  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLHELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++  +          E +Q+   +   A   E  +A      G  +GLN  
Sbjct: 244 TGTQHILNLLRNGHDDPEMAEIAAECEQECFDIFKAAAEQEKEWADYLFKDGSMIGLNKQ 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
              QY+++I N R   +GL P +   T+NP PW++  +    
Sbjct: 304 ILCQYVEYITNLRMVAVGLRPAYDGATQNPIPWINSWLSSDN 345


>gi|71892252|ref|YP_277986.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|71796358|gb|AAZ41109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 376

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 134/341 (39%), Gaps = 27/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +  ++ +    K+    +      +  W P E+ +  D   ++S  
Sbjct: 8   QNKNNQLLEPMFLGQPVNIARFDQQKHSIFEKLIEKQLSFFWRPEEIDISKDRIDFQS-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 66  -LPDHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPELEIWVETWSFFETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
           +II ++      +F+       I  +A     Y                    +++ +  
Sbjct: 125 HIIRNIVNHPSLIFDDIISNKEILKRAKDISTYYDNLIELTSYYHILGPGIHQINNNTVA 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
               +  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLHELKKKLYLCLISVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
           N    ++N ++  +          E QQ+S  +   A   E  +A+     G  +GLN  
Sbjct: 244 NATQHILNLMRSGSDDPEMADISTECQQESYALFLMAAEQEKNWANYLFKDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
              QY+++I N R   IGL   F    N  PW++  +    
Sbjct: 304 ILCQYIEYITNIRMQAIGLRTPFNIKSNVIPWINSWLSSDN 344


>gi|238897538|ref|YP_002923217.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465295|gb|ACQ67069.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 376

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 132/336 (39%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ N   + M   ++ +V +    KY    E      +  W P E+ +  D   ++S  
Sbjct: 8   QKKNNQLLEPMFLGQTVNVARYDQQKYPIFEELIEKQLSFFWRPEEIDVSRDRIDYQS-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 66  -LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
           +II ++  D   +F+       I  +A     Y   L   +      D     +      
Sbjct: 125 HIIRNIVNDPSCIFDDIVTNNEILKRAKDISAYYDDLIKMTSYYHLLDEGTHQVNGKTTV 184

Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLYALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHLM 244

Query: 237 FGIDVI--NQIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++   +   ++P +    +E QQ+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLDLMRSGKDDPEMADIAQECQQECSDLFLLAAQQEKEWAAYLFRDGSMIGLNQDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY++++ N R   + L+  F    NP PW++  +
Sbjct: 305 LCQYIEYMTNIRMQAVKLDAPFSIRTNPIPWINSWL 340


>gi|317506846|ref|ZP_07964618.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974]
 gi|316254774|gb|EFV14072.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974]
          Length = 332

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 138/356 (38%), Gaps = 35/356 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           + P++    +   D  +++ A  + N+++  K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MHPLETESSQKAPDKVKLVRA-INWNRVVDEKDSEVWD---RLVGNFWLPEKVPLSNDIQ 56

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W +   L + E+ +  R        +++      +++      P         AF E+V
Sbjct: 57  SWHT---LNEHEQQLTMRVFTGLTLLDTIQGAVGAVSLIPDALTPHEEAVYTNIAFMESV 113

Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L       E F    E P++  KA   L+  +                 
Sbjct: 114 HAKSYSSIFSTLSNTPEIDEAFRWSEENPNLQRKAAIVLERYRGDD-------------- 159

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 160 -PLKRKVASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQR 218

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
               +     +E +  + ++L +    E+ Y  +      VGL     ++++++ AN+  
Sbjct: 219 GLAASTEQRREELKDFTFSLLFDLYENEVEYTQDLY--DPVGLT-EDVKKFLRYNANKAL 275

Query: 305 HQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
           + +G E LF   E   NP    +   +  +  +FF    + Y  G  +      WD
Sbjct: 276 NNLGYEGLFPKDETSVNPAILSALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 331


>gi|209695249|ref|YP_002263178.1| ribonucleotide-diphosphate reductase subunit beta [Aliivibrio
           salmonicida LFI1238]
 gi|208009201|emb|CAQ79455.1| ribonucleoside-diphosphate reductase 1 beta chain [Aliivibrio
           salmonicida LFI1238]
          Length = 377

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 136/341 (39%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +++ +   + M    S +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QEKNDQLKEPMFLGNSVNVARYDQQKFQVFEKLIEKQLSFFWRPEEVDVSGDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLPEHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
           +I+ ++  D   +F+   E   I  +A     Y   L   +         T T + ++  
Sbjct: 125 HIVRNIVNDPAIIFDDIVENEEILKRAKDIAHYYDNLIQATNDYHRFGEGTHTVNGEEII 184

Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           +             +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VSKRELKKTLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +   ++P       E +Q    +   A   E  +A+     G  +GLN   
Sbjct: 245 STQHMVNLLRTGQDDPEFVEIAAECEQDCFDLFKAAAEQEKEWANYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
             QY+++I N R   +GL   +   T+NP PW++  +    
Sbjct: 305 LCQYVEYITNLRMKAVGLSGAYDGATQNPIPWINSWLSSDN 345


>gi|154283275|ref|XP_001542433.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1]
 gi|150410613|gb|EDN06001.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1]
          Length = 255

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 18/189 (9%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L    +   L PLKY   W+ Y  A  + W   E+ +  DL  W   N L DDER 
Sbjct: 78  DEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 135

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+V      +  PE R +   Q   E +HS T+  +I +   
Sbjct: 136 FISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIK 195

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +  +   LF+    +P I  KA+WA+++ +            D D  F Q L  F  V E
Sbjct: 196 EPKQRTYLFDAIETIPCIRKKADWAIRWIE------------DKDSTFAQRLVAFAAV-E 242

Query: 198 GMWFYTGFA 206
           G++F   FA
Sbjct: 243 GIFFSGSFA 251


>gi|322514736|ref|ZP_08067762.1| ribonucleotide-diphosphate reductase beta subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322119331|gb|EFX91447.1| ribonucleotide-diphosphate reductase beta subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 376

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 132/337 (39%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   ++S  
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A    +S PE   ++    F E +HS ++ 
Sbjct: 66  -LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+       I  +A     Y   L   S                 + 
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQYQ 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L    V+ E + FY  FA   +      M G A+  ++I RDE LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNVL-EAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
               +++N +             +E +Q++  +   A   E  +A      G  +GLN  
Sbjct: 244 TGTQNMLNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNED 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              +Y+++I N R   +GL   F  + NP PW++  +
Sbjct: 304 ILVKYVEYITNIRMQAVGLPRPFATSSNPIPWINAWL 340


>gi|54309624|ref|YP_130644.1| ribonucleotide-diphosphate reductase subunit beta [Photobacterium
           profundum SS9]
 gi|46914062|emb|CAG20842.1| putative ribonucleoside-diphosphate reductase,beta subunit
           [Photobacterium profundum SS9]
          Length = 377

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 136/335 (40%), Gaps = 28/335 (8%)

Query: 21  DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            + M   +S +V +    K+    +      +  W P EV +  D   +   N L D E+
Sbjct: 15  KEPMFFGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSGDRIDY---NNLPDHEK 71

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +II ++ 
Sbjct: 72  HIFISNLKYQTLLDSIQGRSPNVALLPIVSIPELETWIETWSFSETIHSRSYTHIIRNIV 131

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTL-----------------SSPSFTTGTKDAD 182
            D   +F+   E   I  +A    +Y   L                 +  + T   ++  
Sbjct: 132 NDPAIVFDDIVENEYIIKRAGDISKYYDDLIAATSDYHRLGEGKHTVNGETITVNLREIK 191

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           ++    +     + E + FY  FA   +      M G A+  + I RDE+LHL     ++
Sbjct: 192 KKLYVCMMSVNAL-EAIRFYVSFACSFAFAEREVMEGNAKIIKLIARDEALHLTGTQHIL 250

Query: 243 NQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQ 297
           N ++  +         +E QQ+   +  EA   E  +A      G  +GLN     QY++
Sbjct: 251 NLLRGRHDDPEMADIAQECQQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKEILCQYVE 310

Query: 298 FIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
           +I N R   +GLE  +    +NP PW++  +    
Sbjct: 311 YITNLRMKAVGLEQAYPGANQNPIPWINSWLSSDN 345


>gi|257464834|ref|ZP_05629205.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           minor 202]
 gi|257450494|gb|EEV24537.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           minor 202]
          Length = 326

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 132/320 (41%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              + P +Y    E   +  +++W+ TE     D+  +++   +TD ER ++ R +   +
Sbjct: 10  RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--ITDHERHVLTRAMLAIS 67

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +YR+   PE        A  E  H   + +++  LGL+  E+F+  +
Sbjct: 68  QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 124

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           ++  +  +  +   + +                EF+  L +F +  E +  +  F  ++S
Sbjct: 125 DIEPLMNRIRYMESFMKD---------KDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 175

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   ++ E+  L+T  F ++ +T+ ++A 
Sbjct: 176 FNKYKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPAFFEELQTLANQAF 235

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +  ++  +   Y++   N     +GLEP             W   
Sbjct: 236 EAEKGILDWIFEEGDLSFISKETVLNYIKSRYNNSLVTLGLEPPHNINPELLKETAWFDI 295

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 296 EILSTKETDFFNKRSTDYSK 315


>gi|217973230|ref|YP_002357981.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           baltica OS223]
 gi|304408853|ref|ZP_07390474.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS183]
 gi|307302856|ref|ZP_07582611.1| Ribonucleoside-diphosphate reductase [Shewanella baltica BA175]
 gi|217498365|gb|ACK46558.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS223]
 gi|304352674|gb|EFM17071.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS183]
 gi|306913216|gb|EFN43638.1| Ribonucleoside-diphosphate reductase [Shewanella baltica BA175]
 gi|315267707|gb|ADT94560.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS678]
          Length = 376

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 131/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   +   + M   +S +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QTPNDATREPMFLGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---G 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
           +II ++  D   +F+       I ++A     Y   L   +         T   D  +  
Sbjct: 125 HIIRNIVNDPSVIFDDIVVNKEILSRATDIAAYYDHLIQLTQVFHLLGAGTHVIDGKEVI 184

Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           +             +     E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 185 VNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLN 244

Query: 237 FGIDV--INQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +  I Q   ++P +     E QQ++  +  +A   E  +A      G  +GLN   
Sbjct: 245 STQHILSIMQGGKDDPEMGEIAAECQQEAFDLFFKAAEQEKEWAKYLFKDGSMIGLNEQI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY++FI N+R   + L   +    NP PWM   +
Sbjct: 305 LCQYVEFITNQRMKSVNLPQPYPEITNPLPWMKNWL 340


>gi|53728876|ref|ZP_00348266.1| COG0208: Ribonucleotide reductase, beta subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207635|ref|YP_001052860.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           pleuropneumoniae L20]
 gi|165975603|ref|YP_001651196.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190149418|ref|YP_001967943.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249851|ref|ZP_07336055.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303251971|ref|ZP_07338142.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247133|ref|ZP_07529185.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307249355|ref|ZP_07531349.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307251676|ref|ZP_07533581.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307253912|ref|ZP_07535764.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307256172|ref|ZP_07537959.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|307258366|ref|ZP_07540107.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|307260605|ref|ZP_07542297.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|307262736|ref|ZP_07544363.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126096427|gb|ABN73255.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875704|gb|ABY68752.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189914549|gb|ACE60801.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302649401|gb|EFL79586.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302651418|gb|EFL81570.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306856382|gb|EFM88533.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306858649|gb|EFM90711.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306860873|gb|EFM92881.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306863116|gb|EFM95058.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306865353|gb|EFM97249.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306867550|gb|EFM99397.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306869682|gb|EFN01467.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306871881|gb|EFN03598.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 325

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/320 (20%), Positives = 130/320 (40%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              + P +Y    E   +  +++W+ TE     D+  ++    + D ER ++ R +   +
Sbjct: 9   RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYR--IDINDHERHVLTRAMLAIS 66

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +YR+   PE        A  E  H   + +++  LGL+  E+F+  +
Sbjct: 67  QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           ++  +  +  +   + +                EF+  L +F +  E +  +  F  ++S
Sbjct: 124 DIEPLMNRIRYMESFMKD---------KDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 174

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   ++ E+  L+T EF +  +T+  +A 
Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILREEHSELFTPEFFEDLKTLSSQAF 234

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +  ++    E Y++   N     +GLEP +           W   
Sbjct: 235 EAECGILDWIFEEGDLSFISREEVENYIRSRYNNSLMTLGLEPPYDVNPELLKETEWFDI 294

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 295 EILSTKETDFFNKRSTDYSK 314


>gi|307257037|ref|ZP_07538813.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864521|gb|EFM96428.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 376

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 131/337 (38%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   ++S  
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A    +S PE   ++    F E +HS ++ 
Sbjct: 66  -LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+       I  +A     Y   L   S                 + 
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQYQ 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L    V+ E + FY  FA   +      M G A+  ++I RDE LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNVL-EAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
               +++N I             +E +Q++  +   A   E  +A      G  +GLN  
Sbjct: 244 TGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNED 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              +Y+++I N R   +GL   F    NP PW++  +
Sbjct: 304 ILVKYVEYITNIRMQAVGLPRPFATASNPIPWINAWL 340


>gi|319944853|ref|ZP_08019115.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia
           mirabilis ATCC 51599]
 gi|319741423|gb|EFV93848.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia
           mirabilis ATCC 51599]
          Length = 333

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/362 (20%), Positives = 132/362 (36%), Gaps = 40/362 (11%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           MA    +  +   EK   V    +     + N+L   K    W        N W+P +VP
Sbjct: 1   MARQEQVIDMSNKEKARKV---PL---AINWNRLQDEKDLEVWN---RLTANFWLPEKVP 51

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +D+  W +   L ++E+ +  R        +++       ++      P     L   
Sbjct: 52  LSNDVQSWAT---LREEEQTLTIRVFTGLTLLDTIQNTVGAPSMMPDAQTPHEEAVLTNI 108

Query: 121 AFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
           AF EAVH+ ++  I ++L       E F    E P + AKA   L+     S P      
Sbjct: 109 AFMEAVHARSYSSIFSTLCSTREVDEAFRWSEENPQLQAKARLILEEYDAASDP------ 162

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                       +  V  E   FY+GF   +      K+   A+  + I+RDE++H  + 
Sbjct: 163 --------LQRKIASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYI 214

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
                +     P       +  + ++L E   +E  Y  E   +  +GL     + ++ +
Sbjct: 215 GYKFQRALARLPEADQARLKDFAFSLLFELYEVEALYTEELYDR--IGLT-EDVKAFLHY 271

Query: 299 IANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----K 350
            AN+    +G E LF       NP   +S +    +  +FF    + Y  G  +      
Sbjct: 272 NANKALQNLGYEALFPPAACEVNP-AILSALSPDSENHDFFSGSGSSYVIGKAVATEDED 330

Query: 351 WD 352
           WD
Sbjct: 331 WD 332


>gi|33519930|ref|NP_878762.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Blochmannia floridanus]
 gi|33504276|emb|CAD83168.1| ribonucleoside-diphosphate reductase 1 beta chain [Candidatus
           Blochmannia floridanus]
          Length = 376

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 137/341 (40%), Gaps = 27/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +  ++ +    K+    +      +  W P E+ +  D   ++S  
Sbjct: 8   QNKNNQLLEPMFFGQPVNIARFDQQKHIIFEKLIEKQLSFFWRPEEIDISKDRIDYQS-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 66  -LPNHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPELETWVETWSFFETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-----------------SSPSFT 175
           +II ++      +F+       I  +A     Y   L                 ++ + T
Sbjct: 125 HIIRNIVNHPSVIFDDIVTNKEILKRAKDISMYYDDLIKLTNYYYTLGIGKHRVNNTTIT 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
               +  ++    L    V+ E + FY  FA   +      M G A+  ++I RDESLHL
Sbjct: 185 VNLHELKKKLYLCLISVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIRFIARDESLHL 243

Query: 236 NFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
           N    ++N ++  +      +     Q++S  +   A   E  +AH     G  +GLN  
Sbjct: 244 NATQHILNLMRSGSDDPEMVDISLICQEESYNLFLMAAEQEKTWAHYLFKDGSMIGLNKE 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
              QY+++I N R   IGL+  F    N  PW++  +    
Sbjct: 304 ILCQYIEYITNIRMQAIGLKTPFNTKTNSIPWINAWLSSDN 344


>gi|307244959|ref|ZP_07527056.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306854124|gb|EFM86332.1| Ribonucleoside-diphosphate reductase, beta subunit 1
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
          Length = 325

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/320 (20%), Positives = 130/320 (40%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              + P +Y    E   +  +++W+ TE     D+  ++    + D ER ++ R +   +
Sbjct: 9   RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYR--IDINDHERHVLTRAMLAIS 66

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +YR+   PE        A  E  H   + +++  LGL+  E+F+  +
Sbjct: 67  QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           ++  +  +  +   + +                EF+  L +F +  E +  +  F  ++S
Sbjct: 124 DIEPLMNRIRYMESFMKD---------KDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 174

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   ++ E+  L+T EF +  +T+  +A 
Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIVLYEILREEHSELFTPEFFEDLKTLSSQAF 234

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +  ++    E Y++   N     +GLEP +           W   
Sbjct: 235 EAECGILDWIFEEGDLSFISREEVENYIRSRYNNSLMTLGLEPPYDVNPELLKETEWFDI 294

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 295 EILSTKETDFFNKRSTDYSK 314


>gi|325268103|ref|ZP_08134749.1| ribonucleotide-diphosphate reductase beta subunit [Kingella
           denitrificans ATCC 33394]
 gi|324980488|gb|EGC16154.1| ribonucleotide-diphosphate reductase beta subunit [Kingella
           denitrificans ATCC 33394]
          Length = 384

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 131/342 (38%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   +   + M   +  +V +    KY           +  W P EV +  D   +    
Sbjct: 15  KNPNDPLTEPMFFGQPVNVARYDQQKYIAFENLIEKQISFFWRPEEVDLSRDRIDY---A 71

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +     +S PE   ++   AF E +HS ++ 
Sbjct: 72  NLPEHEKHIFISNLKYQTLLDSIQGRSPNVGFLPLVSIPELETWIETWAFFETIHSRSYT 131

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+   +   I A+A     Y   L   +                   
Sbjct: 132 HIIRNIVNDPSVVFDDIVQNEYILARAEDIACYYDDLIEYTQYFNLLGEGTHTVNGKIVE 191

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
               +  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 192 VSLHELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 250

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++  +         ++ QQ+   +  +A   E  +A      G  +GLN  
Sbjct: 251 TSTQHMLNLMRGGSEGTEWAQIAQDLQQECFDLFVKAAEQEKEWASYLFKDGSMIGLNKD 310

Query: 291 SCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
              QY+++I N R   +GL   F   T+NP PW++  +    
Sbjct: 311 ILCQYVEYITNHRMLAVGLPVAFPKSTQNPIPWINAWLSSDN 352


>gi|322515075|ref|ZP_08068083.1| ribonucleoside-diphosphate reductase beta subunit [Actinobacillus
           ureae ATCC 25976]
 gi|322118955|gb|EFX91132.1| ribonucleoside-diphosphate reductase beta subunit [Actinobacillus
           ureae ATCC 25976]
          Length = 326

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/320 (20%), Positives = 132/320 (41%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              + P +Y    E   +  +++W+ TE     D+  ++    + D ER ++ R +   +
Sbjct: 10  RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYR--IDINDHERHVLTRAMLAIS 67

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +YR+   PE        A  E  H   + +++  LGL+  E+F+  +
Sbjct: 68  QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 124

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           ++  +  +  +   + +                EF+  L +F +  E +  +  F  ++S
Sbjct: 125 DIEPLMNRIRYMESFMKD---------KDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 175

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   ++ E+  L+T EF ++ +T+  +A 
Sbjct: 176 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEELKTLSTQAF 235

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +  ++  + E Y++   N     +GLEP +           W   
Sbjct: 236 EAECGILDWIFEEGDLSFISREAVENYIRSRYNNSLMTLGLEPPYDVNPELLKETEWFDI 295

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 296 EILSTKETDFFNKRSTDYSK 315


>gi|295134784|ref|YP_003585460.1| ribonucleotide reductase [Zunongwangia profunda SM-A87]
 gi|294982799|gb|ADF53264.1| ribonucleotide reductase [Zunongwangia profunda SM-A87]
          Length = 324

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 129/320 (40%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    +   +   + W+ +EV    D+  + S   LT  E+ ++K++L   A
Sbjct: 7   RLNYKPFEYPGVLDFTDAINQSFWVHSEVDFTADVQDFHSH--LTTGEKDVVKKSLLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E     +    +Y+HL  PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QIEV-AVKSFWGDLYKHLPKPEFNGLGSTFAECEFRHSQAYSRLLEVLGYNNE--FAKVV 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           EVP+I  +  +  +        +      +  ++++  L +F ++ E +  ++ FA +LS
Sbjct: 122 EVPAIKKRIAYLTE--------ALEHTKAEDPKDYVSSLILFSILIENVSLFSQFAIVLS 173

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE +H N GI +INQI+ E P  + +E  +K   ++  + 
Sbjct: 174 FNRFKGVMKNVSNIIAWTSVDEQIHANAGIYIINQIREEYPDYFNEEMTRKLTDVVTRSI 233

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325
            +E          G    +N  +   +M+F  +     IGL   +  T     P  W  E
Sbjct: 234 EVEEEILDWIFENGQLENINKKNLMDFMKFRLDDSLKSIGLPKQYNITAAEYQPMLWFEE 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +      +FF  R  +Y +
Sbjct: 294 EVFANSLDDFFARRPVDYTK 313


>gi|330445621|ref|ZP_08309273.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328489812|dbj|GAA03770.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 377

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/342 (21%), Positives = 142/342 (41%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + R +   + M   +S +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QTRNDQLKEPMFFGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSGDRINY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  +   +F+   E   I  +A    +Y   L + +                 FT
Sbjct: 125 HIIRNIVNNPSVVFDDIVENEHIIKRAGDISKYYDALIAATNDYHRFGEGNHSADGVPFT 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +     E +Q+   +   A   E  +A      G  +GLN  
Sbjct: 244 TGTQHILNLLRTGQDDPEMAEIAVECEQECFDIFKSAAEQEKDWADYLFKDGSMIGLNKQ 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
              QY+++I N R   +GL P ++  T+NP PW++  +    
Sbjct: 304 ILCQYVEYITNLRMSAVGLRPAYEGATQNPIPWINSWLSSDN 345


>gi|261253084|ref|ZP_05945657.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           orientalis CIP 102891]
 gi|260936475|gb|EEX92464.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           orientalis CIP 102891]
          Length = 377

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/343 (22%), Positives = 132/343 (38%), Gaps = 25/343 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
               K   + +   L    +V +    K+    +      +  W P EV +  D   +  
Sbjct: 6   FNRTKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 64  -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT--------------- 175
           + +II ++  D G +F+   E   I  +A     Y   L   +                 
Sbjct: 123 YTHIIRNIVNDPGLVFDDIVENEHILKRAKDISGYYDDLIQLTNDYHRYGEGTHTINGEE 182

Query: 176 -TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
            T T    ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VTITLHNLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     +IN ++            +E +Q+   +  EA   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
               QY+++I N R   +GL   +   T NP PW++  +    
Sbjct: 303 DILCQYVEYITNIRMQAVGLGAAYPEATSNPIPWINAWLSSDN 345


>gi|240950330|ref|ZP_04754600.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           minor NM305]
 gi|240295141|gb|EER45960.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
           minor NM305]
          Length = 326

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 131/320 (40%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              + P +Y    E   +  +++W+ TE     D+  +++   +TD ER ++ R +   +
Sbjct: 10  RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--ITDHERHVLTRAMLAIS 67

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +YR+   PE        A  E  H   + +++  LGL+  E+F+  +
Sbjct: 68  QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 124

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           ++  +  +  +   + +                EF+  L +F +  E +  +  F  ++S
Sbjct: 125 DIEPLMNRIRYMESFMKD---------KDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 175

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   ++ E+  L+T  F ++ +T+  +A 
Sbjct: 176 FNKYKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPAFFEELQTLASQAF 235

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +  ++  +   Y++   N     +GLEP             W   
Sbjct: 236 EAEKGILDWIFEEGDLSFISKETVLNYIKSRYNNSLVTLGLEPPHDINPELLKETAWFDI 295

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 296 EILSTKETDFFNKRSTDYSK 315


>gi|163803511|ref|ZP_02197381.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4]
 gi|159172687|gb|EDP57538.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4]
          Length = 377

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 133/341 (39%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFV 191
           +II ++  D   +F+   E   I  +A     Y   L   +       + +     +   
Sbjct: 125 HIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHLLNGETVK 184

Query: 192 FYVV---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
             +                 E + FY  FA   +      M G A+  + I RDESLHLN
Sbjct: 185 VSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDESLHLN 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++            +E +Q+   +  EA   E  +A      G  +GLN   
Sbjct: 245 GTQHMINLLRNGQDDFIFMQIAEEVKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
             QY+++I N R   +GL   +   T NP PW++  +    
Sbjct: 305 LSQYVEYITNIRMQAVGLPKAYPEATTNPIPWINAWLSSDN 345


>gi|307129979|ref|YP_003881995.1| Ribonucleotide reductase of class Ia (aerobic), subunit beta
           [Dickeya dadantii 3937]
 gi|306527508|gb|ADM97438.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Dickeya dadantii 3937]
          Length = 376

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 130/337 (38%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLLEPMFFGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+       I  +A     +   L   +                   
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEEILKRAKDISGFYDELIELTSYYHLLGEGTHQVNGKTVN 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
               +  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 INVYELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++            +E QQ+   +   A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNLMRAGQDDPEMAKIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLPLPFETRTNPIPWINAWL 340


>gi|117920413|ref|YP_869605.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
           ANA-3]
 gi|117612745|gb|ABK48199.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella sp. ANA-3]
          Length = 391

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 133/337 (39%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   +   + M   +S +V +    KY    +      +  W P EV +  D   + S  
Sbjct: 23  QTPNDATREPMFFGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDYNS-- 80

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 81  -LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 139

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+       I  +A    +Y   L   +                   
Sbjct: 140 HIIRNIVNDPSVIFDDIVVNQEILRRATDIAEYYDHLIKLTQVYHLLGEGTHVIDGEPIE 199

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
             T+   +     +     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 200 VNTRTLKKALYLCMMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHL 258

Query: 236 NFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
           N    ++  ++   ++P +     E QQ++  +  +A   E  +A      G  +GLN  
Sbjct: 259 NSTQHILTIMQGGKDDPEMAEIAAECQQEAYNLFLKAAEQEKEWAKYLFKDGSMIGLNEQ 318

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N+R   + L   +    NP PWM   +
Sbjct: 319 ILCQYVEYITNQRMKSVNLPLPYAELSNPLPWMKNWL 355


>gi|153000811|ref|YP_001366492.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           baltica OS185]
 gi|160875520|ref|YP_001554836.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           baltica OS195]
 gi|151365429|gb|ABS08429.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS185]
 gi|160861042|gb|ABX49576.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS195]
          Length = 386

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 131/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   +   + M   +S +V +    KY    +      +  W P EV +  D   +    
Sbjct: 18  QTPNDATREPMFLGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---G 74

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 75  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 134

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
           +II ++  D   +F+       I ++A     Y   L   +         T   D  +  
Sbjct: 135 HIIRNIVNDPSVIFDDIVVNKEILSRATDIAAYYDHLIQLTQVFHLLGAGTHVIDGKEVI 194

Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           +             +     E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 195 VNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLN 254

Query: 237 FGIDV--INQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +  I Q   ++P +     E QQ++  +  +A   E  +A      G  +GLN   
Sbjct: 255 STQHILSIMQGGKDDPEMGEIAAECQQEAFDLFFKAAEQEKEWAKYLFKDGSMIGLNEQI 314

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY++FI N+R   + L   +    NP PWM   +
Sbjct: 315 LCQYVEFITNQRMKSVNLPQPYPEITNPLPWMKNWL 350


>gi|119944866|ref|YP_942546.1| ribonucleotide-diphosphate reductase subunit beta [Psychromonas
           ingrahamii 37]
 gi|119863470|gb|ABM02947.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Psychromonas ingrahamii 37]
          Length = 381

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 125/341 (36%), Gaps = 38/341 (11%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGW----AWEK-YLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   + M      VN     +Y       +E       +  W P E+ +  D   +    
Sbjct: 12  DAMKEPMFFGNP-VNV---ARYDQQRFAVFEMLIEKQLSFFWRPEEIDVSRDRIDF---L 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLPDHEQHIFISNLKYQTLLDSIQGRSPNIALLPIVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDADQEFLQ 187
           +I+ +L  +  E+F        I  +A     Y   L   +           D D   L+
Sbjct: 125 HILRNLFTEPAEIFEDIVTNVEIQKRATDISGYYDALIHATQFMQLHGLEQTDIDYINLE 184

Query: 188 D----------------LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           +                        E + FY  FA   +    + + G A+  + I RDE
Sbjct: 185 NQVEKLNLRAIKKKLYLCICSVNALEAIRFYVSFACSFAFAERDLLEGNAKIIKLIARDE 244

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAHETMPKG-FVG 286
           +LHLN    ++N            E   +       +  +A   E  +A      G  +G
Sbjct: 245 ALHLNSTQQILNLWADGKDDPEMAEIAIECFAEGREIFLQAAQQEKDWAKYLFKDGSMIG 304

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           LN     QY+++IAN R   IG  P F+   NP PW++  +
Sbjct: 305 LNEQILSQYVEYIANLRMQAIGYAPEFEVKSNPIPWINNWL 345


>gi|322832009|ref|YP_004212036.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
 gi|321167210|gb|ADW72909.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
          Length = 376

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 135/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    K+    +      +  W P E+ +  D   ++   
Sbjct: 8   QNKNDQLLEPMFFGQSVNVARFDQQKHEIFEKLIEKQLSFFWRPEEIDVSRDRIDFQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y  TL                    +  
Sbjct: 125 HIIRNIVNDPAIVFDDIVTNEEILKRAKDISGYYDTLIEMTSYYHLLGEGTHQVNGKTVV 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLRELKKKLYICLMSVNAL-EAVRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 243

Query: 236 NFGIDVIN--QIKIENPHLWTK--EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                 +N  +   ++P +     E QQ+   +   A   E  +A      G  +GLN  
Sbjct: 244 TGTQHALNLLRSGQDDPEMAEIALECQQECHDLFVLAAQQEKDWAEYLFKDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  FK   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDAPFKTRSNPIPWINAWL 340


>gi|21672460|ref|NP_660527.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
 gi|25091143|sp|Q8K9W4|RIR2_BUCAP RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|21623075|gb|AAM67738.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
          Length = 376

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 137/339 (40%), Gaps = 25/339 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ N   + M   +S ++ +    KY    +      +  W P E+ +  D   +   +
Sbjct: 8   KKKNNQLKEPMFFGQSVNIARYDQQKYNIFEKLIEKQLSFFWRPEEIDLSKDRIDF---D 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L  +E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLPSNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIVSIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  +   +F+      +I  +A     Y   L                 +     
Sbjct: 125 HIIRNIINNPSIVFDDIISNKNINDRAQDISIYYDELIRITAYWHLLGEGNHKINEKKVE 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                 +  L    +   V E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 INLKLLKRRLYLCLISVNVLEAIRFYVSFACSFAFAEREIMEGNAKIIRLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +  E  +   K    E ++++  +   A+  E  +A      G  +GLN   
Sbjct: 245 GTQHILNILNNEKNNENMKNTVLECREEAIKIFISASEQEKKWAKYLFQDGSMLGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
             QY+++I N R H IG +  F+ T NP PW++  ++  
Sbjct: 305 LCQYIEYITNIRMHAIGFKMPFEKTSNPIPWINSWLNSD 343


>gi|118602534|ref|YP_903749.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567473|gb|ABL02278.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 378

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 132/332 (39%), Gaps = 25/332 (7%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M    S +V +    K+    +      +  W P E+ +  D   +   + L  +E+ 
Sbjct: 16  QPMFFGDSMNVTRFDKQKFEIFEKLTEKQLSFFWRPEEIDVSKDKIDF---SKLLPNEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+      +A    +S PE   ++   +F E +HS ++ +II ++  
Sbjct: 73  IFVSNLQYQILLDSVQGRAPNIAFLPIVSLPEVENWIETWSFSETIHSRSYTHIIRAIIN 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSP--------SFTTGTKDADQEFLQDL--- 189
           + G +F+   +   I  +A  A ++   L           +     ++ +          
Sbjct: 133 EPGVIFDDIMKTDEIIQRAESASKHYDGLIKYTQAYLLHGTGKLKIQEEEVSIDLYCLKK 192

Query: 190 -----FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 +   + E + FY  FA   +      M G A+  + I RDE+LHL     ++N 
Sbjct: 193 QLYLTIMSVNILEAVRFYVSFACSFAFAERKVMEGNAKIIKMIARDEALHLTGTQHMLNL 252

Query: 245 IKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
           +      L  +    E Q +  TM  EA   E  +A      G  +GLNA   +QY+++I
Sbjct: 253 MSSGKDDLDMQKISKECQDEVITMFREACEQEKDWAEYLFRDGSMIGLNAQILKQYLEYI 312

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
            N R   + L  +F    NP PW++  +D   
Sbjct: 313 TNVRMKALNLSLIFDECTNPLPWINHWLDSDN 344


>gi|311064961|ref|YP_003971687.1| ribonucleoside-diphosphate reductase subunit beta NrdF
           [Bifidobacterium bifidum PRL2010]
 gi|310867281|gb|ADP36650.1| NrdF Ribonucleoside-diphosphate reductase beta chain
           [Bifidobacterium bifidum PRL2010]
          Length = 330

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 131/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISVPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    ++DDE  +           +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMSDDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   +     F+       +  KA   L Y +  S              
Sbjct: 112 HAKSYSSIFSTLCSTKEIDTAFDWSERNEFLQKKAEIVLDYYEGDS-------------- 157

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 158 -PLKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQR 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                     +E ++ +  +L+E    E+ Y      +  VGL     E+++++  N+  
Sbjct: 217 GLERVSDAKREEMREYTYNLLNELYDNEVEYTESLYER--VGLT-DDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEACDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|293193572|ref|ZP_06609842.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
           odontolyticus F0309]
 gi|292819928|gb|EFF78930.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
           odontolyticus F0309]
          Length = 320

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 68/341 (19%), Positives = 128/341 (37%), Gaps = 35/341 (10%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +     + N++   K    W+       N W+P ++P+ +DL  WK+   LT DE+LM
Sbjct: 4   EPVF-EAINWNKIQDDKDLEVWD---RLTGNFWLPEKIPLSNDLPSWKT---LTKDEQLM 56

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
             R        ++L      +++      P         AF E+VH+ ++  I ++L   
Sbjct: 57  TNRVFTGLTLLDTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLST 116

Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
           E   E F    E  ++  KA     Y                     +   V   + E  
Sbjct: 117 EEINESFRWSNENEALQKKAEIVKSYYDGND---------------PEKRKVASTMLESF 161

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            FY+GF   +      K+   A+  + I+RDE++H  +          E+      + + 
Sbjct: 162 LFYSGFYAPMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVNESSQERQDDLRD 221

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-- 317
            + ++L+E    E  Y  +      +GL     ++++++ AN+    +G E LF      
Sbjct: 222 YTYSLLYELYENEEQYTEDLY--DPLGLT-EDVKKFLRYNANKALMNLGYEALFPADATD 278

Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
            NP    +   +  +  +FF    + Y  G  +      WD
Sbjct: 279 VNPAILAALSPNADENHDFFSGSGSSYVMGEVVDTEDEDWD 319


>gi|224283650|ref|ZP_03646972.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           bifidum NCIMB 41171]
 gi|310288088|ref|YP_003939347.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium
           bifidum S17]
 gi|313140805|ref|ZP_07802998.1| ribonucleoside-diphosphate reductase subunit beta [Bifidobacterium
           bifidum NCIMB 41171]
 gi|309252025|gb|ADO53773.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium
           bifidum S17]
 gi|313133315|gb|EFR50932.1| ribonucleoside-diphosphate reductase subunit beta [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 330

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 131/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISVPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    ++DDE  +           +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMSDDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   +     F+       +  KA   L Y +  S              
Sbjct: 112 HAKSYSSIFSTLCSTKEIDAAFDWSERNEFLQKKAEIVLDYYEGDS-------------- 157

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 158 -PLKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQR 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                     +E ++ +  +L+E    E+ Y      +  VGL     E+++++  N+  
Sbjct: 217 GLERVSDAKREEMREYTYNLLNELYDNEVEYTESLYER--VGLT-DDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEACDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|238920521|ref|YP_002934036.1| ribonucleotide-diphosphate reductase subunit beta [Edwardsiella
           ictaluri 93-146]
 gi|238870090|gb|ACR69801.1| ribonucleoside-diphosphate reductase, beta subunit, putative
           [Edwardsiella ictaluri 93-146]
          Length = 376

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/336 (19%), Positives = 128/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +  +V +    K+    +      +  W P EV +  D   ++   
Sbjct: 8   QKKNDQLLEPMFFGQPVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFL----- 186
           +II ++  D   +F+       I  +A     Y   L   + +     +   +       
Sbjct: 125 HIIRNIVTDPSLVFDDIVSNEEILKRARDISAYYDDLIETTGYYHLLGEGTHQINGKPVT 184

Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++             E   +   +  +A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNLMRAGQDDPEMAEIATECASQCYDLFVQAAQQEKEWAGYLFRDGSMIGLNRDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFETRSNPIPWINAWL 340


>gi|149190928|ref|ZP_01869191.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii
           AK1]
 gi|148835283|gb|EDL52257.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii
           AK1]
          Length = 377

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 134/342 (39%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +  +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QTKNNALKEPMFLGQPVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF-----------------T 175
           +II ++  D G +F+   E   I  +A     Y   L   +                   
Sbjct: 125 HIIRNIVNDPGVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRFGEGTHNIKGEEVK 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
               D  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLYDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                +IN ++            +E +Q    +  EA   E  +A      G  +GLN  
Sbjct: 244 TGTQHMINLLRNGQDDFSFMQIAEECKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
              QY+++I+N R   +GL+  +   T NP PW++  +    
Sbjct: 304 ILCQYVEYISNVRMQAVGLDAAYPEATSNPIPWINAWLSSDN 345


>gi|325955614|ref|YP_004239274.1| ribonucleotide reductase [Weeksella virosa DSM 16922]
 gi|323438232|gb|ADX68696.1| ribonucleotide reductase [Weeksella virosa DSM 16922]
          Length = 324

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 121/320 (37%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y        +     W+ +EV    D   + S   L   ER  IK +L   A
Sbjct: 7   RINYKPFEYPEILTFTEAINKAFWVHSEVDFTADTQDFHSHLNL--AERTAIKHSLLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E          IY H   PE        A  E  HS  +  ++  LG ++   F    
Sbjct: 65  QIEV-AVKTFWGDIYDHFPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNDD--FQTLL 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           ++P I  + ++         S +         + ++  L +F ++ E +  ++ FA ILS
Sbjct: 122 DIPVIKGRVDY--------LSNALKDAKSSDRKSYVISLILFSILIENVSLFSQFAIILS 173

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE +H N GI ++N+IK E P  +++E  Q+ + ++  + 
Sbjct: 174 FTRFKGYMKNVSNIIAWTSVDEQIHANAGIYIVNKIKEEFPDFFSEETIQEIKNVVTHSI 233

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
            +E         +G    +       +M++  +    +IG   ++  T     P  W  E
Sbjct: 234 EVESQILDWIFEQGEIETIKKKDLLNFMKYRVDESMLKIGFGKIYNITAEQYQPMVWFEE 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +      +FF  R  +Y +
Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313


>gi|323650974|ref|YP_004243617.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. natto]
 gi|323461614|dbj|BAJ77030.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. natto]
          Length = 347

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 130/334 (38%), Gaps = 13/334 (3%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +RM +  S +     +     +E         W+P EV M  D   W +   + + E+ +
Sbjct: 20  ERMFDDVSGILFWDDIINQVYYELIKEMREVFWIPDEVSMSKDKVQWAT--EMNEMEQEL 77

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
               +G  A  +S+      +A Y ++ +   +  +   A  E +H+ ++ YI++S+   
Sbjct: 78  FLNAIGILAVLDSIATYFDNVAAY-YIRDSAIKALMAFVAAMETIHNESYTYILSSVSSK 136

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
                 +  +V     K  + ++    L    F    ++   E      V     EG+ F
Sbjct: 137 -----AVSLDVFERPKKNEFMIR-RNKLMMDLFDEFIQNPTPETFAKGLVAMSGLEGLCF 190

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
             GF       R  KM G     QYI RDE  H  F   ++  I  + P L T+EF +  
Sbjct: 191 VNGFTPFYHFNRNGKMFGTGTVIQYIQRDEMKHSYFQTILVRDILTQYPELNTEEFSEFV 250

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
                E   LE  +  +   K    ++    ++Y+ + AN     +GL+ +F   +NP P
Sbjct: 251 YDFFTELVQLEREFCEDLY-KNTPDIDIEEVKEYIGYRANLILDNLGLDQIFAAKKNPMP 309

Query: 322 W---MSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
           W            +++FFE +   Y +  E K D
Sbjct: 310 WITAFDPDNLNNTKRDFFEDKEVNYGKANEQKND 343


>gi|238761950|ref|ZP_04622923.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           kristensenii ATCC 33638]
 gi|238699678|gb|EEP92422.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           kristensenii ATCC 33638]
          Length = 400

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 70/336 (20%), Positives = 129/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +S +V +    K+    +      +  W P E+ +  D   +   N
Sbjct: 32  QNKNNQLLEPMFFGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 88

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 89  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 148

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y   L                 +     
Sbjct: 149 HIIRNIVNDPSIVFDDIVTNEEILKRAKDISGYYDDLIEMTSYYHLLGEGTHQVNGKTVV 208

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                 ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 209 VNLRELKKQLYLCVMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLT 268

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++         E  ++ +   ++    A   E  +A      G  +GLN   
Sbjct: 269 GTQHIINLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKEI 328

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F    NP PW++  +
Sbjct: 329 LCQYVEYITNIRMQAVGLGVPFNTRTNPIPWINSWL 364


>gi|212635281|ref|YP_002311806.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           piezotolerans WP3]
 gi|212556765|gb|ACJ29219.1| Ribonucleoside-diphosphate reductase, beta subunit [Shewanella
           piezotolerans WP3]
          Length = 376

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/311 (23%), Positives = 118/311 (37%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   + S   L   E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEVDVSKDKIDYAS---LPAHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 90  RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILK 149

Query: 158 KANWALQYTQTLS----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L                        TK   ++ L    V   V E + F
Sbjct: 150 RATDIAAYYDKLIRLSQACQLLGEGSHQIDGEVVEVTKREIKKALYLCMVSVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y  FA   +    N M G A+  + I RDE+LHLN    ++  +          E  ++ 
Sbjct: 210 YVSFACSFAFAERNVMEGNAKIIRLIARDEALHLNSTQHILKIMHAGKDDPEMAEIAKEC 269

Query: 262 RT----MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                 +  +A   E  +A      G  +GLN     QY+++I N R   + LE  +   
Sbjct: 270 EQTAIDIFVKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEYITNERMKAVNLESPYAEQ 329

Query: 317 ENPFPWMSEVI 327
            NP PWM   +
Sbjct: 330 SNPLPWMKNWL 340


>gi|291455662|ref|ZP_06595052.1| ribonucleoside-diphosphate reductase, beta subunit [Bifidobacterium
           breve DSM 20213]
 gi|291382590|gb|EFE90108.1| ribonucleoside-diphosphate reductase, beta subunit [Bifidobacterium
           breve DSM 20213]
          Length = 330

 Score =  153 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 130/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +           +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y +                +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y      +  VGL     E+++++  N+  
Sbjct: 217 GIAQLTDAERMDMQDYTYDLLNELYDNEVEYTQSLYDR--VGLT-EDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|85059563|ref|YP_455265.1| ribonucleotide-diphosphate reductase subunit beta [Sodalis
           glossinidius str. 'morsitans']
 gi|84780083|dbj|BAE74860.1| ribonucleoside-diphosphate reductase 1 beta subunit [Sodalis
           glossinidius str. 'morsitans']
          Length = 376

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 128/328 (39%), Gaps = 25/328 (7%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M   +S +V +    KY    +      +  W P EV +  D   ++    L + E+ 
Sbjct: 16  EPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ +II ++  
Sbjct: 73  IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVN 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTTGTKDADQE 184
           D   +F+       I  +A     Y   L                 +           ++
Sbjct: 133 DPSLVFDDIVTNEEILKRAKDISGYYDGLIELTSYYHLLGEGTHQVNGKTVVVNLHELKK 192

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L    +     E + FY  FA   +      M G A+  + I RDE+LHL     ++N 
Sbjct: 193 KLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTSTQHMLNL 252

Query: 245 IKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
           ++            +E QQ+S  +   A   E  +A      G  +GLN     QY+++I
Sbjct: 253 MRSGEDDPEMAEIARECQQESYDLFLLAAQQEKEWASYLFRDGSMIGLNKDILCQYVEYI 312

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            N R   +GL+  F    NP PW++  +
Sbjct: 313 TNIRMQSVGLDLPFATRSNPIPWINSWL 340


>gi|269139684|ref|YP_003296385.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202]
 gi|267985345|gb|ACY85174.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202]
 gi|304559553|gb|ADM42217.1| Ribonucleotide reductase of class Ia, beta subunit [Edwardsiella
           tarda FL6-60]
          Length = 376

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 67/336 (19%), Positives = 129/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +  +V +    K+    +      +  W P EV +  D   ++   
Sbjct: 8   QKKNDQLLEPMFFGQPVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFL----- 186
           +II ++  D   +F+       I  +A     Y   L   + +     +   +       
Sbjct: 125 HIIRNIVTDPALVFDDIVSNEEILKRARDISAYYDDLIESTGYYHLLGEGTHQINGKPVS 184

Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++         E     + +   +  +A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNLMRSGQDDPEMAEIAAECEDQCYDLFVQAAQQEKEWAGYLFRDGSMIGLNRDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLSLPFETRSNPIPWINAWL 340


>gi|148825799|ref|YP_001290552.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittEE]
 gi|148715959|gb|ABQ98169.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittEE]
          Length = 376

 Score =  153 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 130/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFSWRPEEVDVSQDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
           +II ++  D   +F+       I  +A     Y   L   S         T T D  +  
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYGEGTYTVDGKECV 184

Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           +             +     E + FY  FA   +      M G A+  ++I RDE+LHL 
Sbjct: 185 VTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N +             +E +Q++  +   A   E A+A      G  +GLN   
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNRDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340


>gi|42543287|pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
           Ferrous Ions At Neutral Ph
 gi|42543288|pdb|1PJ0|B Chain B, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
           Ferrous Ions At Neutral Ph
 gi|42543289|pdb|1PJ1|A Chain A, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
           Ions At Ph 5
 gi|42543290|pdb|1PJ1|B Chain B, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
           Ions At Ph 5
          Length = 375

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  + P EV +  D   ++   
Sbjct: 7   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFFRPEEVDVSRDRIDYQ--- 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    ES+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 64  ALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242

Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N  +   ++P +    +E +Q+   +  +A   E  +A      G  +GLN  
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL+  F    NP PW++  +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWL 339


>gi|312885176|ref|ZP_07744856.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367189|gb|EFP94761.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 377

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 132/343 (38%), Gaps = 25/343 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
               K   + +   L    +V +    K+    +      +  W P EV +  D   +  
Sbjct: 6   FNRTKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDF-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 64  -NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT--------------- 175
           + +II ++  D G +F+   E   I  +A     Y   L   +                 
Sbjct: 123 YTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDLIQLTNDYHRYGEGKHVIGGEE 182

Query: 176 -TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
              +    ++ L    +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VNVSLHNLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     +IN ++            +E +Q+   +  +A   E  +A      G  +GLN 
Sbjct: 243 LTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKDAAEQEKEWAEYLFKDGSMIGLNK 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
               QY+++I N R   +GL+  +   T NP PW++  +    
Sbjct: 303 DILSQYVEYITNIRMQAVGLDAAYPEATSNPIPWINAWLSSDN 345


>gi|323494790|ref|ZP_08099889.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           brasiliensis LMG 20546]
 gi|323310983|gb|EGA64148.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           brasiliensis LMG 20546]
          Length = 377

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 73/340 (21%), Positives = 134/340 (39%), Gaps = 26/340 (7%)

Query: 15  KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            + +   + M   +S +V +    K+    +      +  W P EV +  D   +   N 
Sbjct: 9   NKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NK 65

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +
Sbjct: 66  LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRSYTH 125

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------TG 177
           II ++  D G +F+   E   I  +A     Y   L   +                  T 
Sbjct: 126 IIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDLIQMTNDYHRYGEGTHQINGEEVTI 185

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL  
Sbjct: 186 KLHDLKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTG 245

Query: 238 GIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
              +IN ++            +E +Q+   +  +A   E  +A      G  +GLN    
Sbjct: 246 TQHMINLLRNGQDDFSFMQIAEECKQECFDLFKDAAEQEKEWAEYLFKDGSMIGLNKDIL 305

Query: 293 EQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
            QY+++I N R   +GL+  +   T NP PW++  +    
Sbjct: 306 CQYVEYITNIRMQAVGLDAAYPEATSNPIPWINAWLSSDN 345


>gi|293395206|ref|ZP_06639492.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582]
 gi|291422383|gb|EFE95626.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582]
          Length = 376

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 133/336 (39%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    K+    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLLEPMFFGQSVNVARFDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFL----- 186
           +II ++  D   +F+       I  +A     Y   L   + +     +   +       
Sbjct: 125 HIIRNIVNDPALVFDDIVTNEEIKKRAKDISGYYDDLIEMTSYYHLLGEGTHQVNGQSVT 184

Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++   ++P +     E QQ+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAQQEKEWAEYLFSGGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   FK   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLGAPFKTRSNPIPWINAWL 340


>gi|23335914|ref|ZP_00121145.1| COG0208: Ribonucleotide reductase, beta subunit [Bifidobacterium
           longum DJO10A]
 gi|189440326|ref|YP_001955407.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           longum DJO10A]
 gi|189428761|gb|ACD98909.1| Ribonucleotide reductase beta subunit [Bifidobacterium longum
           DJO10A]
          Length = 330

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 130/351 (37%), Gaps = 32/351 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++PI    K + + D+    +  + N+L   K    W+       N W+P +VP+ +D+ 
Sbjct: 1   MAPISIPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            W+    +T+DE  +  R        +++      +++      P         AF E+V
Sbjct: 55  SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111

Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++  I ++L   E     F+       +  KA   L Y +                +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
                 V   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
              +       + Q  +  +L+E    E+ Y      +  V L     E+++++  N+  
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VDLT-DDVEKFLRYNGNKAL 273

Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             +G   LF       NP    +   +  +  +FF    + Y  G   + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324


>gi|50120137|ref|YP_049304.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610663|emb|CAG74108.1| ribonucleoside-diphosphate reductase 1 beta chain [Pectobacterium
           atrosepticum SCRI1043]
          Length = 376

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 134/336 (39%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y  +L                 +    T
Sbjct: 125 HIIRNIVNDPSLVFDDIVANEEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKTVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
               A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLHALKKQLYVCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++  +         +E QQ+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQGVGLSLPFQTRTNPIPWINAWL 340


>gi|89074073|ref|ZP_01160574.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           sp. SKA34]
 gi|89050211|gb|EAR55722.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
           sp. SKA34]
          Length = 377

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 139/342 (40%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + R +   + M   +S +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QTRNDQLKEPMFFGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSGDRINY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  NLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  +   +F+   E   I  +A    +Y   L + +                 FT
Sbjct: 125 HIIRNIVNNPSVVFDDIVENEHIVKRAGDISKYYDDLITVTNDYNRFGEGNHSANGIPFT 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++  +          E +Q    +   A   E  +A      G  +GLN  
Sbjct: 244 TGTQHILNLLRNGHDDPEMVEIATECEQDCFDLFKAAAEQEKEWADYLFKDGSMIGLNKQ 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
              QY+++I N R   +GL P ++  T+NP PW++  +    
Sbjct: 304 ILCQYVEYITNLRMVAVGLRPAYEGATQNPIPWINSWLSSDN 345


>gi|188533366|ref|YP_001907163.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia
           tasmaniensis Et1/99]
 gi|188028408|emb|CAO96269.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           tasmaniensis Et1/99]
          Length = 376

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 134/336 (39%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLLEPMFFGQPVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I ++A     Y   L                 +    T
Sbjct: 125 HIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGEGTHQVNGKTIT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
               A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++         E  ++ R   ++    A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQEKEWAEYLFSGGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R + +GL+  FK   NP PW++  +
Sbjct: 305 LCQYIEYITNIRMNAVGLDLPFKTRSNPIPWINSWL 340


>gi|300717619|ref|YP_003742422.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           billingiae Eb661]
 gi|299063455|emb|CAX60575.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           billingiae Eb661]
          Length = 376

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 136/336 (40%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N  D+ M   +S +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNNQLDEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           GL D E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  GLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS--------FTTGTKDADQE 184
           +II ++  D   +F+       I ++A     Y   L   +         T         
Sbjct: 125 HIIRNIVNDPAIVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGEGTHQVNGKSIT 184

Query: 185 FLQDLFVFYVVF--------EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                    +          E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 INLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +   ++P +    +E +Q+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLLRSGEDDPEMAEIARESRQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R H +GL+  FK   NP PW++  +
Sbjct: 305 LCQYIEYITNIRMHAVGLDLPFKTRSNPIPWINSWL 340


>gi|261496013|ref|ZP_05992423.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261308263|gb|EEY09556.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
          Length = 325

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 130/320 (40%), Gaps = 19/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              + P +Y    E   +  +++W+ TE     D+  +++   + D ER ++ R +   +
Sbjct: 9   RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--INDHERHVLTRAMLAIS 66

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +YR+   PE        A  E  H   + +++  LGL+  E+F+   
Sbjct: 67  QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIH 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+  +  +  +   + +                EF+  L +F +  E +  +  F  ++S
Sbjct: 124 EIEPLMNRIRYMESFMKD---------KDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMS 174

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI +   ++ E+  L+T EF +  +T+ ++A 
Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAF 234

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E         +G +  +   + E Y++   N     +GLEP             W   
Sbjct: 235 EAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLEPPHDIDPEFLKETEWFDI 294

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I   KE +FF  R T+Y +
Sbjct: 295 EILSTKETDFFNKRSTDYSK 314


>gi|269794349|ref|YP_003313804.1| ribonucleoside-diphosphate reductase class Ib subunit beta
           [Sanguibacter keddieii DSM 10542]
 gi|269096534|gb|ACZ20970.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Sanguibacter keddieii DSM 10542]
          Length = 325

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 16  NWNRVEDEKDSEVWD---RLTGNFWLPEKVPVSNDIQSWAT---LTPVEKELTTRVFTGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L   +   + F 
Sbjct: 70  TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLISTQEIDDAFR 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L+Y    S                    V   + E   FY+GF  
Sbjct: 130 WSEENANLQRKAEIVLEYYHGDS---------------PLKRKVASTLLESFLFYSGFYL 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       E +  +  +L E
Sbjct: 175 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKLSPAERDEMKAYTFELLFE 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 235 LYENEVQYTADLYDG--VGLT-EDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 291

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324


>gi|238788616|ref|ZP_04632408.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           frederiksenii ATCC 33641]
 gi|238723211|gb|EEQ14859.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           frederiksenii ATCC 33641]
          Length = 383

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 66/337 (19%), Positives = 130/337 (38%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +  +V +    K+    +      +  W P E+ +  D   ++   
Sbjct: 15  QNKNNQLLEPMFFGQPVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDYQ--- 71

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 72  NLPEHEKHIFISNLKYQTLLDSIQGRSPNIALLPIISIPELETWVETWSFSETIHSRSYT 131

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    +  
Sbjct: 132 HIIRNIVNDPAIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVV 191

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 192 VNLRELKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 250

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++         E  ++ +   ++    A   E  +A      G  +GLN  
Sbjct: 251 TGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKE 310

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL   F    NP PW++  +
Sbjct: 311 ILCQYVEYITNIRMQAVGLGIPFNTRTNPIPWINSWL 347


>gi|323497713|ref|ZP_08102728.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           sinaloensis DSM 21326]
 gi|323317189|gb|EGA70185.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           sinaloensis DSM 21326]
          Length = 377

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 134/341 (39%), Gaps = 28/341 (8%)

Query: 15  KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           K+ +   + M   +S +V +    K+    +      +  W P EV +  D   +   N 
Sbjct: 9   KKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NK 65

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +
Sbjct: 66  LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRSYTH 125

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-----------------T 176
           II ++  D G +F+   E   I  +A     Y   L   +                    
Sbjct: 126 IIRNIVNDPGIVFDDIVENEHILKRAEDISHYYDDLIQLTNDYHRYGEGTHTINGEEVSI 185

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
              D  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 186 KLHDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++            +E +Q+   +  EA   E  +A      G  +GLN   
Sbjct: 245 GTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
             QY+++I N R   +GL   +   T NP PW++  +    
Sbjct: 305 LCQYVEYITNIRMQAVGLGAAYPEATSNPIPWINAWLSSDN 345


>gi|153835812|ref|ZP_01988479.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio harveyi
           HY01]
 gi|148867435|gb|EDL66832.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio harveyi
           HY01]
          Length = 377

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 133/341 (39%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFV 191
           +II ++  D   +F+   E   I  +A     Y   L   +       + +     +   
Sbjct: 125 HIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHVLNGETVK 184

Query: 192 FYVV---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
             +                 E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 185 VSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLN 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++            +E +Q+   +  EA   E  +A      G  +GLN   
Sbjct: 245 GTQHMINLLRNGQDDFSFMQIAEEAKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
             QY+++I N R   +GL   +   T NP PW++  +    
Sbjct: 305 LSQYVEYITNIRMQAVGLPAAYPEATSNPIPWINAWLSSDN 345


>gi|148978906|ref|ZP_01815226.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales
           bacterium SWAT-3]
 gi|145962104|gb|EDK27390.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales
           bacterium SWAT-3]
          Length = 377

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 75/342 (21%), Positives = 134/342 (39%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +S +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QKKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D G +F+   E   I  +A     Y   L                       
Sbjct: 125 HIIRNIVNDPGLVFDDIVENEEILKRAKDIAFYYDDLIKLTADYHRYGEGNHNINGEDVK 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
               D  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 ISLHDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                +IN ++            +E +Q+   +  EA   E  +A      G  +GLN  
Sbjct: 244 TGTQHMINLLRNGQDDFAFMQIAEECKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
              QY+++I N R   +GL   +   T NP PW++  +    
Sbjct: 304 ILCQYVEYITNIRMQAVGLGTAYPEATSNPIPWINAWLSSDN 345


>gi|84386981|ref|ZP_00990005.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           splendidus 12B01]
 gi|86148466|ref|ZP_01066756.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
           MED222]
 gi|218709927|ref|YP_002417548.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           splendidus LGP32]
 gi|84378271|gb|EAP95130.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           splendidus 12B01]
 gi|85833763|gb|EAQ51931.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
           MED222]
 gi|218322946|emb|CAV19123.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           splendidus LGP32]
          Length = 377

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 133/341 (39%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +++ +   + M   +S +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QQKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP----------SFTTGTKDAD 182
           +II ++  D G +F+   E   I  +A     Y   L             +     +D  
Sbjct: 125 HIIRNIVNDPGVVFDDIVENEEILKRAKDIAFYYDDLIKLTADYHRYGEGNHNINGEDVK 184

Query: 183 QEFL------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 ISLHDLKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++            +E +Q+   +  EA   E  +A      G  +GLN   
Sbjct: 245 GTQHMINLLRNGQDDFEFMQIAEECKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
             QY+++I N R   +GL   +   T NP PW++  +    
Sbjct: 305 LCQYVEYITNIRMQAVGLGTAYPEATSNPIPWINAWLSSDN 345


>gi|42565480|gb|AAS21007.1| ribonucleoside-diphosphate reductase R2 [Hyacinthus orientalis]
          Length = 197

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 82/211 (38%), Gaps = 20/211 (9%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
                  V ++ +L    D   + P+KY   WE Y  A  + W   EV +  D   W+  
Sbjct: 1   MPSVPSAVAEEPLLAPNPDRFCMFPIKYPEIWEMYKKAEASFWTAEEVDLSQDTRHWE-- 58

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             LT DER  I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS  +
Sbjct: 59  -ALTADERHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMY 117

Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             ++ S   D  E   LF+    +P +  KA WAL++     S                 
Sbjct: 118 SLLLESYIKDPDEKNRLFHAIETIPCVAKKAEWALRWIDGGKS--------------FAQ 163

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
             V +   EG++F      I  L +   M G
Sbjct: 164 RVVAFACVEGIFFSGVSCSIFWLKKRGLMPG 194


>gi|332162349|ref|YP_004298926.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318606422|emb|CBY27920.1| ribonucleotide reductase of class Ia (aerobic),beta subunit
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666579|gb|ADZ43223.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330864218|emb|CBX74276.1| ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           enterocolitica W22703]
          Length = 376

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 131/337 (38%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +S +V +    K+    +      +  W P E+ +  D   +   N
Sbjct: 8   QNKNNQLLEPMFFGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    +  
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVV 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLRELKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++         E  ++ +   ++    A   E  +A      G  +GLN  
Sbjct: 244 TGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKE 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL   F    NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLGVPFNTRTNPIPWINSWL 340


>gi|307104534|gb|EFN52787.1| hypothetical protein CHLNCDRAFT_10712 [Chlorella variabilis]
          Length = 214

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 20/225 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            + +L A ++   LLP+KY   +E Y  A  ++W   EV +  D+  W+    LTDDER 
Sbjct: 1   KEPILQANNERFCLLPVKYDRCFEYYKQAQASYWTAEEVDLSQDMRDWR---KLTDDERH 57

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            +   L FFA+S+ +V  N+     + +  PE R +   Q+  EAVHS  +  ++     
Sbjct: 58  FVSYVLAFFAASDGIVLENLSTRFMQEVQIPEARAFYAFQSAIEAVHSEMYGLLLEQYIR 117

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LF+    +P +  KA WA+++ ++                   +  V Y   E
Sbjct: 118 DPDERDLLFHAVDTIPCVQKKAQWAMKWIES--------------SSCFAERLVAYACVE 163

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
           G+ F   F  I  L +   M G+    + I RDE LH +F   + 
Sbjct: 164 GIHFSGSFCSIFWLKKRQLMPGLTFSNEMISRDEGLHTDFACHLY 208


>gi|294637129|ref|ZP_06715438.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella
           tarda ATCC 23685]
 gi|291089663|gb|EFE22224.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella
           tarda ATCC 23685]
          Length = 376

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 130/337 (38%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    K+    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLLEPMFFGQPVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+       I  +A     Y   L   +                   
Sbjct: 125 HIIRNIVTDPSVVFDDIVSNEEILKRARDISVYYDDLIESTGYYHLLGEGTHQVNGKTVI 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              +D  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++         E     + +   +  +A   E  +A      G  +GLN  
Sbjct: 244 TGTQHILNLMRSGQDDPEMAEIAAECETQCYDLFVQAAQQEKDWASYLFRDGSMIGLNRD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL   F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLSLPFETRSNPIPWINAWL 340


>gi|319760602|ref|YP_004124540.1| ribonucleoside-diphosphate reductase 1 subunit beta [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318039316|gb|ADV33866.1| ribonucleoside-diphosphate reductase 1 subunit beta [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 376

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 133/335 (39%), Gaps = 25/335 (7%)

Query: 15  KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           K+ N   + M   +  ++ +    K+    +      +  W P E+ +  D   ++S   
Sbjct: 9   KKNNQLLEPMFLGQPVNIVRFDQQKHIIFEKLIEKQLSFFWRPEEIDISKDRIDYQS--- 65

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +
Sbjct: 66  LPDHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPELETWVETWSFFETIHSRSYTH 125

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQEFLQDLFVF 192
           II ++      +F+       I  +A     Y   L    ++            +++   
Sbjct: 126 IIRNIVTHPSSVFDDIVTNKEILKRAKDISIYYDDLIKLTNYYHILGPGIHTINKNIVAV 185

Query: 193 YV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
            +               V E + FY  FA   +      M G A+  ++I RDESLHL+ 
Sbjct: 186 NLHELKKKLYLCLISINVLEAIRFYVSFACSFAFAERKLMEGNAKIIRFIARDESLHLSA 245

Query: 238 GIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
              ++N ++         E    +Q +S  +   A   E  +AH     G  +GLN    
Sbjct: 246 TQHILNLMQSGADDPEMAEISLMYQSESYNLFLMAAEQEKMWAHYLFKDGSMIGLNKEIL 305

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            QY+++I N R   IGL+  F    N  PW++  +
Sbjct: 306 CQYIEYITNIRMQAIGLKAPFHIKANVIPWINSWL 340


>gi|325675841|ref|ZP_08155525.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
 gi|325553812|gb|EGD23490.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
          Length = 335

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 125/330 (37%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT +E+ +  R     
Sbjct: 26  NWNRVPDEKDSEVWD---RLTGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGL 79

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       + F 
Sbjct: 80  TLLDTIQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFR 139

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   L Y +                       V   + E   FY+GF  
Sbjct: 140 WSEENPNLQRKAQIVLDYYKGDD---------------PLKRKVASTLLESFLFYSGFYL 184

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 185 PMYWASRAKLTNTADVIRLIIRDEAVHGYYIGYKYQRGLERVTEAEREELKNYTFELLFE 244

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 245 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 301

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +    + D
Sbjct: 302 LSPNADENHDFFSGSGSSYVIGKAVNTEDD 331


>gi|21959884|gb|AAM86526.1|AE013899_3 ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Yersinia
           pestis KIM 10]
 gi|45435621|gb|AAS61179.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Microtus str. 91001]
          Length = 391

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 132/337 (39%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +S +V +    K+    +      +  W P E+ +  D   +   N
Sbjct: 23  QNKNNQLLEPMFFGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 79

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 80  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 139

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    +  
Sbjct: 140 HIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVV 199

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              +D  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 200 VKLRDLKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 258

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAP 290
                ++N +++        E  ++ +   ++    A   E  +A      G  +GLN  
Sbjct: 259 TGTQHILNLMRLGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKE 318

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL   F    NP PW++  +
Sbjct: 319 ILCQYVEYITNIRMQAVGLGIPFSTRTNPIPWINSWL 355


>gi|156975012|ref|YP_001445919.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio harveyi
           ATCC BAA-1116]
 gi|156526606|gb|ABU71692.1| hypothetical protein VIBHAR_02734 [Vibrio harveyi ATCC BAA-1116]
          Length = 377

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 133/341 (39%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFV 191
           +II ++  D   +F+   E   I  +A     Y   L   +       + +     +   
Sbjct: 125 HIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHVLNGETVK 184

Query: 192 FYVV---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
             +                 E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 185 VSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLN 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++            +E +Q+   +  EA   E  +A      G  +GLN   
Sbjct: 245 GTQHMINLLRNGQDDFLFMQIAEEEKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
             QY+++I N R   +GL   +   T NP PW++  +    
Sbjct: 305 LSQYVEYITNIRMQAVGLPAAYPEATSNPIPWINAWLSSDN 345


>gi|260778827|ref|ZP_05887719.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604991|gb|EEX31286.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 377

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/340 (21%), Positives = 133/340 (39%), Gaps = 26/340 (7%)

Query: 15  KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            + +   + M   +S +V +    K+    +      +  W P EV +  D   +   N 
Sbjct: 9   NKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NK 65

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +
Sbjct: 66  LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRSYTH 125

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------SPSFTTGTKDADQ 183
           II ++  D G +F+   E   I  +A     Y   L             + T   +D   
Sbjct: 126 IIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDLIQMTNDYHRYGEGTHTINGEDVKI 185

Query: 184 EFL------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                        +     E + FY  FA   +      M G A+  + I RDE+LHL  
Sbjct: 186 SLHELKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTG 245

Query: 238 GIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
              +IN ++            +E +Q+   +  +A   E  +A      G  +GLN    
Sbjct: 246 TQHMINLLRNGQDDFSFMQIAEECKQECFDLFKDAAEQEKEWAEYLFKDGSMIGLNKDIL 305

Query: 293 EQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
            QY+++I N R   +GL+  +   T NP PW++  +    
Sbjct: 306 CQYVEYITNIRMQAVGLDAAYPEATSNPIPWINAWLSSDN 345


>gi|116670901|ref|YP_831834.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter sp.
           FB24]
 gi|116611010|gb|ABK03734.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Arthrobacter sp. FB24]
          Length = 324

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/336 (19%), Positives = 126/336 (37%), Gaps = 34/336 (10%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++   K    W       NN W+P +VP+ +D+  W +   LT DE+ +  R  
Sbjct: 12  EAINWNRIQDDKDVDVWN---RLVNNFWLPEKVPLSNDVQSWAT---LTPDEQQLTMRVF 65

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
                 +++      +++      P         AF E+VH+ ++  I ++L   +   E
Sbjct: 66  TGLTLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDE 125

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            F    E  ++  KA   + Y Q                       V   + E   FY+G
Sbjct: 126 AFRWSTENANLQKKAQIVMDYYQGDD---------------PLKRKVASTLLESFLFYSG 170

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +
Sbjct: 171 FYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVSEEKRQEIKDYTFEL 230

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFP 321
           L E    E+ Y H+      VGL A   ++++ + AN+    +G E +F       NP  
Sbjct: 231 LFELYENEVQYTHDLY--DSVGL-AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAI 287

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
             +   +  +  +FF    + Y  G  +      WD
Sbjct: 288 LSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323


>gi|156564205|ref|YP_001429715.1| nrd beta subunit [Bacillus phage 0305phi8-36]
 gi|154622902|gb|ABS83782.1| nrd beta subunit [Bacillus phage 0305phi8-36]
          Length = 352

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/311 (25%), Positives = 139/311 (44%), Gaps = 18/311 (5%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           ++   +   N W P E+ M++D  +W   + LT  E+    R     A  +SL     +L
Sbjct: 48  YDISQTLEANFWRPVEIKMKEDEKMW---DSLTPIEQDTFLRVGTALACLDSLQVK-AIL 103

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKAN 160
            + R  +N          A +EA H+ ++ YI +SL     + + FN   + P +  +  
Sbjct: 104 EVIRFTTNSALANISAFIAQQEATHTTSYSYITSSLVRLPVQNQYFNETMKHPVLAKRNK 163

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
             L   +  +        ++   + L  + V  +  EG++FY+GFA    L    KM+  
Sbjct: 164 LVLDVYEDFA--------ENPSLQNLFRMLVQSINLEGIYFYSGFAFFYWLASQQKMMKS 215

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
           +    YI RDE  H  F   +I ++  ENP L T+E  Q     L EA   E  +A E +
Sbjct: 216 STMISYIQRDEMQHAYFIGLLIRRLLTENPELNTQENAQYIVDSLKEAVATEKEWAGEIL 275

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW---MSEVIDLKKEKNFFE 337
                GL+    + Y++++AN+R  Q+G++ +++   NP PW    S+ +    + + FE
Sbjct: 276 -ADIEGLDLEEFDHYIEYLANKRVRQLGMDNIYEERGNPMPWIQVFSDEMMEHTKTDQFE 334

Query: 338 TRVTEYQQGAE 348
            +  +Y    +
Sbjct: 335 NKSRDYSGATK 345


>gi|328474726|gb|EGF45531.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           parahaemolyticus 10329]
          Length = 377

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 132/341 (38%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFV 191
           +II ++  D   +F+   E   I  +A     Y   L   +       + +     +   
Sbjct: 125 HIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQTTNDYHRYGEGEHVINGETVK 184

Query: 192 FYVV---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
             +                 E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 185 ISLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLN 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++            +E +Q    +  EA   E  +A      G  +GLN   
Sbjct: 245 GTQHMINLLRNGQDDFSFMQIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
             QY+++I N R   +GL   +   T NP PW++  +    
Sbjct: 305 LSQYVEYITNIRMQAVGLPAAYPEATTNPIPWINAWLSSDN 345


>gi|123441721|ref|YP_001005705.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088682|emb|CAL11484.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 376

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 131/337 (38%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +S +V +    K+    +      +  W P E+ +  D   +   N
Sbjct: 8   QNKNNQLLEPMFFGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    +  
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVV 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLRELKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++         E  ++ +   ++    A   E  +A      G  +GLN  
Sbjct: 244 TGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKE 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL   F    NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLGIPFNTRTNPIPWINSWL 340


>gi|259907948|ref|YP_002648304.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia
           pyrifoliae Ep1/96]
 gi|224963570|emb|CAX55060.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           pyrifoliae Ep1/96]
 gi|283477829|emb|CAY73745.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           pyrifoliae DSM 12163]
 gi|310768143|gb|ADP13093.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia sp.
           Ejp617]
          Length = 376

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 135/336 (40%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLLEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I ++A     Y   L                 +    T
Sbjct: 125 HIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGEGTHQVNGKTVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
               A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++         E  ++ R   ++    A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQEKEWAEYLFSGGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R + +GL+  FK   NP PW++  +
Sbjct: 305 LCQYIEYITNIRMNAVGLDLPFKTRSNPIPWINSWL 340


>gi|91227184|ref|ZP_01261643.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           alginolyticus 12G01]
 gi|262393879|ref|YP_003285733.1| ribonucleotide reductase of class Ia (aerobic) subunit beta [Vibrio
           sp. Ex25]
 gi|269967067|ref|ZP_06181135.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           alginolyticus 40B]
 gi|91188712|gb|EAS75000.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           alginolyticus 12G01]
 gi|262337473|gb|ACY51268.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
           sp. Ex25]
 gi|269828326|gb|EEZ82592.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
           alginolyticus 40B]
          Length = 377

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 133/341 (39%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +S +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QKKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFV 191
           +II ++  D   +F+   E   I  +A     Y   L   +       + +     +   
Sbjct: 125 HIIRNIVNDPAVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHVLNGETVK 184

Query: 192 FYVV---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
             +                 E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 185 VSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLN 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++            +E +Q    +  EA   E  +A      G  +GLN   
Sbjct: 245 GTQHMINLLRNGQDDFTFMQIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
             QY+++I N R   +GL   +   T NP PW++  +    
Sbjct: 305 LSQYVEYITNIRMQAVGLPAAYPEATTNPIPWINAWLSSDN 345


>gi|167623961|ref|YP_001674255.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           halifaxensis HAW-EB4]
 gi|167353983|gb|ABZ76596.1| Ribonucleoside-diphosphate reductase [Shewanella halifaxensis
           HAW-EB4]
          Length = 376

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 125/312 (40%), Gaps = 26/312 (8%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---AALPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 90  RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEEILK 149

Query: 158 KANWALQYTQTLSSPS-----------------FTTGTKDADQEFLQDLFVFYVVFEGMW 200
           +A+   +Y   L   S                     T++  +     +    V+ E + 
Sbjct: 150 RASDIAKYYDHLIKLSQAYHLLGEGSHEIDGEIIEVTTREIKKALYLCMVSVNVL-EAIR 208

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKE 256
           FY  FA   +      M G A+  + I RDE+LHLN    ++  ++   ++P +    KE
Sbjct: 209 FYVSFACSFAFAERKVMEGNAKIIRLIARDEALHLNSTQHILKIMQGGKDDPEMAEIAKE 268

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
            +Q +  +  +A   E  +A      G  +GLN     QY+++I N R   +     +  
Sbjct: 269 CEQTAIDIFVKAAEQEKEWAKYLFKDGSMIGLNETILCQYVEYITNERMKSVNFASPYAE 328

Query: 316 TENPFPWMSEVI 327
             NP PWM   +
Sbjct: 329 QTNPLPWMKNWL 340


>gi|108798796|ref|YP_638993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. MCS]
 gi|119867913|ref|YP_937865.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. KMS]
 gi|126434397|ref|YP_001070088.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. JLS]
 gi|108769215|gb|ABG07937.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium sp. MCS]
 gi|119694002|gb|ABL91075.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium sp. KMS]
 gi|126234197|gb|ABN97597.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium sp. JLS]
          Length = 320

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 11  NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       + F 
Sbjct: 65  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY +                       V   + E   FY+GF  
Sbjct: 125 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  +  +L E
Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALQDPATQAELKDYTYELLFE 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 230 LYDNEVEYTQDLY--DSVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 319


>gi|325963521|ref|YP_004241427.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469608|gb|ADX73293.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 324

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/336 (19%), Positives = 124/336 (36%), Gaps = 34/336 (10%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++   K    W       NN W+P +VP+ +D+  W +   LT  E+ +  R  
Sbjct: 12  EAINWNRIQDDKDVDVWN---RLVNNFWLPEKVPLSNDVQSWNT---LTPAEQQLTMRVF 65

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
                 +++      +++      P         AF E+VH+ ++  I ++L   +   E
Sbjct: 66  TGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDE 125

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            F    E  ++  KA   + Y Q                       V   + E   FY+G
Sbjct: 126 AFRWSTENENLQKKAQIVMDYYQGDD---------------PLKRKVASTLLESFLFYSG 170

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +      K+   A+  + I+RDE++H  +      +          +E +  +  +
Sbjct: 171 FYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLEAVSPERRQEIKDYTFEL 230

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFP 321
           L E    E+ Y H+      VGL A   ++++ + AN+    +G E +F       NP  
Sbjct: 231 LFELYENEVQYTHDLYDG--VGL-AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAI 287

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
             +   +  +  +FF    + Y  G  +      WD
Sbjct: 288 LSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323


>gi|119961248|ref|YP_948075.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter
           aurescens TC1]
 gi|119948107|gb|ABM07018.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter
           aurescens TC1]
          Length = 324

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 122/323 (37%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    NN W+P +VP+ +D+  W +   LT DE+ +  R        
Sbjct: 15  NWNKIQDDKDVEVWNRLVNNFWLPEKVPLSNDVQSWHT---LTPDEQQLTMRVFTGLTLL 71

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++      +++      P         AF E+VH+ ++  I ++L   +   + F    
Sbjct: 72  DTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDDAFRWSL 131

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA   + Y Q                       V   + E   FY+GF   + 
Sbjct: 132 ENENLQKKAQIVMDYYQGDD---------------PLKRKVASTLLESFLFYSGFYLPMY 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E   
Sbjct: 177 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVSEARKQEIKDYTFELLFELYE 236

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+ Y H+      VGL A   ++++ + AN+    +G E +F       NP    +   
Sbjct: 237 NEVQYTHDLYDG--VGL-AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAILSALSP 293

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  + 
Sbjct: 294 NADENHDFFSGSGSSYVIGKAVN 316


>gi|254489413|ref|ZP_05102616.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp.
           GAI101]
 gi|214041920|gb|EEB82560.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp.
           GAI101]
          Length = 324

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W +   L  DER +  R L   
Sbjct: 15  NWNRIQDDKDLEVWN---RLTVNFWLPEKVPLSNDVQSWAT---LKPDERTLTIRVLTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       ++      P     L   AF EAVH+ ++  I ++L   +   + F 
Sbjct: 69  TLLDTIQNTVGAPSLMPDAQTPHEEAVLTNIAFMEAVHARSYSSIFSTLCSTKEVDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P + AK+   LQ     + P                  +  V  E   FY+GF  
Sbjct: 129 WSEDNPHLQAKSRLILQEYNATADP--------------LKRKIASVFLESFLFYSGFYL 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   + P       +  + +++ +
Sbjct: 175 PMYWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQRATEQLPQADRDALKDFAFSLMFD 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
              +E  Y  E      +GL     + ++ + AN+    +G E LF       NP   ++
Sbjct: 235 LYEIEAHYTAELYDD--LGLT-EDVKAFLHYNANKALQNLGYEALFPAQVCEVNP-AILA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
            +    +  +FF    + Y  G  +      WD
Sbjct: 291 ALSPDSENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|294505968|ref|YP_003570026.1| Ribonucleoside-diphosphate reductase beta subunit [Salinibacter
           ruber M8]
 gi|294342296|emb|CBH23074.1| Ribonucleoside-diphosphate reductase beta subunit [Salinibacter
           ruber M8]
          Length = 324

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 131/323 (40%), Gaps = 18/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P +Y    E   +   ++W+  E   + D+  ++     TD ER +IK+ +   A
Sbjct: 7   RVNLKPYEYPHLLEFKTAIRQSYWVHDEFSFEGDVQDFR--VNCTDAERSVIKKTMLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E          IY  L  PE     +  A  E  H   + +++  LGL++   F    
Sbjct: 65  QVEV-AVKTFWADIYDRLPVPEVGAVGMTFAESEVRHLDAYSHLLELLGLND--AFERIE 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+P++  +  +         + +        ++ F   + +F +  E +  ++ F  +LS
Sbjct: 122 EIPALIDRVEY--------LNSALEGTGSRDERAFAHSILLFSIFIEHVSLFSQFLIMLS 173

Query: 211 LGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  K   G+A   +   ++E +H  FG++++N I+ E+P  +   F+Q+ R    EA 
Sbjct: 174 FDKHEKRFKGVANAVEATSKEEQIHGLFGVELMNIIREEHPEWFGPAFEQEVRAACEEAY 233

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
             E          G +  L  P  + +++   N     + ++P+F+          W  E
Sbjct: 234 DAEQKVLDWIFADGELDFLPRPVVDAFLRDKFNESLKNVDVDPIFEVDPEHLGETRWFYE 293

Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
            I L K  +FF  R T Y +  +
Sbjct: 294 EILLTKGNDFFSKRSTSYSKMTQ 316


>gi|33152746|ref|NP_874099.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           ducreyi 35000HP]
 gi|33148970|gb|AAP96488.1| ribonucleoside-diphosphate reductase, beta chain [Haemophilus
           ducreyi 35000HP]
          Length = 376

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 125/336 (37%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A    +S PE   ++    F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG--------------- 177
           +II ++  D   +F+       I  +A     Y   L   S                   
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRARDISCYYDDLIRDSQLYTLYGEGTYQVDGKACA 184

Query: 178 -TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            T    +  L    +   V E + FY  FA   +      M G A+  ++I RDE LHL 
Sbjct: 185 VTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLHLA 244

Query: 237 FGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N I              E QQ++  +   A   E  +A      G  +GLN   
Sbjct: 245 GTQQMLNIIASGQDDPEMAEIAIECQQEAYDLFVAAAEQEKEWAEYLFKDGSMIGLNKEI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             +Y+++I N R   +GL   F    NP PW++  +
Sbjct: 305 LVKYVEYITNIRMQSVGLPLPFATQSNPIPWINAWL 340


>gi|222475861|ref|YP_002564382.1| ribonucleotide reductase [Halorubrum lacusprofundi ATCC 49239]
 gi|222454232|gb|ACM58496.1| ribonucleotide reductase [Halorubrum lacusprofundi ATCC 49239]
          Length = 336

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 133/323 (41%), Gaps = 18/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
             QL P +Y    +   +  N++W+ TE     D+  +K     T  E+ +IKR +   A
Sbjct: 19  RTQLKPYEYNDFLDYKDAIRNSYWVHTEFNFSGDVQDFKVNT--TPAEKTVIKRTMLAIA 76

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E          IY  +   E     +  A  E  H   + +++  LG+     F    
Sbjct: 77  QIEV-QVKTFWSDIYEEMPKAEIGSVGMTFAESEVRHMDAYSHLLDVLGITGD--FEEVT 133

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           EVP++  +  +               G  D  + ++  + +F +  E +  ++ F  + S
Sbjct: 134 EVPAVKDRIEY--------LDECLERGQSDDTKGYVMSILLFSMFVEHVSLFSQFLIMTS 185

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +   K  GIA   +   ++E +H  FG+++++ I+ ENP L+  EF+ + R     A 
Sbjct: 186 FDKYEKKFKGIANAVEATSKEEQIHGLFGVELVDTIREENPGLFDDEFEAEIREACRRAY 245

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E+        +G +  L      ++++   N+    +G+ P+F+  ++      W  E
Sbjct: 246 EAEMGMLDWIFGEGELQFLPREYVNEFLKDRFNQSLENVGVYPMFETDDDLLDETRWFDE 305

Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
            I + K+ +FF  R T Y +  +
Sbjct: 306 DIMMTKDNDFFSKRSTTYNKHTQ 328


>gi|170726650|ref|YP_001760676.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           woodyi ATCC 51908]
 gi|169811997|gb|ACA86581.1| Ribonucleoside-diphosphate reductase [Shewanella woodyi ATCC 51908]
          Length = 376

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 127/311 (40%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L D E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEVDVSKDKIDY---AALPDHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +F+   E   I  
Sbjct: 90  RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEEILK 149

Query: 158 KANWALQYTQTLS----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
           +A+   +Y  TL                        TK   ++ L    +   V E + F
Sbjct: 150 RASDIAEYYDTLIKLTQAFHLLGEGTHMIDGRELIVTKREIKKALYLCMMSVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHLN    +I   Q   ++P +    KE 
Sbjct: 210 YVSFACSFAFAERKVMEGNAKIIRLIARDEALHLNSTQHIIKLMQAGKDDPEMGEIAKEC 269

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           +Q++  +  +A   E  +A      G  +GLN     QY+++I N R   + L+  +   
Sbjct: 270 EQQAYDIFVKAAEQEKEWARYLFKDGSMIGLNEQILCQYVEYITNERMKSVNLDLPYAQI 329

Query: 317 ENPFPWMSEVI 327
            NP PWM   +
Sbjct: 330 TNPLPWMKTWL 340


>gi|28898709|ref|NP_798314.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839553|ref|ZP_01992220.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|260363692|ref|ZP_05776476.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus K5030]
 gi|260879741|ref|ZP_05892096.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|260898785|ref|ZP_05907226.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|260901598|ref|ZP_05909993.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|28806927|dbj|BAC60198.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149746934|gb|EDM57922.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|308086689|gb|EFO36384.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308093260|gb|EFO42955.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|308108691|gb|EFO46231.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|308113401|gb|EFO50941.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus K5030]
          Length = 377

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/342 (21%), Positives = 134/342 (39%), Gaps = 28/342 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
           +II ++  D   +F+   E   I  +A     Y                    L+  +  
Sbjct: 125 HIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQTTNDYHRYGEGEHVLNGETVK 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
               D  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VSLYDLKKKLYICLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
           N    +IN ++            +E +Q    +  EA   E  +A      G  +GLN  
Sbjct: 244 NGTQHMINLLRNGQDDFSFMQIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
              QY+++I N R   +GL   +   T NP PW++  +    
Sbjct: 304 ILSQYVEYITNIRMQAVGLPAAYPEATTNPIPWINAWLSSDN 345


>gi|212712302|ref|ZP_03320430.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM
           30120]
 gi|212685048|gb|EEB44576.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM
           30120]
          Length = 380

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 134/336 (39%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ N   + M   +  +V +    KY    +      +  W P EV +  D   +   N
Sbjct: 12  QKKNNQLLEPMFFGQPVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVARDRIDY---N 68

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 69  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYT 128

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQEFL----- 186
           +II ++  D   +F+   E   I  +A     Y  TL    ++     +    F      
Sbjct: 129 HIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTLIEMTNYYHMFGEGTHTFEGKEIT 188

Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                         +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 189 VSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 248

Query: 237 FGIDVIN--QIKIENPHLWTKEFQQKS--RTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N  +   ++P +     + +     +  +A   E  +A     +G  +GLN   
Sbjct: 249 GTQHMLNLLRSGQDDPEMAEIAAECEEECYRLFVDAAEQEKEWAEYLFSEGSMIGLNKDI 308

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 309 LCQYVEYITNIRMQAVGLKLPFEARSNPIPWINAWL 344


>gi|312962626|ref|ZP_07777115.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           fluorescens WH6]
 gi|311283001|gb|EFQ61593.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
           fluorescens WH6]
          Length = 136

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 88/136 (64%), Positives = 108/136 (79%)

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           M G+AEQ+QYI+RDES+HLNFGIDVINQIKIENPHLW  E ++++  M+ + T LEI YA
Sbjct: 1   MTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYA 60

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336
            +TMP+G +G+NA   E Y++FIANRR  QIGL+  +  T NPFPWMSE++DLKKEKNFF
Sbjct: 61  RDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFF 120

Query: 337 ETRVTEYQQGAELKWD 352
           ETRV EYQ G  L WD
Sbjct: 121 ETRVIEYQTGGALSWD 136


>gi|126174279|ref|YP_001050428.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           baltica OS155]
 gi|125997484|gb|ABN61559.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella baltica OS155]
          Length = 376

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 131/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   +   + M   +S +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QTPNDATREPMFLGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---G 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
           +II ++  D   +F+       I ++A     Y   L   +         T   D  +  
Sbjct: 125 HIIRNIVNDPSVIFDDIVVNKEILSRATDIAAYYDHLIQLTQVFHLLGAGTHVIDGKEVI 184

Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
           +             +     E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 185 VNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLN 244

Query: 237 FGIDV--INQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +  I Q   ++P +     E QQ++  +  +A   E  +A      G  +GLN   
Sbjct: 245 STQHILSIMQGGKDDPEMGEIAAECQQEAFDLFFKAAEQEKEWAKYLFKDGSMIGLNEQI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY++FI N+R   + L   +    NP PWM   +
Sbjct: 305 LCQYVEFITNQRMKSVNLPQPYLEITNPLPWMKNWL 340


>gi|238797463|ref|ZP_04640962.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           mollaretii ATCC 43969]
 gi|238718734|gb|EEQ10551.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           mollaretii ATCC 43969]
          Length = 376

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/337 (20%), Positives = 130/337 (38%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +  +V +    K+    +      +  W P E+ +  D   +   N
Sbjct: 8   QNKNNQLLEPMFFGQCVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    +  
Sbjct: 125 HIIRNIVNDPAIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGSHQVNGKTVV 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLRELKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAP 290
                +IN ++         E  ++ +   ++    A   E  +A      G  +GLN  
Sbjct: 244 TGTQHIINLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKE 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL   F    NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLGVPFNTRTNPIPWINSWL 340


>gi|47213107|emb|CAF89527.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 369

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 6/149 (4%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        + P++Y   W+ Y  A  + W   EV +  DL  W+S   L DDER 
Sbjct: 1   EEPLLKENPRRFVIFPIQYQDLWQMYKKAEASFWTAEEVDLSKDLQHWES---LKDDERF 57

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +   
Sbjct: 58  FISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIK 117

Query: 141 DEGE---LFNMYREVPSITAKANWALQYT 166
           +  E   LFN    +P +  KA+WAL + 
Sbjct: 118 EPSEREYLFNAIETLPCVKKKADWALNWI 146



 Score = 61.3 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            ENPF +M E I L+ + NFFE RV EYQ+   +
Sbjct: 323 AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVM 355


>gi|76803441|ref|YP_327710.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Natronomonas
           pharaonis DSM 2160]
 gi|76559256|emb|CAI50863.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Natronomonas
           pharaonis DSM 2160]
          Length = 336

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 138/320 (43%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
             QL P +Y    +   +  N++W+ TE     D+  +++    T  E+ +IKR +   A
Sbjct: 19  RTQLKPYEYADFLDYKDAIRNSYWVHTEFNFSGDVQDFRTNT--TPAEKTVIKRTMLAIA 76

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E          IY  +   E     +  A  E  H   + +++  LG+   E F    
Sbjct: 77  QIEV-QVKTFWADIYDEMPKTEVGNVGMTFAESEVRHMDAYSHLLDILGIT--EDFEEVT 133

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +VP+I  +  +  +Y +            D  QE++  + +F    E +  ++ F  ++S
Sbjct: 134 DVPAIEDRIEYLDKYLEK--------SESDDKQEYVMSILLFSTFVEHVSLFSQFLIMMS 185

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +   K  GIA   +   ++E +H  FG++++  I+ ENP L+ ++F+++ +     A 
Sbjct: 186 FDKYKKKFKGIANAVEATSKEEQIHGLFGVELVETIREENPDLFDEDFEEEVQAACQRAF 245

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E+        +G +  L     + +++   N+    +G+EP+F+  +       W  E
Sbjct: 246 EAEMKILDWIFGEGELEFLPRTHVDAFLRDRFNQSLENVGVEPIFEPDDGLLEETRWFDE 305

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            I + K+ +FF  R T Y +
Sbjct: 306 DIMMTKDNDFFSKRSTTYNK 325


>gi|51595597|ref|YP_069788.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806924|ref|YP_650840.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Antiqua]
 gi|108812924|ref|YP_648691.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Nepal516]
 gi|145599749|ref|YP_001163825.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Pestoides F]
 gi|149366796|ref|ZP_01888830.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           CA88-4125]
 gi|153950490|ref|YP_001401734.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis IP 31758]
 gi|161484771|ref|NP_670275.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           KIM 10]
 gi|161511422|ref|NP_992302.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           biovar Microtus str. 91001]
 gi|162418296|ref|YP_001605847.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Angola]
 gi|165924721|ref|ZP_02220553.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165938305|ref|ZP_02226863.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166009974|ref|ZP_02230872.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166211802|ref|ZP_02237837.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167400353|ref|ZP_02305866.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419574|ref|ZP_02311327.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167424117|ref|ZP_02315870.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470792|ref|ZP_02335496.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           FV-1]
 gi|170025073|ref|YP_001721578.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis YPIII]
 gi|186894660|ref|YP_001871772.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928372|ref|YP_002346247.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           CO92]
 gi|229841157|ref|ZP_04461316.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229843262|ref|ZP_04463408.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229894122|ref|ZP_04509308.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           Pestoides A]
 gi|229903354|ref|ZP_04518467.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           Nepal516]
 gi|270487164|ref|ZP_06204238.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           KIM D27]
 gi|294503227|ref|YP_003567289.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           Z176003]
 gi|51588879|emb|CAH20493.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776572|gb|ABG19091.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Yersinia pestis Nepal516]
 gi|108778837|gb|ABG12895.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Yersinia pestis Antiqua]
 gi|115346983|emb|CAL19874.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           CO92]
 gi|145211445|gb|ABP40852.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Yersinia pestis Pestoides F]
 gi|149291170|gb|EDM41245.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           CA88-4125]
 gi|152961985|gb|ABS49446.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351111|gb|ABX85059.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           Angola]
 gi|165913683|gb|EDR32302.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165923781|gb|EDR40913.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165991370|gb|EDR43671.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166207573|gb|EDR52053.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962315|gb|EDR58336.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167050302|gb|EDR61710.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167056966|gb|EDR66729.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169751607|gb|ACA69125.1| Ribonucleoside-diphosphate reductase [Yersinia pseudotuberculosis
           YPIII]
 gi|186697686|gb|ACC88315.1| ribonucleotide reductase [Yersinia pseudotuberculosis PB1/+]
 gi|229679124|gb|EEO75227.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           Nepal516]
 gi|229689609|gb|EEO81670.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229697523|gb|EEO87570.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229704007|gb|EEO91020.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           Pestoides A]
 gi|262361266|gb|ACY57987.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           D106004]
 gi|262365197|gb|ACY61754.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           D182038]
 gi|270335668|gb|EFA46445.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           KIM D27]
 gi|294353686|gb|ADE64027.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           Z176003]
 gi|320015945|gb|ADV99516.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 376

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 132/337 (39%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +S +V +    K+    +      +  W P E+ +  D   +   N
Sbjct: 8   QNKNNQLLEPMFFGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    +  
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVV 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              +D  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VKLRDLKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAP 290
                ++N +++        E  ++ +   ++    A   E  +A      G  +GLN  
Sbjct: 244 TGTQHILNLMRLGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKE 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL   F    NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLGIPFSTRTNPIPWINSWL 340


>gi|312140539|ref|YP_004007875.1| ribonucleoside-diphosphate reductase nrdf [Rhodococcus equi 103S]
 gi|311889878|emb|CBH49195.1| ribonucleoside-diphosphate reductase NrdF [Rhodococcus equi 103S]
          Length = 329

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 125/330 (37%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT +E+ +  R     
Sbjct: 20  NWNRVPDEKDSEVWD---RLTGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       + F 
Sbjct: 74  TLLDTIQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   L Y +                       V   + E   FY+GF  
Sbjct: 134 WSEENPNLQRKAQIVLDYYKGDD---------------PLKRKVASTLLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 179 PMYWASRAKLTNTADVIRLIIRDEAVHGYYIGYKYQRGLERVTEAEREELKNYTFELLFE 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 239 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 295

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +    + D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAVNTEDD 325


>gi|238751211|ref|ZP_04612705.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           rohdei ATCC 43380]
 gi|238710485|gb|EEQ02709.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           rohdei ATCC 43380]
          Length = 399

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 130/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +S +V +    K+    +      +  W P E+ +  D   ++   
Sbjct: 31  QNKNNQLLEPMFLGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDYQ--- 87

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 88  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 147

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y   L                 +     
Sbjct: 148 HIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVV 207

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
               A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 208 VNLHALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLT 267

Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++         E     QQ+   +   A   E  +A      G  +GLN   
Sbjct: 268 GTQHILNLMRSGEDDPEMAEIAVECQQQCYDLFVLAAEQEKEWAEYLFRDGSMIGLNKEI 327

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   FK   NP PW++  +
Sbjct: 328 LCQYVEYITNIRMQAVGLGTPFKTRTNPIPWINSWL 363


>gi|27366311|ref|NP_761839.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           vulnificus CMCP6]
 gi|37679427|ref|NP_934036.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
           vulnificus YJ016]
 gi|320156821|ref|YP_004189200.1| ribonucleotide reductase of class Ia (aerobic), subunit beta
           [Vibrio vulnificus MO6-24/O]
 gi|27362512|gb|AAO11366.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Vibrio vulnificus CMCP6]
 gi|37198171|dbj|BAC94007.1| ribonucleotide reductase, beta subunit [Vibrio vulnificus YJ016]
 gi|319932133|gb|ADV86997.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Vibrio vulnificus MO6-24/O]
          Length = 377

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/344 (21%), Positives = 132/344 (38%), Gaps = 27/344 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
               K   + +   L    +V +    K+    +      +  W P EV +  D   +  
Sbjct: 6   FNQTKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS +
Sbjct: 64  -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-----------------SSPS 173
           + +II ++  D   +F+   E   I  +A     Y   L                 +  +
Sbjct: 123 YTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQLTNDYHRFGEGEHVVNGET 182

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                 +  ++    L     + E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 183 IKVSLYELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEAL 241

Query: 234 HLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HLN    +IN ++            +E +Q+   +  EA   E  +A      G  +GLN
Sbjct: 242 HLNGTQHMINLLRNGQDDFSFMQIAEEAKQQCFDLFKEAAEQEKEWAEYLFKDGSMIGLN 301

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK 331
                QY+++I N R   +GL   +   T NP PW++  +    
Sbjct: 302 KDILCQYVEYITNIRMQAVGLPVAYPNATSNPIPWINAWLSSDN 345


>gi|238785708|ref|ZP_04629683.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           bercovieri ATCC 43970]
 gi|238713393|gb|EEQ05430.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           bercovieri ATCC 43970]
          Length = 376

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 131/337 (38%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +  +V +    K+    +      +  W P E+ +  D   +   N
Sbjct: 8   QNKNNQLLEPMFFGQCVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    +  
Sbjct: 125 HIIRNIVNDPAIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGSHQVNGKTVV 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L     + E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VNLRELKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAP 290
                ++N ++         E  ++ ++  ++    A   E  +A      G  +GLN  
Sbjct: 244 TGTQHILNLMRSGEDDPEMAEIAEECQSQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKE 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +GL   F    NP PW++  +
Sbjct: 304 ILCQYVEYITNIRMQAVGLGVPFNTRSNPIPWINSWL 340


>gi|163842202|ref|YP_001626607.1| ribonucleotide-diphosphate reductase subunit beta [Renibacterium
           salmoninarum ATCC 33209]
 gi|162955678|gb|ABY25193.1| ribonucleoside-diphosphate reductase beta chain [Renibacterium
           salmoninarum ATCC 33209]
          Length = 325

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 124/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    NN W+P +VP+ +D+  W +   LT DE+ +  R        
Sbjct: 16  NWNRIQDDKDVEVWNRLVNNFWLPEKVPLSNDVQSWAT---LTPDEQQLTMRVFTGLTLL 72

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           ++L      +++      P         AF E+VH+ ++  I ++L   +   E F    
Sbjct: 73  DTLQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSV 132

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA   + Y                         V   + E   FY+GF   + 
Sbjct: 133 ENENLQKKAQIVMNYYTGDD---------------PLKRKVASTLLESFLFYSGFYLPMY 177

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      +E +  +  +L+E   
Sbjct: 178 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVSEERREEIKAYTFDLLYELYE 237

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            EI Y H+      VGL A   ++++ + AN+    +G E +F       NP    +   
Sbjct: 238 NEIQYTHDLY--DAVGL-AEDVKKFLHYNANKALMNLGYEAMFPSTVTDVNPAILSALSP 294

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 295 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 324


>gi|289178104|gb|ADC85350.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium
           animalis subsp. lactis BB-12]
          Length = 326

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 121/328 (36%), Gaps = 29/328 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W+    ++D E  +  R     
Sbjct: 17  NWNRLDDEKDLEVWD---RLTGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       E F+
Sbjct: 71  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEAFD 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  KA   L Y +                       V   + E   FY+GF  
Sbjct: 131 WSEKNPHLQRKAQIVLDYYEGDD---------------PLKRKVASTLLESFLFYSGFYL 175

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  +  +L+E
Sbjct: 176 PMYFSSHAKLTNTADVIRLIIRDEAVHGYYIGYKYQKGLEMASDAKRAEMETYTYDLLNE 235

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
               E+ Y H       VGL+    E+++ + AN+    +G   LF       NP    +
Sbjct: 236 LYENEVEYTHSLY--DEVGLS-DDVEKFLHYNANKALMNLGYPALFPSEICDVNPAILAA 292

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352
              +  +  +FF    + Y  G   + D
Sbjct: 293 LSPNADENHDFFSGSGSSYVMGRAEETD 320


>gi|127512873|ref|YP_001094070.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           loihica PV-4]
 gi|126638168|gb|ABO23811.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Shewanella loihica PV-4]
          Length = 376

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 124/330 (37%), Gaps = 29/330 (8%)

Query: 22  KRMLNA---RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + M            +   KY    +      +  W P EV +  D   +     L D E
Sbjct: 16  EPMFLGQSVNVARYDIQ--KYEVFEKLIEKQLSFFWRPEEVDVSKDKIDY---AALPDHE 70

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           + +   NL +    +S+   +  +A    +S PE   ++   +F E +HS ++ +II ++
Sbjct: 71  KHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNI 130

Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFL----------- 186
             D   +F+   +   I  +A+    Y   L   S       +   E             
Sbjct: 131 VNDPSVVFDDIVQNEEILKRASDIADYYDNLIELSQIYHLMGEGTHEINGKTVEVTTRAI 190

Query: 187 ----QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
                   +   V E + FY  FA   +      M G A+  + I RDE+LHLN    ++
Sbjct: 191 KKALYLCMMSVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHIL 250

Query: 243 N--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQ 297
              Q   ++P +    KE +Q +  +  +A   E  +A      G  +GLN     QY++
Sbjct: 251 KLMQGGKDDPEMAEIAKECEQTAIDIFVKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVE 310

Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           +I N R   + L   +    NP PWM   +
Sbjct: 311 YITNERMKSVNLVSPYADQSNPLPWMKNWL 340


>gi|320095222|ref|ZP_08026924.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319977850|gb|EFW09491.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 319

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 124/336 (36%), Gaps = 34/336 (10%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++   K    W+       N W+P +VP+ +DL  W++   L  DE+ M  R  
Sbjct: 7   EAINWNRIQDDKDLEVWD---RLTGNFWLPEKVPLSNDLPSWQT---LNKDEQTMTNRVF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
                 ++L      +++      P         AF E+VH+ ++  I ++L   E   E
Sbjct: 61  TGLTLLDTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINE 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            F    E  ++  KA     Y     +                       + E   FY+G
Sbjct: 121 SFRWSNENEALQRKAQIIKSYYDGDDAEKRKV---------------ASTMLESFLFYSG 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +      K+   A+  + I+RDE++H  +          E+      + +  + ++
Sbjct: 166 FYAPMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVGESTQERRDDLKDYTYSL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFP 321
           L+E    E  Y  +      +GL     ++++++ AN+    +G E LF +     NP  
Sbjct: 226 LYELYENEEQYTEDLY--DPLGLT-EDVKKFLRYNANKALMNLGYEALFPHDATDVNPAI 282

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
             +   +  +  +FF    + Y  G  +      WD
Sbjct: 283 LAALSPNADENHDFFSGSGSSYVMGEVVDTEDEDWD 318


>gi|157371509|ref|YP_001479498.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
           proteamaculans 568]
 gi|157323273|gb|ABV42370.1| Ribonucleoside-diphosphate reductase [Serratia proteamaculans 568]
          Length = 376

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 135/336 (40%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +S +V +    K+    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNNQLLEPMFFGQSVNVARFDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y   L                 +    T
Sbjct: 125 HIIRNIVNDPAIVFDDIVTNEEILKRAKDISGYYDDLIEMTGYYHLLGEGTHQVNGKTVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
            T  A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VTLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++   ++P +     E QQ+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAEQEKEWAEYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F    NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLGLPFATRSNPIPWINAWL 340


>gi|315605404|ref|ZP_07880447.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
           oral taxon 180 str. F0310]
 gi|315312973|gb|EFU61047.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
           oral taxon 180 str. F0310]
          Length = 329

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 129/347 (37%), Gaps = 38/347 (10%)

Query: 20  DDKRM----LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
            ++ M    +    + N++   K    W+       N W+P +VP+ +DL  WK+   LT
Sbjct: 6   QEEPMAIEPVFEAINWNKIQDEKDLEVWD---RLTGNFWLPEKVPLSNDLPSWKT---LT 59

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             E+LM  R        ++L      +++      P         AF E+VH+ ++  I 
Sbjct: 60  KGEQLMTNRVFTGLTLLDTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIF 119

Query: 136 TSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           ++L   E   E F    E  ++  KA     Y     +                      
Sbjct: 120 STLLSTEEINESFRWSNENAALQKKAEIIKSYYDGDDAEKRKV---------------AS 164

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + E   FY+GF   +      K+   A+  + I+RDE++H  +          E+    
Sbjct: 165 TMLESFLFYSGFYAPMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVNESSQER 224

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             + +  + ++L+E    E  Y  +      +GL     ++++++ AN+    +G E LF
Sbjct: 225 QDDLRDYTYSLLYELYENEEQYTEDLY--DPLGLT-EDVKKFLRYNANKALMNLGYEALF 281

Query: 314 KYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
            +     NP    +   +  +  +FF    + Y  G  +      WD
Sbjct: 282 PHDATNVNPAILAALSPNADENHDFFSGSGSSYVMGEVVDTEDEDWD 328


>gi|183601891|ref|ZP_02963260.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682805|ref|YP_002469188.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190381|ref|YP_002967775.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241195787|ref|YP_002969342.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218776|gb|EDT89418.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620455|gb|ACL28612.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240248773|gb|ACS45713.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250341|gb|ACS47280.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793368|gb|ADG32903.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 321

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 121/328 (36%), Gaps = 29/328 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W+    ++D E  +  R     
Sbjct: 12  NWNRLDDEKDLEVWD---RLTGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGL 65

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       E F+
Sbjct: 66  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEAFD 125

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  KA   L Y +                       V   + E   FY+GF  
Sbjct: 126 WSEKNPHLQRKAQIVLDYYEGDD---------------PLKRKVASTLLESFLFYSGFYL 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  +  +L+E
Sbjct: 171 PMYFSSHAKLTNTADVIRLIIRDEAVHGYYIGYKYQKGLEMASDAKRAEMETYTYDLLNE 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
               E+ Y H       VGL+    E+++ + AN+    +G   LF       NP    +
Sbjct: 231 LYENEVEYTHSLY--DEVGLS-DDVEKFLHYNANKALMNLGYPALFPSEICDVNPAILAA 287

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352
              +  +  +FF    + Y  G   + D
Sbjct: 288 LSPNADENHDFFSGSGSSYVMGRAEETD 315


>gi|238753722|ref|ZP_04615083.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           ruckeri ATCC 29473]
 gi|238707958|gb|EEQ00315.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           ruckeri ATCC 29473]
          Length = 376

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +  +V +    K+    +      +  W P E+ +  D   +   N
Sbjct: 8   QNKNNQLLEPMFLGQPVNVARFDQQKFAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y   L                 +     
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEEILKRAKDISSYYDDLIEMTSYYHLLGEGNHQVNGKTVV 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
               A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLHALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++         E     QQ+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNLMRSGEDDPEMAEIAVECQQQCYDLFVLAAEQEKEWAEYLFRDGSMIGLNKEI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   FK   NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLGTPFKTRTNPIPWINAWL 340


>gi|226305840|ref|YP_002765800.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus
           erythropolis PR4]
 gi|229493405|ref|ZP_04387194.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
           erythropolis SK121]
 gi|226184957|dbj|BAH33061.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus
           erythropolis PR4]
 gi|229319721|gb|EEN85553.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
           erythropolis SK121]
          Length = 321

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 126/330 (38%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+      +N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 12  NWNRVQDEKDAEVWD---RLVSNFWLPEKVPVSNDIPSWGT---LTAQEQQLTMRVFTGL 65

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       + F 
Sbjct: 66  TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTPDIDDAFR 125

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   L Y    S                    V   + E   FY+GF  
Sbjct: 126 WSEENPNLQRKAQIVLDYYNGES---------------PLKRKVASTLLESFLFYSGFYL 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 171 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEQLTEAEREELKNYTFELLFE 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+  + +G E LF   E   NP    +
Sbjct: 231 LYENEVDYTQDLYDG--VGLT-EDVKKFLRYNANKALNNLGYEGLFPKDETDVNPAILSA 287

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +    + D
Sbjct: 288 LSPNADENHDFFSGSGSSYVIGKAVNTEDD 317


>gi|15842613|ref|NP_337650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis CDC1551]
 gi|31794226|ref|NP_856719.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           bovis AF2122/97]
 gi|57117051|ref|YP_177921.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Rv]
 gi|121638932|ref|YP_979156.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148662901|ref|YP_001284424.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|148824239|ref|YP_001288993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis F11]
 gi|167969649|ref|ZP_02551926.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|215405040|ref|ZP_03417221.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|215412903|ref|ZP_03421607.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215428496|ref|ZP_03426415.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T92]
 gi|215432000|ref|ZP_03429919.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|215447324|ref|ZP_03434076.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|218754813|ref|ZP_03533609.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis GM 1503]
 gi|219559083|ref|ZP_03538159.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T17]
 gi|224991424|ref|YP_002646113.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253797854|ref|YP_003030855.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis KZN 1435]
 gi|254233678|ref|ZP_04927003.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis C]
 gi|254365678|ref|ZP_04981723.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254552123|ref|ZP_05142570.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260188080|ref|ZP_05765554.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis CPHL_A]
 gi|260202186|ref|ZP_05769677.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis T46]
 gi|260206381|ref|ZP_05773872.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis K85]
 gi|289444611|ref|ZP_06434355.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           tuberculosis T46]
 gi|289448726|ref|ZP_06438470.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis CPHL_A]
 gi|289553161|ref|ZP_06442371.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis KZN 605]
 gi|289571250|ref|ZP_06451477.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis T17]
 gi|289575758|ref|ZP_06455985.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis K85]
 gi|289746856|ref|ZP_06506234.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289751720|ref|ZP_06511098.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis T92]
 gi|289755164|ref|ZP_06514542.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289759173|ref|ZP_06518551.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|289763226|ref|ZP_06522604.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis GM 1503]
 gi|294993448|ref|ZP_06799139.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 210]
 gi|297635679|ref|ZP_06953459.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732677|ref|ZP_06961795.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN R506]
 gi|298526518|ref|ZP_07013927.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306777354|ref|ZP_07415691.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu001]
 gi|306781258|ref|ZP_07419595.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu002]
 gi|306785899|ref|ZP_07424221.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu003]
 gi|306790253|ref|ZP_07428575.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu004]
 gi|306794748|ref|ZP_07433050.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu005]
 gi|306798990|ref|ZP_07437292.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu006]
 gi|306804833|ref|ZP_07441501.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu008]
 gi|306809026|ref|ZP_07445694.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu007]
 gi|306969126|ref|ZP_07481787.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu009]
 gi|306973470|ref|ZP_07486131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu010]
 gi|307081181|ref|ZP_07490351.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu011]
 gi|307085780|ref|ZP_07494893.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu012]
 gi|313660009|ref|ZP_07816889.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN V2475]
 gi|81671996|sp|Q50549|RIR2B_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta
           nrdF2; AltName: Full=Ribonucleoside-diphosphate
           reductase nrdF2; AltName: Full=Ribonucleotide reductase
           R2-2 small subunit
 gi|1395209|gb|AAB81406.1| ribonucleotide reductase R2-2 small subunit [Mycobacterium
           tuberculosis]
 gi|13882928|gb|AAK47464.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Mycobacterium tuberculosis CDC1551]
 gi|31619821|emb|CAD96761.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
           [Mycobacterium bovis AF2122/97]
 gi|41352780|emb|CAE55544.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
           [Mycobacterium tuberculosis H37Rv]
 gi|121494580|emb|CAL73061.1| Ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124599207|gb|EAY58311.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis C]
 gi|134151191|gb|EBA43236.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148507053|gb|ABQ74862.1| ribonucleoside-diphosphate reductase subunit beta NrdF2
           [Mycobacterium tuberculosis H37Ra]
 gi|148722766|gb|ABR07391.1| ribonucleoside-diphosphate reductase beta subunit nrdF2
           [Mycobacterium tuberculosis F11]
 gi|224774539|dbj|BAH27345.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253319357|gb|ACT23960.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis KZN 1435]
 gi|289417530|gb|EFD14770.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           tuberculosis T46]
 gi|289421684|gb|EFD18885.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis CPHL_A]
 gi|289437793|gb|EFD20286.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis KZN 605]
 gi|289540189|gb|EFD44767.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis K85]
 gi|289545004|gb|EFD48652.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis T17]
 gi|289687384|gb|EFD54872.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289692307|gb|EFD59736.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis T92]
 gi|289695751|gb|EFD63180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289710732|gb|EFD74748.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
           [Mycobacterium tuberculosis GM 1503]
 gi|289714737|gb|EFD78749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|298496312|gb|EFI31606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308214246|gb|EFO73645.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu001]
 gi|308325901|gb|EFP14752.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu002]
 gi|308329423|gb|EFP18274.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu003]
 gi|308333268|gb|EFP22119.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu004]
 gi|308336923|gb|EFP25774.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu005]
 gi|308340739|gb|EFP29590.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu006]
 gi|308344606|gb|EFP33457.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu007]
 gi|308348554|gb|EFP37405.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu008]
 gi|308353280|gb|EFP42131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu009]
 gi|308357113|gb|EFP45964.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu010]
 gi|308361065|gb|EFP49916.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu011]
 gi|308364701|gb|EFP53552.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis SUMu012]
 gi|323718280|gb|EGB27458.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis CDC1551A]
 gi|326902729|gb|EGE49662.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis W-148]
 gi|328457631|gb|AEB03054.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Mycobacterium tuberculosis KZN 4207]
          Length = 324

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 124/330 (37%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       + F 
Sbjct: 69  TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   LQY +                       V   + E   FY+GF  
Sbjct: 129 WSEENRNLQRKAEIVLQYYRGDE---------------PLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +       +   E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +    + D
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDD 320


>gi|237747538|ref|ZP_04578018.1| ribonucleotide-diphosphate reductase subunit beta [Oxalobacter
           formigenes OXCC13]
 gi|229378900|gb|EEO28991.1| ribonucleotide-diphosphate reductase subunit beta [Oxalobacter
           formigenes OXCC13]
          Length = 376

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 130/337 (38%), Gaps = 27/337 (8%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +  +V +    K+    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNNQLLEPMFFGQPVNVARYDQQKHEVFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+      +I  +A     Y   L                    +  
Sbjct: 125 HIIRNIVNDPAIVFDDIVSNENIVRRATDISVYYDDLIEMTGYYHLLGEGTHQVNGKTVN 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
               +  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LHL
Sbjct: 185 VSLYELKKKLYMCLMSVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAHETMPKG-FVGLNAP 290
                ++N +          E  ++ R     +   A   E  +A      G  +GLN  
Sbjct: 244 TGTQHMLNLMGSGEDDPDMAEIAKECREQSIDLFVRAAEQEKEWADYLFRDGSMIGLNRD 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              QY+++I N R   +G+   F+   NP PW++  +
Sbjct: 304 ILCQYVEYITNTRMQAVGMPLPFEIRSNPIPWINAWL 340


>gi|330004285|ref|ZP_08304843.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
 gi|328536657|gb|EGF62979.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
          Length = 380

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 125/336 (37%), Gaps = 30/336 (8%)

Query: 18  NVDDKRMLNARS---DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           +   + M    S       +   KY    +      +  W P EV +  D   + +   L
Sbjct: 12  DATKEPMFLGNSVNVSRYDIQ--KYREFEKLIEKQLSFFWRPEEVDISQDRIDYMT--KL 67

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
            D ER +   NL +    +S+   +  + +    S PE   ++   AF E +HS ++ +I
Sbjct: 68  ADHERHIFNSNLRYQTLLDSVQGRSPNVTLLPLASIPELETWIETWAFSETIHSRSYTHI 127

Query: 135 ITSLGLDEGELFNMYREVP----------SITAKANWALQYTQTLSSPSFT-------TG 177
           I  +  D  E+F+                +   K    +   + L    F         G
Sbjct: 128 IRGMVDDPSEIFDGIVTDEQIISRASSVSAEYDKLYQMVCAREHLGEDEFERLYASEFDG 187

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                Q  L    V     E + FY  FA   + G    + G A+  + I RDE+LH   
Sbjct: 188 KPYPMQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKLLEGNAKIMRLIARDEALHCEG 247

Query: 238 GIDVINQIKIENPHLWTKEFQQKS----RTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
              ++  ++     L  K+  ++        + +    E+ +A      G  +GLNA   
Sbjct: 248 TERMLRNMRNGREGLLWKQIAEEEEPFVYQTMLDVAEQEMRWADYLFKDGSMIGLNAKIL 307

Query: 293 EQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVI 327
           +QY+++  N    ++ L PLF   T +P PWM+  +
Sbjct: 308 KQYVKYRTNLAMKRLHLNPLFDDVTFDPLPWMNSWL 343


>gi|315445193|ref|YP_004078072.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium sp. Spyr1]
 gi|315263496|gb|ADU00238.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium sp. Spyr1]
          Length = 320

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 11  NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       + F 
Sbjct: 65  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTSEIDDAFR 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY +                       V   + E   FY+GF  
Sbjct: 125 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALADDATRQELKDYTYELLFE 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 230 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 319


>gi|292488819|ref|YP_003531706.1| ribonucleoside-diphosphate reductase 1 subunit beta [Erwinia
           amylovora CFBP1430]
 gi|292899970|ref|YP_003539339.1| ribonucleoside-diphosphate reductase 1 subunit beta [Erwinia
           amylovora ATCC 49946]
 gi|291199818|emb|CBJ46941.1| ribonucleoside-diphosphate reductase 1 beta subunit [Erwinia
           amylovora ATCC 49946]
 gi|291554253|emb|CBA21550.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           amylovora CFBP1430]
 gi|312172977|emb|CBX81232.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
           amylovora ATCC BAA-2158]
          Length = 376

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 135/336 (40%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +S +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNNQLLEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I ++A     Y   L                 +    T
Sbjct: 125 HIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGEGTHQVNGKTVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
               A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++         E  ++ R   ++    A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQEKEWAEYLFSGGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R + +GL+  FK   NP PW++  +
Sbjct: 305 LWQYIEYITNIRMNAVGLDLPFKTRSNPIPWINSWL 340


>gi|120403054|ref|YP_952883.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955872|gb|ABM12877.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium vanbaalenii PYR-1]
          Length = 324

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    WE       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRLQDDKDAEVWE---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       + F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY +                       V   + E   FY+GF  
Sbjct: 129 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALESEATRQELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323


>gi|83814991|ref|YP_444284.1| ribonucleoside-diphosphate reductase, beta subunit [Salinibacter
           ruber DSM 13855]
 gi|83756385|gb|ABC44498.1| ribonucleoside-diphosphate reductase, beta subunit [Salinibacter
           ruber DSM 13855]
          Length = 324

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 131/323 (40%), Gaps = 18/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
              L P +Y    E   +   ++W+  E   + D+  ++     TD ER +IK+ +   A
Sbjct: 7   RVNLKPYEYPHLLEFKTAIRQSYWVHDEFSFEGDVQDFR--VNCTDAERSVIKKTMLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E          IY  L  PE     +  A  E  H   + +++  LGL++   F    
Sbjct: 65  QVEV-AVKTFWADIYDRLPVPEVGAVGMTFAESEVRHLDAYSHLLELLGLND--AFERIE 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+P++  +  +         + +        ++ F   + +F +  E +  ++ F  +LS
Sbjct: 122 EIPALIDRVEY--------LNSALEGTGSRDERAFAHSILLFSIFIEHVSLFSQFLIMLS 173

Query: 211 LGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  K   G+A   +   ++E +H  FG++++N I+ E+P  +   F+Q+ R    EA 
Sbjct: 174 FDKHEKRFKGVANAVEATSKEEQIHGLFGVELMNIIREEHPEWFGPAFEQEVRAACEEAY 233

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
             E          G +  L  P  + +++   N     + ++P+F+          W  E
Sbjct: 234 DAEQKVLDWIFADGELDFLPRPVVDAFLRDKFNESLKNVDVDPIFEVDPEHLGETRWFYE 293

Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
            + L K  +FF  R T Y +  +
Sbjct: 294 EVLLTKGNDFFSKRSTSYSKMTQ 316


>gi|145224865|ref|YP_001135543.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           gilvum PYR-GCK]
 gi|145217351|gb|ABP46755.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Mycobacterium gilvum PYR-GCK]
          Length = 320

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 11  NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       + F 
Sbjct: 65  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTSEIDDAFR 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY +                       V   + E   FY+GF  
Sbjct: 125 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALADDATRQELKDYTYELLFE 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 230 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVITEDEDWD 319


>gi|269963956|ref|ZP_06178265.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi
           1DA3]
 gi|269831299|gb|EEZ85449.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi
           1DA3]
          Length = 377

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 132/341 (38%), Gaps = 26/341 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +S +V +    K+    +      +  W P EV +  D   +   N
Sbjct: 8   QNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFV 191
           +II ++  D   +F+   E   I  +A     Y   L   +       + +     +   
Sbjct: 125 HIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHVLNGETVK 184

Query: 192 FYVV---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
             +                 E + FY  FA   +      M G A+  + I RDE+LHLN
Sbjct: 185 VSLYDLKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLN 244

Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +IN ++            +E +Q    +  EA   E  +A      G  +GLN   
Sbjct: 245 GTQHMINLLRNGQDDFTFMQIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
             QY+++I N R   +GL   +   T NP PW++  +    
Sbjct: 305 LSQYVEYITNIRMQAVGLPMAYPEATSNPIPWINAWLSSDN 345


>gi|254776333|ref|ZP_05217849.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium subsp. avium ATCC 25291]
          Length = 320

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 68/333 (20%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +DL  W +   LT  E+ M  R     
Sbjct: 11  NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTIRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       + F 
Sbjct: 65  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY +                       V   + E   FY+GF  
Sbjct: 125 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAKRQELKDYTYELLFE 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 230 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 319


>gi|255535950|ref|YP_003096321.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342146|gb|ACU08259.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
           [Flavobacteriaceae bacterium 3519-10]
          Length = 324

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 128/320 (40%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    +   +   + W+ +EV    D+  ++S   L   E+  +K  L   A
Sbjct: 7   RIGYKPFEYPEIMQFVEAINKSFWVHSEVDFTADVQDFQS--QLEPHEKNAVKNALLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y HL  PE        A  E  HS  +  ++  LG ++   FN   
Sbjct: 65  QIEVSV-KTFWGNLYNHLPKPELNGLGSTFAECEFRHSEAYSRLLEVLGYND--AFNHVV 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+P+I  + ++         S           +E++  L +F ++ E +  ++ FA ILS
Sbjct: 122 EIPAIKKRIDF--------LSNVLKHANSTTPKEYVSSLLLFSILIENVSLFSQFAIILS 173

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE +H N GI +IN+I+ E P L T    +   T++  + 
Sbjct: 174 FTRFKGYMKNVSNIIAWTSVDEQIHANAGIYLINKIREEQPDLLTDSDIEDIYTLVDHSI 233

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
            LE          G    ++  +   +M++  +    +IG++  +  + +   P  W  E
Sbjct: 234 ELEAEILDWIFEMGEIDNVSKENLLNFMKYRVDDSLKKIGMQTRYNVSGDEYRPMVWFEE 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +      +FF  R  +Y +
Sbjct: 294 EVFANSMDDFFAKRPVDYTK 313


>gi|220912864|ref|YP_002488173.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter
           chlorophenolicus A6]
 gi|219859742|gb|ACL40084.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus
           A6]
          Length = 324

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 66/336 (19%), Positives = 124/336 (36%), Gaps = 34/336 (10%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++   K    W       NN W+P +VP+ +D+  W +   LT  E+ +  R  
Sbjct: 12  EAINWNRIQDDKDVDVWN---RLVNNFWLPEKVPLSNDVQSWNT---LTPVEQQLTMRVF 65

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
                 +++      +++      P         AF E+VH+ ++  I ++L   +   E
Sbjct: 66  TGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDE 125

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            F    E  ++  KA   + Y Q                       V   + E   FY+G
Sbjct: 126 AFRWSTENENLQKKAQIVMDYYQGDD---------------PLKRKVASTLLESFLFYSG 170

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +      K+   A+  + I+RDE++H  +      +          +E +  +  +
Sbjct: 171 FYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALETVSEERRQEIKDYTFEL 230

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFP 321
           L E    E+ Y H+      VGL A   ++++ + AN+    +G E +F       NP  
Sbjct: 231 LFELYENEVQYTHDLYDG--VGL-AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAI 287

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
             +   +  +  +FF    + Y  G  +      WD
Sbjct: 288 LSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323


>gi|146329200|ref|YP_001209518.1| ribonucleotide reductase, beta subunit [Dichelobacter nodosus
           VCS1703A]
 gi|146232670|gb|ABQ13648.1| ribonucleotide reductase, beta subunit [Dichelobacter nodosus
           VCS1703A]
          Length = 325

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 69/323 (21%), Positives = 132/323 (40%), Gaps = 19/323 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
             Q+ P +Y    E   +  +++W+ TE     D+  +K+   ++D ER  + R++   +
Sbjct: 9   RIQIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYKT--AISDAERTALTRSMLAIS 66

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y +    E        A  E  H   + +++  LG++  ELF    
Sbjct: 67  QIEVSV-KRFWGDLYHYFPKAEIDDVGGTFAESEVRHKDAYSFLLEQLGMN--ELFTQIT 123

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +P++ A+  +   + +              +QE +  L +F +  E +  +  F  ++S
Sbjct: 124 HIPALMARIEYMEAFMRN---------KDKNNQELVLSLVLFSLFVEHISLFGQFLIMMS 174

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             +  N   GI+   +   ++E +H  FGI + + IK E+P L+T  F    +T+  +A 
Sbjct: 175 FNKYRNLFKGISNAVEATSKEEEIHGRFGIALYHIIKEEHPDLFTDSFYHHLKTLADQAL 234

Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
             E    +     G +  L   + E Y+    N     +G+E  +   E       W   
Sbjct: 235 AAERGILNWIFENGDLPFLQQKTVENYIVNRYNNSLSVLGIESPYTVDEERLKETQWFDI 294

Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
            I   KE +FF  R T+Y +  +
Sbjct: 295 EILSGKENDFFYKRSTDYSKKTK 317


>gi|270262779|ref|ZP_06191050.1| ribonucleoside-diphosphate reductase 1 subunit beta [Serratia
           odorifera 4Rx13]
 gi|270043463|gb|EFA16556.1| ribonucleoside-diphosphate reductase 1 subunit beta [Serratia
           odorifera 4Rx13]
          Length = 359

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 125/311 (40%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K+    +      +  W P EV +  D   ++    L + E+ +   NL +    +S+  
Sbjct: 16  KHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 72

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F+       I  
Sbjct: 73  RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEEILK 132

Query: 158 KANWALQYTQTLS----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
           +A     Y   L                 +    T    A ++ L    +     E + F
Sbjct: 133 RAKDISGYYDDLIEMTGYYHLLGEGTHQVNGKTVTVNLRALKKQLYICLMSVNALEAIRF 192

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
           Y  FA   +      M G A+  + I RDE+LHL     ++N ++   ++P +     E 
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILNLMRSGADDPEMAEIAVEC 252

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
           QQ+   +   A   E  +A      G  +GLN     QY+++I N R   +GL   F+  
Sbjct: 253 QQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLGLPFETR 312

Query: 317 ENPFPWMSEVI 327
            NP PW++  +
Sbjct: 313 SNPIPWINAWL 323


>gi|229818600|ref|YP_002880126.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM
           12333]
 gi|229564513|gb|ACQ78364.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM
           12333]
          Length = 326

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 124/330 (37%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W       NN W+P +VP+ +D+  W +   LTD E+ +  R     
Sbjct: 17  NWNRLQDEKDLEVWN---RLVNNFWLPEKVPVSNDIPSWGT---LTDVEKTLTMRVFTGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       + F 
Sbjct: 71  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDDAFR 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   ++Y +                       V   + E   FY+GF  
Sbjct: 131 WSEENSNLQRKAEIVMEYYRGDE---------------PLKRKVASTLLESFLFYSGFYL 175

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 176 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLEALAPEQREEIKSYTYELLFE 235

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 236 LYENEVQYTEDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPKDETDVNPAILAA 292

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +    + D
Sbjct: 293 LSPNADENHDFFSGSGSSYVIGKAVNTEDD 322


>gi|111023403|ref|YP_706375.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
           jostii RHA1]
 gi|110822933|gb|ABG98217.1| ribonucleotide reductase [Rhodococcus jostii RHA1]
          Length = 321

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 12  NWNRVQDEKDAEVWD---RLVGNFWLPEKVPVSNDIPSWGT---LTPQEKQLTMRVFTGL 65

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       + F 
Sbjct: 66  TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFR 125

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   + Y Q                       V   + E   FY+GF  
Sbjct: 126 WSEENPNLQRKAEIVMDYYQGDE---------------PLKRKVASTLLESFLFYSGFYL 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       + +  +  +L E
Sbjct: 171 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEQLTEAERDDLKNYTFELLFE 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 231 LYDNEVDYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 287

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 288 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 320


>gi|54026269|ref|YP_120511.1| ribonucleotide-diphosphate reductase subunit beta [Nocardia
           farcinica IFM 10152]
 gi|54017777|dbj|BAD59147.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Nocardia farcinica IFM 10152]
          Length = 320

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 121/319 (37%), Gaps = 31/319 (9%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +     N W+P +VP+ +D+  W +   LT  E+ +  R        +++      ++
Sbjct: 22  EVWARLTGNFWLPEKVPVSNDIPSWNT---LTPHEQQLTMRVFTGLTLLDTIQGTVGAVS 78

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
           +      P     L   AF E+VH+ ++  I ++L   +   E F    E  ++  KA  
Sbjct: 79  LIPDALTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSEENRNLQRKAEI 138

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L Y Q                       V   + E   FY+GF   +      K+   A
Sbjct: 139 VLDYYQGDD---------------PLKRKVASTLLESFLFYSGFYLPMHWSSRAKLTNTA 183

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RDE++H  +      +   +      +E +  +  +L+E    E+ Y  +   
Sbjct: 184 DMIRLIIRDEAVHGYYIGYKYQRGLEQVSEAEREELKNYTFELLYELYENEVEYTQDLY- 242

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFET 338
              VGL     + ++++ AN+    +G E LF   E   NP    +   +  +  +FF  
Sbjct: 243 -DEVGLT-EDVKTFLRYNANKALMNLGYEGLFPADETRVNPAILSALSPNADENHDFFSG 300

Query: 339 RVTEYQQGAEL-----KWD 352
             + Y  G  +      WD
Sbjct: 301 SGSSYVIGKAVNTEDEDWD 319


>gi|254505962|ref|ZP_05118107.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus 16]
 gi|219551185|gb|EED28165.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           parahaemolyticus 16]
          Length = 323

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 69/334 (20%), Positives = 123/334 (36%), Gaps = 35/334 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  WK    LT +E+ +  R     
Sbjct: 13  NWNRMQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQTWKQ---LTQEEQTLTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++       A+      P     L   AF EAVH+ ++  + ++L       E F 
Sbjct: 67  TLLDTIQNTVGAPALMADARTPHEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFR 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L+       P                  V  V  E   FY+GF  
Sbjct: 127 WAEENPLLQKKAQLVLEDYLAQDDPLKKK--------------VASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E       + + ++ +++  
Sbjct: 173 PMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAFNELSQQEQAKVKDEAYSLMFS 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
              +E  Y      +  VGL     + ++ + AN+    +G EPLF       NP   M+
Sbjct: 233 LYEIESQYTESLYDQ--VGLT-EDVKHFLHYNANKALMNLGFEPLFPDELCQVNP-AIMA 288

Query: 325 EVI-DLKKEKNFFETRVTEYQQGAEL-----KWD 352
            +  +  +  +FF    + Y  G  +      WD
Sbjct: 289 ALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 322


>gi|320538993|ref|ZP_08038668.1| putative ribonucleoside diphosphate reductase 1, beta subunit,
           ferritin-like protein [Serratia symbiotica str. Tucson]
 gi|320030926|gb|EFW12930.1| putative ribonucleoside diphosphate reductase 1, beta subunit,
           ferritin-like protein [Serratia symbiotica str. Tucson]
          Length = 376

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 137/336 (40%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +S +V +    K+    +      +  W P EV +  D   ++   
Sbjct: 8   QNKNNPLLEPMFFGQSVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSCDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y   L                 +    T
Sbjct: 125 HIIRNIVNDPALVFDDIVTNEEILKRAKDISGYYDDLIEMTSYYHLLGEGRHQVNGKTVT 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
               A ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244

Query: 237 FGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++   ++P +     E QQ+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I+N R   +GLE  FK   NP PW++  +
Sbjct: 305 LCQYVEYISNIRMQAVGLELPFKTRSNPIPWINAWL 340


>gi|326536452|ref|YP_004300883.1| NrdB aerobic ribonucleoside diphosphate reductase small subunit
           [Aeromonas phage 65]
 gi|312262798|gb|ADQ53054.1| NrdB aerobic ribonucleoside diphosphate reductase small subunit
           [Aeromonas phage 65]
          Length = 376

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 127/344 (36%), Gaps = 24/344 (6%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
           S +       + +         +V +   +K    ++      +  W PTE+ M  D   
Sbjct: 3   STVFNTNIVDHTNQHMFFGEEPNVQRFDTMKTRVFYDLMDRQLSFFWRPTEIDMSKDSIQ 62

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV- 126
           +     L+D  + +  +NL   +  +S+      L +  H+S+     ++      E   
Sbjct: 63  FHQ---LSDHAKHVYTQNLFVQSLLDSIQGRGPNLVLLPHVSDVTLENFITAWTMVEGTI 119

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD------ 180
           HS ++ +++ ++  +  E+F+     P I  +A    +Y   +   S             
Sbjct: 120 HSDSYTHMVRAVYPNPTEVFDQVMLTPEIMKRAEAITKYYDAVLLESDKLSAMKFLNLDE 179

Query: 181 --------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDE 231
                     +E L          E + FY  F    S       M G A+  ++I RDE
Sbjct: 180 SVLNSQLTKLKESLYLCVHTINALEAIRFYVSFICNFSFPEFSGTMEGSAKIMKFIARDE 239

Query: 232 SLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKGFV-G 286
           +LHL     +I++ +         E     + K+ ++  E    E  +A   M    + G
Sbjct: 240 NLHLKATQTIISRWQTGKDDPEMVEIAKRLEGKAVSIFEEVVAQEKEWAEYLMGDKSLNG 299

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
           LN      Y++++A+ R    GL   +   +NP PW+++ ++  
Sbjct: 300 LNRDVLCNYIEYLADNRMRSAGLPSSYAKRKNPLPWVTKWLNSD 343


>gi|238794995|ref|ZP_04638591.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           intermedia ATCC 29909]
 gi|238725698|gb|EEQ17256.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           intermedia ATCC 29909]
          Length = 376

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 128/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +S +V +    K+    +      +  W P E+ +  D   +   N
Sbjct: 8   QNKNNQLLEPMFFGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y   L                 +     
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVI 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                 ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++         E     QQ+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNLMRSGEDDPEMAEIAIECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKEI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F    NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLGVPFATRTNPIPWINSWL 340


>gi|41409193|ref|NP_962029.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium subsp. paratuberculosis K-10]
 gi|41398013|gb|AAS05643.1| NrdG [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 324

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/333 (20%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +DL  W +   LT  E+ M  R     
Sbjct: 15  NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       + F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY +                       V   + E   FY+GF  
Sbjct: 129 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAKRQELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323


>gi|118465359|ref|YP_883075.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium 104]
 gi|118166646|gb|ABK67543.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           avium 104]
          Length = 324

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/333 (20%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +DL  W +   LT  E+ M  R     
Sbjct: 15  NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       + F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY +                       V   + E   FY+GF  
Sbjct: 129 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAKRQELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323


>gi|157961884|ref|YP_001501918.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
           pealeana ATCC 700345]
 gi|157846884|gb|ABV87383.1| Ribonucleoside-diphosphate reductase [Shewanella pealeana ATCC
           700345]
          Length = 376

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 116/311 (37%), Gaps = 24/311 (7%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY    +      +  W P EV +  D   +     L + E+ +   NL +    +S+  
Sbjct: 33  KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---AALPEHEKHIFISNLKYQTLLDSIQG 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +  +A    +S PE   ++   +F E +HS ++ +II ++  D   +FN   E   I  
Sbjct: 90  RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFNDIVENEEILK 149

Query: 158 KANWALQYTQTLS----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
           +A+    Y   L                        TK   ++ L    V   V E + F
Sbjct: 150 RASDIANYYDHLIKLSQAYHLLGEGSHEIDGEIIEVTKREIKKALYLCMVSVNVLEAIRF 209

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y  FA   +      M G A+  + I RDE+LHLN    ++  +          E  ++ 
Sbjct: 210 YVSFACSFAFAERKVMEGNAKIIRLIARDEALHLNSTQHILKIMHAGKDDPEMAEIAKEC 269

Query: 262 RT----MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                 +  +A   E  +A      G  +GLN     QY+++I N R   +     +   
Sbjct: 270 EQTAIDIFIKAAEQEKEWAKYLFKDGSMIGLNETILCQYVEYITNERMKAVNFASPYAEQ 329

Query: 317 ENPFPWMSEVI 327
            NP PWM   +
Sbjct: 330 TNPLPWMKNWL 340


>gi|317492553|ref|ZP_07950980.1| ribonucleotide reductase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919303|gb|EFV40635.1| ribonucleotide reductase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 376

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 129/328 (39%), Gaps = 25/328 (7%)

Query: 22  KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           + M   +S +V +    K+    +      +  W P EV +  D   ++    L + E+ 
Sbjct: 16  EPMFFGQSVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKH 72

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +II ++  
Sbjct: 73  IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVN 132

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTTGTKDADQE 184
           D   +F+       I  +A     Y   L                 +    T    A ++
Sbjct: 133 DPATVFDDIVTNEEILKRAKDISGYYDDLIEMSSYWHLLGEGTHNVNGKTVTVNLRALKK 192

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L    +     E + FY  FA   +      M G A+  + I RDE+LHL     ++N 
Sbjct: 193 QLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHILNL 252

Query: 245 IKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
           ++         E     +Q+   +   A   E  +A      G  +GLN     QY+++I
Sbjct: 253 MRSGQDDPEMAEVAVECEQQCYDLFVLAAEQEKEWADYLFRDGSMIGLNKDILCQYVEYI 312

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            N R   +GL+  F+   NP PW++  +
Sbjct: 313 TNIRMQAVGLKLPFQTRSNPIPWINAWL 340


>gi|319441868|ref|ZP_07991024.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           variabile DSM 44702]
          Length = 332

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/339 (16%), Positives = 116/339 (34%), Gaps = 48/339 (14%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  W +   L++ E+    R     
Sbjct: 23  NWNTIPDDKDLEVWD---RLTGNFWLPEKVPLSNDIKSWGT---LSEAEQTATMRVFTGL 76

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++       ++      P         AF E+VH+ ++  I  +L       + F 
Sbjct: 77  TMLDTIQGTVGATSLIDDAVTPHEEAVFTNIAFMESVHAKSYSSIFMTLASTPQINDAFR 136

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA+  L + Q                           + E   FY+GF  
Sbjct: 137 WSEENENLQTKADIVLNFYQGDDPLKKKV---------------ASTLLESFLFYSGFYL 181

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  ++ +
Sbjct: 182 PMYWSSHAKLTNTADVIRLIIRDEAVHGYYIGYKYQRALEHETEARRQELKDHTFELVFD 241

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---------- 317
               E  Y  +      +G      ++++++ AN+  + +G E LF   E          
Sbjct: 242 LYDNECQYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPVDETRVSPSIISA 298

Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQG---AELKWD 352
            NP           +  +FF    + Y  G     +  D
Sbjct: 299 LNP--------GGDENHDFFSGSGSSYVIGKAENTVDDD 329


>gi|118469232|ref|YP_886661.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           smegmatis str. MC2 155]
 gi|118469934|ref|YP_885432.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170519|gb|ABK71415.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           smegmatis str. MC2 155]
 gi|118171221|gb|ABK72117.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           smegmatis str. MC2 155]
          Length = 324

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/333 (20%), Positives = 127/333 (38%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +D+  W +   LTD+E+ +  R     
Sbjct: 15  NWNRLQDEKDAEVWH---RLTGNFWLPEKVPVSNDIQSWHT---LTDNEKQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       + F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSNIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY +                       V   + E   FY+GF  
Sbjct: 129 WSEENPNLQRKAAIVMQYYRGDE---------------PLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDEEKKQELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLY--DSVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK-----WD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LAPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323


>gi|257069608|ref|YP_003155863.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Brachybacterium faecium DSM 4810]
 gi|256560426|gb|ACU86273.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Brachybacterium faecium DSM 4810]
          Length = 322

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 123/336 (36%), Gaps = 34/336 (10%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++   K    W+       N W+P ++P+ +D+  W  +   +++E+ M     
Sbjct: 10  EAINWNRIPDPKDQEVWD---RLTGNFWLPEKIPLSNDIQSWSRR---SEEEQKMAMHVF 63

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
                 +++      +++      P         AF E+VH+ ++  I ++L   +   E
Sbjct: 64  TGLTLLDTVQGTVGAISLIPDAVTPHEEAVYTNIAFMESVHAKSYSQIFSTLANTKQIDE 123

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            F+       +  KA   + Y +                   +   V  V+ E   FY+G
Sbjct: 124 AFHWGATNEQLQKKAQIIMSYYEGDD---------------PEKRKVASVLLESFLFYSG 168

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +      ++   A+  + I+RDE++H  +      +   +       E +  + ++
Sbjct: 169 FYLPMRYSSHGELTNTADIIRLIIRDEAVHGYYIGYKYQKAVEKLSAERQAELKDYTFSL 228

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFP 321
           L E    E  Y  +      VG      + ++++ AN+    +G E LF       NP  
Sbjct: 229 LMELYDNEEVYTEDIY--DPVGWT-EDVKVFLRYNANKALMNLGYEGLFPQEATQVNPAI 285

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAELK-----WD 352
             S   +  +  +FF    + Y  G  ++     WD
Sbjct: 286 LASLSPNADENHDFFSGSGSSYVMGKAVETEDDDWD 321


>gi|227504013|ref|ZP_03934062.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
 gi|227199407|gb|EEI79455.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
          Length = 329

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 122/330 (36%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +DL  WK+   LT+ E+    R     
Sbjct: 20  NWNTVPDDKDSEVWD---RLTGNFWLPEKVPVSNDLQSWKT---LTEHEQQTTMRVFAGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++      P         AF E+VH+ ++  I  +L       + F 
Sbjct: 74  TLLDTIQGTVGAVSLLPDAKTPHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y +                           + E   FY+GF  
Sbjct: 134 WSEENENLQRKAKIVMSYYKGADPLKKKV---------------ASTLLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E P    +E +  +  +L+E
Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQNGYNELPAEKQEEIKGYTFDLLYE 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 239 LYDNEIDYTEDLY--DELGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +  +   D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDD 325


>gi|295395248|ref|ZP_06805456.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972010|gb|EFG47877.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 324

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 127/341 (37%), Gaps = 28/341 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           + +K  L +  D      ++     E +     N W+P +VP+ +D+  W +   LTDDE
Sbjct: 1   MSEKLKLVSHVDAINWNRIEDDVDMEVWDRLTANFWLPEKVPLSNDVQSWAT---LTDDE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           +L+  R        +++      +++      P         AF E+VH+ ++  I ++L
Sbjct: 58  KLLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTL 117

Query: 139 GLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
                  E F    E  ++  KA   + Y +                       V   + 
Sbjct: 118 CNTREIDEAFRWSTENQNLQKKAQIIVDYYRGDD---------------PLKRKVASTLL 162

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           E   FY+GF   +      K+   A+  + I+RDE++H  +      +           E
Sbjct: 163 ESFLFYSGFYLPMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQRALANESTERRDE 222

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY- 315
            +  +  +L++    E+ Y H+      VGL+    ++++ + AN+    +G E +F   
Sbjct: 223 LKDYTFALLYDLYENEVQYTHDLY--DSVGLS-EDVKKFLNYNANKALMNLGYEAMFPST 279

Query: 316 --TENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
               NP    +      +  +FF    + Y   +    + D
Sbjct: 280 VTDVNPAILSALSPSSDENHDFFSGSGSSYVIGKAENTEDD 320


>gi|238760194|ref|ZP_04621340.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           aldovae ATCC 35236]
 gi|238701573|gb|EEP94144.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
           aldovae ATCC 35236]
          Length = 376

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 128/336 (38%), Gaps = 25/336 (7%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + N   + M   +S +V +    K+    +      +  W P E+ +  D   +   N
Sbjct: 8   QNKNNQLLEPMFFGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
           +II ++  D   +F+       I  +A     Y   L                 +     
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVV 184

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
                 ++ L    +     E + FY  FA   +      M G A+  + I RDE+LHL 
Sbjct: 185 VNLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLT 244

Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               ++N ++         E     QQ+   +   A   E  +A      G  +GLN   
Sbjct: 245 GTQHILNLMRAGEDDPEMAEIAIECQQQCYDLFVLAAEQEKEWAEYLFRDGSMIGLNKEI 304

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             QY+++I N R   +GL   F    NP PW++  +
Sbjct: 305 LCQYVEYITNIRMQAVGLGIPFATRTNPIPWINSWL 340


>gi|269864946|ref|XP_002651751.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|269865852|ref|XP_002652068.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|269866233|ref|XP_002652201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220062966|gb|EED41855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063214|gb|EED41988.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063944|gb|EED42305.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 226

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 28/235 (11%)

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171
            +   Q   E +HS  +  +I +L  D+ E   LFN    +PSI  KA WA ++  + +S
Sbjct: 1   MFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIASDTS 60

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                              V +   EG++F   FA I  L +   M G+    + I RDE
Sbjct: 61  FD--------------TRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDE 106

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
            LH +F   +   I  +               ++ EA  +E  +  E++P   +G+N   
Sbjct: 107 GLHTDFACLLHKYINNK---------CTVIEDIVREAVAIEQEFLSESLPVSLIGMNCKL 157

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
             QY++F+A+R    +G + ++  + NPF +M E I L+ + NFFE R   YQ+G
Sbjct: 158 MCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 210


>gi|298345735|ref|YP_003718422.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii ATCC 43063]
 gi|304390565|ref|ZP_07372518.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|298235796|gb|ADI66928.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii ATCC 43063]
 gi|304326321|gb|EFL93566.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
          Length = 322

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 119/323 (36%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P ++P+ +D+  WK+   L +DE+ M  R        
Sbjct: 13  NWNDIEDDKDLEVWDRLTGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLL 69

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++      +++      P         AF E+VH+ ++  + ++L   E   E F    
Sbjct: 70  DTIQGTVGAVSLIPDSRTPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEIKESFRWSE 129

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  L Y     S                       + E   FY+GF   + 
Sbjct: 130 ENEYLQKKAHIVLDYYHGNDSEKRKV---------------ASTMLESFLFYSGFYAPMY 174

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          E+     +E +  + ++L +   
Sbjct: 175 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAMRESSESRRQEMKDYTFSLLMDLYD 234

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E  Y         +GL     ++++++ AN+    +G E LF   +   NP    +   
Sbjct: 235 NEELYTETLY--DPLGLT-EDVKKFLKYNANKALMNLGYEALFTADQVNVNPAILAALSP 291

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
              +  +FF    + Y  G   +
Sbjct: 292 AADENHDFFSGSGSSYAIGTAEE 314


>gi|294877483|ref|XP_002768004.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239870142|gb|EER00722.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 247

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 22/201 (10%)

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
            ++  +F     +PS+  KA WAL +                D  F + L   Y   EG+
Sbjct: 45  QEKERIFEAIETIPSVQHKAEWALAWIN-------------DDNCFAERLVA-YACVEGI 90

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            F   F  +  L +   M G+    + I RDE LH +FG  +       N   +T+  ++
Sbjct: 91  LFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFGCLLY------NMLKFTRLPEE 144

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
           +   ++  A  +E  +  + +P G +G+NA    +Y++F+A+R    +G   ++  + NP
Sbjct: 145 RVEDIVRSAVNVEREFITDALPVGLIGMNAELMGRYIEFVADRLLVALGYAKIYN-SANP 203

Query: 320 FPWMSEVIDLKKEKNFFETRV 340
           F WM+ +I L+ + NFFE RV
Sbjct: 204 FDWMT-MISLQGKTNFFEKRV 223


>gi|312130784|ref|YP_003998124.1| ribonucleotide reductase [Leadbetterella byssophila DSM 17132]
 gi|311907330|gb|ADQ17771.1| ribonucleotide reductase [Leadbetterella byssophila DSM 17132]
          Length = 324

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 117/320 (36%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y        +    +W+ +EV    D   + S   L+  ER  +K +L   A
Sbjct: 7   RINYKPFEYPEILTFTSAINKAYWVHSEVDFTADTQDFHSH--LSPAERSAVKNSLLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E          +Y H   PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QIEV-AVKTFWGNLYDHFPKPEFNGLGTTFAECEFRHSEAYSRLLEVLGYNNE--FQKLL 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+P I  +  +                  +  ++++  L +F ++ E +  ++ FA ILS
Sbjct: 122 EIPVIKQRVEYL--------GGVLKDTRSEDRKKYVISLILFTILIENVSLFSQFAIILS 173

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE +H N GI ++N I+ E P  +  E   +    + E+ 
Sbjct: 174 FTRFKGYMKNVSNIIAWTSVDEQIHANGGIYIVNTIRDEFPDFFDPETITQIEDTVRESI 233

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325
            +E         +G    +       +M+F  +    +IG  PLF  +     P  W  E
Sbjct: 234 EVEERILDWIFSEGEIEIIKKKDLLNFMKFRIDDSMKKIGFSPLFHVSSADYQPIAWFEE 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +      +FF  R  +Y +
Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313


>gi|294338139|emb|CBJ93977.1| Probable ribonucleotide reductase (small subunit) [Campylobacter
           phage CP220]
          Length = 369

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 132/330 (40%), Gaps = 19/330 (5%)

Query: 17  VNVDDKRMLNA---RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           ++   + +       S    +  +KY      +       W   EV    D A +   N 
Sbjct: 10  IDFTKEPLFFGTGKNSQRYDV--IKYPIFETLFKKMAGFDWQEDEVQCTKDQADF---NV 64

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL-LRQAFEEAVHSHTFQ 132
           L +  +    R L      +S+    ++  I   ++NPE    +   Q FE + HS ++ 
Sbjct: 65  LNEAMKHSYTRVLNKLIFLDSIQGRGLLQTIGSIVTNPELEVCMTEWQRFEISRHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT----LSSPSFTTGTKDADQEFLQD 188
           +I+ S+  +  ++F+   E+P +   A+   +  +     ++         +  +  + +
Sbjct: 125 HILRSVYANPSKIFDESFEIPELLELADSISKPYEEAFEAVTKYHLGLIDTEEVKVKVLN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRDESLH---LNFGIDVINQ 244
           + V   + EG+ FY+GFA I S+      M    +  Q I RDE+LH       I ++++
Sbjct: 185 MLVEINILEGVRFYSGFATIWSMHYSQGLMERTGKILQLICRDENLHLAITQNLIKILSR 244

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRR 303
              E         +        EA   E  +      KG F+G+     + Y++++ N+R
Sbjct: 245 SPEEGFINAWNSIKDNITDRYLEAADQEFKWIDYLFSKGAFLGMTPELAKNYIKYLINKR 304

Query: 304 CHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
              IG + +F  + +NP PW+   I+  K 
Sbjct: 305 LKAIGFKEVFAGFNKNPIPWVETYINYDKN 334


>gi|262203177|ref|YP_003274385.1| ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM
           43247]
 gi|262086524|gb|ACY22492.1| Ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM
           43247]
          Length = 334

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT+ E+ +  R     
Sbjct: 25  NWNRVPDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTEYEKQLTMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++    + P     L   AF E+VH+ ++  I ++L   +   E F 
Sbjct: 79  TLLDTIQGTVGAVSLIPDATTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFR 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   + Y +                       V   + E   FY+GF  
Sbjct: 139 WSEENDQLQRKAQIVMDYYRGDD---------------PLKRKVASTLLESFLFYSGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 184 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLEVQTAERRQELKDYTFELLFE 243

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VGL     ++++++ AN+    +G E +F   E   NP    +
Sbjct: 244 LYDNESDYTEALY--DEVGLT-EDVKKFLRYNANKALMNLGYEAMFPKDETDVNPAILSA 300

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 333


>gi|315654326|ref|ZP_07907234.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii ATCC 51333]
 gi|315657771|ref|ZP_07910651.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315491361|gb|EFU80978.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii ATCC 51333]
 gi|315491568|gb|EFU81179.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 322

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 120/323 (37%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P ++P+ +D+  WK+   L +DE+ M  R        
Sbjct: 13  NWNDIEDDKDLEVWDRLTGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLL 69

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++      +++      P         AF E+VH+ ++  + ++L   E   E F    
Sbjct: 70  DTIQGTVGAVSLIPDSRTPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEINESFRWSE 129

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  L Y                     +   V   + E   FY+GF   + 
Sbjct: 130 ENEYLQKKAHIVLDYYHGND---------------PEKRKVASTMLESFLFYSGFYAPMY 174

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          E+     +E +  + ++L +   
Sbjct: 175 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAMRESSESRRQEMKDYTFSLLMDLYD 234

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E  Y         +GL     ++++++ AN+    +G E LF   +   NP    +   
Sbjct: 235 NEELYTETLY--DPLGLT-EDVKKFLKYNANKALMNLGYEALFTADQVNVNPAILAALSP 291

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
              +  +FF    + Y  G   +
Sbjct: 292 AADENHDFFSGSGSSYAIGTAEE 314


>gi|297570727|ref|YP_003696501.1| ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931074|gb|ADH91882.1| Ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 324

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 122/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+++  K    W+       N W+P ++P+ +D+  W +   L   E+LM  R     
Sbjct: 15  NWNKIIDEKDQEVWD---RLTGNFWLPEKIPLSNDIQSWNT---LKPHEQLMTTRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L   +   E F 
Sbjct: 69  TLLDTVQGTVGAISLIPDAITPHEEAVLTNIAFMESVHAKSYSSIFSTLISSQEIEETFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L Y +                   +   V   + E   FY+GF  
Sbjct: 129 WSEENPYLQKKAQIVLDYYRGDD---------------PEKRKVASTMLESFLFYSGFYA 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q           E    + ++L +
Sbjct: 174 PMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQQAVKRASAERQAELMDYTYSLLED 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         +GL     + ++++ AN+    +G E LF   +   NP    +
Sbjct: 234 LYENEEGYTESLY--DEMGLT-EDVKMFLRYNANKALMNLGYEALFPADQTAVNPAILAA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
              +  +  +FF    + Y  G         WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGTAEATEDEDWD 323


>gi|323495950|ref|ZP_08101016.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
           sinaloensis DSM 21326]
 gi|323318985|gb|EGA71930.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
           sinaloensis DSM 21326]
          Length = 323

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/334 (20%), Positives = 124/334 (37%), Gaps = 35/334 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  WK    LT++E+ +  R     
Sbjct: 13  NWNRMQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++       A+      P     L   AF EAVH+ ++  + +++       E F 
Sbjct: 67  TLLDTIQNTVGAPALMADARTPHEEAVLTNIAFMEAVHARSYSSVFSTMCTTPQIDEAFR 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L+       P                  V  V  E   FY+GF  
Sbjct: 127 WADENPLLQKKAQLVLEDYLAQGDPLKKK--------------VASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          E       + + ++ +++  
Sbjct: 173 PMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAFNELSEQEQAKVKDEAYSLMFS 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
              +E  Y      +  VGL     + ++ + AN+    +G EPLF       NP   M+
Sbjct: 233 LYEIESQYTESLYDQ--VGLT-EDVKHFLHYNANKALMNLGFEPLFPDELCQVNP-AIMA 288

Query: 325 EVI-DLKKEKNFFETRVTEYQQGAEL-----KWD 352
            +  +  +  +FF    + Y  G  +      WD
Sbjct: 289 ALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 322


>gi|294338336|emb|CBJ94375.1| Probable ribonucleotide reductase (small subunit) [Campylobacter
           phage CPt10]
          Length = 369

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 132/330 (40%), Gaps = 19/330 (5%)

Query: 17  VNVDDKRMLNA---RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           ++   + +       S    +  +KY      +       W   EV    D A +   N 
Sbjct: 10  IDFTKEPLFFGTGKNSQRYDV--IKYPIFETLFKKMAGFDWQEDEVQCTKDQADF---NV 64

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL-LRQAFEEAVHSHTFQ 132
           L +  +    R L      +S+    ++  I   ++NPE    +   Q FE + HS ++ 
Sbjct: 65  LNEAMKHSYTRVLNKLIFLDSIQGRGLLQTIGSIVTNPELEVCMTEWQRFEISRHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT----LSSPSFTTGTKDADQEFLQD 188
           +I+ S+  +  ++F+   E+P +   A+   +  +     ++         +  +  + +
Sbjct: 125 HILRSVYANPSKIFDESFEIPVLLELADSISKPYEEAFEAVTKYHLGLIDIEDVKVKVLN 184

Query: 189 LFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRDESLH---LNFGIDVINQ 244
           + +   + EG+ FY+GFA I S+      M    +  Q I RDE+LH       I ++++
Sbjct: 185 MLIEINILEGVRFYSGFATIWSMHYSQGLMERTGKILQLICRDENLHLAITQNLIKILSR 244

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRR 303
              E         +        EA   E  +      KG F+G+     + Y++++ N+R
Sbjct: 245 SPEEGFINAWNSIKDNITDRYLEAADQEFKWIDYLFSKGAFLGMTPELAKNYIKYLINKR 304

Query: 304 CHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
              IG + +F  + +NP PW+   I+  K 
Sbjct: 305 LKAIGFKEVFAGFNKNPIPWVETYINYDKN 334


>gi|159184148|ref|NP_353105.2| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
           tumefaciens str. C58]
 gi|159139483|gb|AAK85890.2| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium
           tumefaciens str. C58]
          Length = 324

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 119/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W +   L  +E+ +  R     
Sbjct: 15  NWNRIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWGT---LKPEEQELTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +    + P     L   +F EAVH+ ++  I ++L       + + 
Sbjct: 69  TLLDTIQNGVGAVRLMPDSATPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   ++   +                         V  E   FY+GF  
Sbjct: 129 WSEENEFLQRKSAIIMREYDSGDPLKKKI---------------ASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMFWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALDRLGEAQRQEIKDFAFDLLLE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +      VGL     +Q++ + AN+    +G E LF       NP    +
Sbjct: 234 LYDNEAKYTEDLYDG--VGLT-EDVKQFLHYNANKALMNLGYEALFPAEACRVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|169630485|ref|YP_001704134.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           abscessus ATCC 19977]
 gi|169242452|emb|CAM63480.1| Probable ribonucleoside-diphosphate reductase beta subunit
           [Mycobacterium abscessus]
          Length = 324

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/319 (19%), Positives = 121/319 (37%), Gaps = 31/319 (9%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +     N W+P +VP+ +D+  W +   LTD E+ +  R        +++      ++
Sbjct: 26  EVWDRLTGNFWLPEKVPVSNDIQSWNT---LTDHEKQLTMRVFTGLTLLDTIQGTVGAVS 82

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
           +      P         AF E+VH+ ++  I ++L       + F    E P++  KA  
Sbjct: 83  LIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDDAFRWSEENPNLQRKAEI 142

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            ++Y +                       V   + E   FY+GF   +      K+   A
Sbjct: 143 VMEYYRGDE---------------PLKRKVASTLLESFLFYSGFYLPMYWSSRAKLTNTA 187

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RDE++H  +      +           E ++ +  +L+E    E  Y  +   
Sbjct: 188 DMIRLIIRDEAVHGYYIGYKFQRGLERVDEAKRAEIKEYTYDLLYELYENETDYTEDLY- 246

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFET 338
              VGL     ++++++ AN+    +G E LF   E   NP    +   +  +  +FF  
Sbjct: 247 -DEVGLT-EDVKKFLRYNANKALMNLGYEALFPREETDVNPAILSALSPNADENHDFFSG 304

Query: 339 RVTEYQQGAEL-----KWD 352
             + Y  G  +      WD
Sbjct: 305 SGSSYVIGKAVNTEDEDWD 323


>gi|226365904|ref|YP_002783687.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
           opacus B4]
 gi|226244394|dbj|BAH54742.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus opacus
           B4]
          Length = 321

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 12  NWNRVQDEKDAEVWD---RLVGNFWLPEKVPVSNDIPSWGT---LTAQEKQLTMRVFTGL 65

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       + F 
Sbjct: 66  TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFR 125

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   + Y Q                       V   + E   FY+GF  
Sbjct: 126 WSEENPNLQRKAEIVMDYYQGDE---------------PLKRKVASTLLESFLFYSGFYL 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       + +  +  +L E
Sbjct: 171 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEQLTEAERDDLKNYTFELLFE 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 231 LYDNEVDYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 287

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 288 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 320


>gi|183981661|ref|YP_001849952.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2
           [Mycobacterium marinum M]
 gi|183174987|gb|ACC40097.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2
           [Mycobacterium marinum M]
          Length = 324

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRVQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       + F 
Sbjct: 69  TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L+Y +                       V   + E   FY+GF  
Sbjct: 129 WSEENSNLQRKAEIVLEYYRGDD---------------PLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLAAADEARRTELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTQDEDWD 323


>gi|118617484|ref|YP_905816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           ulcerans Agy99]
 gi|118569594|gb|ABL04345.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2
           [Mycobacterium ulcerans Agy99]
          Length = 324

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRVQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       + F 
Sbjct: 69  TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L+Y +                       V   + E   FY+GF  
Sbjct: 129 WSEENSNLQRKAEIVLEYYRGDD---------------PLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLAAADEARRTELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATQDEDWD 323


>gi|296140644|ref|YP_003647887.1| ribonucleoside-diphosphate reductase [Tsukamurella paurometabola
           DSM 20162]
 gi|296028778|gb|ADG79548.1| Ribonucleoside-diphosphate reductase [Tsukamurella paurometabola
           DSM 20162]
          Length = 334

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LTD E+ +  R     
Sbjct: 25  NWNRVPDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTDYEKQLTMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++    + P     L   AF E+VH+ ++  I ++L       + F 
Sbjct: 79  TLLDTIQGTVGAVSLIPDATTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTREIDDAFR 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   + + +                       V   + E   FY+GF  
Sbjct: 139 WSEENEQLQRKAQIVMDFYRGDD---------------PLKRKVASTLLESFLFYSGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 184 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLETESPQRREELKDYTFDLLME 243

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VGL+    ++++++ AN+    +G E LF       NP    +
Sbjct: 244 LYANEEDYTESLY--DEVGLS-EDVKKFLRYNANKALMNLGYEALFPKDATDVNPAILSA 300

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 333


>gi|300776394|ref|ZP_07086252.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC
           35910]
 gi|300501904|gb|EFK33044.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC
           35910]
          Length = 371

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 122/320 (38%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    +   +   + W+ +EV    D+  + S   L   E+  +K  L   A
Sbjct: 54  RVSYKPFEYPEVLQFVEAINKSFWVHSEVDFTADVQDFHS--QLEPHEKHAVKNALLAIA 111

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y HL  PE        A  E  HS  +  ++  LG ++   F    
Sbjct: 112 QIEVSV-KTFWGNLYNHLPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDE--FLNVI 168

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E+P++  +  +           +         +E++  L +F ++ E +  ++ FA ILS
Sbjct: 169 EIPAVKGRIEFL--------GNALKHANSATPKEYVSALLLFSILVENVSLFSQFAIILS 220

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE +H N GI +IN+I+ E P L T    +   T++ E+ 
Sbjct: 221 FTRFKGFMKNVSNIIAWTSVDEQIHANAGIYLINKIREEQPDLLTDSDIEDIYTLVDESI 280

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
             E          G    ++      +M++  +    +I ++  +  T     P  W  E
Sbjct: 281 AREGDILSWIFELGEIDNVSKEDLLNFMKYRVDDSLKKINMKTRYNITPEQYRPMVWFEE 340

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +      +FF  R  +Y +
Sbjct: 341 EVFANSLDDFFAKRPVDYTK 360


>gi|15827930|ref|NP_302193.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           leprae TN]
 gi|221230407|ref|YP_002503823.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           leprae Br4923]
 gi|14195114|sp|Q9CBQ2|RIR2_MYCLE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|13093483|emb|CAC30684.1| ribonucleotide reductase small subunit [Mycobacterium leprae]
 gi|219933514|emb|CAR71826.1| ribonucleotide reductase small subunit [Mycobacterium leprae
           Br4923]
          Length = 325

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W+       N W+P +VP+ +DL  W +   LT  E+ +  R     
Sbjct: 16  NWNWLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLPSWGT---LTASEKQLTMRVFTGL 69

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       E F 
Sbjct: 70  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTAEIDEAFR 129

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   ++Y +                       V   + E   FY+GF  
Sbjct: 130 WSEENNNLQRKAKIVMEYYRGDE---------------PLKRKVASTLLESFLFYSGFYL 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +  +        E ++ +  +L E
Sbjct: 175 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLVLVDDARRAELKEYTYELLFE 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   +  VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 235 LYDNEVEYTQDLYDR--VGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 291

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 324


>gi|323359290|ref|YP_004225686.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum
           StLB037]
 gi|323275661|dbj|BAJ75806.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum
           StLB037]
          Length = 324

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 121/327 (37%), Gaps = 28/327 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    NN W+P +VP+ +D+  W +   LT +E+ +  R        
Sbjct: 15  NWNRIQDDKDLEVWNRLVNNFWLPEKVPLSNDIQSWNT---LTPEEQTLTMRVFTGLTLL 71

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++      +++      P         AF E+VH+ ++  I ++L   +   E F    
Sbjct: 72  DTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWST 131

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA   + Y +                       V   + E   FY+GF   + 
Sbjct: 132 ENEFLQKKARIVMDYYRGDD---------------PLKRKVASTLLESFLFYSGFYLPMH 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +           + +  + ++L+E   
Sbjct: 177 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLETVDQARRDDIKDYTFSLLYELYD 236

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327
            E+ Y         VGL+    ++++ + AN+    +G E +F  +    NP    +   
Sbjct: 237 NEVGYTQSLY--DAVGLS-EDVKKFLHYNANKALMNLGYEAMFPSSVTNVNPAILSALSP 293

Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
           +  +  +FF    + Y   +    + D
Sbjct: 294 NADENHDFFSGSGSSYVIGKAEATEDD 320


>gi|92112513|ref|YP_572441.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter
           salexigens DSM 3043]
 gi|91795603|gb|ABE57742.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 326

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 115/322 (35%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +D++ W +   LT+ E+ +  R     
Sbjct: 17  NWNRLQDEKDLEVWN---RLTANFWLPEKVPLSNDVSAWNT---LTEQEQTLTIRVFTGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++        +      P         +F E+VH+ ++  I ++L       + + 
Sbjct: 71  TLLDTIQGTIGAPTLIEDAVTPHEEAVFTNISFMESVHARSYSSIFSTLCATRDVDDAYR 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L   +                       V  V  E   FY+GF  
Sbjct: 131 WSEENPHLQNKAELILNRYRMDD---------------PLMRKVASVFLESFLFYSGFYL 175

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q          +E +  +  +L E
Sbjct: 176 PMYWASRGKLTNTADLIRLIIRDEAVHGYYIGYKFQQALARESAERQQEIKDATFDLLLE 235

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y         VGL     + ++ + AN+    +G EPLF       NP    +
Sbjct: 236 LYDNEVHYTESLYDD--VGLT-EEVKAFLHYNANKALMNLGYEPLFPGATEAVNPAILAA 292

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
                ++  +FF    + Y  G
Sbjct: 293 LSPGAEENHDFFSGSGSSYVIG 314


>gi|296171158|ref|ZP_06852606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894294|gb|EFG74049.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 324

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 124/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +DL  W +   LT  E+ +  R     
Sbjct: 15  NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDLPSWAT---LTSGEKQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       + F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY +                       V   + E   FY+GF  
Sbjct: 129 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDEAKRAELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323


>gi|251797995|ref|YP_003012726.1| ribonucleotide-diphosphate reductase subunit beta [Paenibacillus
           sp. JDR-2]
 gi|247545621|gb|ACT02640.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. JDR-2]
          Length = 318

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/309 (19%), Positives = 117/309 (37%), Gaps = 21/309 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+P+ DD   W     ++D ER + K  LG     +++     +  I
Sbjct: 17  FWQQNVMQFWTDEEIPLSDDKMDWME---MSDTERTVYKNVLGGLTLLDTIQGGVGMPKI 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+   + +  L   +  E +H+ ++  I T+L   E    +F        +  KA   
Sbjct: 74  LEHVDGLQRKAVLAFMSMMEQIHAKSYSSIFTTLASTEEIDAIFQWVETNEQLQKKATLV 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             + Q +             ++ L       V  E   FY+GF   L L    KM    E
Sbjct: 134 SSWYQGIE-----------TKQQLYKAMAASVFLESYLFYSGFFYPLYLAGQGKMTSSGE 182

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  +   +  ++  +       + +++   +L+     E+ Y       
Sbjct: 183 IIDLILRDESIHGLYVGVLAQELFNQFTPEEQAQLKEEVFALLNTLYENEVVYTDNLY-- 240

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL     + Y+++ AN+    +G EP F     NP  + + +    K+ +FF  +  
Sbjct: 241 SPIGL-QEDVKAYVRYNANKALMNLGFEPYFPEEPVNPIVF-NGISTHTKQHDFFSKKGN 298

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 299 GYVRTVHIE 307


>gi|99080359|ref|YP_612513.1| ribonucleotide-diphosphate reductase subunit beta [Ruegeria sp.
           TM1040]
 gi|99036639|gb|ABF63251.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Ruegeria sp. TM1040]
          Length = 338

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 125/343 (36%), Gaps = 32/343 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++   R +    + N+L   K    W        N W+P +VP+ +D+  W   + LT D
Sbjct: 16  DMTQARAVPKAINWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSW---SQLTPD 69

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ +  R        +++        + +    P     L   +F EAVH+ ++  + ++
Sbjct: 70  EQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITPHEEAVLSNISFMEAVHARSYSSVFST 129

Query: 138 LGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L       E F    E   + AK+   L      +SP                  +  V 
Sbjct: 130 LCQTTEVDEAFRWSAENEHLQAKSRLILGEYDATASP--------------LRKKIASVF 175

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      ++   A+  + I+RDE++H  +      +          K
Sbjct: 176 LESFLFYSGFYLPMHWSSRARLTNTADLIRLIIRDEAIHGYYIGYKFQRGLERASEAERK 235

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +  +  +L +   +E  Y  +      +GL     + ++ + AN+    +G E LF  
Sbjct: 236 ELKDFAFGLLFDLYDIEARYTEQLYDG--LGLT-EDVKNFLHYNANKALQNLGFEALFPE 292

Query: 316 TE---NPFPWMSEVI-DLKKEKNFFETRVTEYQ--QGAELKWD 352
                NP   M+ +     +  +FF    + Y   +    + D
Sbjct: 293 ETCRVNP-AIMAALSPGSDENHDFFSGSGSSYVIGKAVATEDD 334


>gi|240169547|ref|ZP_04748206.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           kansasii ATCC 12478]
          Length = 320

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 126/330 (38%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   LT +E+ +  R     
Sbjct: 11  NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTANEKQLTMRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       + F 
Sbjct: 65  TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   LQY +                       V   + E   FY+GF  
Sbjct: 125 WSEENPNLQRKAEIVLQYYRGDE---------------PLKRKVASTLLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +       +   E +  +  +L E
Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDEVKRAELKDYTYELLFE 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 230 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +    + +
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVVTEDE 316


>gi|254819781|ref|ZP_05224782.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           intracellulare ATCC 13950]
          Length = 322

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/333 (21%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D A W++   LT  E+    R     
Sbjct: 13  NWNRLPDPKDAQVWD---RLTGNFWLPEKVPLSNDSASWQT---LTAQEQQTTVRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++  A    +++      P     L   AF E+VH+ ++  I ++L       + F+
Sbjct: 67  TLLDTTQATVGAVSMIADAVTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTRQIDDAFD 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA   + Y +                          V+ E   FY+GF  
Sbjct: 127 WSERNPHLQRKAQIVVDYYRGDD---------------ALKRKAASVMLESFLFYSGFYL 171

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   E         ++ +  +L+ 
Sbjct: 172 PMYWSSRGKLTNTADIIRLIIRDEAVHGFYIGYKCQRGLAELSEPERSGHREYTYELLNA 231

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI YAH+      +G        YM+F ANR    +G EP+F  ++   NP    +
Sbjct: 232 LYTNEIDYAHDLYDG--LGWT-DDVLPYMRFNANRALANLGYEPMFGPSDCRVNPAVLSA 288

Query: 325 EVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
                 +  +FF    + Y  G+     +  WD
Sbjct: 289 LDPGAGENHDFFSGSGSSYVIGSHQATEDADWD 321


>gi|38232564|gb|AAR15079.1| ribonucleotide reductase R2 subunit variant [Aedes albopictus]
          Length = 219

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 22/208 (10%)

Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
           +  LFN    +P +  KA+WAL +  +              Q    +  V +   EG++F
Sbjct: 20  KRYLFNAIDNLPCVKKKADWALNWISS-------------KQANFGERVVAFAAVEGIFF 66

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
              FA I  L +   M G+    + I RDE LH +F   +   +         K  Q++ 
Sbjct: 67  SGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFKYLVQ-------KPSQERV 119

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
             ++ EA L+E  +  + +P   +G+N     QY++F+A+R   ++G++ ++  T+NPF 
Sbjct: 120 IEIIREAVLIEQEFLTKALPVDLLGMNCELMSQYIEFVADRLLLELGIDKIYN-TKNPFS 178

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +M E I L+ + NFFE +V EYQ+   +
Sbjct: 179 FM-EFISLEGKTNFFEKKVGEYQKWGVM 205


>gi|312883652|ref|ZP_07743377.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309368875|gb|EFP96402.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 323

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 123/331 (37%), Gaps = 32/331 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P ++P+ +D+  WK    LT+DE+++  R        
Sbjct: 13  NWNRIQDNKDLEIWNRLTVNFWLPEKIPLSNDIQSWKQ---LTEDEQVLTTRVFTGLTLL 69

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++        + +    P     L   AF EAVH+ ++  I ++L       E F    
Sbjct: 70  DTIQNTVGAPVLMKDARTPHEEAVLSNIAFMEAVHARSYSSIFSTLCTTPQIDEAFRWAE 129

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L      S P                  +  V  E   FY+GF   + 
Sbjct: 130 ENPLLQQKAKIILDDYLQDSGPLEKK--------------IASVFLESFLFYSGFYLPMH 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          E      ++ + K+ ++L     
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLGYQELDEARQEQLKDKAYSLLLSLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327
           +E  Y      +  VGL     + ++ + AN+    +G E LF       NP   M+ + 
Sbjct: 236 IECQYTESLYDQ--VGLT-EDVKHFLHYNANKALMNLGFEALFPQELCNVNP-AIMAALS 291

Query: 328 -DLKKEKNFFETRVTEYQQGAEL-----KWD 352
            +  +  +FF    + Y  G  +      WD
Sbjct: 292 PNSDENHDFFSGSGSSYVIGKAVVTEDEDWD 322


>gi|82492124|gb|ABB77921.1| ribonucleotide reductase beta chain [Environmental halophage 1
           AAJ-2005]
          Length = 358

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 141/349 (40%), Gaps = 20/349 (5%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
             +S     E++ + D +  +   +    L P +Y    +   +  N++W+  E     D
Sbjct: 17  NFMSEANKPERKDDTDSQSDIF--TARQHLKPYEYTDFLDYVDAVRNSYWVHDEFNFDGD 74

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  ++     T  E+  IKR +   A  E          IY  +   E     +  A  E
Sbjct: 75  IQDYRVNT--TPAEQTTIKRTMLAIAQIEV-QVKTFWSDIYEDMPKAEVGNVGMTFAESE 131

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
             H   + +++  LG+++   F    EVP++  +  +  +Y +         G+ +  QE
Sbjct: 132 VRHMDAYSHLLDVLGIEDE--FEQITEVPAVQQRIEYLDEYLE--------MGSSENKQE 181

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            +  + +F    E +  ++ F  + S  +   K  GIA   +   ++E +H  FG +++ 
Sbjct: 182 SVMGILMFSTFVEHVSLFSQFLIMTSFDKHEKKFKGIANAVEATSKEEQIHGLFGQELVE 241

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANR 302
            I+ ENP L+  +F  + +    +A   E       +  G +  L     + +++   N+
Sbjct: 242 TIREENPDLFDDDFTDEIQDACQQAYEAESEILDWILEDGELDFLPREHIDAFLKDRFNQ 301

Query: 303 RCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQGAE 348
                G++P+F   E+      W  E I + KE +FF  R T Y +  +
Sbjct: 302 SLDNAGVDPVFDPDEDVVDETRWFDEDIMMTKENDFFSKRSTTYNKHTQ 350


>gi|227876446|ref|ZP_03994558.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35243]
 gi|269976014|ref|ZP_06183018.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris 28-1]
 gi|306817405|ref|ZP_07451150.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35239]
 gi|307700420|ref|ZP_07637459.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris FB024-16]
 gi|227842987|gb|EEJ53184.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35243]
 gi|269935842|gb|EEZ92372.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris 28-1]
 gi|304649846|gb|EFM47126.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35239]
 gi|307614405|gb|EFN93635.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris FB024-16]
          Length = 322

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 119/323 (36%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P ++P+ +D+  WK+   L  DE+LM  R        
Sbjct: 13  NWNDIEDEKDLEVWDRLTGNFWLPEKIPLSNDIPSWKT---LNADEKLMTNRVFTGLTLL 69

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++      +++      P         AF E+VH+ ++  I ++L   E   E F    
Sbjct: 70  DTIQGTVGAVSLIPDSRTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFQWSE 129

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
               +  KA+  L Y     +                       + E   FY+GF   + 
Sbjct: 130 NNEFLQKKAHIVLDYYHGNDAEKRKV---------------ASTMLESFLFYSGFYAPMY 174

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          E+     +E +  + ++L +   
Sbjct: 175 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKFQVAMRESSSSRQEELRDYTYSLLTDLYD 234

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y         +GL     ++++ + AN+    +G E LF   E   NP    +   
Sbjct: 235 NEVLYTETLY--DTLGLT-EDVKKFLHYNANKALMNLGYEALFPPEEIDVNPAILAALSP 291

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
             ++  +FF    + Y  G   +
Sbjct: 292 AAEENHDFFSGSGSSYTIGTAEE 314


>gi|326381484|ref|ZP_08203178.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199731|gb|EGD56911.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 333

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P +VP+ +D+  W +   LTD E+ +  R     
Sbjct: 24  NWNRVQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTDYEKTLTMRVFTGL 77

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L   +   E F 
Sbjct: 78  TLLDTIQGTVGAISLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFR 137

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   + Y +                       V   + E   FY+GF  
Sbjct: 138 WSEENEYLQRKAQIVMDYYRGDD---------------PLKRKVASTLLESFLFYSGFYL 182

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 183 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLEVQTPERRQELKDYTFELLFE 242

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VGL+    ++++++ AN+    +G E +F   E   NP    +
Sbjct: 243 LYDNETDYTEALY--DEVGLS-EDVKKFLRYNANKALMNLGYEAMFPKDETDVNPAILSA 299

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 300 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 332


>gi|325291517|ref|YP_004277381.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
           sp. H13-3]
 gi|325059370|gb|ADY63061.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
           sp. H13-3]
          Length = 324

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 122/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W +   L  +E+ +  R     
Sbjct: 15  NWNRIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWGT---LKPEEQTLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +    + P     L   +F EAVH+ ++  I ++L       + + 
Sbjct: 69  TLLDTIQNGVGSVRLMADSATPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   ++   + +                  + V  V  E   FY+GF  
Sbjct: 129 WSEENEFLQRKSALIMREYDSGN---------------PLKMKVASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMFWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALERLGEAEKQEIKDFAFDLLLE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y  +      VGL     +Q++ + AN+    +G E LF       NP    +
Sbjct: 234 LYDNEAKYTQDLYDG--VGLT-EDVKQFLHYNANKALMNLGYEALFPPEACRVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|307944765|ref|ZP_07660103.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp.
           TrichSKD4]
 gi|307771979|gb|EFO31202.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp.
           TrichSKD4]
          Length = 329

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 67/334 (20%), Positives = 123/334 (36%), Gaps = 35/334 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +D+  W +   L  DE+ +  R     
Sbjct: 19  NWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSWAT---LHPDEQQLTIRVFTGL 72

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++        +      P     L   AF EAVH+ ++  + ++L       E F 
Sbjct: 73  TLLDTIQNTVGAPTLMPDALTPHEEAVLTNIAFMEAVHARSYSSVFSTLCQTADVDEAFR 132

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   + AK+   L       SP                  V  V  E   FY+GF  
Sbjct: 133 WSEENEHLQAKSRLILDEYGAAGSP--------------LRKKVASVFLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +++        +E +  + +++ +
Sbjct: 179 PMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRMQETLSEAERQEIKDFAFSLMFD 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
              +E  Y         VGL     + ++ + AN+    +G E LF  +    NP   M+
Sbjct: 239 LYEIEGKYTESLYDG--VGLT-EDVKHFLHYNANKALMNLGYEALFPDSVCQVNP-AIMA 294

Query: 325 EVI-DLKKEKNFFETRVTEYQQGAEL-----KWD 352
            +  +  +  +FF    + Y  G  +      WD
Sbjct: 295 ALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 328


>gi|254471227|ref|ZP_05084629.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio
           sp. JE062]
 gi|211959373|gb|EEA94571.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio
           sp. JE062]
          Length = 325

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/334 (20%), Positives = 125/334 (37%), Gaps = 35/334 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W       +N W+P +VP+ +D+  W S   LT +E+ +  R     
Sbjct: 15  NWNRLQDDKDLEIWN---RLTSNFWLPEKVPLSNDVQSWAS---LTPEEQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       A+      P     L   AF EAVH+ ++  + ++L       + F 
Sbjct: 69  TLLDTIQNTVGAPALMADAVTPHEEAVLTNIAFMEAVHARSYSSVFSTLCRTAEVDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   + AK+   L+     SSP                  +  V  E   FY+GF  
Sbjct: 129 WSEENEFLQAKSRLILEEYNATSSPLKKK--------------IASVFLESFLFYSGFYL 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +           E +  + T+L +
Sbjct: 175 PMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLERLSEAERTEIKDFAFTLLFD 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
              LE  Y  +      +GL     + ++ +  N+    +G E LF  T    NP   M+
Sbjct: 235 LYDLETKYTEDLY--DPLGLT-EDVKHFLHYNGNKALQNLGFEGLFPETICQVNP-AIMA 290

Query: 325 EVI-DLKKEKNFFETRVTEYQQGAEL-----KWD 352
            +  +  +  +FF    + Y  G  +      WD
Sbjct: 291 SLSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 324


>gi|254820788|ref|ZP_05225789.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           intracellulare ATCC 13950]
          Length = 324

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 68/333 (20%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +DL  W +   LT  E+ M  R     
Sbjct: 15  NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDLPSWGT---LTAHEKQMTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       + F 
Sbjct: 69  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  KA   +QY +                       V   + E   FY+GF  
Sbjct: 129 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDARKQELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP    +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323


>gi|227494314|ref|ZP_03924630.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
           coleocanis DSM 15436]
 gi|226832048|gb|EEH64431.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
           coleocanis DSM 15436]
          Length = 322

 Score =  146 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 122/336 (36%), Gaps = 34/336 (10%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N+L   K    W+       N W+P ++P+ +D+  W +   L  +E+ M  +  
Sbjct: 10  EAINWNKLEDDKDLEVWD---RLTGNFWLPEKIPLSNDIPSWNT---LRPEEQDMTNKVF 63

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
                 ++L      +++      P     L   AF E+VH+ ++  I ++L   +   E
Sbjct: 64  TNLTLLDTLQGTVGAISLISDARTPHEEAVLTNIAFMESVHARSYSSIFSTLLSTQEINE 123

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F    E   +  KA     Y                             + E   FY+G
Sbjct: 124 VFRWSEENEQVQRKAEIVNSYYVADDPLKKKV---------------ASTMLESFLFYSG 168

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +      K+   A+  + I+RDE++H  +          E+     +E +  +  +
Sbjct: 169 FYAPMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLGVRESSEARQQELKDYTFDL 228

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFP 321
           L+E    E  +  +      +GL     ++++++ AN+    +G E LF       NP  
Sbjct: 229 LYELYDNEEQFTEDLY--DPLGLT-EDVKKFLRYNANKALMNLGYEALFPAESCDVNPAI 285

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
             S   +  +  +FF    + Y  G      +  WD
Sbjct: 286 LASLSPNADENHDFFSGSGSSYVIGDIEDTQDEDWD 321


>gi|256820037|ref|YP_003141316.1| ribonucleotide reductase [Capnocytophaga ochracea DSM 7271]
 gi|315225453|ref|ZP_07867266.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea
           F0287]
 gi|256581620|gb|ACU92755.1| ribonucleotide reductase [Capnocytophaga ochracea DSM 7271]
 gi|314944551|gb|EFS96587.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea
           F0287]
          Length = 319

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 72/320 (22%), Positives = 120/320 (37%), Gaps = 23/320 (7%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    E   +   + W+ +EV    D+  +KS   LT  E+  +KR L   A
Sbjct: 7   RENYKPFEYPEVMEFVNAMHKSFWVHSEVEFTADIQDFKS--ELTPVEKEAVKRALLGIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y     PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QVEVSV-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLL 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           EVP    ++N   +Y                 +  ++ +  F ++ E    ++ FA ILS
Sbjct: 122 EVPVFKERSNVLKEYL------------AKNRENAMERILFFTLIIENASLFSQFATILS 169

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    +  +A    +   DE LH N GI ++ +I  ENP +  K  ++ + T +    
Sbjct: 170 FTRFKGFLKNVANIIAWTSVDEQLHANAGIYILKKIFEENPEMKAKA-EEDATTFIRSYI 228

Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSE 325
            LE         +G +   +      YM++  +    Q+GL   F  +     P  W  E
Sbjct: 229 TLEDKMLDWIFEQGELEFFSKKDLSNYMRYRLDDSLTQLGLGKPFGISGEEAKPMMWFEE 288

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +   +  +FF  R T Y +
Sbjct: 289 EVFSNELDDFFAKRPTAYTK 308


>gi|47566242|ref|ZP_00237270.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           G9241]
 gi|47556795|gb|EAL15126.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           G9241]
          Length = 322

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 127/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+  E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKQEQVAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|194433043|ref|ZP_03065326.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
           dysenteriae 1012]
 gi|194418770|gb|EDX34856.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
           dysenteriae 1012]
 gi|320180201|gb|EFW55137.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           ATCC 9905]
 gi|332088601|gb|EGI93714.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           dysenteriae 155-74]
          Length = 319

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 62/326 (19%), Positives = 120/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKITDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   + P    +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKIPLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|52143985|ref|YP_082843.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
           E33L]
 gi|228984529|ref|ZP_04144706.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229155020|ref|ZP_04283134.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           ATCC 4342]
 gi|51977454|gb|AAU19004.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           E33L]
 gi|157955324|gb|ABW06037.1| NrdF [Bacillus thuringiensis serovar tochigiensis]
 gi|228628578|gb|EEK85291.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           ATCC 4342]
 gi|228775232|gb|EEM23621.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 322

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|318606878|emb|CBY28376.1| ribonucleotide reductase of class Ib (aerobic),beta subunit
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 323

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 120/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W     LT DE+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSW---AKLTADEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +     E +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                            V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYNNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                ++   A+  + I+RDE++H  +      +   +  +   +E +  +  +L +   
Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKLDNNRRQEIKNFTFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            EI Y         VG      ++++ + AN+    +G E LF  ++   NP    +   
Sbjct: 236 NEIHYTESLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|332162772|ref|YP_004299349.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325667002|gb|ADZ43646.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 323

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 120/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W     LT DE+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSW---AKLTADEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +     E +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                            V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYNNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                ++   A+  + I+RDE++H  +      +   +  +   +E +  +  +L +   
Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKLDNNRRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            EI Y         VG      ++++ + AN+    +G E LF  ++   NP    +   
Sbjct: 236 NEIHYTESLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|260426338|ref|ZP_05780317.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp.
           SE45]
 gi|260420830|gb|EEX14081.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp.
           SE45]
          Length = 324

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 121/330 (36%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +D+  W +   LT +E+ +  R     
Sbjct: 15  NWNRLQDDKDLEVWN---RLTVNFWLPEKVPLSNDVPSWAT---LTPEEQRLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       A+      P     L   AF EAVH+ ++  I ++L       E F 
Sbjct: 69  TLLDTIQNAVGAPAMMPDAQTPHEEAVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P + AKA   L      + P                  V  V  E   FY+GF  
Sbjct: 129 WSDENPHLQAKARAILGTYAPGADP--------------LKRKVASVFLESFLFYSGFYL 174

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 175 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRAMERETAERRQELKDYAFGLLFE 234

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              +E  Y  E      +GL     + ++ + AN+    +G E LF       NP   ++
Sbjct: 235 LYEIEGHYTEELYDD--LGLT-EEVKSFLHYNANKALQNLGFEALFPPEACEVNP-AILA 290

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
            +    +  +FF    + Y   +    + D
Sbjct: 291 ALSPDSENHDFFSGSGSSYVIGRAVATEDD 320


>gi|308177564|ref|YP_003916970.1| ribonucleoside-diphosphate reductase subunit beta [Arthrobacter
           arilaitensis Re117]
 gi|307745027|emb|CBT75999.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter
           arilaitensis Re117]
          Length = 324

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 132/349 (37%), Gaps = 37/349 (10%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +++ + +K       + N++   K    W       NN W+P +VP+ +D+  W +   
Sbjct: 2   TEKIQLTNK---VEAINWNRIQDDKDVEVWN---RLVNNFWLPEKVPLSNDIQSWGT--- 52

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT+DE+L+  R        ++L      +++      P         AF E+VH+ ++  
Sbjct: 53  LTEDEKLLTMRVFTGLTLLDTLQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSS 112

Query: 134 IITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I ++L   +   E F    E  ++  KA     Y                         +
Sbjct: 113 IFSTLASTKEIDEAFRWSTENVNLQKKAQIIESYYHGED---------------PLKRKI 157

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
              + E   FY+GF   +      K+   A+  + I+RDE++H  +      +       
Sbjct: 158 ASTLLESFLFYSGFYLPMHWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLENETE 217

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
              +E +  +  +++E    E+ Y H+      VGL+    ++++ + AN+    +G E 
Sbjct: 218 ERKQELKDYTFELMYELYENEVQYTHDLY--DPVGLS-EDVKKFLHYNANKALMNLGYEA 274

Query: 312 LFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK-----WD 352
           +F       +P    +   +  +  +FF    + Y  G  +      WD
Sbjct: 275 MFPSTVTDVSPAILAALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323


>gi|238762669|ref|ZP_04623638.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           kristensenii ATCC 33638]
 gi|238698974|gb|EEP91722.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           kristensenii ATCC 33638]
          Length = 323

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 119/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W     LT +E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSW---AKLTAEEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L       E +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCSTPDVDEAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KAN  L++                            V  E   FY+GF   + 
Sbjct: 131 ENIALQKKANIILEHYNNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                ++   A+  + I+RDE++H  +      +   +      +E +  +  +L +   
Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDISRRQEIKNFAYNLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +      VG      ++++ + AN+    +G E LF   +   NP    +   
Sbjct: 236 NEVRYTADLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPADQANVNPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|30261453|ref|NP_843830.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Ames]
 gi|47526645|ref|YP_017994.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49184287|ref|YP_027539.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Sterne]
 gi|49477196|ref|YP_035577.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|65318723|ref|ZP_00391682.1| COG0208: Ribonucleotide reductase, beta subunit [Bacillus anthracis
           str. A2012]
 gi|118476922|ref|YP_894073.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           thuringiensis str. Al Hakam]
 gi|165870361|ref|ZP_02215016.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0488]
 gi|167634337|ref|ZP_02392658.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0442]
 gi|167639338|ref|ZP_02397610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0193]
 gi|170686782|ref|ZP_02878002.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0465]
 gi|170706310|ref|ZP_02896771.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0389]
 gi|177651561|ref|ZP_02934350.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0174]
 gi|190568085|ref|ZP_03020995.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|196035278|ref|ZP_03102683.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           W]
 gi|196046555|ref|ZP_03113780.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           03BB108]
 gi|218902561|ref|YP_002450395.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH820]
 gi|225863317|ref|YP_002748695.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           03BB102]
 gi|227815798|ref|YP_002815807.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. CDC 684]
 gi|228914025|ref|ZP_04077647.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228932735|ref|ZP_04095607.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228945050|ref|ZP_04107411.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229090407|ref|ZP_04221650.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-42]
 gi|229120993|ref|ZP_04250235.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           95/8201]
 gi|229183646|ref|ZP_04310869.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BGSC 6E1]
 gi|229602752|ref|YP_002865867.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0248]
 gi|254682483|ref|ZP_05146344.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. CNEVA-9066]
 gi|254726146|ref|ZP_05187928.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. A1055]
 gi|254733899|ref|ZP_05191613.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740411|ref|ZP_05198102.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Kruger B]
 gi|254753802|ref|ZP_05205837.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Vollum]
 gi|254758897|ref|ZP_05210924.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis str. Australia 94]
 gi|301052993|ref|YP_003791204.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           anthracis CI]
 gi|30255307|gb|AAP25316.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. Ames]
 gi|47501793|gb|AAT30469.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49178214|gb|AAT53590.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. Sterne]
 gi|49328752|gb|AAT59398.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|72414680|emb|CAG28950.1| ribonucleoside-diphosphate reductase class Ib beta chain [Bacillus
           anthracis]
 gi|118416147|gb|ABK84566.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Bacillus thuringiensis str. Al Hakam]
 gi|157955314|gb|ABW06029.1| NrdF [Bacillus thuringiensis serovar finitimus]
 gi|164713856|gb|EDR19378.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0488]
 gi|167512777|gb|EDR88151.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0193]
 gi|167530225|gb|EDR92951.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0442]
 gi|170128844|gb|EDS97710.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0389]
 gi|170669305|gb|EDT20048.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0465]
 gi|172082839|gb|EDT67902.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0174]
 gi|190560819|gb|EDV14794.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis Tsiankovskii-I]
 gi|195991955|gb|EDX55918.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           W]
 gi|196022739|gb|EDX61421.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           03BB108]
 gi|218537212|gb|ACK89610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH820]
 gi|225785957|gb|ACO26174.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           03BB102]
 gi|227004217|gb|ACP13960.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. CDC 684]
 gi|228599889|gb|EEK57486.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BGSC 6E1]
 gi|228662653|gb|EEL18251.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           95/8201]
 gi|228692990|gb|EEL46708.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-42]
 gi|228814719|gb|EEM60979.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228826940|gb|EEM72702.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228845630|gb|EEM90659.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229267160|gb|ACQ48797.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           anthracis str. A0248]
 gi|300375162|gb|ADK04066.1| ribonucleotide-diphosphate reductase beta subunit [Bacillus cereus
           biovar anthracis str. CI]
 gi|324325470|gb|ADY20730.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 322

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|114766102|ref|ZP_01445111.1| ribonucleoside-diphosphate reductase, beta subunit protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114541657|gb|EAU44698.1| ribonucleoside-diphosphate reductase, beta subunit protein
           [Roseovarius sp. HTCC2601]
          Length = 326

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 124/330 (37%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +D+  W +   LT++ER +  R     
Sbjct: 17  NWNRLQDEKDLEVWN---RLTVNFWLPEKVPLSNDVQSWAT---LTEEERQLTIRVFTGL 70

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++  +    A+      P     L   AF EAVH+ ++  I ++L       E F 
Sbjct: 71  TLLDTIQNSVGAPAMMPDCLTPHEESVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAFR 130

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P + AKA   L+     + P                  +  V  E   FY+GF  
Sbjct: 131 WSDENPHLQAKARAVLETYAPEADP--------------LKRKIASVFLESFLFYSGFYL 176

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 177 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLELESPERRQELKDYAFGLLFE 236

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
              +E  Y  E      +GL     + ++ + AN+    +G E LF       NP   ++
Sbjct: 237 LYDIEARYTEELYDG--IGLT-EEVKAFLHYNANKALQNLGFEALFPPEAAEVNP-AILA 292

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
            +    +  +FF    + Y   +    + D
Sbjct: 293 ALSPDSENHDFFSGSGSSYVIGRAVATEDD 322


>gi|261343568|ref|ZP_05971213.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rustigianii DSM 4541]
 gi|282568717|gb|EFB74252.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rustigianii DSM 4541]
          Length = 323

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 115/330 (34%), Gaps = 34/330 (10%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W +   LT  E+ +  R        
Sbjct: 14  NWNRIQDDKDLEVWNRLTTNFWLPEKVPLSNDINSWNT---LTATEKKLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L       E +    
Sbjct: 71  DTIQNTVGAPCLMADAQTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDEAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA   L Y                         V  V  E   FY+GF   + 
Sbjct: 131 ENSALQNKAKIILSYY---------------CDSHPLKKKVASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +           E ++ + ++L +   
Sbjct: 176 WSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLATYNEQQQNEIKEFTFSLLFDLYE 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI--- 327
            EI Y  E      VG +    + ++ + AN+    +G E LF         +S  I   
Sbjct: 236 NEIKYTQELY--DSVGWS-EDVKSFLHYNANKALMNLGYEALFPEA---ITQVSPEILSA 289

Query: 328 ---DLKKEKNFFETRVTEYQ--QGAELKWD 352
              D  +  +FF    + Y   +    + D
Sbjct: 290 LSPDANENHDFFSGSGSSYVIGKAVSTEDD 319


>gi|228926484|ref|ZP_04089556.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228833308|gb|EEM78873.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 322

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AYA E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYAEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|313206313|ref|YP_004045490.1| ribonucleotide reductase [Riemerella anatipestifer DSM 15868]
 gi|312445629|gb|ADQ81984.1| ribonucleotide reductase [Riemerella anatipestifer DSM 15868]
 gi|315023179|gb|EFT36190.1| ribonucleotide reductase [Riemerella anatipestifer RA-YM]
 gi|325336242|gb|ADZ12516.1| ribonucleoside-diphosphate reductase beta chain [Riemerella
           anatipestifer RA-GD]
          Length = 324

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 122/320 (38%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    +   +   + W+ +EV    D+  + S   L   E+  +K  L   A
Sbjct: 7   RINYKPFEYPEVMQYIEAINKSFWVHSEVDFTADIQDFHS--QLEPHEKNAVKNALLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y HL  PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QIEVSV-KTFWGNLYNHLPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNNE--FLNVI 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P+I  + ++                     +E++  L +F ++ E +  ++ FA ILS
Sbjct: 122 ENPAIRKRIDFLT--------DVLRNSNSSTPKEYVSSLLLFSILIENVSLFSQFAIILS 173

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE +H N GI +IN+IK E P L  +E  +    ++  + 
Sbjct: 174 FTRFKGYMKNVSNIIAWTSVDEQIHANAGIYIINKIKEEQPELLQEEDIEAIYNIVKTSV 233

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
            LE          G    L+      +M++  +    +IG+  +F  TE    P  W  E
Sbjct: 234 ELEAEILDWIFEMGDLDHLSKKQLLSFMKYRIDDSLKRIGMASMFNITEEEYKPMVWFEE 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +      +FF  R  +Y +
Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313


>gi|184201049|ref|YP_001855256.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria
           rhizophila DC2201]
 gi|183581279|dbj|BAG29750.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria
           rhizophila DC2201]
          Length = 326

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 128/342 (37%), Gaps = 46/342 (13%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++   K    W+      +N W+P +VP+ +D+  WK+   LT +E+ +  +  
Sbjct: 14  EAINWNRVQDEKDTEVWD---RLTSNFWLPEKVPLSNDVQSWKT---LTAEEQDLTMKVF 67

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGE 144
                 +++      +++                AF E+VH+ ++  I ++L       E
Sbjct: 68  TGLTLLDTIQGTVGAVSLIPDAKTLHEEAVYTNIAFMESVHAKSYSSIFSTLSSMKQIDE 127

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            F   +E   +  KA+  L+Y +                           + E   FY+G
Sbjct: 128 AFRWSKENEHLQRKADIVLRYYKGDDPLKKKV---------------ASTLLESFLFYSG 172

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +      K+   A+  + I+RDE++H  +      +  ++      +E +  +  +
Sbjct: 173 FYLPMYFSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLLQESPQRQQELKDYTYDL 232

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           L E    E+AYA        VG      ++++ + AN+  + +G E LF         M+
Sbjct: 233 LDELYENEVAYAEALY--DSVGWT-EDVKKFLHYNANKALNNLGYEALFPRE------MT 283

Query: 325 EVI---------DLKKEKNFFETRVTEYQQGAELK-----WD 352
           +V          +  +  +FF    + Y  G  +      WD
Sbjct: 284 DVSPAILSSLSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 325


>gi|238750475|ref|ZP_04611976.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei
           ATCC 43380]
 gi|238711406|gb|EEQ03623.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei
           ATCC 43380]
          Length = 323

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 121/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W +   LT +E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +     + +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                            V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYHNEDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +  +   +E +  +  +L +   
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNNRRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +   K  VG      + ++ + AN+    +G E LF   +   NP    +   
Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKSFLHYNANKALMNLGYEALFPANQAEVNPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVITEDEDWD 322


>gi|123441277|ref|YP_001005264.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088238|emb|CAL11027.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 323

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 120/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W     LT DE+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSW---AKLTADEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +     E +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                            V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYNNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                ++   A+  + I+RDE++H  +      +   +  +   +E +  +  +L +   
Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNNRRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            EI Y         VG      ++++ + AN+    +G E LF  ++   NP    +   
Sbjct: 236 NEIHYTESLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|15841457|ref|NP_336494.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis CDC1551]
 gi|57116932|ref|YP_177853.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Rv]
 gi|148661790|ref|YP_001283313.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|148823195|ref|YP_001287949.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis F11]
 gi|167970496|ref|ZP_02552773.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|215404217|ref|ZP_03416398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|215411671|ref|ZP_03420467.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215427336|ref|ZP_03425255.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T92]
 gi|215430897|ref|ZP_03428816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|215446189|ref|ZP_03432941.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|218753694|ref|ZP_03532490.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis GM 1503]
 gi|219557941|ref|ZP_03537017.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T17]
 gi|253798971|ref|YP_003031972.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis KZN 1435]
 gi|254232151|ref|ZP_04925478.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis C]
 gi|254364798|ref|ZP_04980844.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254551002|ref|ZP_05141449.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260186953|ref|ZP_05764427.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis CPHL_A]
 gi|260201080|ref|ZP_05768571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T46]
 gi|289443470|ref|ZP_06433214.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           tuberculosis T46]
 gi|289447597|ref|ZP_06437341.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis CPHL_A]
 gi|289554242|ref|ZP_06443452.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis KZN 605]
 gi|289570077|ref|ZP_06450304.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis T17]
 gi|289746076|ref|ZP_06505454.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289750559|ref|ZP_06509937.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis T92]
 gi|289754082|ref|ZP_06513460.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289758093|ref|ZP_06517471.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|289762136|ref|ZP_06521514.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis GM 1503]
 gi|294996911|ref|ZP_06802602.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 210]
 gi|297634550|ref|ZP_06952330.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN 4207]
 gi|297731538|ref|ZP_06960656.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN R506]
 gi|298525478|ref|ZP_07012887.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306776213|ref|ZP_07414550.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu001]
 gi|306779994|ref|ZP_07418331.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu002]
 gi|306784744|ref|ZP_07423066.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu003]
 gi|306789101|ref|ZP_07427423.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu004]
 gi|306793436|ref|ZP_07431738.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu005]
 gi|306797819|ref|ZP_07436121.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu006]
 gi|306803700|ref|ZP_07440368.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu008]
 gi|306808274|ref|ZP_07444942.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu007]
 gi|306968097|ref|ZP_07480758.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu009]
 gi|306972322|ref|ZP_07484983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu010]
 gi|307080033|ref|ZP_07489203.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu011]
 gi|307084607|ref|ZP_07493720.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu012]
 gi|313658871|ref|ZP_07815751.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN V2475]
 gi|1710397|sp|Q10840|RIR2A_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta
           nrdF1; AltName: Full=Ribonucleotide reductase R2-1 small
           subunit; AltName: Full=Ribonucleotide reductase small
           subunit 1
 gi|13881697|gb|AAK46308.1| ribonucleoside-diphosphate reductase R2-1, beta subunit
           [Mycobacterium tuberculosis CDC1551]
 gi|38490297|emb|CAE55444.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
           [Mycobacterium tuberculosis H37Rv]
 gi|124601210|gb|EAY60220.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis C]
 gi|134150312|gb|EBA42357.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148505942|gb|ABQ73751.1| ribonucleoside-diphosphate reductase subunit beta NrdF1
           [Mycobacterium tuberculosis H37Ra]
 gi|148721722|gb|ABR06347.1| ribonucleoside-diphosphate reductase beta subunit nrdF1
           [Mycobacterium tuberculosis F11]
 gi|253320474|gb|ACT25077.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis KZN 1435]
 gi|289416389|gb|EFD13629.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           tuberculosis T46]
 gi|289420555|gb|EFD17756.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis CPHL_A]
 gi|289438874|gb|EFD21367.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis KZN 605]
 gi|289543831|gb|EFD47479.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis T17]
 gi|289686604|gb|EFD54092.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289691146|gb|EFD58575.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis T92]
 gi|289694669|gb|EFD62098.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289709642|gb|EFD73658.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
           [Mycobacterium tuberculosis GM 1503]
 gi|289713657|gb|EFD77669.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|298495272|gb|EFI30566.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308215325|gb|EFO74724.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu001]
 gi|308327098|gb|EFP15949.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu002]
 gi|308330477|gb|EFP19328.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu003]
 gi|308334311|gb|EFP23162.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu004]
 gi|308338113|gb|EFP26964.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu005]
 gi|308341805|gb|EFP30656.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu006]
 gi|308345291|gb|EFP34142.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu007]
 gi|308349595|gb|EFP38446.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu008]
 gi|308354222|gb|EFP43073.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu009]
 gi|308358200|gb|EFP47051.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu010]
 gi|308362132|gb|EFP50983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu011]
 gi|308365786|gb|EFP54637.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis SUMu012]
 gi|323719468|gb|EGB28595.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis CDC1551A]
 gi|326903590|gb|EGE50523.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis W-148]
 gi|328458726|gb|AEB04149.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis KZN 4207]
          Length = 322

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 126/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+LL  K    WE       N W+P ++P+ +DLA W++   L+  E+    R     
Sbjct: 13  NWNRLLDAKDLQVWE---RLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++  A    +A+      P     L   AF E+VH+ ++  I ++L   +   + F+
Sbjct: 67  TLLDTAQATVGAVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFD 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  KA   + Y +                          V+ E   FY+GF  
Sbjct: 127 WSEQNPYLQRKAQIIVDYYRGDD---------------ALKRKASSVMLESFLFYSGFYL 171

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       + ++ +  +LH 
Sbjct: 172 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHT 231

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI YAH+      +G        YM++ AN+    +G +P F       NP    +
Sbjct: 232 LYANEIDYAHDLY--DELGWT-DDVLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAA 288

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
                 +  +FF    + Y  G      +  WD
Sbjct: 289 LDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 321


>gi|319408170|emb|CBI81823.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
           schoenbuchensis R1]
          Length = 324

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 122/342 (35%), Gaps = 31/342 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            +  K  +    + N+L   K    W        N W+P +VP+ +D+  W S   LT++
Sbjct: 3   RISTKNPVICAVNWNKLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTEE 56

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER +  R        +++      +++            L   AF EAVH+ ++  I ++
Sbjct: 57  ERKLTIRVFTGLTLLDTVQNTVGAISLMADAITEHEEAVLTNIAFMEAVHARSYSSIFST 116

Query: 138 LGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L       + F    E  ++  KA   L+  +                           +
Sbjct: 117 LCSTAEVDDAFRWSEENANLQKKATLVLERYEASDPLKKKI---------------ASTL 161

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      K+   A+  + I+RDE++H  +          +      +
Sbjct: 162 LESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYVGYKFQLGFAKLDEAKKQ 221

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +  +  ML +   +E  Y  +      +GL     + ++ + AN+    +G EPLF  
Sbjct: 222 EIKDFAFNMLFDLYSIECKYTEDLY--DAIGLT-EDVKVFIHYNANKALMNLGFEPLFPP 278

Query: 316 T---ENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
                NP    +   +  +  +FF    + Y   +      D
Sbjct: 279 EVCRVNPAILAALSPNSDENHDFFSGSGSSYVIGKAVATTDD 320


>gi|283457964|ref|YP_003362570.1| ribonucleotide reductase subunit beta [Rothia mucilaginosa DY-18]
 gi|283133985|dbj|BAI64750.1| ribonucleotide reductase, beta subunit [Rothia mucilaginosa DY-18]
          Length = 325

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 127/336 (37%), Gaps = 34/336 (10%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++   K    W+       N W+P +VP+ +D+  WK+   LT++E+ +  R  
Sbjct: 13  EAINWNRIEDEKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT---LTEEEKQLTMRVF 66

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
                 +++      +++                AF E+VH+ ++  I ++L   +   E
Sbjct: 67  TGLTLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDE 126

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            F    E   +  KA   L Y                             + E   FY+G
Sbjct: 127 AFRWASENEHLQKKAKIVLSYYTGDDPLKKKV---------------ASTLLESFLFYSG 171

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +      K+   A+  + I+RDE++H  +      Q   +       E ++ +  +
Sbjct: 172 FYLPMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKFQQGLAKESAERQAELKEYTFNL 231

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWM 323
           L+E    E+AY H       VG +    ++++ + AN+    +G EP+F  +  N  P +
Sbjct: 232 LYELYENEVAYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEPMFPASVTNVSPAI 288

Query: 324 SEVI--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +  +FF    + Y  G  +      WD
Sbjct: 289 LSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324


>gi|31793160|ref|NP_855653.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           bovis AF2122/97]
 gi|224990358|ref|YP_002645045.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|260205258|ref|ZP_05772749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis K85]
 gi|289574653|ref|ZP_06454880.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis K85]
 gi|31618751|emb|CAD94705.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1
           (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
           [Mycobacterium bovis AF2122/97]
 gi|224773471|dbj|BAH26277.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|289539084|gb|EFD43662.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
           [Mycobacterium tuberculosis K85]
          Length = 322

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 126/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+LL  K    WE       N W+P ++P+ +DLA W++   L+  E+    R     
Sbjct: 13  NWNRLLDAKDLQVWE---RLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++  A    +A+      P     L   AF E+VH+ ++  I ++L   +   + F+
Sbjct: 67  TLLDTAQATVGAVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFD 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  KA   + Y +                          V+ E   FY+GF  
Sbjct: 127 WSEQNPYLQRKAQIIVDYYRGDD---------------ALKRKASSVMLESFLFYSGFYL 171

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       + ++ +  +LH 
Sbjct: 172 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHT 231

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI YAH+      +G        YM++ AN+    +G +P F       NP    +
Sbjct: 232 LYANEIDYAHDLY--DELGWT-DDVLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAA 288

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
                 +  +FF    + Y  G      +  WD
Sbjct: 289 LDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 321


>gi|228990454|ref|ZP_04150419.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           pseudomycoides DSM 12442]
 gi|228996556|ref|ZP_04156195.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           Rock3-17]
 gi|229004206|ref|ZP_04162007.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           Rock1-4]
 gi|228757067|gb|EEM06311.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           Rock1-4]
 gi|228763188|gb|EEM12096.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           Rock3-17]
 gi|228768980|gb|EEM17578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           pseudomycoides DSM 12442]
          Length = 322

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/309 (24%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E+++ KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIVYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   E+F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFEWVDSHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRRLLKPQVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAEFSAEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPRFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|229102053|ref|ZP_04232765.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-28]
 gi|228681373|gb|EEL35538.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-28]
          Length = 322

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TRYYRRLLKPQVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  Q+  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFAELSAEDQQEVQKETQVLLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VDDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|229084444|ref|ZP_04216723.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-44]
 gi|228698872|gb|EEL51578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-44]
          Length = 322

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 127/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSREEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDSHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P                  V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRRLLKPQVAKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTDEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEEVNRFVRYNANKGLMNLGLEPRFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|324111310|gb|EGC05292.1| ribonucleotide reductase [Escherichia fergusonii B253]
          Length = 319

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYT 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  S+  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENASLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|255327220|ref|ZP_05368295.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
           mucilaginosa ATCC 25296]
 gi|255295838|gb|EET75180.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
           mucilaginosa ATCC 25296]
          Length = 325

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 127/336 (37%), Gaps = 34/336 (10%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++   K    W+       N W+P +VP+ +D+  WK+   LT++E+ +  R  
Sbjct: 13  EAINWNRIEDEKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT---LTEEEKQLTMRVF 66

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
                 +++      +++                AF E+VH+ ++  I ++L   +   E
Sbjct: 67  TGLTLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDE 126

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            F    E   +  KA   L Y                             + E   FY+G
Sbjct: 127 AFRWAAENEHLQKKAKIVLSYYTGDDPLKKKV---------------ASTLLESFLFYSG 171

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +      K+   A+  + I+RDE++H  +      +   +       E ++ +  +
Sbjct: 172 FYLPMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKESAERQAELKEYTFNL 231

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWM 323
           L+E    E+AY H       VG +    ++++ + AN+    +G EP+F  T  N  P +
Sbjct: 232 LYELYENEVAYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEPMFPATVTNVSPAI 288

Query: 324 SEVI--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +  +FF    + Y  G  +      WD
Sbjct: 289 LSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324


>gi|203454817|ref|YP_002225133.1| gp256 [Mycobacterium phage Myrna]
 gi|197311865|gb|ACH62223.1| gp256 [Mycobacterium phage Myrna]
          Length = 322

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 123/338 (36%), Gaps = 31/338 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           +  L    + N+++  K    W       NN W+P ++P+ +D+  W     LT++ERL+
Sbjct: 5   EHTLTRAINWNRVIDEKDAEVWN---RLTNNFWLPEKIPVSNDVQSWHQ---LTEEERLI 58

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
             R        +++      +++      P         AF E+VH+ ++  I ++L   
Sbjct: 59  TMRVFTGLTMLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHARSYSNIFSTLCST 118

Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
           +     F    E  ++  KA   L Y                         V   + EG 
Sbjct: 119 KEIDAAFRWSEENANLQKKAEIVLSYYNGDD---------------PLKRKVASTLLEGF 163

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            FY+GF   +      K+   A+  + I+RDE++H  +      +   +      +E + 
Sbjct: 164 LFYSGFYLPMFWSSRGKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLEKETKARQQELKD 223

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYT 316
            +  +L E    E  Y  +       G      ++++++  N+    +G + LF      
Sbjct: 224 YTYELLFELFDNEQEYTQDLY--DATGQT-EDVKKFLRYNGNKALQNLGYDALFSRSDCD 280

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEY--QQGAELKWD 352
            NP    +      +  +FF    + Y   +G   + D
Sbjct: 281 VNPAILSALSPGGDENHDFFSGSGSTYVMAKGVVTEDD 318


>gi|86148040|ref|ZP_01066342.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
           MED222]
 gi|85834173|gb|EAQ52329.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
           MED222]
          Length = 320

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 119/331 (35%), Gaps = 32/331 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+++  K    W        N W+P +VP+ +D+  WK    LT++E+ +  R     
Sbjct: 10  NWNRMIDGKDLEIWN---RLTVNFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++       A+      P     L   AF EAVH+ ++  + ++L       E F 
Sbjct: 64  TLLDTIQNTVGAPALMEDARTPHEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFR 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L        P                  V  V  E   FY+GF  
Sbjct: 124 WAEENPLLQKKAQIILDDYLAEGDPLKKK--------------VASVFLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +                    + ++ +++  
Sbjct: 170 PMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAYQSLSEEEQARVKDEAYSLMFS 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
              +E  Y         VGL     + ++ + AN+    +G E LF       NP   M+
Sbjct: 230 LYEIETQYTESLY--DPVGLT-EDVKHFLHYNANKALMNLGFEALFPDELCQVNP-AIMA 285

Query: 325 EVI-DLKKEKNFFETRVTEYQ--QGAELKWD 352
            +  +  +  +FF    + Y   +    + D
Sbjct: 286 ALSPNADENHDFFSGSGSSYVIGKAVATEDD 316


>gi|218690804|ref|YP_002399016.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           ED1a]
 gi|218428368|emb|CAR09297.2| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli ED1a]
          Length = 319

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      +   + ++ + AN+    +G EPLF       NP  + +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAIFAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|212712928|ref|ZP_03321056.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM
           30120]
 gi|212684406|gb|EEB43934.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM
           30120]
          Length = 323

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 116/330 (35%), Gaps = 34/330 (10%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P ++P+ +D   W +   L  DE+ +  R        
Sbjct: 14  NWNRIQDDKDLEVWNRLTSNFWLPEKIPLSNDTVSWNT---LKTDEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L    D  E +    
Sbjct: 71  DTIQNTVGAPCLMEDAQTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTVDVDEAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA   L Y                         V  V  E   FY+GF   + 
Sbjct: 131 ENTALQNKAKIILSYY---------------CDSHPLKKKVASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +           E +  + ++L +   
Sbjct: 176 WSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKALAHYSEQERNEIKDFTFSLLLDLYE 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI--- 327
            EI Y  E      VG +    + ++ + AN+    +G E LF  +      +S  I   
Sbjct: 236 NEIKYTQELYDG--VGWS-EDVKSFLHYNANKALMNLGYEALFPDS---ITQVSPEILSA 289

Query: 328 ---DLKKEKNFFETRVTEYQ--QGAELKWD 352
              D  +  +FF    + Y   +    + D
Sbjct: 290 LSPDANENHDFFSGSGSSYVIGKAVSTEDD 319


>gi|229095937|ref|ZP_04226913.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-29]
 gi|229114891|ref|ZP_04244304.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock1-3]
 gi|228668583|gb|EEL24012.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock1-3]
 gi|228687447|gb|EEL41349.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock3-29]
          Length = 322

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TRYYRRLLKPQVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  Q+  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VDDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|146301802|ref|YP_001196393.1| ribonucleotide reductase [Flavobacterium johnsoniae UW101]
 gi|146156220|gb|ABQ07074.1| ribonucleotide reductase [Flavobacterium johnsoniae UW101]
          Length = 324

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/320 (21%), Positives = 124/320 (38%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    +   +    +W+ TEV    D   +     L+  E+  +K +L   A
Sbjct: 7   RVNYKPFEYPEVLQFTEAINKAYWVHTEVDFTADTQDFH--AHLSLAEKTAVKNSLLAIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E     +    IY H   PE        A  E  HS  +  ++  LG ++   F    
Sbjct: 65  QIEV-AVKSFWGNIYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDE--FEKLL 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +VP I  + ++       LS+    T ++D   +++  L +F ++ E +  ++ FA +LS
Sbjct: 122 DVPVIRRRVDY-------LSNVLKDTKSQDNR-KYMVSLILFSILIENVSLFSQFAILLS 173

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  ++    +   DE +H N GI +IN+I+ E P  + +E     R  + ++ 
Sbjct: 174 FTRFKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDYFDEETLALVRETVKDSI 233

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
            +E         +G    +       +M+F  +    QI +  +F           W  E
Sbjct: 234 AVESDILDWIFEEGEIESIKKGDLVNFMKFRIDESLKQINIPVIFDVKVEDYKALAWFEE 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +      +FF  R  EY +
Sbjct: 294 EVFANSLDDFFAKRPVEYTK 313


>gi|152974880|ref|YP_001374397.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152023632|gb|ABS21402.1| Ribonucleoside-diphosphate reductase [Bacillus cytotoxicus NVH
           391-98]
          Length = 322

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 127/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E+   KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQTTYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+ N + +  L      E VH+ ++ +I T+L  +E   E+F+   + P +  KA   
Sbjct: 74  LVHIENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDQHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRKLLKPQVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      ++ Q++++ +L E   +E AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGLLAQQIFAELSAEEQEDVQKETQDLLMELYEIETAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 ASIGL-VGEVNRFVRYNANKGLMNLGLEPRFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|225434341|ref|XP_002276454.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 841

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 106/268 (39%), Gaps = 10/268 (3%)

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
           K +L       +LV N    A  RH      +  +  +             I      D+
Sbjct: 568 KMHLYRLRPVATLVTNATNNARVRHAIINYLKSSMCVRVGVVGGFVGCCFVISDCSSTDD 627

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
           G+          +T   +        +   S T   K +   F + L   +   EG++F 
Sbjct: 628 GKFLLAAWNCRRLTCTDDIISLNAGDVWKGSTTYIGKLSSTLFAERLIA-FACVEGIFFS 686

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
             F  I  L +   M G+    + I R E LH +F   + + ++ + P        QK  
Sbjct: 687 GSFCAIFWLKKKGLMPGLTFSNELISRYEGLHCDFACLLYSLLQKQLPW-------QKVH 739

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
            ++HEA  +E  +  E +P   +G+ A     Y++F+ +R    +G E  +   ENPF W
Sbjct: 740 HIVHEAMEIETQFICEALPCALIGMKATLMSHYIKFVVDRLLVALGYERKYNV-ENPFDW 798

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGAELK 350
           M E I L+   NFF+ R+ +YQ+ + + 
Sbjct: 799 M-EFIFLQGNANFFQRRMGDYQKASIMS 825


>gi|170765644|ref|ZP_02900455.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           albertii TW07627]
 gi|170124790|gb|EDS93721.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           albertii TW07627]
          Length = 319

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 122/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            + L    K+   A+  + I+RDE++H  +      + + +      +E ++ +  +L E
Sbjct: 169 PMYLSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQKNQEKISLTQREELKRFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETTW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAKVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|270265355|ref|ZP_06193616.1| ribonucleoside-diphosphate reductase 2 subunit beta [Serratia
           odorifera 4Rx13]
 gi|270040759|gb|EFA13862.1| ribonucleoside-diphosphate reductase 2 subunit beta [Serratia
           odorifera 4Rx13]
          Length = 323

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 118/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W       +N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 14  NWNSIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWAT---LTPKEQQLTIRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++       A+      P          F EAVH+ ++  I ++L       + + 
Sbjct: 68  TLLDTIQNTVGAPALIADALTPHEEAVYSNIGFMEAVHARSYSSIFSTLCQTPDVDDAYR 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA+  L + ++                         V  E   FY+GF  
Sbjct: 128 WSEENHALQKKAHIILAHYRSDDPLLKKV---------------ASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +
Sbjct: 173 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDATRRQQVKNFAFDLLQD 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E      VG      + ++ + AN+    +G E LF       NP    +
Sbjct: 233 LYDNEVRYTEELYDG--VGWT-EDVKTFLHYNANKALMNLGYEALFPPAMAEVNPAILSA 289

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|309786253|ref|ZP_07680881.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           dysenteriae 1617]
 gi|308925998|gb|EFP71477.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           dysenteriae 1617]
          Length = 301

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/311 (18%), Positives = 114/311 (36%), Gaps = 26/311 (8%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +N W+P +VP+ +D+  W++   LT  E+ +  R        ++L       ++
Sbjct: 1   MWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLLDTLQNVIGAPSL 57

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA 162
                 P     L   +F E VH+ ++  I ++L   +     +    E   +  KA   
Sbjct: 58  MPDALTPHEEAVLSNISFMEVVHARSYSSIFSTLCQTKDVDAAYAWSEENALLQRKAQII 117

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            Q+ +  +                       V  E   FY+GF   +      K+   A+
Sbjct: 118 QQHYRGDNPLKKKI---------------ASVFIESFLFYSGFWLPMYFSSRGKLTNTAD 162

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+RDE++H  +      +   +      +E +  +  +L E    E+ Y  E   +
Sbjct: 163 LIRLIIRDEAVHGYYIGYKYQKSLEKISEAQREELKSFAFDLLLELYDNELQYTDELYAE 222

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETR 339
                 A   + ++ + AN+    +G EPLF       NP    +   +  +  +FF   
Sbjct: 223 TPW---ADDVKTFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADENHDFFSGS 279

Query: 340 VTEYQQGAELK 350
            + Y  G  ++
Sbjct: 280 SSSYVMGKAVE 290


>gi|229160405|ref|ZP_04288403.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           R309803]
 gi|228623129|gb|EEK79957.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           R309803]
          Length = 322

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F    + P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDKHPLLEKKAGIV 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  Q+  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|213965886|ref|ZP_03394077.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           amycolatum SK46]
 gi|213951464|gb|EEB62855.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           amycolatum SK46]
          Length = 338

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 122/357 (34%), Gaps = 40/357 (11%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P     +  N + +    A  D N +   K    W+       N W+P +VP+ +D+  W
Sbjct: 8   PSTPAHREKNPESRACPVAAIDWNTIPDDKDLEVWD---RLTGNFWLPEKVPLSNDIKSW 64

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
            + N L   E+    R        +++      +++      P         AF E+VH+
Sbjct: 65  NTLNAL---EQRTTMRVFTGLTMLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHA 121

Query: 129 HTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            ++  I  +L       + F    E   +  KA   L Y +  +                
Sbjct: 122 KSYSSIFQTLASTPEIQDAFRWGEENEYLQKKAKIILDYYEGDNPQKKKV---------- 171

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
                   + E   FY+GF   +      K+   A+  + I+RDE++H  +      +  
Sbjct: 172 -----ASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQRNL 226

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
                    E +  +  ++ +    EI Y  E      +G      ++++++  N+  + 
Sbjct: 227 ERLTQAERDELKDYTFDLMFDLYDNEIQYTEEMY--DELGWT-EDVKRFLRYNGNKALNN 283

Query: 307 IGLEPLFKYTENPFPWMSEVI------DLKKEKNFFETRVTEYQQGAE-----LKWD 352
           +G E +F   E     +S  I      +  +  +FF    + Y  G         WD
Sbjct: 284 LGYEGMFPADETR---VSPSILSALSPNADENHDFFSGSGSSYVMGKAEVTQDEDWD 337


>gi|229177859|ref|ZP_04305232.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           172560W]
 gi|228605650|gb|EEK63098.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           172560W]
          Length = 322

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 127/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|218709884|ref|YP_002417505.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
           splendidus LGP32]
 gi|218322903|emb|CAV19080.1| Ribonucleoside-diphosphate reductase, beta subunit [Vibrio
           splendidus LGP32]
          Length = 323

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 120/331 (36%), Gaps = 32/331 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+++  K    W        N W+P +VP+ +D+  WK    LT++E+ +  R     
Sbjct: 13  NWNRMIDGKDLEIWN---RLTVNFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++       A+      P     L   AF EAVH+ ++  + ++L       E F 
Sbjct: 67  TLLDTIQNTVGAPALMEDARTPHEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFR 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
             +E P +  KA   L        P                  V  V  E   FY+GF  
Sbjct: 127 WAQENPLLQKKAQIVLDDYLAEGDPLKKK--------------VASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +                    + ++ +++  
Sbjct: 173 PMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAYQSLSEEEQARVKDEAYSLMFS 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
              +E  Y         VGL     + ++ + AN+    +G E LF       NP   M+
Sbjct: 233 LYEIETQYTESLY--DPVGLT-EDVKHFLHYNANKALMNLGFEALFPDELCQVNP-AIMA 288

Query: 325 EVI-DLKKEKNFFETRVTEYQ--QGAELKWD 352
            +  +  +  +FF    + Y   +    + D
Sbjct: 289 ALSPNADENHDFFSGSGSSYVIGKAVATEDD 319


>gi|228907084|ref|ZP_04070948.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 200]
 gi|157955401|gb|ABW06095.1| NrdF [Bacillus thuringiensis serovar toumanoffi]
 gi|228852588|gb|EEM97378.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 200]
          Length = 322

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|68069763|ref|XP_676793.1| ribonucleotide reductase small subunit [Plasmodium berghei strain
           ANKA]
 gi|56496646|emb|CAI04349.1| ribonucleotide reductase small subunit, putative [Plasmodium
           berghei]
          Length = 158

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 84/153 (54%), Gaps = 9/153 (5%)

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG+ F   F  I    + NK+ G+    + I RDE LH +F   + + ++ + P      
Sbjct: 1   EGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP------ 54

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            ++  + ++ EA  +E ++  E++P   +G+N+    QY++F+A+R    +G   +F ++
Sbjct: 55  -EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HS 112

Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           +NPF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 113 KNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 144


>gi|300859086|ref|YP_003784069.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686540|gb|ADK29462.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206792|gb|ADL11134.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           pseudotuberculosis C231]
 gi|302331346|gb|ADL21540.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277038|gb|ADO26937.1| Ribonucleotide reductase, beta subunit [Corynebacterium
           pseudotuberculosis I19]
          Length = 328

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/336 (19%), Positives = 124/336 (36%), Gaps = 40/336 (11%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +DL  W +   L D E+    R     
Sbjct: 19  NWNSIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLKSWGT---LNDLEKTTTMRVFTGL 72

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I  +L   +   E F 
Sbjct: 73  TMLDTIQGTVGAVSMIPDAITPHEEAVYTNIAFMESVHAKSYSNIFMTLASTKEINEAFR 132

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                       V   + E   FY+GF  
Sbjct: 133 WSEENENLQKKAKIVLSYYEGAD---------------PLKRKVASTLLESFLFYSGFYL 177

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   E      +E ++ +  +L++
Sbjct: 178 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQQAVREQTPERQEELKEYTFDLLYD 237

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               EI Y  +      +G      ++++++ AN+  + +G E LF   E     +S  I
Sbjct: 238 LYDNEIQYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADECK---VSPAI 291

Query: 328 ------DLKKEKNFFETRVTEYQQG-----AELKWD 352
                 +  +  +FF    + Y  G      +  WD
Sbjct: 292 LSALSPNADENHDFFSGSGSSYVIGKAENTTDDDWD 327


>gi|291295355|ref|YP_003506753.1| ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279]
 gi|290470314|gb|ADD27733.1| Ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279]
          Length = 429

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 121/307 (39%), Gaps = 23/307 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+  E+P+ DD   W +   L+ +E+ + ++ L      +++  +  +  +
Sbjct: 24  FWDQNVRQFWVDEEIPLADDKLTWMT---LSREEQRVYEQVLAGLTLLDTVQGSVGMPLL 80

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA 162
            +H+ + + +  +      E +H+ ++  I ++L   E   ELF+  R  P +  K  + 
Sbjct: 81  SQHIESLQAKAVMGFMGAMEHMHAKSYSSIFSTLCTSERIAELFDWVRSEPVLQEKQTFV 140

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +    +                        V+ E   FY+GF   L L    +M    E
Sbjct: 141 HRRYLGVQDEQSL-----------YLGLAASVLLESFLFYSGFFYPLLLAGQGRMTSSGE 189

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  +   +  ++    P    K  ++   +ML     LE  Y+      
Sbjct: 190 IINLIIRDESIHGVYVGLLAQEVYAGLPEAQQKTAREGVYSMLEHLAGLEERYSRMLY-- 247

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETR 339
             +GL   +   + ++ A++    +GLEP F  +    NP   ++ +    K  +FF T+
Sbjct: 248 TPLGLT-EAVVTFSRYNADKALMNLGLEPYFGVSAEAVNPVV-LAGLSTHTKNHDFFSTK 305

Query: 340 VTEYQQG 346
              Y + 
Sbjct: 306 GNGYVKA 312


>gi|228938567|ref|ZP_04101175.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228971446|ref|ZP_04132072.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978059|ref|ZP_04138438.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis Bt407]
 gi|157955340|gb|ABW06049.1| NrdF [Bacillus thuringiensis serovar thuringiensis]
 gi|157955368|gb|ABW06070.1| NrdF [Bacillus thuringiensis serovar galechiae]
 gi|157955384|gb|ABW06082.1| NrdF [Bacillus thuringiensis serovar sotto]
 gi|228781720|gb|EEM29919.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis Bt407]
 gi|228788313|gb|EEM36266.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228821165|gb|EEM67182.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326939076|gb|AEA14972.1| ribonucleotide-diphosphate reductase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 322

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 127/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|310816082|ref|YP_003964046.1| ribonucleoside-diphosphate reductase, beta subunit
           [Ketogulonicigenium vulgare Y25]
 gi|308754817|gb|ADO42746.1| ribonucleoside-diphosphate reductase, beta subunit
           [Ketogulonicigenium vulgare Y25]
          Length = 317

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 123/322 (38%), Gaps = 28/322 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   +    W       +N W+P +VP+ +D+  W S    T+ E+ +  R     
Sbjct: 7   NWNRIADDRDLEIWN---RLTSNFWLPEKVPLSNDIQSWSSF---TEAEKQLTIRVFTGL 60

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++ +     A+ +    P          F EAVH+ ++  I ++L    +  E F 
Sbjct: 61  TLLDTIQSKAGAPALMKDALTPHEEAVFANICFMEAVHARSYSSIFSTLCTTVEIDEAFR 120

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA         L    +T  T+   ++         V  E   FY+GF  
Sbjct: 121 WAELNKDLQRKA--------KLIEACYTDDTQPLKKKI------ASVFLESFMFYSGFYL 166

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L      ++   A+  + I++DE++H  +            P    +E +  +  +L +
Sbjct: 167 PLHWASRARLTNTADLIRLIIKDEAVHGYYIGYKFQLGYALLPEAEKEELKGFAYDLLLQ 226

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              +E +YA +      +GL     +Q++ + AN+    +G +P+F       NP    +
Sbjct: 227 LYEIECSYAADLYDG--IGLT-EDVKQFLHYNANKSLMNLGFDPIFPDEITNFNPAVLAA 283

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
              D  +  +FF    + Y  G
Sbjct: 284 LAPDANENHDFFSGSGSSYVIG 305


>gi|261820460|ref|YP_003258566.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           wasabiae WPP163]
 gi|261604473|gb|ACX86959.1| Ribonucleoside-diphosphate reductase [Pectobacterium wasabiae
           WPP163]
          Length = 320

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 120/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   L   ER +  R        
Sbjct: 11  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWGT---LNPRERQLTIRVFTGLTLL 67

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L L     + +    
Sbjct: 68  DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P++  K++  L + ++                         V  E   FY+GF   + 
Sbjct: 128 ENPALQKKSDIILSHYRSDDPLMKKV---------------ASVFLESFLFYSGFYLPMY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +   
Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKADPARQQQVKNFAYDLLQDLYD 232

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+ Y  E      VG      ++++ + AN+    +G E LF       NP    +   
Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319


>gi|322831489|ref|YP_004211516.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
 gi|321166690|gb|ADW72389.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
          Length = 327

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 118/330 (35%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   L+  E+ +  R        
Sbjct: 18  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LSAKEKQLTIRVFTGLTLL 74

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++        + +    P          F EAVH+ ++  I ++L    D  E +    
Sbjct: 75  DTVQNVVGAPTLMKDAVTPHEEAVYSNICFMEAVHARSYSSIFSTLCATVDVDEAYRWSE 134

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA   L Y                            V  E   FY+GF   + 
Sbjct: 135 ENVALQNKAAIILSYYDGEDPLMKKV---------------ASVFLESFLFYSGFYLPMY 179

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          ++ ++++  ++ +   
Sbjct: 180 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKALALESEERQRQIKEQAFDLIQDLYD 239

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            EI Y  E      VG +    ++++ + AN+    +G E LF       NP    +   
Sbjct: 240 NEIRYTEELYDG--VGWS-EDVKKFLHYNANKALMNLGYEALFPASMADVNPAILSALSP 296

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 297 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 326


>gi|259417680|ref|ZP_05741599.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter
           sp. TrichCH4B]
 gi|259346586|gb|EEW58400.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter
           sp. TrichCH4B]
          Length = 325

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 126/346 (36%), Gaps = 35/346 (10%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++   R +    + N+L   K    W        N W+P +VP+ +D+  W   + LT D
Sbjct: 3   DMTQARAVPKAINWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSW---SQLTPD 56

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ +  R        +++        + +    P     L   AF EAVH+ ++  + ++
Sbjct: 57  EQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITPHEEAVLSNIAFMEAVHARSYSSVFST 116

Query: 138 LGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L       E F    E   + AK+   L      +SP                  +  V 
Sbjct: 117 LCQTTEVDEAFRWSAENEHLQAKSRLILDEYDATASP--------------LRKKIASVF 162

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      ++   A+  + I+RDE++H  +      +          K
Sbjct: 163 LESFLFYSGFYLPMHWSSRARLTNTADLIRLIIRDEAIHGYYIGYKFQRGMERLSEAERK 222

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +  +  +L +   +E  Y  +      +GL     + ++ + AN+    +G E LF  
Sbjct: 223 ELKDFAFGLLFDLYDIEARYTEQLYDG--LGLT-EDVKNFLHYNANKALQNLGFEALFPE 279

Query: 316 TE---NPFPWMSEVI-DLKKEKNFFETRVTEYQ--QGAELK---WD 352
                NP   M+ +     +  +FF    + Y   +    +   WD
Sbjct: 280 ETCRVNP-AIMAALSPGSDENHDFFSGSGSSYVIGKAEATEDEDWD 324


>gi|325496274|gb|EGC94133.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
           fergusonii ECD227]
          Length = 319

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +  +                       V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDNPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLGKTSLEQREELKNFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|229189534|ref|ZP_04316550.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           ATCC 10876]
 gi|228593979|gb|EEK51782.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           ATCC 10876]
          Length = 322

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAKEQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|1395207|gb|AAB81405.1| ribonucleotide reductase R2-1 small subunit [Mycobacterium
           tuberculosis str. Erdman]
          Length = 321

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 69/333 (20%), Positives = 128/333 (38%), Gaps = 35/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+LL  K    WE       N W+P ++P+ +DLA W++   L+  E+    R     
Sbjct: 13  NWNRLLDAKDLQVWE---RLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++  A    +A+      P     L   AF E+VH+ ++  I ++L   +   + F+
Sbjct: 67  TLLDTAQATVGAVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFD 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  KA   + Y +   + +                    V+ E   FY+GF  
Sbjct: 127 WSEQNPYLQRKAQIIVDYYRGDDAQAQR----------------SSVMLESFLFYSGFYL 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +       + ++ +  +LH 
Sbjct: 171 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHT 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI YAH+      +G        YM++ AN+    +G +P F       NP    +
Sbjct: 231 LYANEIDYAHDLY--DELGWT-DDVLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAA 287

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
                 +  +FF    + Y  G      +  WD
Sbjct: 288 LDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 320


>gi|167947199|ref|ZP_02534273.1| Ribonucleotide reductase, beta subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 241

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 78/199 (39%), Positives = 115/199 (57%), Gaps = 2/199 (1%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            K VN DDKR++N  +DVNQL P KY WAWE +L+A  NHW P ++ M  D+  +     
Sbjct: 45  TKPVNPDDKRVVNGLTDVNQLAPFKYPWAWEYFLNANKNHWTPLDINMAQDVHDYHH--K 102

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT +ER + +  L +  +S+ L   NI LA+   +S PE + Y  RQ +EEA+H+ T+Q+
Sbjct: 103 LTLEERHIYENVLSYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTYQH 162

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            I ++GLD+ E++N YR VP I  K   A +   ++         +D  + FL     F 
Sbjct: 163 CIETIGLDQVEIYNRYRVVPEINGKIQIANRRLHSILRSDVDLSNRDELENFLMAYLFFA 222

Query: 194 VVFEGMWFYTGFAQILSLG 212
            +FEG+WFY GF+ I +L 
Sbjct: 223 GIFEGVWFYNGFSPIFALQ 241


>gi|45478633|ref|NP_995489.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           biovar Microtus str. 91001]
 gi|52788092|ref|YP_093920.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis]
 gi|145597234|ref|YP_001154698.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Pestoides F]
 gi|162417832|ref|YP_001604568.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Angola]
 gi|229896974|ref|ZP_04512133.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
           [Yersinia pestis Pestoides A]
 gi|45357286|gb|AAS58680.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Yersinia pestis biovar Microtus str. 91001]
 gi|52538021|emb|CAG27446.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Yersinia pestis]
 gi|145213002|gb|ABP42407.1| ribonucleoside-diphosphate reductase class Ia beta subunit
           [Yersinia pestis Pestoides F]
 gi|162350804|gb|ABX84753.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           Angola]
 gi|229700010|gb|EEO88050.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
           [Yersinia pestis Pestoides A]
          Length = 380

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/338 (20%), Positives = 126/338 (37%), Gaps = 26/338 (7%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   + M   +S +V +    KY    +      +  W P EV +  D   + +   L +
Sbjct: 12  DATKEPMFLGQSVNVARYDQQKYRDFEKLIEKQLSFFWRPEEVDITTDRIDFNT--KLQE 69

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            ER +   NL +    +S+   +    +   +S PE   ++   +F E +HS ++ +II 
Sbjct: 70  HERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPELETWVETWSFSETIHSRSYTHIIR 129

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-----------------TGTK 179
            +  D   +F+       I ++A         L   +                    G  
Sbjct: 130 GMVDDPSIVFDGIVTDEEIISRAVSISSEYDRLYEMTCARQHLGEDEFERLYVSEFDGKP 189

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
              Q  L    V     E + FY  FA   + G    + G  +  ++I RDE+LH     
Sbjct: 190 YPLQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKLLEGNTKIMRFIARDEALHCEGTE 249

Query: 240 DVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
            +I  ++     L  K    E +      + +    E+ +A      G  +GLNA   + 
Sbjct: 250 RMIRFMRTGREGLMWKMIAAEEESFIYQTMMDVAGQEMRWADYLFKDGSMIGLNADILKS 309

Query: 295 YMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
           Y+++  N    ++GL PLF    ++P  WM++ +    
Sbjct: 310 YVKYRTNLAMRRLGLRPLFPEIKDDPLVWMNKWLLSDT 347


>gi|218233288|ref|YP_002366135.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
           B4264]
 gi|229149653|ref|ZP_04277884.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           m1550]
 gi|157955328|gb|ABW06040.1| NrdF [Bacillus thuringiensis serovar entomocidus]
 gi|157955388|gb|ABW06085.1| NrdF [Bacillus thuringiensis serovar subtoxicus]
 gi|157955409|gb|ABW06101.1| NrdF [Bacillus cereus]
 gi|218161245|gb|ACK61237.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           B4264]
 gi|228633863|gb|EEK90461.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           m1550]
          Length = 322

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQDLLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|239917558|ref|YP_002957116.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Micrococcus luteus NCTC 2665]
 gi|281413955|ref|ZP_06245697.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Micrococcus luteus NCTC 2665]
 gi|239838765|gb|ACS30562.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Micrococcus luteus NCTC 2665]
          Length = 323

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 131/338 (38%), Gaps = 34/338 (10%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
           L    + N+   ++     E +    NN W+P +VP+ +D+  W   + LTD+ERL+  R
Sbjct: 9   LVEAINWNR---IQDEKDVEVWNRLVNNFWLPEKVPLSNDVQSW---SHLTDEERLLSMR 62

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142
                   +++      +++      P     L   AF E+VH+ ++  I ++L      
Sbjct: 63  VFTGLTLLDTIQGTVGAVSLIPDAMTPHEEAVLTNIAFMESVHAKSYSSIFSTLASTPEI 122

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
            E F   RE  ++ AKA   ++                              + E   FY
Sbjct: 123 DEAFRWSRENRNLQAKARLIVERYDGQDPYKKKI---------------ASTLLESFLFY 167

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           +GF   + L    ++   A+  + I+RDE++H  +      +     P    +E +  + 
Sbjct: 168 SGFYWPMYLSAHARLTNTADLIRLIIRDEAVHGYYIGYKYQRSIETLPEEKREELKAFTF 227

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
            +L E    E+ Y H+      VGL A   ++++ + AN+    +G EP+F       NP
Sbjct: 228 ELLFELYENEVEYTHDLY--DAVGL-AEDVKKFLHYNANKALMNLGYEPMFPAETTNVNP 284

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
               +   +  +  +FF    + Y  G         WD
Sbjct: 285 AILSALSPNSDENHDFFSGSGSSYVIGKAENTEDEDWD 322


>gi|291284009|ref|YP_003500827.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli O55:H7 str. CB9615]
 gi|290763882|gb|ADD57843.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli O55:H7 str. CB9615]
          Length = 319

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISPGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|289705575|ref|ZP_06501967.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus
           luteus SK58]
 gi|289557804|gb|EFD51103.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus
           luteus SK58]
          Length = 323

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 131/338 (38%), Gaps = 34/338 (10%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
           L    + N+   ++     E +    NN W+P +VP+ +D+  W   + LTD+ERL+  R
Sbjct: 9   LVEAVNWNR---IQDEKDVEVWNRLVNNFWLPEKVPLSNDVQSW---SHLTDEERLLSMR 62

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142
                   +++      +++      P     L   AF E+VH+ ++  I ++L      
Sbjct: 63  VFTGLTLLDTIQGTVGAVSLIPDAMTPHEEAVLTNIAFMESVHAKSYSSIFSTLASTPEI 122

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
            E F   RE  ++ AKA   ++                              + E   FY
Sbjct: 123 DEAFRWSRENRNLQAKAGLIVERYDGQDPYKKKI---------------ASTLLESFLFY 167

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           +GF   + L    ++   A+  + I+RDE++H  +      +     P    +E +  + 
Sbjct: 168 SGFYWPMYLSAHARLTNTADLIRLIIRDEAVHGYYIGYKYQRSIETLPEEKREELKAFTF 227

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
            +L E    E+ Y H+      VGL A   ++++ + AN+    +G EP+F       NP
Sbjct: 228 ELLFELYENEVEYTHDLY--DAVGL-AEDVKKFLHYNANKALMNLGYEPMFPAETTNVNP 284

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
               +   +  +  +FF    + Y  G         WD
Sbjct: 285 AILSALSPNSDENHDFFSGSGSSYVIGKAENTEDEDWD 322


>gi|218547807|ref|YP_002381598.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
           fergusonii ATCC 35469]
 gi|218355348|emb|CAQ87955.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia fergusonii ATCC 35469]
          Length = 319

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 121/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYT 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  S+  KA    Q+ +  +                       V  E   FY+GF  
Sbjct: 124 WSEENASLQRKAQIIQQHYRGDNPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETTW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|157955336|gb|ABW06046.1| NrdF [Bacillus thuringiensis serovar kurstaki]
          Length = 322

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E + +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELSEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|312137650|ref|YP_004004986.1| ribonucleoside-diphosphate reductase beta subunit nrdf [Rhodococcus
           equi 103S]
 gi|311886989|emb|CBH46298.1| ribonucleoside-diphosphate reductase beta subunit NrdF [Rhodococcus
           equi 103S]
          Length = 322

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 72/332 (21%), Positives = 126/332 (37%), Gaps = 34/332 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P ++P+ +DLA W +   LTD ER M  R     
Sbjct: 13  NWNRVPDPKDAEVWD---RLTGNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFN 147
              ++  A    +A+      P     L   AF E+VH+ ++  I ++L         F 
Sbjct: 67  TLLDTAQATVGAVAMIADAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTRQIDAAFE 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA   + Y +   + +                    V+ E   FY+GF  
Sbjct: 127 WSERNPHLQRKAQIVVDYYRGDDALARK---------------AASVMLESFLFYSGFYL 171

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      ++   A+  + I+RDE++H  +      +             ++ +  +L  
Sbjct: 172 PMYWASHGELTNTADLIRLIIRDEAVHGYYIGYKCRKALERLDASARDAHRRYTYDLLET 231

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+AYA +      VG  A     YM+F AN+    +G EP+F  +E   NP    +
Sbjct: 232 LYANEVAYAADLY--DEVGWTAEVVS-YMRFNANKALANLGYEPMFPVSECQVNPAILSA 288

Query: 325 EVIDLKKEKNFFETRVTEY----QQGAE-LKW 351
                 +  +FF    + Y    Q+  E + W
Sbjct: 289 LDPGAGENHDFFSGSGSAYVIGKQKPTEDVDW 320


>gi|300932708|ref|ZP_07147964.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           resistens DSM 45100]
          Length = 331

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 118/341 (34%), Gaps = 50/341 (14%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  W +   L + ER    R     
Sbjct: 22  NWNSIPDDKDLEVWD---RLTANFWLPEKVPLSNDVQSWGT---LNEVERQTTMRVFTGL 75

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++                +F E+VH+ ++  I  +L       + F 
Sbjct: 76  TMLDTIQGTVGAVSLINDAQTMHEEAVYTNISFMESVHAKSYSSIFMTLASTPEINDAFR 135

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L + +                   Q   +  V+ E   FY+GF  
Sbjct: 136 WSEENEHLQNKAKIILDFYEGDD---------------PQKRKIASVLLESFLFYSGFYL 180

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDES+H  +      +   +      +E +  +  +L E
Sbjct: 181 PMYWSSHAKLTNTADIIRLIIRDESVHGYYIGYKYQRAMEQESAARQEELKDHTFDLLLE 240

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---------- 317
               E  Y  +      +G      ++++++ AN+  + +G E LF   E          
Sbjct: 241 LYDNEAQYTEDLY--DELGWT-EDVKRFLRYNANKALNNLGYEGLFPADETRVSPAILSA 297

Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
            NP           +  +FF    + Y  G      +  WD
Sbjct: 298 LNP--------GGDENHDFFSGSGSSYVIGKAENTTDDDWD 330


>gi|157955305|gb|ABW06022.1| NrdF [Bacillus thuringiensis serovar aizawai]
 gi|157955352|gb|ABW06058.1| NrdF [Bacillus thuringiensis serovar colmeri]
 gi|157955372|gb|ABW06073.1| NrdF [Bacillus thuringiensis serovar indiana]
 gi|157955405|gb|ABW06098.1| NrdF [Bacillus thuringiensis serovar wuhanensis]
          Length = 322

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|238784826|ref|ZP_04628827.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           bercovieri ATCC 43970]
 gi|238714242|gb|EEQ06253.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           bercovieri ATCC 43970]
          Length = 323

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 122/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W +   LT +E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +     + +    
Sbjct: 71  DTIQNTLGAPALIKDAMTPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                            V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYHNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +      +   +E +  +  +L +   
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLERVDNSRRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +   K  VG      ++++ + AN+    +G E LF  ++   +P    +   
Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|157955319|gb|ABW06033.1| NrdF [Bacillus thuringiensis serovar pakistani]
          Length = 322

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSTEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|119387083|ref|YP_918138.1| ribonucleotide-diphosphate reductase subunit beta [Paracoccus
           denitrificans PD1222]
 gi|119377678|gb|ABL72442.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Paracoccus denitrificans PD1222]
          Length = 329

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 121/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +D+  W +   L  +ER +  R     
Sbjct: 20  NWNRLEDEKDLEVWN---RLTVNFWLPEKVPLSNDVQSWAT---LRPEERELTIRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       A+      P     L   AF EAVH+ ++  I ++L L       F 
Sbjct: 74  TLLDTIQNTVGAPAMMPDALTPHEEAVLSNIAFMEAVHARSYSSIFSTLCLTPEVDAAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L+  +  S P                  +  V  E   FY+GF  
Sbjct: 134 WAEENPHLQQKARLVLEEYKAGSDP--------------LKRKIASVFLESFMFYSGFYL 179

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +             +  + +++ +
Sbjct: 180 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLERLGEAERAALKDFAFSLIFD 239

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
              +E  Y  E      +GL     + ++ + AN+    +G E LF       NP   ++
Sbjct: 240 LYDIEAKYTAELYDG--IGLT-EDVKSFLHYNANKALQNLGYEALFPPQACEVNP-AILA 295

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
            +    +  +FF    + Y  G  +      WD
Sbjct: 296 ALSPDSENHDFFSGSGSSYVIGKAVATEDEDWD 328


>gi|30019505|ref|NP_831136.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
           ATCC 14579]
 gi|229043194|ref|ZP_04190917.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH676]
 gi|229078637|ref|ZP_04211194.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock4-2]
 gi|229108909|ref|ZP_04238513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock1-15]
 gi|229126769|ref|ZP_04255781.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-Cer4]
 gi|229144056|ref|ZP_04272472.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST24]
 gi|296502033|ref|YP_003663733.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           thuringiensis BMB171]
 gi|29895049|gb|AAP08337.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           ATCC 14579]
 gi|157955310|gb|ABW06026.1| NrdF [Bacillus thuringiensis serovar canadensis]
 gi|157955392|gb|ABW06088.1| NrdF [Bacillus thuringiensis serovar thompsoni]
 gi|157955396|gb|ABW06091.1| NrdF [Bacillus thuringiensis serovar tohokuensis]
 gi|228639453|gb|EEK95867.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST24]
 gi|228656709|gb|EEL12535.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-Cer4]
 gi|228674565|gb|EEL29805.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock1-15]
 gi|228704707|gb|EEL57136.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           Rock4-2]
 gi|228726156|gb|EEL77390.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH676]
 gi|296323085|gb|ADH06013.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           thuringiensis BMB171]
          Length = 322

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|305681191|ref|ZP_07403998.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659396|gb|EFM48896.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           matruchotii ATCC 14266]
          Length = 330

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +DL  W +   L + E+    R     
Sbjct: 21  NWNTIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLKSWST---LNELEKQTTMRVFTGL 74

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++            L   AF E+VH+ ++  I  +L   +   E F 
Sbjct: 75  TLLDTIQGTVGAVSMLPDAVTLHEEAVLTNIAFMESVHAKSYSNIFMTLASTKEINEAFR 134

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y                         V   + E   FY+GF  
Sbjct: 135 WSEENENLQKKAKIILTYYDGAD---------------PLKRKVASTLLESFLFYSGFYL 179

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +      +E ++ +  +L+E
Sbjct: 180 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKFQQALAKESPARQEELKEYTFDVLYE 239

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324
               EIAY  +      +G      ++++++ AN+  + +G E LF   E    P    +
Sbjct: 240 LYENEIAYTEDLY--DPLGWT-EDVKRFLRYNANKALNNLGYEALFPADECQVSPAILSA 296

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G      +  WD
Sbjct: 297 LSPNADENHDFFSGSGSSYVIGKAENTTDEDWD 329


>gi|82778048|ref|YP_404397.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           dysenteriae Sd197]
 gi|81242196|gb|ABB62906.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
           dysenteriae Sd197]
          Length = 322

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F E VH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEVVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +  +                       V  E   FY+GF  
Sbjct: 124 WSEENALLQRKAQIIQQHYRGDNPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKSLEKISEAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKTFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSSSSYVMGKAVE 311


>gi|269217712|ref|ZP_06161566.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269212647|gb|EEZ78987.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 325

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 118/330 (35%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P ++P+ +D+  W +   L   E+ M  R        
Sbjct: 16  NWNRIEDEKDLEVWDRLTGNFWLPEKIPLSNDIPSWST---LKPHEQQMTTRVFTGLTLL 72

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++      +++      P     L   AF E+VH+ ++  I ++L   E   E F    
Sbjct: 73  DTVQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSSIFSTLISTEEIDETFRWSE 132

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA   L Y +   +                       + E   FY+GF   + 
Sbjct: 133 ENEYLQKKAKIILDYYRGEDAEKRKV---------------ASTMLESFLFYSGFYAPMY 177

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +       E Q+ + +++ +   
Sbjct: 178 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQKALAKASQERRDELQEYAYSLVMDLYD 237

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E  Y         +GL     + +++  AN+  + +G E LF   +   NP    +   
Sbjct: 238 NEELYTESLY--DEMGLT-EDVKMFLRHNANKALNNLGYEALFGPDQTAVNPSILAALSP 294

Query: 328 DLKKEKNFFETRVTEYQQGAE-----LKWD 352
           +  +  +FF    + Y  G         WD
Sbjct: 295 NADENHDFFSGSGSSYVIGTAEATTDDDWD 324


>gi|75759355|ref|ZP_00739452.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|218896385|ref|YP_002444796.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           G9842]
 gi|228900033|ref|ZP_04064269.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 4222]
 gi|228920164|ref|ZP_04083513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228964415|ref|ZP_04125529.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|74493187|gb|EAO56306.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|157955348|gb|ABW06055.1| NrdF [Bacillus thuringiensis serovar alesti]
 gi|157955356|gb|ABW06061.1| NrdF [Bacillus thuringiensis serovar dakota]
 gi|157955360|gb|ABW06064.1| NrdF [Bacillus thuringiensis serovar darmstadiensis]
 gi|157955364|gb|ABW06067.1| NrdF [Bacillus thuringiensis serovar dendrolimus]
 gi|157955380|gb|ABW06079.1| NrdF [Bacillus thuringiensis serovar ostriniae]
 gi|218545942|gb|ACK98336.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           G9842]
 gi|228795272|gb|EEM42764.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228839620|gb|EEM84912.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228859647|gb|EEN04071.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 4222]
          Length = 322

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|209762238|gb|ACI79431.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
           coli]
 gi|320646030|gb|EFX15007.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H- str. 493-89]
 gi|320651330|gb|EFX19761.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H- str. H 2687]
          Length = 319

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|269865568|ref|XP_002651969.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063399|gb|EED42087.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 251

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 102/242 (42%), Gaps = 20/242 (8%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +L  D
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LFN    +PSI  KA WA ++  + +S                   V +   EG
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFD--------------TRCVAFACVEG 188

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++F   FA I  L +   M G+    + I RDE LH +F   +   I  +   +     +
Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNKCTVIEDIVRK 248

Query: 259 QK 260
           + 
Sbjct: 249 RW 250


>gi|308172806|ref|YP_003919511.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605670|emb|CBI42041.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           amyloliquefaciens DSM 7]
          Length = 327

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/308 (22%), Positives = 120/308 (38%), Gaps = 20/308 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L   E+    R L      ++   N  +  I
Sbjct: 24  FYAQNVKQFWLPEEISLNGDLLSWK---ALGPAEQTTYMRGLAGLTLLDTEQGNTGMPII 80

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
            +H++  + +  L   A  E  VH+ ++  I  +L   E   E+F   +  P +  KA  
Sbjct: 81  AKHIAGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKTNPYLQRKAAL 140

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
                + +         K+ D   L    V  V  E   FY+GF   L      K+    
Sbjct: 141 ITGLYRDI---------KEGDAISLYKALVASVYLESFLFYSGFYYPLYFAGQGKLTSSG 191

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +       E +  +  +L E    E+AY  +   
Sbjct: 192 EIINLIIRDEAIHGVYVGLLAQEIYGKQDPDVQLEMRDFAVELLTELYDNEVAYTEDLY- 250

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETRV 340
              VGL     ++++++ AN+    +G +P F+    NP   M+ +    K  +FF  + 
Sbjct: 251 -DAVGLT-HDVKRFLRYNANKALQNLGFDPYFEEERPNPIV-MNGLNTKTKSHDFFSQKG 307

Query: 341 TEYQQGAE 348
             Y++   
Sbjct: 308 NGYKKATV 315


>gi|42780545|ref|NP_977792.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
           ATCC 10987]
 gi|42736465|gb|AAS40400.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           ATCC 10987]
          Length = 322

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 127/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|227833933|ref|YP_002835640.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184936|ref|ZP_06044357.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454949|gb|ACP33702.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 329

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 123/330 (37%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  WK+   LT+ E+    R     
Sbjct: 20  NWNTIPDEKDLEVWD---RLTGNFWLPEKVPVSNDIPSWKT---LTEKEQETTMRVFAGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++      P         AF E+VH+ ++  I  +L       + F 
Sbjct: 74  TLLDTIQGTVGAVSLLPDAVTPHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y Q  +                        + E   FY+GF  
Sbjct: 134 WSEENENLQRKAKIVMSYYQGDNPLKKKV---------------ASTLLESFLFYSGFFL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +      +E +  +  +L++
Sbjct: 179 PMHFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQGYQKLSEPEQEEMKGYAFDLLYD 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 239 LYENEIDYTEDLY--DELGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +  E   D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEETTDD 325


>gi|238794433|ref|ZP_04638043.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           intermedia ATCC 29909]
 gi|238726228|gb|EEQ17772.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           intermedia ATCC 29909]
          Length = 330

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W +   LT +E+ +  R     
Sbjct: 21  NWNKIEDDKDLDVWN---RLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGL 74

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++       A+ +    P         +F EAVH+ ++  I ++L +     + + 
Sbjct: 75  TLLDTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYR 134

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA+  LQ+                            V  E   FY+GF  
Sbjct: 135 WSEENGPLQKKADIILQHYHNDDPLKKKI---------------ASVFLESFLFYSGFYL 179

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +  +   +E +  +  +L +
Sbjct: 180 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQQGLEKVDNARRQEIKNFAFDLLQD 239

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +   K  VG      ++++ + AN+    +G E LF  ++   +P    +
Sbjct: 240 LYDNEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAA 296

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 297 LSPNADENHDFFSGSGSSYVIGKAINTEDEDWD 329


>gi|323941488|gb|EGB37671.1| ribonucleotide reductase [Escherichia coli E482]
          Length = 319

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+ +W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPVWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|293415927|ref|ZP_06658567.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
 gi|291432116|gb|EFF05098.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
          Length = 319

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|225686158|ref|YP_002734130.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis ATCC 23457]
 gi|256043236|ref|ZP_05446173.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256262715|ref|ZP_05465247.1| ribonucleotide reductase [Brucella melitensis bv. 2 str. 63/9]
 gi|260564448|ref|ZP_05834933.1| ribonucleotide reductase [Brucella melitensis bv. 1 str. 16M]
 gi|265989661|ref|ZP_06102218.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|225642263|gb|ACO02176.1| Ribonucleoside-diphosphate reductase [Brucella melitensis ATCC
           23457]
 gi|260152091|gb|EEW87184.1| ribonucleotide reductase [Brucella melitensis bv. 1 str. 16M]
 gi|263000330|gb|EEZ13020.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263092503|gb|EEZ16756.1| ribonucleotide reductase [Brucella melitensis bv. 2 str. 63/9]
 gi|326410495|gb|ADZ67559.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis M28]
 gi|326553787|gb|ADZ88426.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis M5-90]
          Length = 329

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 115/330 (34%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W++   L   E+ +  R     
Sbjct: 20  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTTRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L L     + + 
Sbjct: 74  TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   L                              V  E   FY+GF  
Sbjct: 134 WSEENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 179 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y         VGL     ++++ + AN+    +G E LF       NP    +
Sbjct: 239 LYDNEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 295

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +    + +
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAVATEDE 325


>gi|330908707|gb|EGH37221.1| ribonucleotide reductase of class 1b (aerobic), beta subunit
           [Escherichia coli AA86]
          Length = 319

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARHEELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|225021562|ref|ZP_03710754.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945553|gb|EEG26762.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 330

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +DL  W +   L D E+    R     
Sbjct: 21  NWNTIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLKSWST---LNDLEKQTTMRVFTGL 74

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++            L   AF E+VH+ ++  I  +L   +   E F 
Sbjct: 75  TLLDTIQGTVGAVSMLPDAVTLHEEAVLTNIAFMESVHAKSYSNIFMTLASTKEINEAFR 134

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y                         V   + E   FY+GF  
Sbjct: 135 WSEENENLQKKAKIILTYYDGAD---------------PLKRKVASTLLESFLFYSGFYL 179

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +      +E ++ +  +L+E
Sbjct: 180 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKFQQALAKESPARQEELKEYTFDVLYE 239

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324
               EIAY  +      +G      ++++++ AN+  + +G E LF   E    P    +
Sbjct: 240 LYENEIAYTEDLY--DPLGWT-EDVKRFLRYNANKALNNLGYEALFPADECQVSPAILSA 296

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G      +  WD
Sbjct: 297 LSPNADENHDFFSGSGSSYVIGKAENTTDEDWD 329


>gi|172041159|ref|YP_001800873.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           urealyticum DSM 7109]
 gi|171852463|emb|CAQ05439.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           urealyticum DSM 7109]
          Length = 331

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 58/343 (16%), Positives = 117/343 (34%), Gaps = 47/343 (13%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
           +    + N++   +    W+       N W+P +VP+ +D+  W +   L D E+    R
Sbjct: 17  IIGSVNWNEVPDDRDLEVWD---RLTANFWLPEKVPVSNDIQSWAT---LNDAEKNATMR 70

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142
                   +++      +++    +       L   AF E+VH+ ++  I  +L      
Sbjct: 71  VFTGLTMLDTIQGTVGAVSLIPEATTMHEEAVLTNIAFMESVHAKSYSQIFMTLASTREI 130

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
            + F    E  ++  K    LQY +                       +  V+ E   FY
Sbjct: 131 NDAFRWSEENENLQRKGEIILQYYKGDD---------------PLKRKIASVLLESFLFY 175

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           +GF   +      K+   A+  + I+RDES+H  +      +          +E +    
Sbjct: 176 SGFYLPMRWSSMGKLTNTADIIRLIIRDESVHGYYIGYKYQRALENESPERQEELKGFVV 235

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----- 317
             L +    E+ Y         +G      ++++++ AN+  + +G + LF   E     
Sbjct: 236 EQLLDLYDNEVEYTESIY--DEIGWT-EDVKRFLRYNANKAMNNLGYDGLFPVEETRVSA 292

Query: 318 ------NPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
                 NP           +  +FF    + Y   +      D
Sbjct: 293 AILAALNP--------GGDENHDFFSGSGSSYVIGKAETTTDD 327


>gi|229057079|ref|ZP_04196471.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH603]
 gi|228720220|gb|EEL71799.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH603]
          Length = 322

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 126/309 (40%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIV 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q +++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFTELSAKEQQEVQTETQELLMELYEIELAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|229029125|ref|ZP_04185222.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH1271]
 gi|228732183|gb|EEL83068.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH1271]
          Length = 322

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TGYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  Q+  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFTELSAEDQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|238796650|ref|ZP_04640156.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           mollaretii ATCC 43969]
 gi|238719381|gb|EEQ11191.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           mollaretii ATCC 43969]
          Length = 323

 Score =  143 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 123/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W +   LT +E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +     + +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                            V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYHNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +  +   +E +  +  +L +   
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNNRRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +   K  VG      ++++ + AN+    +G E LF  ++   +P    +   
Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPSSQAAVSPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|312262463|gb|ADQ52758.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage PX29]
          Length = 376

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 62/316 (19%), Positives = 121/316 (38%), Gaps = 25/316 (7%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +K+    +    + +  W P EV +  D   +   + L++ E+ +  +NL + +  +S+ 
Sbjct: 31  VKHPAIDKLTERSLSFFWRPEEVDLSKDAIDY---SRLSEQEQYVFTQNLKYQSLLDSVQ 87

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
                L     +S+     ++   +F E +HS ++ +I+ +L +D   +F+       I 
Sbjct: 88  GRAPNLVFLPIVSDVALETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDAKIM 147

Query: 157 AKANWALQYTQTLS--------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
           A+A    QY   L               SP          +E +          E M FY
Sbjct: 148 ARATSVTQYYDDLISELKTYDLLRQSVFSPELRVAQLTNVKEAMYLAMHAVNALEAMRFY 207

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQ 258
             FA   S G    M G A+  + I RDE LHL     +I   +  +      +     +
Sbjct: 208 VSFACTFSFGERGLMEGNAKIMRLIARDEQLHLKGTQYLIRAWQNGDDDSEMVDIARRLE 267

Query: 259 QKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316
            K+ ++  E    E  +A + +      GL+      Y+ ++   R   +GL    +   
Sbjct: 268 SKAVSIFIEVAEQEKEWAKDLLGNVSIPGLSLAEMIDYIDYLTGSRMRSVGLPVPDEVNV 327

Query: 317 --ENPFPWMSEVIDLK 330
             ++P PW+ + ++  
Sbjct: 328 PIKHPLPWIRKWLNSD 343


>gi|16130590|ref|NP_417162.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. MG1655]
 gi|74313247|ref|YP_311666.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sonnei
           Ss046]
 gi|89109469|ref|AP_003249.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli str. K-12 substr. W3110]
 gi|157162127|ref|YP_001459445.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           HS]
 gi|170019072|ref|YP_001724026.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           ATCC 8739]
 gi|170082262|ref|YP_001731582.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. DH10B]
 gi|188492563|ref|ZP_02999833.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 53638]
 gi|193065983|ref|ZP_03047042.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E22]
 gi|193070996|ref|ZP_03051924.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E110019]
 gi|194427830|ref|ZP_03060376.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B171]
 gi|194439440|ref|ZP_03071516.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 101-1]
 gi|209920120|ref|YP_002294204.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           SE11]
 gi|218696273|ref|YP_002403940.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           55989]
 gi|238901820|ref|YP_002927616.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli BW2952]
 gi|256019542|ref|ZP_05433407.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
 gi|256024812|ref|ZP_05438677.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           4_1_40B]
 gi|260845324|ref|YP_003223102.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|293448994|ref|ZP_06663415.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|300906827|ref|ZP_07124508.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 84-1]
 gi|300916824|ref|ZP_07133528.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 115-1]
 gi|300922750|ref|ZP_07138839.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 182-1]
 gi|300930529|ref|ZP_07145925.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 187-1]
 gi|300949072|ref|ZP_07163119.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 116-1]
 gi|300957447|ref|ZP_07169660.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 175-1]
 gi|301026690|ref|ZP_07190101.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 196-1]
 gi|301306007|ref|ZP_07212087.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 124-1]
 gi|301327384|ref|ZP_07220633.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 78-1]
 gi|301645345|ref|ZP_07245292.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 146-1]
 gi|307139368|ref|ZP_07498724.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           H736]
 gi|307314435|ref|ZP_07594040.1| Ribonucleoside-diphosphate reductase [Escherichia coli W]
 gi|312973113|ref|ZP_07787286.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 1827-70]
 gi|331643364|ref|ZP_08344495.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H736]
 gi|331669414|ref|ZP_08370260.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA271]
 gi|331678654|ref|ZP_08379328.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H591]
 gi|332280666|ref|ZP_08393079.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
 gi|2507306|sp|P37146|RIR4_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta;
           AltName: Full=R2F protein; AltName: Full=Ribonucleotide
           reductase 2
 gi|303325061|pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli
 gi|303325062|pdb|3N38|A Chain A, Ribonucleotide Reductase Nrdf From Escherichia Coli Soaked
           With Ferrous Ions
 gi|303325063|pdb|3N39|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Nrdi
 gi|303325065|pdb|3N39|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Nrdi
 gi|303325067|pdb|3N3A|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Reduced Nrdi
 gi|303325069|pdb|3N3A|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Reduced Nrdi
 gi|303325071|pdb|3N3B|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Reduced Nrdi With A
           Trapped Peroxide
 gi|303325073|pdb|3N3B|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
           Escherichia Coli In Complex With Reduced Nrdi With A
           Trapped Peroxide
 gi|1789031|gb|AAC75723.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. MG1655]
 gi|1800064|dbj|BAA16541.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli str. K12 substr. W3110]
 gi|73856724|gb|AAZ89431.1| ribonucleoside-diphosphate reductase 2, beta chain, frag [Shigella
           sonnei Ss046]
 gi|157067807|gb|ABV07062.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli HS]
 gi|169754000|gb|ACA76699.1| Ribonucleoside-diphosphate reductase [Escherichia coli ATCC 8739]
 gi|169890097|gb|ACB03804.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli str. K-12 substr. DH10B]
 gi|188487762|gb|EDU62865.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 53638]
 gi|192926397|gb|EDV81032.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E22]
 gi|192955654|gb|EDV86129.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E110019]
 gi|194414063|gb|EDX30339.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B171]
 gi|194421616|gb|EDX37627.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli 101-1]
 gi|209762244|gb|ACI79434.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
           coli]
 gi|209913379|dbj|BAG78453.1| ribonucleoside-diphosphate reductase beta subunit [Escherichia coli
           SE11]
 gi|218353005|emb|CAU98821.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli 55989]
 gi|238863480|gb|ACR65478.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli BW2952]
 gi|257760471|dbj|BAI31968.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|291322084|gb|EFE61513.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
 gi|299879612|gb|EFI87823.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 196-1]
 gi|300315803|gb|EFJ65587.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 175-1]
 gi|300401428|gb|EFJ84966.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 84-1]
 gi|300415890|gb|EFJ99200.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 115-1]
 gi|300420935|gb|EFK04246.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 182-1]
 gi|300451458|gb|EFK15078.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 116-1]
 gi|300461585|gb|EFK25078.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 187-1]
 gi|300838718|gb|EFK66478.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 124-1]
 gi|300846038|gb|EFK73798.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 78-1]
 gi|301076379|gb|EFK91185.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 146-1]
 gi|306906003|gb|EFN36524.1| Ribonucleoside-diphosphate reductase [Escherichia coli W]
 gi|309703041|emb|CBJ02373.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           ETEC H10407]
 gi|310333055|gb|EFQ00269.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 1827-70]
 gi|315061957|gb|ADT76284.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli W]
 gi|315254452|gb|EFU34420.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 85-1]
 gi|315615063|gb|EFU95700.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 3431]
 gi|320198428|gb|EFW73030.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           EC4100B]
 gi|320656721|gb|EFX24609.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320662264|gb|EFX29661.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320667315|gb|EFX34273.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323173041|gb|EFZ58672.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli LT-68]
 gi|323183202|gb|EFZ68599.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 1357]
 gi|323377462|gb|ADX49730.1| Ribonucleoside-diphosphate reductase [Escherichia coli KO11]
 gi|323935630|gb|EGB31947.1| ribonucleotide reductase [Escherichia coli E1520]
 gi|323946352|gb|EGB42381.1| ribonucleotide reductase [Escherichia coli H120]
 gi|323960578|gb|EGB56205.1| ribonucleotide reductase [Escherichia coli H489]
 gi|323971479|gb|EGB66714.1| ribonucleotide reductase [Escherichia coli TA007]
 gi|324020305|gb|EGB89524.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 117-3]
 gi|324120035|gb|EGC13912.1| ribonucleotide reductase [Escherichia coli E1167]
 gi|331036835|gb|EGI09059.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H736]
 gi|331063082|gb|EGI34995.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA271]
 gi|331073484|gb|EGI44805.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H591]
 gi|332103018|gb|EGJ06364.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
 gi|332344558|gb|AEE57892.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli UMNK88]
          Length = 319

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|218680499|ref|ZP_03528396.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli
           CIAT 894]
          Length = 324

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 123/347 (35%), Gaps = 35/347 (10%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +N+  K +   R+ + N++   K    W        N W+P +VP+ +D+  W +   LT
Sbjct: 1   MNISIKPISRVRAINWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LT 54

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             E+ +  R        +++      + +      P     L   +F EAVH+ ++  I 
Sbjct: 55  AAEQQLTIRVFTGLTLLDTIQNGVGSIRLMEDAITPHEEAVLSNVSFMEAVHARSYSSIF 114

Query: 136 TSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           ++L         +    E   +  K+   ++   +                         
Sbjct: 115 STLCSTPDVDNAYRWSEENEFLQRKSALIMEQYASGDPLKKKV---------------AS 159

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           V  E   FY+GF   +      K+   A+  + I+RDE++H  +      +         
Sbjct: 160 VFLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLELLGEER 219

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            +E +  +  +L E    E  Y      +  VGL     ++++ + AN+    +G E LF
Sbjct: 220 RQELKDFAFDLLLELYDNEARYTEALYDR--VGLT-EDVKEFLHYNANKALMNLGYEALF 276

Query: 314 KYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
                  NP    +   +  +  +FF    + Y  G  +      WD
Sbjct: 277 PAEACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|158518255|gb|AAC48087.2| Hypothetical protein F58F9.1 [Caenorhabditis elegans]
          Length = 500

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 19/209 (9%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L   ++   + P+ +   WE Y  A    W   EV +  D++ W+    LT DER  
Sbjct: 307 EPLLAPNNNRFVVHPIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWE---ILTSDERQF 363

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           I   L FFA+S+ +V  N+       +   E R +   Q   E +HS  +  ++ +   D
Sbjct: 364 ISSILAFFAASDGIVTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRD 423

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
           + E   LFN       I AKA+W L++              D +  F + L     V EG
Sbjct: 424 DAERNILFNAITTFKFIKAKADWCLRWI------------SDHNAPFSERLAAVAAV-EG 470

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYI 227
           ++F + FA I  L +   + G+    + I
Sbjct: 471 IFFSSSFAAIFWLKKRGLLPGLTHSNELI 499


>gi|163939261|ref|YP_001644145.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           weihenstephanensis KBAB4]
 gi|229010750|ref|ZP_04167947.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           DSM 2048]
 gi|229132251|ref|ZP_04261107.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST196]
 gi|229166287|ref|ZP_04294046.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH621]
 gi|163861458|gb|ABY42517.1| Ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
           KBAB4]
 gi|228617232|gb|EEK74298.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           AH621]
 gi|228651189|gb|EEL07168.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST196]
 gi|228750424|gb|EEM00253.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
           DSM 2048]
          Length = 322

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 126/309 (40%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIV 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q +++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFTELSAEEQQEVQTETQELLMELYEIELAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|284922618|emb|CBG35706.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           042]
          Length = 319

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQKLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMKKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|320173468|gb|EFW48667.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           dysenteriae CDC 74-1112]
          Length = 319

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKNFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|261753311|ref|ZP_05997020.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 3 str. 686]
 gi|261743064|gb|EEY30990.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 3 str. 686]
          Length = 327

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 115/330 (34%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W++   L   E+ +  R     
Sbjct: 18  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 71

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L L     + + 
Sbjct: 72  TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 131

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   L                              V  E   FY+GF  
Sbjct: 132 WSEENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYL 176

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 177 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 236

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y         VGL     ++++ + AN+    +G E LF       NP    +
Sbjct: 237 LYDNEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 293

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +    + +
Sbjct: 294 LSPNADENHDFFSGSGSSYVIGKAVATEDE 323


>gi|218706176|ref|YP_002413695.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UMN026]
 gi|293406173|ref|ZP_06650099.1| ribonucleotide reductase beta subunit [Escherichia coli FVEC1412]
 gi|298381910|ref|ZP_06991507.1| ribonucleoside-diphosphate reductase subunit beta [Escherichia coli
           FVEC1302]
 gi|300898656|ref|ZP_07116977.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 198-1]
 gi|301019059|ref|ZP_07183270.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 69-1]
 gi|331674197|ref|ZP_08374957.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA280]
 gi|218433273|emb|CAR14173.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli UMN026]
 gi|291426179|gb|EFE99211.1| ribonucleotide reductase beta subunit [Escherichia coli FVEC1412]
 gi|298277050|gb|EFI18566.1| ribonucleoside-diphosphate reductase subunit beta [Escherichia coli
           FVEC1302]
 gi|300357684|gb|EFJ73554.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 198-1]
 gi|300399412|gb|EFJ82950.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 69-1]
 gi|331068291|gb|EGI39686.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA280]
          Length = 319

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 121/326 (37%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +  +                       V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDNPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      + + +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKSQEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|15803196|ref|NP_289228.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 EDL933]
 gi|15832793|ref|NP_311566.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. Sakai]
 gi|168750919|ref|ZP_02775941.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|168755421|ref|ZP_02780428.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|168762471|ref|ZP_02787478.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|168768767|ref|ZP_02793774.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|168774792|ref|ZP_02799799.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|168778658|ref|ZP_02803665.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|168787931|ref|ZP_02812938.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|168800561|ref|ZP_02825568.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|195938430|ref|ZP_03083812.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808703|ref|ZP_03251040.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208813382|ref|ZP_03254711.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208819985|ref|ZP_03260305.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209400851|ref|YP_002272142.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|217327155|ref|ZP_03443238.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|254794623|ref|YP_003079460.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. TW14359]
 gi|261225973|ref|ZP_05940254.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256769|ref|ZP_05949302.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli O157:H7 str. FRIK966]
 gi|12517115|gb|AAG57786.1|AE005496_9 ribonucleoside-diphosphate reductase 2, beta chain [Escherichia
           coli O157:H7 str. EDL933]
 gi|13363010|dbj|BAB36962.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           O157:H7 str. Sakai]
 gi|187769524|gb|EDU33368.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188015002|gb|EDU53124.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|189003218|gb|EDU72204.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189357305|gb|EDU75724.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189362069|gb|EDU80488.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189367242|gb|EDU85658.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|189372097|gb|EDU90513.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|189377142|gb|EDU95558.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|208728504|gb|EDZ78105.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208734659|gb|EDZ83346.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208740108|gb|EDZ87790.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209162251|gb|ACI39684.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|209762240|gb|ACI79432.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
           coli]
 gi|209762242|gb|ACI79433.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
           coli]
 gi|209762246|gb|ACI79435.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
           coli]
 gi|217319522|gb|EEC27947.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|254594023|gb|ACT73384.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Escherichia coli O157:H7 str. TW14359]
 gi|320189007|gb|EFW63666.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640665|gb|EFX10201.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. G5101]
 gi|326338609|gb|EGD62435.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. 1044]
 gi|326342863|gb|EGD66631.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O157:H7 str. 1125]
          Length = 319

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|187734239|ref|YP_001881572.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           CDC 3083-94]
 gi|187431231|gb|ACD10505.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella boydii
           CDC 3083-94]
          Length = 319

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETSW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|323159821|gb|EFZ45793.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli E128010]
          Length = 319

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K++  A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLINTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|331648397|ref|ZP_08349485.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M605]
 gi|331042144|gb|EGI14286.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M605]
          Length = 319

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQTRREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|253772463|ref|YP_003035294.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162613|ref|YP_003045721.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           B str. REL606]
 gi|297519661|ref|ZP_06938047.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           OP50]
 gi|242378238|emb|CAQ33013.1| nrdF, subunit of ribonucleoside-diphosphate reductase 2, beta
           subunit dimer and ribonucleoside-diphosphate reductase 2
           [Escherichia coli BL21(DE3)]
 gi|253323507|gb|ACT28109.1| Ribonucleoside-diphosphate reductase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974514|gb|ACT40185.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           B str. REL606]
 gi|253978681|gb|ACT44351.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           BL21(DE3)]
          Length = 319

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G +PLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYKPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|215487997|ref|YP_002330428.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215266069|emb|CAS10489.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 319

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|325677552|ref|ZP_08157215.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
 gi|325551623|gb|EGD21322.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
          Length = 322

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 73/332 (21%), Positives = 127/332 (38%), Gaps = 34/332 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P ++P+ +DLA W +   LTD ER M  R     
Sbjct: 13  NWNRVPDPKDAEVWD---RLTGNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFN 147
              ++  A    +A+      P     L   AF E+VH+ ++  I ++L         F 
Sbjct: 67  TLLDTAQATVGAVAMIADAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTRQIDAAFE 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA   + Y +   + +                    V+ E   FY+GF  
Sbjct: 127 WSERNPHLQRKAQIVVDYYRGDDALARK---------------AASVMLESFLFYSGFYL 171

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +             ++ +  +L  
Sbjct: 172 PMYWASHGKLTNTADLIRLIIRDEAVHGYYIGYKCRKALERLDASARDAHRRYTYALLET 231

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+AYA +      VG  A     YM+F AN+    +G EP+F+ +E   NP    +
Sbjct: 232 LYANEVAYAADLY--DEVGWTAEVVS-YMRFNANKALANLGYEPMFRASECQVNPAILSA 288

Query: 325 EVIDLKKEKNFFETRVTEY----QQGAE-LKW 351
                 +  +FF    + Y    Q+  E + W
Sbjct: 289 LDPGAGENHDFFSGSGSAYVIGKQKPTEDVDW 320


>gi|326336655|ref|ZP_08202823.1| ribonucleoside-diphosphate reductase [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691125|gb|EGD33096.1| ribonucleoside-diphosphate reductase [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 319

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 70/320 (21%), Positives = 115/320 (35%), Gaps = 23/320 (7%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    +         W+ +EV    D+  +KS   L+  E+  +KR L   A
Sbjct: 7   RENYKPFEYPEVMKFVDMMHQTFWVHSEVEFTADIQDFKS--NLSLIEKEAVKRALLGIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E          +Y     PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QVEV-AVKTFWGDLYDIFPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNNE--FETLL 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           EVP    +     +Y                 +  ++ +  F ++ E    ++ FA ILS
Sbjct: 122 EVPIFKERNGVLKEYL------------AKNRENAMERILFFTLIIENASLFSQFATILS 169

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  +A    +   DE +H N GI ++  I  ENP   TK  ++++   + E  
Sbjct: 170 FTRFKGYMKNVANIIAWTSIDEQVHANAGIYILKTIFEENPEFRTKA-KEEATQFIREYI 228

Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
           LLE         +G +          YM++  +    Q+ L   F  T     P  W  E
Sbjct: 229 LLEDKMLDWIFEEGELDFFTKKDLANYMRYRLDDALTQLDLGKPFGITAEEAKPMLWFEE 288

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            + + +  +FF  R T Y +
Sbjct: 289 EVFVNELDDFFAKRPTAYTK 308


>gi|281179683|dbj|BAI56013.1| ribonucleoside-diphosphate reductase beta subunit [Escherichia coli
           SE15]
          Length = 319

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|190893561|ref|YP_001980103.1| ribonucleoside-diphosphate reductase, beta subunit [Rhizobium etli
           CIAT 652]
 gi|190698840|gb|ACE92925.1| ribonucleoside-diphosphate reductase protein, beta subunit
           [Rhizobium etli CIAT 652]
          Length = 324

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 124/347 (35%), Gaps = 35/347 (10%)

Query: 17  VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +N+  K +   R+ + N++   K    W        N W+P +VP+ +D+  W +   LT
Sbjct: 1   MNISIKPISRVRAINWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LT 54

Query: 76  DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
             E+ +  R        +++      + +      P     L   +F EAVH+ ++  I 
Sbjct: 55  AAEQQLTIRVFTGLTLLDTIQNGVGAIRLMEDAMTPHEEAVLSNVSFMEAVHARSYSSIF 114

Query: 136 TSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           ++L       + +    E   +  K+   ++   +  +                      
Sbjct: 115 STLCSTPDIDDAYRWSEENEFLQRKSALIMEQYGSGDALKKKV---------------AS 159

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           V  E   FY+GF   +      K+   A+  + I+RDE++H  +      +         
Sbjct: 160 VFLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEER 219

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            ++ +  +  +L E    E  Y         +GL     ++++ + AN+    +G E LF
Sbjct: 220 RQQIKDFAFDLLLELYDNEARYTEALYDG--LGLT-EDVKKFLHYNANKALMNLGYEALF 276

Query: 314 KYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
                  NP    +   +  +  +FF    + Y  G  +      WD
Sbjct: 277 PAEACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|293412034|ref|ZP_06654757.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|291468805|gb|EFF11296.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
          Length = 319

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|332087397|gb|EGI92525.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           boydii 5216-82]
          Length = 319

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+    ++  LT  E+ +  R     
Sbjct: 10  NWNKITDDKDLEVWN---RLTSNFWLPEKVPLSNDIP---ARQTLTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   + P    +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKIPLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|300941043|ref|ZP_07155562.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 21-1]
 gi|300454207|gb|EFK17700.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 21-1]
          Length = 319

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKNFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|163844498|ref|YP_001622153.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           ATCC 23445]
 gi|163675221|gb|ABY39331.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 329

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 115/330 (34%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W++   L   E+ +  R     
Sbjct: 20  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L L     + + 
Sbjct: 74  TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   L                              V  E   FY+GF  
Sbjct: 134 WSEENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 179 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y         VGL     ++++ + AN+    +G E LF       NP    +
Sbjct: 239 LYDNEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 295

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +    + +
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAVATEDE 325


>gi|94676795|ref|YP_588829.1| ribonucleotide-diphosphate reductase subunit beta [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94219945|gb|ABF14104.1| ribonucleoside-diphosphate reductase, beta subunit [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 376

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 69/338 (20%), Positives = 130/338 (38%), Gaps = 24/338 (7%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
            + +K   + +   L    +V +    KY    +      +  W P EV +  D   ++ 
Sbjct: 6   FSPKKNNQLLEPMFLGQSVNVVRFDQQKYESFEKLIEKQLSFFWRPEEVDISLDRIDYQ- 64

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
              L   E+ +   N+ +    +S+   +  +A+   +S PE   ++   AF E +HS +
Sbjct: 65  --ALPQHEKHIFISNIKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122

Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDL 189
           + +II ++  D   +F+       I  +A     +   L   + +     + +      L
Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNTEILKRAKDIAAFYDDLIQMTSYFHLFGEGNHSINGKL 182

Query: 190 FVFYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
            +                    E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 183 VIVNQHELKKKLYLCLMSINALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALH 242

Query: 235 LNFGIDVINQIK--IENPHLWTK--EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
           L     ++N ++   ++P +     E Q  S  +   A   E  +A      G  +GLN 
Sbjct: 243 LAGTQHMLNLMRLGKDDPEMADIALECQHDSYHLFLXAANQEKDWASYLFRDGSMIGLNE 302

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   + L+  F    NP PW++  +
Sbjct: 303 EILCQYIEYITNIRMQAVLLDLPFATRSNPIPWINSWL 340


>gi|327189837|gb|EGE56975.1| ribonucleoside-diphosphate reductase protein, beta subunit
           [Rhizobium etli CNPAF512]
          Length = 324

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 114/330 (34%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W +   LT  E+ +  R        
Sbjct: 15  NWNRIEDEKDLEVWNRLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLL 71

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++      + +      P     L   +F EAVH+ ++  I ++L       + +    
Sbjct: 72  DTIQNGVGAIRLMEDAMTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYRWSE 131

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  K+   ++   +                         V  E   FY+GF   + 
Sbjct: 132 ENEFLQRKSALIMEQYGSGDPLKKKV---------------ASVFLESFLFYSGFYLPMY 176

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          +E +  +  +L E   
Sbjct: 177 WSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEERRQEIKDFAFDLLLELYD 236

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E  Y         VGL     ++++ + AN+    +G E LF       NP    +   
Sbjct: 237 NEARYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSP 293

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 294 NADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|331658787|ref|ZP_08359729.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA206]
 gi|315298701|gb|EFU57955.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 16-3]
 gi|331053369|gb|EGI25398.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA206]
          Length = 319

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLLPDTLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFASRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|209551073|ref|YP_002282990.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209536829|gb|ACI56764.1| Ribonucleoside-diphosphate reductase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 324

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 116/333 (34%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L       + + 
Sbjct: 69  TLLDTIQNGVGAVGLMEDAVTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   ++  +                          V  E   FY+GF  
Sbjct: 129 WSEENEFLQRKSTLIIEQYRCGDPLKKKV---------------ASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEERKQEIKDFAFDLLLE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VGL     ++++ + AN+    +G E LF       NP    +
Sbjct: 234 LYDNEARYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|191167101|ref|ZP_03028922.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B7A]
 gi|260856787|ref|YP_003230678.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|309795135|ref|ZP_07689554.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|331664233|ref|ZP_08365139.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA143]
 gi|190902883|gb|EDV62611.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli B7A]
 gi|257755436|dbj|BAI26938.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|308121106|gb|EFO58368.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|323154887|gb|EFZ41079.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli EPECa14]
 gi|331058164|gb|EGI30145.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli TA143]
          Length = 319

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|197284313|ref|YP_002150185.1| ribonucleotide-diphosphate reductase subunit beta [Proteus
           mirabilis HI4320]
 gi|194681800|emb|CAR41036.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis
           HI4320]
          Length = 322

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 61/335 (18%), Positives = 120/335 (35%), Gaps = 31/335 (9%)

Query: 28  RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
           R +      ++     E +     N W+P ++P+ +D+  W +   LT  E+ +  R   
Sbjct: 8   RVNAINWNRIEDEKDLEVWNRLTMNFWLPEKIPLSNDIPSWNT---LTQAEKQLTIRVFT 64

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--EL 145
                +++        +      P     L    F EAVH+ ++  I ++L L     + 
Sbjct: 65  GLTLLDTIQNTVGAPTLMPDAQTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDDA 124

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           +    E   +  K++  L+Y Q                          V  E   FY+GF
Sbjct: 125 YRWSEENTYLQKKSDIILRYYQDSDPLKKKI---------------ASVFLESFLFYSGF 169

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
              +      K+   A+  + I+RDE++H  +         +    L  +  +  + ++L
Sbjct: 170 YLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQNQLLNKSSLEKQNIKDFAFSLL 229

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMS 324
            +    E+ Y  +      VG      ++++ + AN+    +G E LF     N  P + 
Sbjct: 230 LDLYDNEVKYTEDLY--DSVGWT-EDVKKFLHYNANKALMNLGYEALFPDEITNVSPAIL 286

Query: 325 EVI--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
             +  D  +  +FF    + Y  G  +      WD
Sbjct: 287 SSLSPDANENHDFFSGSGSSYVIGKTINTEDDDWD 321


>gi|260869355|ref|YP_003235757.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O111:H- str. 11128]
 gi|257765711|dbj|BAI37206.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
           coli O111:H- str. 11128]
 gi|323180097|gb|EFZ65649.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 1180]
          Length = 319

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y +E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTNELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|261342124|ref|ZP_05969982.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315455|gb|EFC54393.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 319

 Score =  142 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 121/331 (36%), Gaps = 33/331 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+      P     +   +F EAVH+ ++  I ++L   +     ++   
Sbjct: 67  DTIQNTVGAPALMSDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDTAYDWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  S+  KAN  L+Y Q                          V  E   FY+GF   + 
Sbjct: 127 ECESLQRKANLVLEYYQADDPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          +E +  +  +L +   
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSEARREELKGFALDLLMDLYD 231

Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
            E++Y        G+        + ++ + AN+    +G E LF       NP    +  
Sbjct: 232 NELSYTEALYAGSGWE----DEVKAFLCYNANKALMNLGYEALFPPDMADVNPAILAALS 287

Query: 327 IDLKKEKNFFETRVTEYQQGAELK-----WD 352
            +  +  +FF    + Y  G  ++     WD
Sbjct: 288 PNADENHDFFSGSGSSYVMGKAVETEDEDWD 318


>gi|256015100|ref|YP_003105109.1| ribonucleotide-diphosphate reductase beta subunit [Brucella microti
           CCM 4915]
 gi|255997760|gb|ACU49447.1| ribonucleotide-diphosphate reductase beta subunit [Brucella microti
           CCM 4915]
          Length = 329

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 113/327 (34%), Gaps = 28/327 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W++   L   E+ +  R        
Sbjct: 20  NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 76

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++      + +      P     L   +F EAVH+ ++  I ++L L     + +    
Sbjct: 77  DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  K+   L                              V  E   FY+GF   + 
Sbjct: 137 ENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYLPMY 181

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          +E +  +  +L E   
Sbjct: 182 WSSRAKLTNTADLIRLIIRDEAVHGYYIGHKFQRALEVLSEEKRQEIKDFAFELLLELYD 241

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y         VGL     ++++ + AN+    +G E LF       NP    +   
Sbjct: 242 NEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSP 298

Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
           +  +  +FF    + Y   +    + +
Sbjct: 299 NADENHDFFSGSGSSYVIGKAVATEDE 325


>gi|331654159|ref|ZP_08355159.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M718]
 gi|331047541|gb|EGI19618.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli M718]
          Length = 319

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILTA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|17989274|ref|NP_541907.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 1 str. 16M]
 gi|17985137|gb|AAL54171.1| ribonucleoside-diphosphate reductase beta chain [Brucella
           melitensis bv. 1 str. 16M]
          Length = 335

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 113/327 (34%), Gaps = 28/327 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W++   L   E+ +  R        
Sbjct: 26  NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTTRVFTGLTLL 82

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++      + +      P     L   +F EAVH+ ++  I ++L L     + +    
Sbjct: 83  DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 142

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  K+   L                              V  E   FY+GF   + 
Sbjct: 143 ENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYLPMY 187

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          +E +  +  +L E   
Sbjct: 188 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLELYD 247

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y         VGL     ++++ + AN+    +G E LF       NP    +   
Sbjct: 248 NEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSP 304

Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
           +  +  +FF    + Y   +    + +
Sbjct: 305 NADENHDFFSGSGSSYVIGKAVATEDE 331


>gi|300741626|ref|ZP_07071647.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
           dentocariosa M567]
 gi|300380811|gb|EFJ77373.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
           dentocariosa M567]
          Length = 325

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 132/349 (37%), Gaps = 36/349 (10%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            ++V++ D  +     + N+L   K    W+       N W+P +VP+ +D+  WK+   
Sbjct: 2   SEKVHLVDHPI--EAINWNRLEDDKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT--- 53

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT +E+ +  R        +++      +++                AF E+VH+ ++  
Sbjct: 54  LTAEEKELTMRVFTGLTLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSS 113

Query: 134 IITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I ++L   +   + F    E   +  KA   L Y                          
Sbjct: 114 IFSTLSSTKEIDDAFRWASENEHLQKKAKIILAYYTGDDPLKKKV--------------- 158

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
              + E   FY+GF   +      K+   A+  + I+RDE++H  +      +   +   
Sbjct: 159 ASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKESP 218

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
               E ++ +  +L+E    E+AY H       VG +    ++++ + AN+    +G E 
Sbjct: 219 ERQAELKEYTFNLLYELYENEVAYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEA 275

Query: 312 LFKYT-ENPFPWMSEVI--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +F  +  N  P +   +  +  +  +FF    + Y  G  +      WD
Sbjct: 276 MFPASVTNVSPAILSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324


>gi|311113720|ref|YP_003984942.1| ribonucleotide-diphosphate reductase subunit beta [Rothia
           dentocariosa ATCC 17931]
 gi|310945214|gb|ADP41508.1| ribonucleotide-diphosphate reductase subunit beta [Rothia
           dentocariosa ATCC 17931]
          Length = 325

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/349 (18%), Positives = 132/349 (37%), Gaps = 36/349 (10%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            ++V++ D  +     + N+L   K    W+       N W+P +VP+ +D+  WK+   
Sbjct: 2   SEKVHLVDHPI--EAINWNRLEDDKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT--- 53

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           LT +E+ +  R        +++      +++                AF E+VH+ ++  
Sbjct: 54  LTAEEKELTMRVFTGLTLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSS 113

Query: 134 IITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I ++L   +   + F    E   +  KA   L Y                          
Sbjct: 114 IFSTLSSTKEIDDAFRWASENEHLQKKAKIILAYYTGDDPLKKKV--------------- 158

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
              + E   FY+GF   +      K+   A+  + I+RDE++H  +      +   +   
Sbjct: 159 ASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKESP 218

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
               E ++ +  +L+E    E++Y H       VG +    ++++ + AN+    +G E 
Sbjct: 219 ERQAELKEYTFNLLYELYENEVSYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEA 275

Query: 312 LFKYT-ENPFPWMSEVI--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +F  +  N  P +   +  +  +  +FF    + Y  G  +      WD
Sbjct: 276 MFPASVTNVSPAILSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324


>gi|157371959|ref|YP_001479948.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
           proteamaculans 568]
 gi|157323723|gb|ABV42820.1| Ribonucleoside-diphosphate reductase [Serratia proteamaculans 568]
          Length = 323

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 118/330 (35%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W       +N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 14  NWNIIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWAT---LTPKEQQLTIRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++       A+      P         +F EAVH+ ++  I ++L       + + 
Sbjct: 68  TLLDTIQNTVGAPALIADAITPHEEAVYSNISFMEAVHARSYSSIFSTLCQTPDVDDAYR 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA+  L + ++                         V  E   FY+GF  
Sbjct: 128 WSEENRALQKKASIILAHYRSDDPLMKKV---------------ASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +
Sbjct: 173 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDAARRQQVKNFAFDLLQD 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E      VG      + ++ + AN+    +G E LF       NP    +
Sbjct: 233 LYDNEVRYTEELYDG--VGWT-EDVKTFLHYNANKALMNLGYEALFPPSMAEVNPAILSA 289

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +    + D
Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAVNTEDD 319


>gi|306840845|ref|ZP_07473592.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           BO2]
 gi|306289240|gb|EFM60489.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           BO2]
          Length = 327

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 116/330 (35%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W++   L   E+ +  R     
Sbjct: 18  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 71

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L L     + + 
Sbjct: 72  TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 131

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   L      +                       V  E   FY+GF  
Sbjct: 132 WSEENEFLQRKSTLILDQYHADNPLKKKI---------------ASVFLESFLFYSGFYL 176

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 177 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 236

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y         VGL     ++++ + AN+    +G E LF       NP    +
Sbjct: 237 LYDNEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 293

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +    + +
Sbjct: 294 LSPNADENHDFFSGSGSSYVIGKAVATEDE 323


>gi|153949141|ref|YP_001400043.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960636|gb|ABS48097.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia
           pseudotuberculosis IP 31758]
          Length = 323

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 122/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   LT  E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LTPHEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L L     + +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  KA+  LQ+                            V  E   FY+GF   + 
Sbjct: 131 DNGPLQKKADIILQHYHNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +   +  +E +  +  +L +   
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDSVHRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +      VG      ++++ + AN+    +G E LF  ++   +P    +   
Sbjct: 236 NEVRYTEDLYDH--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|324005772|gb|EGB74991.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 57-2]
          Length = 319

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETTW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|253689503|ref|YP_003018693.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756081|gb|ACT14157.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 320

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 120/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   L   ER +  R        
Sbjct: 11  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWST---LNARERQLTIRVFTGLTLL 67

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L L     + +    
Sbjct: 68  DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P++  K++  L + ++                         V  E   FY+GF   + 
Sbjct: 128 ENPALQKKSDIILSHYRSDDPLMKKV---------------ASVFLESFLFYSGFYLPMY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +   
Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKADPARQQQVKNFAYDLLQDLYD 232

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+ Y  E      VG      ++++ + AN+    +G E LF       NP    +   
Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319


>gi|25027435|ref|NP_737489.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           efficiens YS-314]
 gi|259506419|ref|ZP_05749321.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium efficiens YS-314]
 gi|23492716|dbj|BAC17689.1| putative ribonucleotide reductase [Corynebacterium efficiens
           YS-314]
 gi|259165992|gb|EEW50546.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium efficiens YS-314]
          Length = 339

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 120/319 (37%), Gaps = 30/319 (9%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           + +     N W+P ++P+ +D+  W S   +++ E L   R        +++      ++
Sbjct: 40  DIWNRLTTNFWLPEKIPVSNDIQKWNS---MSEAEHLATLRVFTGLTLLDTIQGTVGAVS 96

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
           +    +       L   +F E+VH+ ++  I  +L       E F   R    +  KA  
Sbjct: 97  MIPDATTHHEEAVLTNISFMESVHAKSYSNIFMTLASTPEINEAFRWSRHNEHLQYKAKR 156

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L Y Q  S+P+                 +  V+ E + FY+GF   L +    K+   A
Sbjct: 157 ILDYYQQDSTPARKK--------------IASVMLESLLFYSGFYLPLRMASIGKLTNTA 202

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RDE++H  +      +               ++  +L +    E+ Y      
Sbjct: 203 DVIRLIIRDEAIHGYYIGYKYQKHIATLSPEKQATNHDEAVELLLDLYDNELEYTRHVYD 262

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEV-IDLKKEKNFFET 338
              +G +      ++++ AN+    +G E +F   +  F    M+ +     +  +FF  
Sbjct: 263 D--LGWS-EDVSAFLRYNANKAMQNLGYESIFPVDQCKFDPGVMTSLDPSSNENHDFFSG 319

Query: 339 RVTEYQQG-----AELKWD 352
             + Y  G     ++  WD
Sbjct: 320 SGSSYVIGDVEATSDEDWD 338


>gi|218701171|ref|YP_002408800.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           IAI39]
 gi|218371157|emb|CAR18988.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli IAI39]
          Length = 319

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLTNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|116253995|ref|YP_769833.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258643|emb|CAK09747.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 324

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 118/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +    + P     L   +F EAVH+ ++  I ++L       + + 
Sbjct: 69  TLLDTIQNGVGSIRLMEDAATPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   ++  ++                         V  E   FY+GF  
Sbjct: 129 WSEENEFLQRKSALIMEQYRSGDPLKKKV---------------ASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMVRLIIRDEAVHGYYIGYKFQRGLERLGDERKQEIKDFAFELLLE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VGL     ++++ + AN+    +G E LF       NP    +
Sbjct: 234 LYDNEAKYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|47213105|emb|CAF89525.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 198

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 9/183 (4%)

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
                  +        +    +  V +   EG++F   FA I  L +   M G+    + 
Sbjct: 11  HRWKKADWALNWIGNQKASYGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNEL 70

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           I RDE LH +F   +   +         K   Q    ++  A  +E  +  E +P   +G
Sbjct: 71  ISRDEGLHCDFACLMFKHLL-------HKPSAQTVGAIIRNAVEIEQEFLTEALPVKLIG 123

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           +N    ++Y++F+A+R   ++G   ++   ENPF +M E I L+ + NFFE RV EYQ+ 
Sbjct: 124 MNCQLMKRYIEFVADRLLLELGFAKIY-RAENPFDFM-ENISLEGKTNFFEKRVGEYQRM 181

Query: 347 AEL 349
             +
Sbjct: 182 GVM 184


>gi|23500072|ref|NP_699512.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           1330]
 gi|62317763|ref|YP_223616.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 1 str. 9-941]
 gi|83269749|ref|YP_419040.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis biovar Abortus 2308]
 gi|148558197|ref|YP_001257348.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ovis
           ATCC 25840]
 gi|161620390|ref|YP_001594276.1| ribonucleotide-diphosphate reductase subunit beta [Brucella canis
           ATCC 23365]
 gi|189023015|ref|YP_001932756.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           S19]
 gi|254691263|ref|ZP_05154517.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 6 str. 870]
 gi|254695435|ref|ZP_05157263.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 3 str. Tulya]
 gi|254699051|ref|ZP_05160879.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254699599|ref|ZP_05161427.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 5 str. 513]
 gi|254706144|ref|ZP_05167972.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M163/99/10]
 gi|254711557|ref|ZP_05173368.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis B2/94]
 gi|254712154|ref|ZP_05173965.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M644/93/1]
 gi|254715225|ref|ZP_05177036.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M13/05/1]
 gi|254720036|ref|ZP_05181847.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           83/13]
 gi|254732497|ref|ZP_05191075.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 4 str. 292]
 gi|256029807|ref|ZP_05443421.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M292/94/1]
 gi|256059454|ref|ZP_05449656.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           neotomae 5K33]
 gi|256157977|ref|ZP_05455895.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M490/95/1]
 gi|256253064|ref|ZP_05458600.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           B1/94]
 gi|256256449|ref|ZP_05461985.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 9 str. C68]
 gi|260167086|ref|ZP_05753897.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           F5/99]
 gi|260544998|ref|ZP_05820819.1| ribonucleotide reductase [Brucella abortus NCTC 8038]
 gi|260568371|ref|ZP_05838840.1| ribonucleotide reductase [Brucella suis bv. 4 str. 40]
 gi|260756870|ref|ZP_05869218.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 6 str. 870]
 gi|260760301|ref|ZP_05872649.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 4 str. 292]
 gi|260763541|ref|ZP_05875873.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260882684|ref|ZP_05894298.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 9 str. C68]
 gi|261215815|ref|ZP_05930096.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 3 str. Tulya]
 gi|261216944|ref|ZP_05931225.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M13/05/1]
 gi|261220160|ref|ZP_05934441.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           B1/94]
 gi|261313587|ref|ZP_05952784.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M163/99/10]
 gi|261319174|ref|ZP_05958371.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis B2/94]
 gi|261319814|ref|ZP_05959011.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M644/93/1]
 gi|261323425|ref|ZP_05962622.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           neotomae 5K33]
 gi|261750056|ref|ZP_05993765.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 5 str. 513]
 gi|261756480|ref|ZP_06000189.1| ribonucleotide reductase [Brucella sp. F5/99]
 gi|265985045|ref|ZP_06097780.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           83/13]
 gi|265986823|ref|ZP_06099380.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M292/94/1]
 gi|265996493|ref|ZP_06109050.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M490/95/1]
 gi|297249809|ref|ZP_06933510.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella
           abortus bv. 5 str. B3196]
 gi|306839412|ref|ZP_07472226.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. NF
           2653]
 gi|306845616|ref|ZP_07478185.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           BO1]
 gi|23463663|gb|AAN33517.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella suis
           1330]
 gi|62197956|gb|AAX76255.1| NrdF, ribonucleoside-diphosphate reductase, beta subunit [Brucella
           abortus bv. 1 str. 9-941]
 gi|82940023|emb|CAJ13054.1| Ribonucleotide reductase [Brucella melitensis biovar Abortus 2308]
 gi|148369482|gb|ABQ62354.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella ovis
           ATCC 25840]
 gi|161337201|gb|ABX63505.1| Ribonucleoside-diphosphate reductase [Brucella canis ATCC 23365]
 gi|189021589|gb|ACD74310.1| Ribonucleotide reductase [Brucella abortus S19]
 gi|260098269|gb|EEW82143.1| ribonucleotide reductase [Brucella abortus NCTC 8038]
 gi|260155036|gb|EEW90117.1| ribonucleotide reductase [Brucella suis bv. 4 str. 40]
 gi|260670619|gb|EEX57559.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 4 str. 292]
 gi|260673962|gb|EEX60783.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260676978|gb|EEX63799.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 6 str. 870]
 gi|260872212|gb|EEX79281.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 9 str. C68]
 gi|260917422|gb|EEX84283.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           bv. 3 str. Tulya]
 gi|260918744|gb|EEX85397.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           B1/94]
 gi|260922033|gb|EEX88601.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M13/05/1]
 gi|261292504|gb|EEX96000.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M644/93/1]
 gi|261298397|gb|EEY01894.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis B2/94]
 gi|261299405|gb|EEY02902.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           neotomae 5K33]
 gi|261302613|gb|EEY06110.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M163/99/10]
 gi|261736464|gb|EEY24460.1| ribonucleotide reductase [Brucella sp. F5/99]
 gi|261739809|gb|EEY27735.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 5 str. 513]
 gi|262550790|gb|EEZ06951.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           M490/95/1]
 gi|264659020|gb|EEZ29281.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           pinnipedialis M292/94/1]
 gi|264663637|gb|EEZ33898.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           83/13]
 gi|297173678|gb|EFH33042.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella
           abortus bv. 5 str. B3196]
 gi|306273937|gb|EFM55764.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
           BO1]
 gi|306405535|gb|EFM61800.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. NF
           2653]
          Length = 329

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 115/330 (34%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W++   L   E+ +  R     
Sbjct: 20  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L L     + + 
Sbjct: 74  TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   L                              V  E   FY+GF  
Sbjct: 134 WSEENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 179 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y         VGL     ++++ + AN+    +G E LF       NP    +
Sbjct: 239 LYDNEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 295

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +    + +
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAVATEDE 325


>gi|227112968|ref|ZP_03826624.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 320

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 119/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   L   ER +  R        
Sbjct: 11  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWST---LNARERQLTIRVFTGLTLL 67

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L L     + +    
Sbjct: 68  DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  K++  L + ++                         V  E   FY+GF   + 
Sbjct: 128 ENTALQKKSDIILSHYRSDDPLMKKV---------------ASVFLESFLFYSGFYLPMY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +   
Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKVDSARHQQVKNFAYDLLQDLYD 232

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+ Y  E      VG      ++++ + AN+    +G E LF       NP    +   
Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319


>gi|218663032|ref|ZP_03518962.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli
           IE4771]
          Length = 324

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 116/333 (34%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   +    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRIEDDRDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L       + + 
Sbjct: 69  TLLDTIQNGVGSIRLMEDAVTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   ++   +                         V  E   FY+GF  
Sbjct: 129 WSEENEFLQRKSVLIMEQYGSGDPLKKKI---------------ASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEERRQEIKDFAFDLLLE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VGL     ++++ + AN+    +G E LF       NP    +
Sbjct: 234 LYDNEARYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|183598095|ref|ZP_02959588.1| hypothetical protein PROSTU_01459 [Providencia stuartii ATCC 25827]
 gi|188020253|gb|EDU58293.1| hypothetical protein PROSTU_01459 [Providencia stuartii ATCC 25827]
          Length = 323

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 119/327 (36%), Gaps = 28/327 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P ++P+ +D++ W +   LT  E+ +  R        
Sbjct: 14  NWNRIEDDKDLEVWNRLTTNFWLPEKIPLSNDISSWNT---LTAAEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L       + +    
Sbjct: 71  DTIQNTVGAPSLMSDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTSDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA   + Y                         V  V  E   FY+GF   + 
Sbjct: 131 ENSALQNKAKIIMSYY---------------CDSHPLKKKVASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +  ++      KE +  + ++L +   
Sbjct: 176 WSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLLKYDEKTQKEIKDFTFSLLFDLYE 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            E+ Y  E      VG      ++++ + AN+    +G E LF       +P    +   
Sbjct: 236 NEVNYTQELY--DTVGWT-EDVKKFLHYNANKALMNLGYEALFPDVVTDVSPAILSALSP 292

Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
           D  +  +FF    + Y   +    + D
Sbjct: 293 DANENHDFFSGSGSSYVIGKAVSTEDD 319


>gi|33620698|ref|NP_891801.1| aerobic NDP reductase small subunit [Enterobacteria phage RB49]
 gi|33438568|gb|AAL15125.2| aerobic NDP reductase small subunit [Enterobacteria phage RB49]
          Length = 386

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 124/353 (35%), Gaps = 40/353 (11%)

Query: 17  VNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           V++ ++ M            +   ++    E      +  W P E+ +  D   +     
Sbjct: 9   VDIMNEPMFLGSGLGIARYDIQ--RHQVFEELIEKQLSFFWRPEEISLATDRIQY---LN 63

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           + D E+     NL +    +S+       A    +S+P    +L    F E +HS ++ +
Sbjct: 64  MGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTLDTWLQTWTFSETIHSRSYTH 123

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ +  +D    F+   + P+I  +A    +Y   +            D  + ++     
Sbjct: 124 IMRNCFIDPASEFDQIIDNPAIMKRAESIGKYYDDVLYWIRKYENAKEDLRYWEERDDQT 183

Query: 194 VV---------------------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
            +                            E + FY  FA   S      + G A+  ++
Sbjct: 184 ALDDARRFFEDTKRDLMASIYLCAHCVNALEAIRFYVSFACTFSFAERGLLEGNAKIMKF 243

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPK 282
           I RDE LHL     +I Q +            +E + ++  +  +    E  +       
Sbjct: 244 IARDEQLHLKGTQYIIRQWQTGVDGDEWKQIAEELEGEATKIFLDVVEQEKEWVDHLFAM 303

Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
           G    L+    + Y++++A+ R    GL+  F    +P PWM + ++  + +N
Sbjct: 304 GAIPNLSPEILKTYVEYLADSRMRAAGLKSPFSVRRHPLPWMRKWLNSDEVQN 356


>gi|254037718|ref|ZP_04871776.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           1_1_43]
 gi|226839342|gb|EEH71363.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           1_1_43]
          Length = 319

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALMPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|328543067|ref|YP_004303176.1| ribonucleoside-diphosphate reductase, beta subunit [polymorphum
           gilvum SL003B-26A1]
 gi|326412813|gb|ADZ69876.1| Ribonucleoside-diphosphate reductase, beta subunit [Polymorphum
           gilvum SL003B-26A1]
          Length = 325

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 123/339 (36%), Gaps = 32/339 (9%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
           + +  D      L+     E +     N W+P +VP+ +D+  W +   LT  E+ +  R
Sbjct: 7   IRSVPDAVNWNRLRDPKDLEIWNRLTVNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIR 63

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142
                   +++       A+      P     L   AF EAVH+ ++  + ++L      
Sbjct: 64  VFTGLTLLDTIQNMIGAPALMADAITPHEEAVLTNIAFMEAVHARSYSSVFSTLCRTAEV 123

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
            + F    E P + AK+   L       +P                  +  V  E   FY
Sbjct: 124 DDAFRWSAENPQLQAKSRLILNEYDASGTPLKKK--------------IASVFLESFLFY 169

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           +GF   +      K+   A+  + I+RDE++H  +      +          +E +  + 
Sbjct: 170 SGFYLPMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLETVSEAERQEIKDFAF 229

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENP 319
           +++ +   +E  Y         VGL     + ++ + AN+    +G E LF       NP
Sbjct: 230 SLMFDLYAIEAKYTESLCDG--VGLT-EDVKHFLHYNANKALMNLGYEALFPDAVCAVNP 286

Query: 320 FPWMSEVI-DLKKEKNFFETRVTEYQQGAEL-----KWD 352
              M+ +  +  +  +FF    + Y  G  +      WD
Sbjct: 287 -AIMAALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 324


>gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039813|gb|ACT56609.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040683|gb|ACT57479.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 125

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
           MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL
Sbjct: 1   MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA
Sbjct: 61  NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120

Query: 348 ELKWD 352
           ELKWD
Sbjct: 121 ELKWD 125


>gi|213962351|ref|ZP_03390614.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sputigena Capno]
 gi|213955017|gb|EEB66336.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sputigena Capno]
          Length = 319

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/320 (21%), Positives = 119/320 (37%), Gaps = 23/320 (7%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    E   +   + W+ +EV    D+  +KS   L+  E+  +KR L   A
Sbjct: 7   RENYKPFEYPEVMEFVNAMHKSFWVHSEVEFTADIQDFKS--NLSTVEQEAVKRALLGIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E  V       +Y     PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QVEVSV-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLL 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           EVP    + N   +Y                 +  ++ +  F ++ E    ++ FA ILS
Sbjct: 122 EVPIFKERNNILKEYL------------AKNRENAMERILFFTLIIENASLFSQFATILS 169

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    +  +A    +   DE LH N GI ++ +I  E P + T   + ++   +    
Sbjct: 170 FTRFKGYLKNVANIIAWTSIDEQLHANAGIYILKKIFEERPEMKTIA-EHEATNFIRNYI 228

Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSE 325
           LLE         +G +   +      YM++  +    Q+GL+  F  +     P  W  E
Sbjct: 229 LLEDKMLDWIFEQGELEFFSKKDLANYMRYRLDDSLTQLGLDKPFNISGDEAKPMMWFEE 288

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +   +  +FF  R T Y +
Sbjct: 289 EVFSNELDDFFAKRPTAYTK 308


>gi|238759171|ref|ZP_04620339.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae
           ATCC 35236]
 gi|238702587|gb|EEP95136.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae
           ATCC 35236]
          Length = 323

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 123/330 (37%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P ++P+ +D+  W +   LT +E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTSNFWLPEKIPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +     + +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                            V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYHNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +  +    E +  +  +L +   
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNARRLEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +   K  VG      ++++ + AN+    +G E LF  ++   +P    +   
Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPISQAAVSPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|304406354|ref|ZP_07388010.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus
           YK9]
 gi|304344412|gb|EFM10250.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus
           YK9]
          Length = 318

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 117/304 (38%), Gaps = 21/304 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+P+ DD   W     L+D +R +  + LG     +++     +  I
Sbjct: 19  FWNQNIMQFWTDEEIPLSDDKMSW---IELSDAQRELYMKVLGGLTLLDTIQGGVGIPKI 75

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWA 162
             H+   + +  L      E +H+ ++  I T+L   E    +F   +  P +  KA W 
Sbjct: 76  VEHVDGLQRKAVLSFMGMMEQIHAKSYSSIFTTLASTEEIDGVFAWVKTQPQLQNKAEWI 135

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y   +++P                     V+ E   FY+GF   L L    KM    E
Sbjct: 136 SVYYNNITTPKSL-----------YLALAASVLLESYLFYSGFFYPLFLAGQGKMTSSGE 184

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  +   +  ++  +       E   + R ++      E  Y  E    
Sbjct: 185 IIDLILRDESIHGLYVGVLAQEVYRDLTPEERGEADTELRELIDRLHANEEVYTKELYSG 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             VGL A     Y+++  N+    +GL+P+F   E NP  + + +    K+ +FF  +  
Sbjct: 245 --VGL-ADEVLTYVRYNCNKGLMNLGLDPIFPEEEINPIVF-NGISTRTKQHDFFSKKGN 300

Query: 342 EYQQ 345
            Y +
Sbjct: 301 GYVR 304


>gi|91212037|ref|YP_542023.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UTI89]
 gi|117624912|ref|YP_853853.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           APEC O1]
 gi|218559668|ref|YP_002392581.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           S88]
 gi|237706702|ref|ZP_04537183.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           3_2_53FAA]
 gi|91073611|gb|ABE08492.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           UTI89]
 gi|115514036|gb|ABJ02111.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           APEC O1]
 gi|218366437|emb|CAR04189.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli S88]
 gi|226899742|gb|EEH86001.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
           3_2_53FAA]
 gi|294492274|gb|ADE91030.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli IHE3034]
 gi|315284934|gb|EFU44379.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 110-3]
 gi|323951102|gb|EGB46978.1| ribonucleotide reductase [Escherichia coli H252]
 gi|323957111|gb|EGB52836.1| ribonucleotide reductase [Escherichia coli H263]
          Length = 319

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      + + +      +E +  +  +L E
Sbjct: 169 PMYFASRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNQEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      +   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|222102712|ref|YP_002539751.1| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium
           vitis S4]
 gi|221739313|gb|ACM40046.1| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium
           vitis S4]
          Length = 329

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 116/333 (34%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W     L  +E+ +  R     
Sbjct: 20  NWNRINDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSW---AALKPEEQQLTIRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++  +     +      P         +F EAVH+ ++  I ++L       + + 
Sbjct: 74  TLLDTIQTSIGAPTLMEDSITPHEEAVYSNISFMEAVHARSYSSIFSTLCSTSDVDDAYR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   L++ +                       +  V  E   FY+GF  
Sbjct: 134 WSEENEFLQKKSALILEHYRNPD---------------PLKRKIASVFLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      ++   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 179 PMFWSSRARLTNTADMIRLIIRDEAVHGYYIGYKFQRGLEPLSEEQRQETKDFAFDLLLE 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VGL     ++++ + AN+    +G E LF       NP    +
Sbjct: 239 LYDNEAKYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPPEACKVNPAILSA 295

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 328


>gi|157955332|gb|ABW06043.1| NrdF [Bacillus thuringiensis serovar galleriae]
 gi|157955344|gb|ABW06052.1| NrdF [Bacillus thuringiensis serovar tolworthi]
          Length = 322

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYHRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|157955376|gb|ABW06076.1| NrdF [Bacillus thuringiensis serovar morrisoni]
          Length = 322

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYHRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E    
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL      +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +  
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 303 GYVKATNVE 311


>gi|227502986|ref|ZP_03933035.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
 gi|306836783|ref|ZP_07469743.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           accolens ATCC 49726]
 gi|227076047|gb|EEI14010.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
 gi|304567329|gb|EFM42934.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           accolens ATCC 49726]
          Length = 329

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 118/330 (35%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    WE       N W+P +VP+ +DL  WK+   LT+ E+    R     
Sbjct: 20  NWNNIPDDKDLEVWE---RLTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++                AF E+VH+ ++  I  +L       + F 
Sbjct: 74  TLLDTIQGTVGAISLLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y                             + E   FY+GF  
Sbjct: 134 WSEENENLQKKAKIILSYYNGDDPLKKKV---------------ASTLLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +      +E +  +  +  E
Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQEYKKLDEKRQEELKDYTFDLAFE 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 239 LYDNEIDYTEDLY--DELGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +  +   D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDD 325


>gi|152964774|ref|YP_001360558.1| ribonucleotide-diphosphate reductase subunit beta [Kineococcus
           radiotolerans SRS30216]
 gi|151359291|gb|ABS02294.1| Ribonucleoside-diphosphate reductase [Kineococcus radiotolerans
           SRS30216]
          Length = 323

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 117/333 (35%), Gaps = 37/333 (11%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W       +N W+P +VP+ +D+  W+    L   ER +  R     
Sbjct: 14  NWNRLQDDKDLEIWN---RLTSNFWLPEKVPLSNDVQSWQ---NLGAQERTLTLRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P         AF E+VH+ ++  I ++L       E F 
Sbjct: 68  TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSSIFSTLATTREIDEAFA 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +  ++  KA+  L+Y                         V   + E   FY+GF  
Sbjct: 128 WSEDNEALQRKASIVLEYYHGDD---------------PLKRKVASTLLESFLFYSGFFL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      ++   A+  + I+RDE++H  +      +           E +  +  +L+E
Sbjct: 173 PMHFSSRAQLTNTADLVRLIIRDEAVHGYYIGYKFQRGLELVDQAKRDEIKDYAFELLYE 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               E  Y  +      VGL     + ++ + AN+    +G E +F         +   I
Sbjct: 233 LYDNECKYTADLYDG--VGLT-EDVKTFLHYNANKALMNLGYEGMFPSD---MTKVDPSI 286

Query: 328 ------DLKKEKNFFETRVTEYQ--QGAELKWD 352
                 +  +  +FF    + Y   +    + +
Sbjct: 287 LSALSPNADENHDFFSGSGSSYVIGKAVATEDE 319


>gi|227358546|ref|ZP_03842871.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis
           ATCC 29906]
 gi|227161257|gb|EEI46331.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis
           ATCC 29906]
          Length = 337

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/335 (18%), Positives = 121/335 (36%), Gaps = 31/335 (9%)

Query: 28  RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
           R +      ++     E +     N W+P ++P+ +D+  W +   LT  E+ +  R   
Sbjct: 23  RVNAINWNRIEDEKDLEVWNRLTMNFWLPEKIPLSNDIPSWNT---LTQAEKQLTIRVFT 79

Query: 88  FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--EL 145
                +++        +      P     L    F EAVH+ ++  I ++L L     + 
Sbjct: 80  GLTLLDTIQNTVGAPTLMPDAQTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDDA 139

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
           +    E   +  K++  L+Y Q                          V  E   FY+GF
Sbjct: 140 YRWSEENTYLQKKSDIILRYYQDSDPLKKKI---------------ASVFLESFLFYSGF 184

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
              +      K+   A+  + I+RDE++H  +         +    L  ++ +  + ++L
Sbjct: 185 YLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQNQLLNKSSLEKQDIKDFAFSLL 244

Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMS 324
            +    E+ Y  +      VG      ++++ + AN+    +G E LF     N  P + 
Sbjct: 245 LDLYDNEVKYTEDLY--DSVGWT-EDVKKFLHYNANKALMNLGYEALFPDEITNVSPAIL 301

Query: 325 EVI--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
             +  D  +  +FF    + Y  G  +      WD
Sbjct: 302 SSLSPDANENHDFFSGSGSSYVIGKTINTEDDDWD 336


>gi|68535550|ref|YP_250255.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           jeikeium K411]
 gi|68263149|emb|CAI36637.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           jeikeium K411]
          Length = 331

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 117/339 (34%), Gaps = 48/339 (14%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  W +   L D E+    R     
Sbjct: 22  NWNSIPDEKDLEVWD---RLTANFWLPEKVPLSNDVPSWST---LNDMEKQATMRVFTGL 75

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      + +    + P         +F E+VH+ ++  I  +L       + F 
Sbjct: 76  TMLDTIQGTVGAVKLIEDAATPHEEAVFTNISFMESVHAKSYSSIFMTLASTPEINDAFR 135

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L + +                       +  V+ E   FY+GF  
Sbjct: 136 WSEENEKLQNKAKIILDFYEGDD---------------PMKKKIASVLLESFLFYSGFYL 180

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDES+H  +      +          +E ++ +  +L E
Sbjct: 181 PMYWSSHAKLTNTADIIRLIIRDESVHGYYIGYKYQRALENETPERQEELKEHTFDLLLE 240

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---------- 317
               E  Y  +      +G      ++++++ AN+  + +G E LF   E          
Sbjct: 241 LYDNEAQYTEDLY--DELGWT-EDVKRFLRYNANKALNNLGYEGLFPADETRVSPAILSA 297

Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQG---AELKWD 352
            NP           +  +FF    + Y  G     +  D
Sbjct: 298 LNP--------GGDENHDFFSGSGSSYVIGKAENTVDDD 328


>gi|254702722|ref|ZP_05164550.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
           bv. 3 str. 686]
          Length = 335

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 113/327 (34%), Gaps = 28/327 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W++   L   E+ +  R        
Sbjct: 26  NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 82

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++      + +      P     L   +F EAVH+ ++  I ++L L     + +    
Sbjct: 83  DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 142

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  K+   L                              V  E   FY+GF   + 
Sbjct: 143 ENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYLPMY 187

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          +E +  +  +L E   
Sbjct: 188 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLELYD 247

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y         VGL     ++++ + AN+    +G E LF       NP    +   
Sbjct: 248 NEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSP 304

Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
           +  +  +FF    + Y   +    + +
Sbjct: 305 NADENHDFFSGSGSSYVIGKAVATEDE 331


>gi|227329868|ref|ZP_03833892.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 320

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 119/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   L   ER +  R        
Sbjct: 11  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWGT---LNARERQLTIRVFTGLTLL 67

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L L     + +    
Sbjct: 68  DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  K++  L + ++                         V  E   FY+GF   + 
Sbjct: 128 ENTALQKKSDIILSHYRSDDPLMKKV---------------ASVFLESFLFYSGFYLPMY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +   
Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKADPARQQQVKNFAYDLLQDLYD 232

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+ Y  E      VG      ++++ + AN+    +G E LF       NP    +   
Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289

Query: 328 DLKKEKNFFETRVTEYQQGAELK-----WD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319


>gi|293411957|ref|ZP_06654682.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|309797907|ref|ZP_07692288.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|220980068|emb|CAP72260.1| Ribonucleoside-diphosphate reductase subunit beta [Escherichia coli
           LF82]
 gi|291469512|gb|EFF12001.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
 gi|308118515|gb|EFO55777.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 145-7]
 gi|323934216|gb|EGB30640.1| ribonucleotide reductase [Escherichia coli E1520]
          Length = 380

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/339 (20%), Positives = 130/339 (38%), Gaps = 28/339 (8%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   + M   +S +V +    KY    +      +  W P EV +  D   + +   L D
Sbjct: 12  DATKEPMFLGQSVNVARYDQQKYRDFEKLIERQLSFFWRPEEVDISSDRIDFNT--KLRD 69

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            ER +   NL +    +S+   +    +   +S PE   ++   +F E +HS ++ +II 
Sbjct: 70  HERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPELETWVETWSFSETIHSRSYTHIIR 129

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV- 195
            +  D   +F+       I  +A         L   +    +   ++EF +     Y   
Sbjct: 130 GMVDDPSIVFDGIVTDEEIINRAISISAEYDRLYGMTCERQSL-GEKEFERLYVNEYGWE 188

Query: 196 -----------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                             E + FY  FA   + G    + G  +  ++I RDE+LH    
Sbjct: 189 PYPLHRQLFRTLVSINALEAIRFYVSFACTFAFGERKLLEGNTKIMRFIARDEALHCEGT 248

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEAT----LLEIAYAHETMPKG-FVGLNAPSCE 293
             +I  ++     L  KE       ++++        E+ +A      G  +GLNA   +
Sbjct: 249 ERMIRFMRTGREGLLWKEIAADEENVIYDTMKSVAEQEMNWADYLFKDGSMIGLNADILK 308

Query: 294 QYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
            Y+++  N   +++GL+ LF   T +P  WM++ +    
Sbjct: 309 TYVKYRTNLAMNRLGLKALFPEVTTDPLVWMNKWLLTDT 347


>gi|50122260|ref|YP_051427.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612786|emb|CAG76236.1| ribonucleoside-diphosphate reductase 2 beta chain [Pectobacterium
           atrosepticum SCRI1043]
          Length = 320

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 120/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   L   ER +  R        
Sbjct: 11  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWST---LNTRERQLTIRVFTGLTLL 67

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L L     + +    
Sbjct: 68  DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P++  K++  L + ++                         V  E   FY+GF   + 
Sbjct: 128 ENPALQKKSDIILSHYRSDDPLMKKV---------------ASVFLESFLFYSGFYLPMY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +   
Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALAKADPARQQQVKNFAYDLLQDLYD 232

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+ Y  E      VG      ++++ + AN+    +G E LF       NP    +   
Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319


>gi|239833484|ref|ZP_04681812.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum
           intermedium LMG 3301]
 gi|239821547|gb|EEQ93116.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum
           intermedium LMG 3301]
          Length = 328

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 114/327 (34%), Gaps = 28/327 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W++   L  +E+ +  R        
Sbjct: 19  NWNRIEDEKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKREEKQLTIRVFTGLTLL 75

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++      + +      P     L   +F EAVH+ ++  I ++L L     + +    
Sbjct: 76  DTIQNAVGAVKLMDDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 135

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  K+   L                              V  E   FY+GF   + 
Sbjct: 136 ENEFLQRKSVLILDQYHAGDPLKKKI---------------ASVFLESFLFYSGFYLPMY 180

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          +E +  +  +L E   
Sbjct: 181 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLERLNGEQKQEIKDFAFELLLELYD 240

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y         VGL     ++++ + AN+    +G E LF       NP    +   
Sbjct: 241 NEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPADACKVNPAILSALSP 297

Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
           +  +  +FF    + Y   +    + +
Sbjct: 298 NADENHDFFSGSGSSYVIGKAVATEDE 324


>gi|260448266|gb|ACX38688.1| Ribonucleoside-diphosphate reductase [Escherichia coli DH1]
 gi|315137289|dbj|BAJ44448.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           DH1]
          Length = 319

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKIFLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|260579705|ref|ZP_05847564.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium jeikeium ATCC 43734]
 gi|258602135|gb|EEW15453.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium jeikeium ATCC 43734]
          Length = 331

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 117/339 (34%), Gaps = 48/339 (14%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  W +   L D E+    R     
Sbjct: 22  NWNSIPDEKDLEVWD---RLTANFWLPEKVPLSNDVPSWST---LNDMEKQATMRVFTGL 75

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      + +    + P         +F E+VH+ ++  I  +L       + F 
Sbjct: 76  TMLDTIQGTVGAVKLIEDAATPHEEAVFTNISFMESVHAKSYSSIFMTLASTPEINDAFR 135

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L + +                       +  V+ E   FY+GF  
Sbjct: 136 WSEENEKLQNKAKIILDFYEGDD---------------PMKKKIASVLLESFLFYSGFYL 180

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDES+H  +      +          +E ++ +  +L E
Sbjct: 181 PMYWSSHAKLTNTADIIRLIIRDESVHGYYIGYKYQRALENETPERQEELKEHTFDLLLE 240

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---------- 317
               E  Y  +      +G      ++++++ AN+  + +G E LF   E          
Sbjct: 241 LYDNEAQYTEDLY--DELGWT-EDVKRFLRYNANKALNNLGYEGLFPADETRVSPAILSA 297

Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQG---AELKWD 352
            NP           +  +FF    + Y  G     +  D
Sbjct: 298 LNP--------GGDENHDFFSGSGSSYVIGKAENTVDDD 328


>gi|306812443|ref|ZP_07446641.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           NC101]
 gi|222034376|emb|CAP77117.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli LF82]
 gi|305854481|gb|EFM54919.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           NC101]
 gi|312947211|gb|ADR28038.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           O83:H1 str. NRG 857C]
          Length = 319

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      +   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|331684294|ref|ZP_08384886.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H299]
 gi|331077909|gb|EGI49115.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli H299]
          Length = 319

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 118/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+    I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIHLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|312965591|ref|ZP_07779821.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 2362-75]
 gi|312289740|gb|EFR17630.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli 2362-75]
          Length = 319

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF +  + Y  G  ++
Sbjct: 286 LSPNADENHDFFSSSGSSYVMGKAVE 311


>gi|300780546|ref|ZP_07090401.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           genitalium ATCC 33030]
 gi|300533532|gb|EFK54592.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           genitalium ATCC 33030]
          Length = 333

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 121/330 (36%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P ++P+ +D+  W +   L D E+L   R     
Sbjct: 24  NWNSIPDDKDQEVWD---RLTGNFWLPEKIPVSNDIPSWNT---LNDAEQLSTMRVFANL 77

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ--YIITSLGLDEGELFN 147
              +++      +++                AF E+VH+ ++   Y+  +      + F 
Sbjct: 78  TLLDTIQGTVGAVSLIPDAKTLHEEAVYTNIAFMESVHAKSYSNIYMTLASTPQINDAFR 137

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA     Y                         +  V+ E   FY+GF  
Sbjct: 138 WTEENAEVQRKAKIIQSYYCGDD---------------PLKRKIASVMLESFLFYSGFYL 182

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L+    +K+   A+  + I+RDE++H  +          +       E ++ +  +L++
Sbjct: 183 PLNWSVHSKLTNTADIIRLIIRDEAVHGYYIGYKYQVGLRDESQQRQDELKEHAFDLLYD 242

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 243 LYDNEIQYTEDLY--DPLGWT-EDVKRFLRYNANKALNNLGYEGLFPVDETRVSPAILAS 299

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +  + + D
Sbjct: 300 LAPNADENHDFFSGSGSSYVIGKAEDTQDD 329


>gi|295097265|emb|CBK86355.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 319

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 121/331 (36%), Gaps = 33/331 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+      P     +   +F EAVH+ ++  + ++L         +    
Sbjct: 67  DTIQNTVGAPALMSDALTPHEEAVMSNISFMEAVHARSYSSVFSTLCQTRDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  S+  KA+  L+Y +                          V  E   FY+GF   + 
Sbjct: 127 ESASLQRKADLVLEYYRADEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      +E +  +  +L +   
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKVSAEKREELKGFALDLLMDLYD 231

Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
            E++Y  E     G+        + ++ + AN+    +G E LF       NP    +  
Sbjct: 232 NELSYTEELYAGTGWE----EDVKAFLCYNANKALMNLGYEALFPPEMAEVNPAILAALS 287

Query: 327 IDLKKEKNFFETRVTEYQQGAELK-----WD 352
            +  +  +FF    + Y  G  ++     WD
Sbjct: 288 PNADENHDFFSGSGSSYVMGKAVETQDEDWD 318


>gi|20809684|gb|AAH28932.1| Similar to ribonucleotide reductase protein r2 class I [Homo
           sapiens]
          Length = 172

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 9/163 (5%)

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
           +  V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   +  
Sbjct: 6   ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV- 64

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                  K  +++ R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++
Sbjct: 65  ------HKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 118

Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           G   +F+  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 119 GFSKVFRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 159


>gi|157311531|ref|YP_001469574.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           Phi1]
 gi|149380735|gb|ABR24740.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           Phi1]
          Length = 386

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/353 (17%), Positives = 124/353 (35%), Gaps = 40/353 (11%)

Query: 17  VNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           V++ ++ M            +   ++    E      +  W P E+ +  D   +     
Sbjct: 9   VDIMNEPMFLGSGLGIARYDIQ--RHQVFEELIEKQLSFFWRPEEISLATDRIQY---LN 63

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           + D E+     NL +    +S+       A    +S+P    +L    F E +HS ++ +
Sbjct: 64  MGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTLDTWLQTWTFSETIHSRSYTH 123

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ +  +D    F+   + P+I  +A    QY   +            D  + ++     
Sbjct: 124 IMRNCFIDPASEFDQIIDNPAIMKRAESIGQYYDDVLYWIRKYENAKEDLRYWEERDDHT 183

Query: 194 VV---------------------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
            +                            E + FY  FA   S      + G A+  ++
Sbjct: 184 ALDDARRFFEDTKRDLMASIYLCAHCVNALEAIRFYVSFACTFSFAERGLLEGNAKIMKF 243

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPK 282
           I RDE LHL     +I Q +            +E + ++  +  +    E  +       
Sbjct: 244 IARDEQLHLKGTQYIIRQWQTGADGDEWKQIAEELEGEATKIFLDVVEQEKEWVDHLFAM 303

Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
           G    L+    + Y++++A+ R    GL+  F    +P PWM + ++  + +N
Sbjct: 304 GAIPNLSPEILKTYVEYLADSRMRAAGLKSPFSVRRHPLPWMRKWLNSDEVQN 356


>gi|110642801|ref|YP_670531.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           536]
 gi|191171432|ref|ZP_03032981.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli F11]
 gi|300990601|ref|ZP_07179251.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 200-1]
 gi|110344393|gb|ABG70630.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           536]
 gi|190908366|gb|EDV67956.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli F11]
 gi|300305718|gb|EFJ60238.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 200-1]
 gi|324014406|gb|EGB83625.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 60-1]
          Length = 319

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------TSVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQEQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      +   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|170684037|ref|YP_001744827.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           SMS-3-5]
 gi|170521755|gb|ACB19933.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli SMS-3-5]
          Length = 319

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKKLEKISLAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      +   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|310641424|ref|YP_003946182.1| ribonucleoside-diphosphate reductase beta chain [Paenibacillus
           polymyxa SC2]
 gi|309246374|gb|ADO55941.1| Ribonucleoside-diphosphate reductase beta chain [Paenibacillus
           polymyxa SC2]
          Length = 321

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 120/309 (38%), Gaps = 21/309 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+P+ DD   W +   L+D E+    + LG     +++     +  I
Sbjct: 20  FWNQNIMQFWTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQI 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWA 162
             H+   + +  L   A  E +H+ ++  I T+L   E    +F    E P +  KA   
Sbjct: 77  MEHVDGLQRKAVLSFMAMMEQIHAKSYSSIFTTLASTEEIDGVFRWVEENPHLQTKAETI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            QY   + +P                     V+ E   FY+GF   L L    K+    E
Sbjct: 137 RQYYMNIHTPKDL-----------YLAMAASVLLESYLFYSGFFYPLYLAGQGKLTCSGE 185

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  +   +  +I  E      ++  Q    +L      E  Y  +    
Sbjct: 186 IIDLILRDESIHGVYVGVLAQEIYAELDEEEQRDLYQTLVGLLRYLHNNEEQYTEQIY-- 243

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL     + ++++ AN+    +G +PLF+  E NP  + + +    K+ +FF  +  
Sbjct: 244 APIGL-VDDVKVFLRYNANKAMMNLGFDPLFEEEEVNPIVF-NGISTHTKQHDFFSKKGN 301

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 302 GYVRAMNVE 310


>gi|5230837|gb|AAD41037.1|AF112536_1 ribonucleotide reductase beta-chain [Corynebacterium glutamicum]
          Length = 334

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 126/332 (37%), Gaps = 35/332 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  W +   L + E+    R     
Sbjct: 25  NWNSIPDSKDLEVWD---RLTGNFWLPEKVPVSNDIKSWGT---LNEVEKAATMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++     +      L   AF E+VH+ ++  I  +L       + F 
Sbjct: 79  TLLDTIQGTVGAISLLPDADSLHEEAVLTNIAFMESVHAKSYSNIFMTLASTAEINDAFR 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                       +  V+ E   FY+GF  
Sbjct: 139 WSEENENLQRKAKIILSYYEGDD---------------PLKRKIASVILESFLFYSGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +     +K+   A+  + I+RDE++H  +      +   +      +E ++ +  +L++
Sbjct: 184 PMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTFDLLYD 243

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-----NPFPW 322
               E  Y+ +      +G      ++++++IAN+  + +G E LF   E     N    
Sbjct: 244 LYDNETQYSEDLYDD--LGWT-EDVKRFLRYIANKALNNLGYEGLFPADETKVSPNILSA 300

Query: 323 MSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
           +S   +  +  +FF    + Y   +    + D
Sbjct: 301 LSP--NADENHDFFSGSGSSYVIGKAENTEDD 330


>gi|68161126|gb|AAY86994.1| ribonucleotide reductase M2b [Ictalurus punctatus]
          Length = 192

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 25/214 (11%)

Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
             +I +   D  E   LFN    +P +  KA+WALQ+              D +  F + 
Sbjct: 1   SLLINTYIRDLKERDYLFNAIETLPYVKRKADWALQWI------------SDTNSTFAER 48

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  F  V EG++F   FA I  L +   M G+    + I RDE LH NF   + +Q++  
Sbjct: 49  LVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTYSNELISRDEGLHCNFACLIYSQLQK- 106

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
                 K    + + ++ +A  +E  +  E +P   +G+N+   +QY++F+A+R    +G
Sbjct: 107 ------KPSADRVKDIITKAVRIEQEFLTEALPVDLIGINSYLMKQYIEFVADRLLTDLG 160

Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
           +  +++  ENPF +M E I L+ + NFFE RV E
Sbjct: 161 IPKVYE-AENPFDFM-EFISLEGKTNFFEKRVAE 192


>gi|86359305|ref|YP_471197.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli
           CFN 42]
 gi|86283407|gb|ABC92470.1| ribonucleoside-diphosphate reductase, beta subunit protein
           [Rhizobium etli CFN 42]
          Length = 324

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 118/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +      P     L   +F EAVH+ ++  I ++L       + + 
Sbjct: 69  TLLDTIQNGVGAVGLMEDAVTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   ++   +  +                      V  E   FY+GF  
Sbjct: 129 WSEENEFLQRKSALIMEQYASGDALKKKV---------------ASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLETLSEERRQEIKYFAFDLLLE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VGL+    ++++ + AN+    +G E LF       NP    +
Sbjct: 234 LYDNEAKYTEALYDG--VGLS-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|307625752|gb|ADN70056.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           UM146]
          Length = 319

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      + + +      +E +  +  +L E
Sbjct: 169 PMYFASRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNQEKISQAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      +   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKVLMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|268590425|ref|ZP_06124646.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rettgeri DSM 1131]
 gi|291314339|gb|EFE54792.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
           rettgeri DSM 1131]
          Length = 323

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 121/333 (36%), Gaps = 40/333 (12%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   LT  E+ +  R        
Sbjct: 14  NWNRIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWNT---LTAAEKQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L    D  + +    
Sbjct: 71  DTIQNTVGAPCLMPDAQTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTVDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA   L Y                         +  +  E   FY+GF   + 
Sbjct: 131 ENNALQNKAKIILSYY---------------CDSHPLKKKIASIFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      KE +  S ++L +   
Sbjct: 176 WSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLAQYDENTQKEIKDFSFSLLFDLYE 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI--- 327
            E+ Y  E      VG +    ++++ + AN+    +G E LF  T      +++V    
Sbjct: 236 NEVKYTQELY--DTVGWS-EDVKKFLHYNANKALMNLGYEALFPDT------VTDVSAAI 286

Query: 328 ------DLKKEKNFFETRVTEYQ--QGAELKWD 352
                 D  +  +FF    + Y   +    + D
Sbjct: 287 LSALSPDANENHDFFSGSGSSYIIGKAVSTEDD 319


>gi|153010278|ref|YP_001371492.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562166|gb|ABS15663.1| Ribonucleoside-diphosphate reductase [Ochrobactrum anthropi ATCC
           49188]
          Length = 328

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 115/327 (35%), Gaps = 28/327 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W++   L   E+ +  R        
Sbjct: 19  NWNRIEDEKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 75

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++      + +    + P     L   +F EAVH+ ++  I ++L L     + +    
Sbjct: 76  DTIQNAVGAVKLMDDAATPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 135

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  K+   L   +                       +  V  E   FY+GF   + 
Sbjct: 136 ENEFLQRKSVLILDQYRADD---------------PLKRKIASVFLESFLFYSGFYLPMY 180

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          +  +  +  +L E   
Sbjct: 181 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLERLNEEQKQAIKDFAFELLLELYD 240

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y         VGL     ++++ + AN+    +G E LF       NP    +   
Sbjct: 241 NEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSP 297

Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
           +  +  +FF    + Y   +    + +
Sbjct: 298 NADENHDFFSGSGSSYVIGKAVATEDE 324


>gi|238896131|ref|YP_002920867.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548449|dbj|BAH64800.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 333

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 119/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 24  NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 77

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L   +     F 
Sbjct: 78  TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 137

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA   L Y Q                          V  E   FY+GF  
Sbjct: 138 WSESCDPLQRKAQLMLGYYQADEPLKKKI---------------ASVFLESFLFYSGFWL 182

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L +
Sbjct: 183 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 242

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+AY+ E    G  G        ++ + AN+    +G E LF       NP    +
Sbjct: 243 LYDNELAYSRELY--GESGW-FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 299

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G     A+  WD
Sbjct: 300 LSPNADENHDFFSGSGSSYVIGKMEETADDDWD 332


>gi|152971534|ref|YP_001336643.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956383|gb|ABR78413.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 320

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 119/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 11  NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L   +     F 
Sbjct: 65  TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA   L Y Q                          V  E   FY+GF  
Sbjct: 125 WSESCDPLQRKAQLMLDYYQADEPLKKKI---------------ASVFLESFLFYSGFWL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L +
Sbjct: 170 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+AY+ E    G  G        ++ + AN+    +G E LF       NP    +
Sbjct: 230 LYDNELAYSRELY--GESGW-FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G     A+  WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKMEETADDDWD 319


>gi|228473186|ref|ZP_04057941.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275336|gb|EEK14128.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 319

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/320 (21%), Positives = 116/320 (36%), Gaps = 23/320 (7%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y    +         W+ +EV    D+  +KS   L+  E+  +KR L   A
Sbjct: 7   RENYKPFEYPEVMKFVDMMHQTFWVHSEVEFTADIQDFKS--NLSLVEKEAVKRALLGIA 64

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E          +Y     PE        A  E  HS  +  ++  LG +    F    
Sbjct: 65  QVEV-AVKTFWGDLYDVFPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNNE--FEALL 121

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           EVP    +     +Y                 +  ++ +  F ++ E    ++ FA ILS
Sbjct: 122 EVPIFKERNTILKEYL------------AKNRENAMERILFFTLIIENASLFSQFATILS 169

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
             R    M  +A    +   DE +H N GI ++  I  ENP   TK  ++++   + E  
Sbjct: 170 FTRFKGYMKNVANIIAWTSVDEQVHANAGIYILKTIFDENPEFRTKA-KKEATEFIREYI 228

Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
           LLE         +G +   +      YM++  +    Q+ L   F  T     P  W  E
Sbjct: 229 LLEDKMLDWIFEEGELEFFSKKDLANYMRYRLDDALTQLDLGKPFGITAEEAKPMLWFEE 288

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            + + +  +FF  R T Y +
Sbjct: 289 EVFVNELDDFFAKRPTAYTK 308


>gi|311741200|ref|ZP_07715024.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303370|gb|EFQ79449.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 329

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 121/330 (36%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +DL  WK+   LT+ E+    R     
Sbjct: 20  NWNSIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++                AF E+VH+ ++  I  +L       + F 
Sbjct: 74  TLLDTIQGTVGAISLLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                           + E   FY+GF  
Sbjct: 134 WSEENENLQKKAKIILSYYKGDDPLKKKV---------------ASTLLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +       E ++ +  ++++
Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQAYKQLDEEHQAELKEYTFDLVYD 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 239 LYDNEIDYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +  +   D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDD 325


>gi|311278369|ref|YP_003940600.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
 gi|308747564|gb|ADO47316.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
          Length = 320

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 118/330 (35%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P ++P+ +D+  W+S   L+  E+ +  R        
Sbjct: 11  NWNRIEDEKDLEVWNRLTSNFWLPEKIPLSNDIPAWQS---LSHAEQQLTIRVFTGLTLL 67

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       ++      P     L    F EAVH+ ++  I ++L   +     +    
Sbjct: 68  DTVQNTVGAPSLMPDALTPHEEAVLSNIGFMEAVHARSYSSIFSTLCQSKDVDAAYAWSE 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA   L +                  +      +  V  E   FY+GF   + 
Sbjct: 128 ENAPLQQKARTVLGHYAA---------------DCPLKRKIASVFLESFLFYSGFWLPMY 172

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   + P    +  + ++  +L     
Sbjct: 173 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKIPPARREALRNEAVDLLMNLYE 232

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            E+AY      +   G      ++++ + AN+    +G E LF       NP    +   
Sbjct: 233 NELAYTEALYAQ--TGWT-EEVKRFLCYNANKALMNLGYEALFPAEMADVNPAILAALSP 289

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 290 NADENHDFFSGSGSSYVMGKTVGTHDEDWD 319


>gi|225628773|ref|ZP_03786807.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           str. Cudo]
 gi|237817303|ref|ZP_04596295.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           str. 2308 A]
 gi|225616619|gb|EEH13667.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
           str. Cudo]
 gi|237788116|gb|EEP62332.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
           str. 2308 A]
          Length = 335

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 113/327 (34%), Gaps = 28/327 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W++   L   E+ +  R        
Sbjct: 26  NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 82

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++      + +      P     L   +F EAVH+ ++  I ++L L     + +    
Sbjct: 83  DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 142

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  K+   L                              V  E   FY+GF   + 
Sbjct: 143 ENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYLPMY 187

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          +E +  +  +L E   
Sbjct: 188 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLELYD 247

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y         VGL     ++++ + AN+    +G E LF       NP    +   
Sbjct: 248 NEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSP 304

Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
           +  +  +FF    + Y   +    + +
Sbjct: 305 NADENHDFFSGSGSSYVIGKAVATEDE 331


>gi|296104353|ref|YP_003614499.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058812|gb|ADF63550.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 319

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/331 (18%), Positives = 123/331 (37%), Gaps = 33/331 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNHIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+      P     +   +F EAVH+ ++  I ++L   +     ++   
Sbjct: 67  DTIQNTVGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDAAYSWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  S+  KAN  L Y Q                          V  E   FY+GF   + 
Sbjct: 127 ESESLQRKANLVLDYYQADEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +   +  +E +  +  +L +   
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKVSDVRREELKGFALDLLMDLYD 231

Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
            E++Y  E     G+        + ++ + AN+    +G E LF       NP    +  
Sbjct: 232 NELSYTEELYAGTGWE----EEVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287

Query: 327 IDLKKEKNFFETRVTEYQQGAELK-----WD 352
            +  +  +FF    + Y  G  ++     WD
Sbjct: 288 PNADENHDFFSGSGSSYVMGKAVETEDEDWD 318


>gi|22125124|ref|NP_668547.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           KIM 10]
 gi|45442235|ref|NP_993774.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51597273|ref|YP_071464.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808370|ref|YP_652286.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Antiqua]
 gi|108811297|ref|YP_647064.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Nepal516]
 gi|145598906|ref|YP_001162982.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Pestoides F]
 gi|149365457|ref|ZP_01887492.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           CA88-4125]
 gi|162420024|ref|YP_001607865.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           Angola]
 gi|165925252|ref|ZP_02221084.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165939901|ref|ZP_02228439.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166008124|ref|ZP_02229022.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212554|ref|ZP_02238589.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167398943|ref|ZP_02304467.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167421281|ref|ZP_02313034.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423716|ref|ZP_02315469.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167468720|ref|ZP_02333424.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           FV-1]
 gi|170023362|ref|YP_001719867.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis YPIII]
 gi|186896377|ref|YP_001873489.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
           pseudotuberculosis PB1/+]
 gi|218929725|ref|YP_002347600.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           CO92]
 gi|229838202|ref|ZP_04458361.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895452|ref|ZP_04510624.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis Pestoides A]
 gi|229898686|ref|ZP_04513831.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901543|ref|ZP_04516665.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           Nepal516]
 gi|270489729|ref|ZP_06206803.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           KIM D27]
 gi|294504447|ref|YP_003568509.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           Z176003]
 gi|21957983|gb|AAM84798.1|AE013726_1 ribonucleoside-diphosphate reductase 2, beta chain, frag [Yersinia
           pestis KIM 10]
 gi|45437099|gb|AAS62651.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51590555|emb|CAH22196.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774945|gb|ABG17464.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Yersinia pestis Nepal516]
 gi|108780283|gb|ABG14341.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Yersinia pestis Antiqua]
 gi|115348336|emb|CAL21269.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           CO92]
 gi|145210602|gb|ABP40009.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Yersinia pestis Pestoides F]
 gi|149291870|gb|EDM41944.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           CA88-4125]
 gi|162352839|gb|ABX86787.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           Angola]
 gi|165912120|gb|EDR30759.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922859|gb|EDR40010.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165992506|gb|EDR44807.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206485|gb|EDR50965.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166960770|gb|EDR56791.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051447|gb|EDR62855.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057886|gb|EDR67632.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169749896|gb|ACA67414.1| Ribonucleoside-diphosphate reductase [Yersinia pseudotuberculosis
           YPIII]
 gi|186699403|gb|ACC90032.1| ribonucleotide reductase [Yersinia pseudotuberculosis PB1/+]
 gi|229681472|gb|EEO77566.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
           Nepal516]
 gi|229688234|gb|EEO80305.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229694568|gb|EEO84615.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701607|gb|EEO89634.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Yersinia pestis Pestoides A]
 gi|262362562|gb|ACY59283.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           D106004]
 gi|262366433|gb|ACY62990.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           D182038]
 gi|270338233|gb|EFA49010.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
           KIM D27]
 gi|294354906|gb|ADE65247.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
           Z176003]
 gi|320016142|gb|ADV99713.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 323

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 120/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   LT  E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LTPHEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L L     + +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  KA+   Q+                            V  E   FY+GF   + 
Sbjct: 131 DNGPLQKKADIISQHYHNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      +E +  +  +L +   
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLGKIDSAHRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +      VG      ++++ + AN+    +G E LF  ++   +P    +   
Sbjct: 236 NEVRYTEDLYDH--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322


>gi|269866693|ref|XP_002652360.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220062665|gb|EED41696.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 211

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 28/220 (12%)

Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
            +  +I +L  D+ E   LFN    +PSI  KA WA ++  + +S               
Sbjct: 1   MYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFD------------- 47

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
               V +   EG++F   FA I  L +   M G+    + I RDE LH +F   +   I 
Sbjct: 48  -TRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYIN 106

Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
            +               ++ EA  +E  +  E++P   +G+N     QY++F+A+R    
Sbjct: 107 NK---------CTVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFA 157

Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           +G + ++  + NPF +M E I L+ + NFFE R   YQ+G
Sbjct: 158 LGEKKIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 195


>gi|296118681|ref|ZP_06837257.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295968170|gb|EFG81419.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 329

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 121/330 (36%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P ++P+ +D+  WK    +T  E+    R     
Sbjct: 20  NWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSWK---KMTPQEQQATMRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++                +F E+VH+ ++  I  +L       E F 
Sbjct: 74  TLLDTIQGTVGAISLVPDAETMHEEAVYTNISFMESVHAKSYSNIFMTLATTPQINEAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y +                           + E   FY+GF  
Sbjct: 134 WSEENENLQRKAKIIMSYYRGDDPLKKKV---------------ASTLLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            + L    K+   A+  + I+RDES+H  +      Q   +      +E++  +  ++++
Sbjct: 179 PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEEKQQEYKDYTFDLMYD 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E+ Y  +      +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 239 LYENELEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSS 295

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +  E   D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEETVDD 325


>gi|269865524|ref|XP_002651954.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063427|gb|EED42101.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 205

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 25/206 (12%)

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
            +  LFN    +PSI  KA WA ++  + +S                   V +   EG++
Sbjct: 9   RQTYLFNAIENIPSIRKKALWAQKWIASDTSFD--------------TRCVAFACVEGIF 54

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           F   FA I  L +   M G+    + I RDE LH +F   +   I  +            
Sbjct: 55  FSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNK---------CTV 105

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G + ++  + NPF
Sbjct: 106 IEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPF 164

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
            +M E I L+ + NFFE R   YQ+G
Sbjct: 165 DFM-ENISLQGKTNFFERREANYQKG 189


>gi|18158911|pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
           Containing, Form
 gi|18158912|pdb|1KGN|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
           Containing, Form
 gi|18158913|pdb|1KGN|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
           Containing, Form
 gi|18158914|pdb|1KGN|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
           Containing, Form
 gi|18158915|pdb|1KGO|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
           Containing, Form
 gi|18158916|pdb|1KGO|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
           Containing, Form
 gi|18158917|pdb|1KGO|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
           Containing, Form
 gi|18158918|pdb|1KGO|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
           Containing, Form
 gi|18158919|pdb|1KGP|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Mn
           Substituted Form
 gi|18158920|pdb|1KGP|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Mn
           Substituted Form
 gi|18158921|pdb|1KGP|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Mn
           Substituted Form
 gi|18158922|pdb|1KGP|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Mn
           Substituted Form
 gi|48425146|pdb|1OQU|A Chain A, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
           Soaking Of Crystals Of The Ribonucleotide Reductase R2f
           Protein From Corynebacterium Ammoniagenes
 gi|48425147|pdb|1OQU|B Chain B, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
           Soaking Of Crystals Of The Ribonucleotide Reductase R2f
           Protein From Corynebacterium Ammoniagenes
 gi|48425148|pdb|1OQU|C Chain C, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
           Soaking Of Crystals Of The Ribonucleotide Reductase R2f
           Protein From Corynebacterium Ammoniagenes
 gi|48425149|pdb|1OQU|D Chain D, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
           Soaking Of Crystals Of The Ribonucleotide Reductase R2f
           Protein From Corynebacterium Ammoniagenes
 gi|193506844|pdb|3DHZ|A Chain A, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
 gi|193506845|pdb|3DHZ|B Chain B, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
 gi|3077614|emb|CAA70766.1| ribonucleotide reductase subunit R2F [Corynebacterium ammoniagenes]
          Length = 329

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 121/330 (36%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P ++P+ +D+  W   N +T  E+L   R     
Sbjct: 20  NWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++                AF E+VH+ ++  I  +L       E F 
Sbjct: 74  TLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y                             + E   FY+GF  
Sbjct: 134 WSEENENLQRKAKIIMSYYNGDDPLKKKV---------------ASTLLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            + L    K+   A+  + I+RDES+H  +      Q   +      +E++  +  ++++
Sbjct: 179 PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYD 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 239 LYENEIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSS 295

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +  +   D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDD 325


>gi|323978713|gb|EGB73795.1| ribonucleotide reductase [Escherichia coli TW10509]
          Length = 319

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +  +                       V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDNPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISMAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|238790129|ref|ZP_04633906.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           frederiksenii ATCC 33641]
 gi|238721798|gb|EEQ13461.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
           frederiksenii ATCC 33641]
          Length = 323

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 118/323 (36%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W +   L  +E+ +  R        
Sbjct: 14  NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LAPNEQQLTIRVFTGLTLL 70

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+ +    P         +F EAVH+ ++  I ++L +     + +    
Sbjct: 71  DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA+  LQ+                            V  E   FY+GF   + 
Sbjct: 131 ENGPLQKKADIILQHYHNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +      +   +E +  +  +L +   
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLERVDNNRRQEIKNFAFDLLQDLYD 235

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y  +      VG      ++++ + AN+    +G E LF  ++   +P    +   
Sbjct: 236 NEVRYTEDLYDD--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  + 
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVS 315


>gi|323188442|gb|EFZ73728.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli RN587/1]
          Length = 319

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDEPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      +   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|25028975|ref|NP_739029.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           efficiens YS-314]
 gi|259508040|ref|ZP_05750940.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium efficiens YS-314]
 gi|23494262|dbj|BAC19229.1| ribonucleotide reductase beta chain [Corynebacterium efficiens
           YS-314]
 gi|259164381|gb|EEW48935.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium efficiens YS-314]
          Length = 334

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 123/336 (36%), Gaps = 40/336 (11%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P ++P+ +D+  W +   LTD E+    R     
Sbjct: 25  NWNSIPDDKDLEVWD---RLTGNFWLPEKIPVSNDIKSWGT---LTDKEKQATMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++     +      L   AF E+VH+ ++  I  +L       + F 
Sbjct: 79  TLLDTIQGTVGAVSLLPDAESLHEEAVLTNIAFMESVHAKSYSNIFMTLASTPQINDAFR 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                       +  V+ E   FY+GF  
Sbjct: 139 WSEENEALQRKAKIILAYYEGED---------------PLKRKIASVILESFLFYSGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E ++ +  +L++
Sbjct: 184 PMYWSSHAKLTNTADVIRLIIRDEAVHGYYVGYKYQKALARESAQRQEELKEYAFDLLYD 243

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               E  Y  +      +G      ++++++ AN+  + +G E LF   E     +S  I
Sbjct: 244 LYENETQYTEDLY--DELGWT-EDVKRFLRYNANKAMNNLGYEGLFPADETK---VSPAI 297

Query: 328 ------DLKKEKNFFETRVTEYQQGAE-----LKWD 352
                 +  +  +FF    + Y  G         WD
Sbjct: 298 LSALSPNADENHDFFSGSGSSYVIGKAEHTEDEDWD 333


>gi|253990649|ref|YP_003042005.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782099|emb|CAQ85263.1| ribonucleoside-diphosphate reductase 2 beta chain [Photorhabdus
           asymbiotica]
          Length = 319

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/345 (19%), Positives = 124/345 (35%), Gaps = 52/345 (15%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N+L   K    W        N W+P +VP+ +D+  W +   LT +E+ +  R  
Sbjct: 7   CAINWNRLKDDKDLEVWN---RLTTNFWLPEKVPLSNDIPSWNT---LTAEEKKLTIRVF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
                 +++       A+      P     +   +F EAVH+ ++  I ++L L     +
Sbjct: 61  TGLTLLDTIQNTVGAPALMEDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCLTADVDD 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            +       ++  KA   L Y                         V  V  E   FY+G
Sbjct: 121 AYYWSENNLALQNKAKIILNYY---------------CDSHPLKKKVASVFLESFLFYSG 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +      K+   A+  + I+RDE++H  +      Q   + P+   KE +  + ++
Sbjct: 166 FYLPMYWSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQQSLNKYPNSEKKEIKDFTFSL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           L +    EI Y  +      VG      ++++ + AN+    +G E LF         +S
Sbjct: 226 LFDLYENEIKYTEDLY--DIVGWT-EDVKKFLHYNANKALMNLGYEALF---------LS 273

Query: 325 EVID------------LKKEKNFFETRVTEYQQGAEL-----KWD 352
           E+ D              +  +FF    + Y  G  +      WD
Sbjct: 274 EMTDVSPAILSALSPGANENHDFFSGSGSSYVIGKAVNTEDEDWD 318


>gi|67008229|emb|CAH18519.1| ribonucleoside-dihosphate reductase beta chain [Rhodobacteraceae
           bacterium 198]
          Length = 325

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 127/346 (36%), Gaps = 35/346 (10%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           ++   R +    + N+L   K    W        N W+P +VP+ +D+  W   + LT D
Sbjct: 3   DMTQARAVPKAINWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSW---SQLTPD 56

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ +  R        +++        + +    P     L   AF EAVH+ ++  + ++
Sbjct: 57  EQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITPHEESVLSNIAFMEAVHARSYSSVFST 116

Query: 138 LGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L       E F    E   + AK+   L    + +SP                  V  V 
Sbjct: 117 LCQTTEVDEAFRWSAENEHLQAKSRLILDEYNSTASP--------------LRKKVASVF 162

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      ++   A+  + I+RDE++H  +      +          K
Sbjct: 163 LESFLFYSGFYLPMHWSSRARLTNTADLIRLIIRDEAIHGYYIGYKFQRGLERVSEAERK 222

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +  +  +L +   +E  Y  +      +GL     + ++ + AN+    +G E LF  
Sbjct: 223 EIKDFAFALLFDLYDIEARYTEQLYDG--LGLT-EDVKNFLHYNANKALQNLGFEALFPD 279

Query: 316 TE---NPFPWMSEVI-DLKKEKNFFETRVTEYQ--QGAELK---WD 352
                NP   M+ +     +  +FF    + Y   +    +   WD
Sbjct: 280 ESCRVNP-AIMAALSPGSDENHDFFSGSGSSYVIGKAEATEDEDWD 324


>gi|294853320|ref|ZP_06793992.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026]
 gi|294818975|gb|EFG35975.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026]
          Length = 329

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 113/327 (34%), Gaps = 28/327 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W++   L   E+ +  R        
Sbjct: 20  NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 76

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++      + +      P     L   +F EAVH+ ++  I ++L L     + +    
Sbjct: 77  DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  K+   L                              V  E   FY+GF   + 
Sbjct: 137 ENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYLPMY 181

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          +E +  +  +L E   
Sbjct: 182 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLFEEKRQEIKDFAFELLLELYD 241

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E+ Y         VGL     ++++ + AN+    +G E LF       NP    +   
Sbjct: 242 NEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSP 298

Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
           +  +  +FF    + Y   +    + +
Sbjct: 299 NADENHDFFSGSGSSYVIGKAVATEDE 325


>gi|146312797|ref|YP_001177871.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter sp.
           638]
 gi|145319673|gb|ABP61820.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Enterobacter sp. 638]
          Length = 319

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 119/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++  +    A+      P     +   +F EAVH+ ++  I ++L   +     ++   
Sbjct: 67  DTIQNSVGAPALMGDSLTPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDAAYSWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
              S+  KA   L+Y                            V  E   FY+GF   + 
Sbjct: 127 ASTSLQRKAQLVLEYYHADDPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      +E +  +  +L +   
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKISEAKREELKGFALDLLMDLYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            E++Y  E              + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NELSYTEELYAGTSW---ETDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK-----WD 352
           +  +  +FF    + Y  G  ++     WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVETEDADWD 318


>gi|24113980|ref|NP_708490.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 2a str. 301]
 gi|30064043|ref|NP_838214.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 2a str. 2457T]
 gi|110806691|ref|YP_690211.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri 5 str. 8401]
 gi|24053093|gb|AAN44197.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
           flexneri 2a str. 301]
 gi|30042299|gb|AAP18024.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
           flexneri 2a str. 2457T]
 gi|110616239|gb|ABF04906.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
           flexneri 5 str. 8401]
 gi|281602052|gb|ADA75036.1| Ribonucleoside-diphosphate reductase 2, beta chain [Shigella
           flexneri 2002017]
 gi|313648326|gb|EFS12770.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri 2a str. 2457T]
 gi|332753393|gb|EGJ83773.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri 4343-70]
 gi|332753901|gb|EGJ84276.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri K-671]
 gi|332755661|gb|EGJ86024.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri 2747-71]
 gi|332765626|gb|EGJ95839.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Shigella
           flexneri 2930-71]
 gi|332999413|gb|EGK18998.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri VA-6]
 gi|333000691|gb|EGK20268.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri K-218]
 gi|333015924|gb|EGK35260.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri K-304]
          Length = 319

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 118/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ +  N+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNTNKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|332878859|ref|ZP_08446574.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683210|gb|EGJ56092.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 319

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 116/317 (36%), Gaps = 23/317 (7%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
             P +Y    E   +   + W+ +EV    D+  +KS   L+  E+  IKR L   A  E
Sbjct: 10  YKPFEYPEVMEFVNAMHKSFWVHSEVEFTADVQDFKS--NLSAVEQEAIKRALLGIAQVE 67

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
             V       +Y     PE        A  E  HS  +  ++  LG +    F    EVP
Sbjct: 68  VSV-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLLEVP 124

Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
               +     +Y                 +  ++ +  F ++ E    ++ FA +LS  R
Sbjct: 125 VFKERNTVLKEYL------------AKNRENAMERILFFTLIIENASLFSQFATVLSFAR 172

Query: 214 -ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
               +  +A    +   DE LH N GI ++ +I  E P +  K  +  +   +    +LE
Sbjct: 173 FKGYLKNVANIIAWTSVDEQLHANAGIYILKKIFEERPEMKAKA-EADATDFIRNYIVLE 231

Query: 273 IAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSEVID 328
                    +G +          YM++  +    Q+GL   F  + +   P  W  E + 
Sbjct: 232 DKMLDWIFEQGELDFFGKKDLANYMRYRLDDSLTQLGLTKPFNISADEAKPMMWFEEEVF 291

Query: 329 LKKEKNFFETRVTEYQQ 345
             +  +FF  R T Y +
Sbjct: 292 SNELDDFFAKRPTAYTK 308


>gi|260904342|ref|ZP_05912664.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium
           linens BL2]
          Length = 326

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 122/308 (39%), Gaps = 28/308 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W +   LT++E+ +  R        +++      +++      P
Sbjct: 36  NFWLPEKVPLSNDIPSWAT---LTEEEKTLTMRVFTGLTLLDTIQGTVGAISLIPDAVTP 92

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169
                +   AF E+VH+ ++  I ++L   +   E F   RE   + +KA+  L Y +  
Sbjct: 93  HEEAVMTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSRENTYLQSKADIILSYYRGD 152

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                                V   + E   FY+GF   +      K+   A+  + I+R
Sbjct: 153 D---------------PLKRKVASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIRLIIR 197

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE++H  +      +          +E +  +  ++ E    E+AY H+      VGL A
Sbjct: 198 DEAVHGYYIGYKYQKGLESQSEERKQELKDYTMNLMFELYENEVAYTHDLY--DSVGL-A 254

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQ-- 344
             C+ ++ + AN+    +G E +F       NP    +   +  +  +FF    + Y   
Sbjct: 255 EDCKMFLHYNANKALMNLGYEAMFPKEVTEVNPAILAALSPNSDENHDFFSGSGSSYVIG 314

Query: 345 QGAELKWD 352
           +    + D
Sbjct: 315 KAENTEDD 322


>gi|194015457|ref|ZP_03054073.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           pumilus ATCC 7061]
 gi|194012861|gb|EDW22427.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           pumilus ATCC 7061]
          Length = 329

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/308 (22%), Positives = 117/308 (37%), Gaps = 20/308 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    LT  ER    + L      ++   N  + AI
Sbjct: 26  FYDQNVKQFWLPEEISLNGDLLAWKD---LTPAERDTYMKVLAGLTLLDTEQGNTGMPAI 82

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E    +F   +E   +  KA  
Sbjct: 83  MAHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPSETITAVFEWVKENRYLQRKAKL 142

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
                + +         K  D   L    V  V  E   FY+GF   L      +M+   
Sbjct: 143 ITDLYRDI---------KAGDDISLYKAMVASVYLESFLFYSGFYYPLYFYGQGRMMQSG 193

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I          +  + S  +L E    E+AY  +   
Sbjct: 194 EIINLIIRDEAIHGVYVGLLAQEIYNRQTDDVRADLHEWSLGLLTELYENEVAYTDDVY- 252

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETRV 340
            G VGL A   + ++++ AN+    +G +  F     NP   ++ +    K  +FF  + 
Sbjct: 253 -GAVGL-AHDVKAFVRYNANKALMNLGFDAHFPDELVNPIV-INGLSTKTKAHDFFSMQG 309

Query: 341 TEYQQGAE 348
             Y++   
Sbjct: 310 NGYKKATV 317


>gi|18466786|ref|NP_569593.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16506102|emb|CAD09988.1| putative ribonucleoside-diphosphate reductase beta subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
          Length = 380

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 125/338 (36%), Gaps = 26/338 (7%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   + M   +S +V +    KY    +      +  W P EV +  D   + +   L +
Sbjct: 12  DATKEPMFLGQSVNVARYDQQKYRDFEKLIEKQLSFFWRPEEVDITTDRIDFNT--KLQE 69

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            ER +   NL +    +S+   +    +   +S PE   ++   +F E +HS ++ +II 
Sbjct: 70  HERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPELETWVETWSFSETIHSRSYTHIIR 129

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-----------------TGTK 179
            +  D   +F+       I ++A         L   +                    G  
Sbjct: 130 GMVDDPSIVFDGIVTDEEIISRAVSISSEYDRLYEMTCARQHLGEDEFERLYISEFDGKP 189

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
              Q  L    V     E + FY  FA   + G    + G  +  ++I RDE+LH     
Sbjct: 190 YPLQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKLLEGNTKIMRFIARDEALHCEGTE 249

Query: 240 DVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
            +I  ++     L  K    E +      + +    E+ +A      G  +GLNA   + 
Sbjct: 250 RMIRFMRTGREGLMWKMIAAEEESFIYQTMMDVAGQEMRWADYLFKDGSMIGLNADILKS 309

Query: 295 YMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
           Y+++  N    ++GL  LF    ++P  WM++ +    
Sbjct: 310 YVKYRTNLAMRRLGLRQLFPEIKDDPLVWMNKWLLSDT 347


>gi|255324325|ref|ZP_05365446.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255298655|gb|EET77951.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 329

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 121/330 (36%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +DL  WK+   LT+ E+    R     
Sbjct: 20  NWNSIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++                AF E+VH+ ++  I  +L       + F 
Sbjct: 74  TLLDTIQGTVGAISLLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                           + E   FY+GF  
Sbjct: 134 WSEENENLQKKAKIILSYYKGDDPLKKKV---------------ASTLLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +       E ++ +  +L++
Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQAYKQLDEEHQAELKEYTFDLLYD 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 239 LYDNEIDYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +  +   D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDD 325


>gi|288933942|ref|YP_003438001.1| ribonucleoside-diphosphate reductase [Klebsiella variicola At-22]
 gi|290510980|ref|ZP_06550349.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           1_1_55]
 gi|288888671|gb|ADC56989.1| Ribonucleoside-diphosphate reductase [Klebsiella variicola At-22]
 gi|289775973|gb|EFD83972.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           1_1_55]
          Length = 320

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 119/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 11  NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L   +     F 
Sbjct: 65  TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA   L Y Q                          V  E   FY+GF  
Sbjct: 125 WSESCEPLQRKAQLMLGYYQADEPLKKKI---------------ASVFLESFLFYSGFWL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L +
Sbjct: 170 PMHFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+AY+ E    G  G        ++ + AN+    +G E LF       NP    +
Sbjct: 230 LYDNELAYSRELY--GESGW-FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G     A+  WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKTEETADDDWD 319


>gi|193890961|gb|ACF28634.1| ribonucleotide reductase [Amphidinium carterae]
          Length = 213

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 92/221 (41%), Gaps = 20/221 (9%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++   WE Y     + W   E+ +  D   W+S   LT  E+  IK  L FFA+S+ +V 
Sbjct: 1   QHADLWEMYKKHEASFWTAEEIDLSKDNVDWES---LTSSEQHFIKHVLAFFAASDGIVL 57

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPS 154
            N+       +  PE R +   Q   E +HS T+  +I     +  E   + N    +P+
Sbjct: 58  ENLAGQFACEIQVPEARAFYGFQIAMENIHSETYSLLIEQYIKEPQEKADILNAIETMPA 117

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  KA WA+Q+ Q              +  F + L  F  V EG+ F   F  I  L + 
Sbjct: 118 VAEKAKWAVQWMQR-------------ENSFTERLVAFAAV-EGILFSGSFCAIYWLKKR 163

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
             M G+    + I RDE LH +F   +  +++   P     
Sbjct: 164 GLMPGLTFSNELISRDEGLHADFACLIYRKLQNHLPEDVVH 204


>gi|320194816|gb|EFW69445.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           WV_060327]
          Length = 319

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------TSVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 QMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQEQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      +   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|295698298|ref|YP_003602953.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
           Riesia pediculicola USDA]
 gi|291156973|gb|ADD79418.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
           Riesia pediculicola USDA]
          Length = 375

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/336 (19%), Positives = 123/336 (36%), Gaps = 25/336 (7%)

Query: 18  NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   + M      ++++    KY           +  W P E+ +  D   ++S   L  
Sbjct: 11  DPLKEPMFFGNHVNISRFDQQKYSIFETLTEKQLSFFWRPEEIDISKDRIDYQS---LKL 67

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+ +  RNL +    +S+ + +   A    +S PE   ++   +F E +HS ++ YII 
Sbjct: 68  YEKKIFIRNLQYQILLDSIQSRSPNCAFLPIVSLPEVENWIETWSFSETIHSRSYTYIIR 127

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK-DADQEFLQDLFVFYV- 194
           ++  D   +F+       I  +A     Y   L        T  +   +  +      + 
Sbjct: 128 NIIDDPSLIFDKIVSNQEIIDRAKDISFYYDHLIQLIRLYQTFGEGIHKIHEKKVTVSLR 187

Query: 195 --------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
                           E + FY  FA   +      M G A+  + I RDE+LH+     
Sbjct: 188 ELKKSLYLCLISVNALESIRFYVSFACSFAFAEKELMEGNAKIIKLIARDEALHVTGTQH 247

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
           +IN ++         E  ++   +  +     +  E  +A      G  +GLN    ++Y
Sbjct: 248 MINIMQSSKEDKEMIEISKECLMICQKIFLNVSDQEKRWADYLFSNGNLIGLNKKILKEY 307

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
           + +I   R   IGL+       NP PW++  +    
Sbjct: 308 IDYITEVRMRAIGLKKDLIKKINPIPWINAWLSSDN 343


>gi|38639969|ref|NP_943924.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1]
 gi|33414658|gb|AAQ17701.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1]
          Length = 376

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 63/316 (19%), Positives = 116/316 (36%), Gaps = 25/316 (7%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +K+    +      +  W P EV +  D   +     L++ E+ +  +NL + +  +S+ 
Sbjct: 31  VKHPAIDKLTEKQLSFFWRPEEVDLSKDAIDYNQ---LSEAEQHVFTQNLKYQSLLDSVQ 87

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
                L     +S+     ++   +F E +HS ++ +I+ +L +D   +F+       I 
Sbjct: 88  GRAPNLVFLPIVSDVALETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDSKIM 147

Query: 157 AKANWALQYTQTLSS--------------PSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
           A+A    QY   L                P          +E L          E + FY
Sbjct: 148 ARATSVTQYYDNLIKELKTYDLLTQSVFSPELRVAQLTKVKEALYLAMHAVNALEAIRFY 207

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQ 258
             FA   S G    M G A+  + I RDE LHL     +I   +         E     +
Sbjct: 208 VSFACTFSFGERGIMEGNAKIMRLIARDEQLHLKGTQYLIRAWQNAEDDSEMYEIAKRLE 267

Query: 259 QKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316
            K+  +  E    E  +A + +      GL+  S   Y+ ++   R    GL    +   
Sbjct: 268 HKAVQIFLEVAEQEKEWARDLLGNVTIPGLSLSSMLDYIDYLTVSRMRSAGLPAPEELNI 327

Query: 317 --ENPFPWMSEVIDLK 330
             ++P PW+ + ++  
Sbjct: 328 GMKHPLPWIRKWLNSD 343


>gi|283786769|ref|YP_003366634.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter
           rodentium ICC168]
 gi|282950223|emb|CBG89859.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter
           rodentium ICC168]
          Length = 319

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 115/323 (35%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W+S   L   E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQS---LNAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L         +    
Sbjct: 67  DTIQNIAGAPSLMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTRDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA   L +  +                         V  E   FY+GF   + 
Sbjct: 127 ENAPLQRKAQIILAHYASDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   + P    ++ +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGMEKLPDAAREDLKNFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            E+ Y  E         +A   + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NEVRYTEELYADT---GHAEDVQAFLCYNANKAMMNLGYEALFPAEMAEVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVE 311


>gi|330013348|ref|ZP_08307619.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
 gi|328533536|gb|EGF60259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
           MS 92-3]
          Length = 320

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 119/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 11  NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L   +     F 
Sbjct: 65  TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA   L Y Q                          V  E   FY+GF  
Sbjct: 125 WSESCDPLQCKAQLMLGYYQADEPLKKKI---------------ASVFLESFLFYSGFWL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L +
Sbjct: 170 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+AY+ E    G  G        ++ + AN+    +G E LF       NP    +
Sbjct: 230 LYDNELAYSRELY--GESGW-FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G     A+  WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKMEETADDDWD 319


>gi|323966928|gb|EGB62356.1| ribonucleotide reductase [Escherichia coli M863]
 gi|327251394|gb|EGE63080.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
           coli STEC_7v]
          Length = 319

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +  +                       V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDNPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISMAQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETTW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|26249071|ref|NP_755111.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           CFT073]
 gi|227888210|ref|ZP_04006015.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           83972]
 gi|300986153|ref|ZP_07177743.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 45-1]
 gi|301050518|ref|ZP_07197394.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 185-1]
 gi|26109478|gb|AAN81681.1|AE016765_83 Ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
           CFT073]
 gi|227834850|gb|EEJ45316.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           83972]
 gi|300297774|gb|EFJ54159.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 185-1]
 gi|300407907|gb|EFJ91445.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 45-1]
 gi|307554652|gb|ADN47427.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
           ABU 83972]
 gi|315290985|gb|EFU50350.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 153-1]
          Length = 319

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 118/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAILSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A     ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVTAFLCYNANKALMNLGYEPLFPAGMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|49473850|ref|YP_031892.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           quintana str. Toulouse]
 gi|49239353|emb|CAF25686.1| Ribonucleotide reductase beta-chain [Bartonella quintana str.
           Toulouse]
          Length = 324

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 121/342 (35%), Gaps = 31/342 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            +  K  +    + N+L   K    W        N W+P +VP+ +D+  W S   LT++
Sbjct: 3   KITTKNPVVCAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTEE 56

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER +  R        +++      +++            L   AF EAVH+ ++  I ++
Sbjct: 57  ERKLTVRVFTGLTLLDTIQNTVGAISLMADAITEHEEAVLTNIAFMEAVHARSYSSIFST 116

Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L    +  + F    E   +  KA   L+  +                           +
Sbjct: 117 LCSTVEVDDAFRWSEENIHLQKKARLVLERYEASDPLKKKI---------------ASTL 161

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      K+   A+  + I+RDE++H  +          +      +
Sbjct: 162 LESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLNESKKQ 221

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +  S  +L +   +E  Y  +      +GL     + ++ + AN+    +G EPLF  
Sbjct: 222 EIKDFSFNLLFDLYNIECKYTEDLY--DALGLT-EDVKVFLHYNANKALMNLGFEPLFPP 278

Query: 316 T---ENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
                NP    +      +  +FF    + Y   +      D
Sbjct: 279 EVCRVNPAILAALSPSSDENHDFFSGAGSSYVIGKAVATTDD 320


>gi|238695114|ref|YP_002922308.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE]
 gi|220029250|gb|ACL78185.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE]
          Length = 388

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 125/353 (35%), Gaps = 40/353 (11%)

Query: 17  VNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           V++ ++ M            +   ++    E    + +  W P E+ +  D   +     
Sbjct: 11  VDIMNEPMFLGSGLGIARYDIQ--RHQVFEELIEKSLSFFWRPEEISLATDRIQY---LN 65

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           + D E+     NL +    +S+       A    +S+P    +L    F E +HS ++ +
Sbjct: 66  MGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTLDTWLQTWTFSETIHSRSYTH 125

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           I+ +  +D    F+   + P+I  +A    +Y   +            D  + ++     
Sbjct: 126 IMRNCFIDPASEFDQIIDNPAIMKRAESIGKYYDDVLYWIRKYENAKEDLRYWEERDDQT 185

Query: 194 VV---------------------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
            +                            E + FY  FA   S      + G A+  ++
Sbjct: 186 ALDDARRFFEDTKRDLMASIYLCAHCVNALEAIRFYVSFACTFSFAERGLLEGNAKIMKF 245

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPK 282
           I RDE LHL     +I Q +            +E + ++  +  +    E  +       
Sbjct: 246 IARDEQLHLKGTQYIIRQWQTGVDGDEWKQIAEELEGEATKIFLDVVEQEKEWVDHLFAM 305

Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
           G    L+    + Y++++A+ R    GL+  F    +P PWM + ++  + +N
Sbjct: 306 GAIPNLSPEILKTYVEYLADSRMRAAGLKSPFSVRRHPLPWMRKWLNSDEVQN 358


>gi|308068541|ref|YP_003870146.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
           reductase small subunit) [Paenibacillus polymyxa E681]
 gi|305857820|gb|ADM69608.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide
           reductase small subunit) [Paenibacillus polymyxa E681]
          Length = 321

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 120/309 (38%), Gaps = 21/309 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+P+ DD   W +   L+D E+    + LG     +++     +  I
Sbjct: 20  FWNQNIMQFWTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQI 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWA 162
             H+   + +  L   A  E +H+ ++  I T+L   E    +F    E P +  KA   
Sbjct: 77  MEHVDGLQRKAVLSFMAMMEQIHAKSYSSIFTTLASTEEIDGVFRWVEENPHLQTKAETI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            QY   + +P                     V+ E   FY+GF   L L    KM    E
Sbjct: 137 RQYYMNIHTPKDL-----------YLAMAASVLLESYLFYSGFFYPLYLAGQGKMTCSGE 185

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  +   +  +I  E      ++  Q    +L      E  Y  +    
Sbjct: 186 IIDLILRDESIHGVYVGVLAQEIYAELAEEEQRDLYQTLVGLLRYLHNNEEQYTEQIY-- 243

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             +GL     + ++++ AN+    +G +PLF+  E NP  + + +    K+ +FF  +  
Sbjct: 244 TPIGL-VDDVKVFLRYNANKAMMNLGFDPLFEEEEVNPIVF-NGISTHTKQHDFFSKKGN 301

Query: 342 EYQQGAELK 350
            Y +   ++
Sbjct: 302 GYVRAMNVE 310


>gi|293394770|ref|ZP_06639061.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
           odorifera DSM 4582]
 gi|291422721|gb|EFE95959.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
           odorifera DSM 4582]
          Length = 319

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 55/323 (17%), Positives = 115/323 (35%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W +   LT  E+ +  R        
Sbjct: 10  NWNRIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LTAKEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++        +      P         +F EAVH+ ++  I ++L       + +    
Sbjct: 67  DTIQNTVGAPTLIDDAITPHEEAVYSNISFMEAVHARSYSSIFSTLCQTRDVDDAYRWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA+  L + ++                         V  E   FY+GF   + 
Sbjct: 127 ENRALQKKADIILAHYRSDDPLLKKV---------------ASVFLESFLFYSGFYLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +   
Sbjct: 172 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEQVSATRRQQVKSFAFDLLQDLYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            E+ Y  E      VG      + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NEVRYTEELYDD--VGWT-EDVKTFLHYNANKALMNLGYEALFPPSMAEVNPAILSALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  + 
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVN 311


>gi|227542806|ref|ZP_03972855.1| ribonucleoside-diphosphate reductase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181432|gb|EEI62404.1| ribonucleoside-diphosphate reductase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 335

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 121/336 (36%), Gaps = 40/336 (11%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P ++P+ +D+  W +   L + E++   R     
Sbjct: 26  NWNEIEDEKDQEVWD---RLTGNFWLPEKIPVSNDIPSWNT---LNETEQIATMRVFTGL 79

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++                AF E+VH+ ++  I  +L       + F 
Sbjct: 80  TLLDTIQGTVGAVSLIPDAVTHHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 139

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  K    L+               D D +      +   + E   FY+GF  
Sbjct: 140 WSEENVNLQRKGEIILR---------------DYDGKNPYKRKIASTLLESFLFYSGFYL 184

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +++         E +  +  +  +
Sbjct: 185 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQRMQDNLSQAEKDELKDYTYDLTLD 244

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               E  Y  +      +G      ++++++ AN+  + +G E L+   E     +S  I
Sbjct: 245 LYDNEEQYTEDMY--DELGWT-EDVKRFLRYNANKALNNLGYEALYPSDETR---VSPAI 298

Query: 328 ------DLKKEKNFFETRVTEYQQGAE-----LKWD 352
                 +  +  +FF    + Y  GA        WD
Sbjct: 299 LSALSPNADENHDFFSGSGSSYVIGAVENTEDADWD 334


>gi|206577235|ref|YP_002236984.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
           pneumoniae 342]
 gi|206566293|gb|ACI08069.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
           pneumoniae 342]
          Length = 320

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 115/322 (35%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 11  NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L   +     F 
Sbjct: 65  TLLDTIQNTVGAPALMADSLTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA   L Y Q                          V  E   FY+GF  
Sbjct: 125 WSESCEPLQRKAQLMLGYYQADEPLKKKI---------------ASVFLESFLFYSGFWL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L +
Sbjct: 170 PMHFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+AY+ E    G  G        ++ + AN+    +G E LF       NP    +
Sbjct: 230 LYDNELAYSRELY--GESGW-FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
              +  +  +FF    + Y  G
Sbjct: 287 LSPNADENHDFFSGSGSSYVIG 308


>gi|227488208|ref|ZP_03918524.1| ribonucleoside-diphosphate reductase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091778|gb|EEI27090.1| ribonucleoside-diphosphate reductase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 335

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 121/336 (36%), Gaps = 40/336 (11%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+       N W+P ++P+ +D+  W +   L + E++   R     
Sbjct: 26  NWNEIEDEKDQEVWD---RLTGNFWLPEKIPVSNDIPSWNT---LNETEQIATMRVFTGL 79

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++                AF E+VH+ ++  I  +L       + F 
Sbjct: 80  TLLDTIQGTVGAVSLIPDAVTHHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 139

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  K    L+               D D +      +   + E   FY+GF  
Sbjct: 140 WSEENVNLQRKGEIILR---------------DYDGKNPYKRKIASTLLESFLFYSGFYL 184

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +++         E +  +  +  +
Sbjct: 185 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQRMQDNLSQAEKDELKDYTYDLTLD 244

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               E  Y  +      +G      ++++++ AN+  + +G E L+   E     +S  I
Sbjct: 245 LYDNEEQYTEDMY--DELGWT-EDVKRFLRYNANKALNNLGYEALYPSDETR---VSPAI 298

Query: 328 ------DLKKEKNFFETRVTEYQQGAE-----LKWD 352
                 +  +  +FF    + Y  GA        WD
Sbjct: 299 LSALSPNADENHDFFSGSGSSYVIGAVENTEDADWD 334


>gi|227548647|ref|ZP_03978696.1| ribonucleoside-diphosphate reductase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079261|gb|EEI17224.1| ribonucleoside-diphosphate reductase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 332

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 127/343 (37%), Gaps = 33/343 (9%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           ++  DK +     + N +   K    W+       N W+P +VP+ +D+  W++   L D
Sbjct: 12  LHAHDKPV--KAINWNTIPDDKDLEVWD---RLTGNFWLPEKVPVSNDIPSWRT---LND 63

Query: 77  DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
            E+    R        +++      +++                AF E+VH+ ++  I  
Sbjct: 64  YEKTATMRVFTGLTLLDTIQGTVGAVSLLPDAKTMHEEAVYTNIAFMESVHAKSYSNIFM 123

Query: 137 SLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
           +L       + F    E  S+  KA   L Y +  +                        
Sbjct: 124 TLADTPAINDAFRWSEENESLQRKAKIILSYYEGDNPHKKKV---------------AST 168

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           + E   FY+GF   +     +K+   A+  + I+RDE++H  +      + + +      
Sbjct: 169 LLESFLFYSGFYLPMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQRGQADLSQAER 228

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
            E +  +  +L++    E  Y  +      +G      ++++++ AN+  + +G E LF 
Sbjct: 229 DELKDYTFNLLYDLYENETQYTEDIY--DPLGWT-EDVKRFLRYNANKALNNLGYEGLFP 285

Query: 315 YTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
             E   +P    S   +  +  +FF    + Y   +  + + D
Sbjct: 286 QDETKVSPAILASLSPNADENHDFFSGSGSSYVIGKAEDTQDD 328


>gi|19553723|ref|NP_601725.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391364|ref|YP_226766.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           glutamicum ATCC 13032]
 gi|15430572|dbj|BAB64405.1| ribonucleoside diphosphate reductase [Corynebacterium glutamicum]
 gi|21325297|dbj|BAB99918.1| Ribonucleotide reductase beta subunit [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326705|emb|CAF21187.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 2 BETA CHAIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 334

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 125/332 (37%), Gaps = 35/332 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  W +   L + E+    R     
Sbjct: 25  NWNSIPDSKDLEVWD---RLTGNFWLPEKVPVSNDIKSWGT---LNEVEKAATMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++     +      L   AF E+VH+ ++  I  +L       + F 
Sbjct: 79  TLLDTIQGTVGAISLLPDADSLHEEAVLTNIAFMESVHAKSYSNIFMTLASTAEINDAFR 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                       +  V+ E   FY+GF  
Sbjct: 139 WSEENENLQRKAKIILSYYEGDD---------------PLKRKIASVILESFLFYSGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +     +K+   A+  + I+RDE++H  +      +   +      +E ++ +  +L++
Sbjct: 184 PMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTFDLLYD 243

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-----NPFPW 322
               E  Y+ +      +G      ++++++ AN+  + +G E LF   E     N    
Sbjct: 244 LYDNETQYSEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETKVSPNILSA 300

Query: 323 MSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
           +S   +  +  +FF    + Y   +    + D
Sbjct: 301 LSP--NADENHDFFSGSGSSYVIGKAENTEDD 330


>gi|37525251|ref|NP_928595.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784678|emb|CAE13578.1| ribonucleoside-diphosphate reductase 2 beta chain (ribonucleotide
           reductase 2) (R2f protein) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 319

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 123/329 (37%), Gaps = 29/329 (8%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++   K    W        N W+P ++P+ +D+  W +   LT +E+ +  R  
Sbjct: 7   CAINWNRIEDDKDLEVWN---RLTTNFWLPEKIPLSNDITSWNT---LTTEEKKLTIRVF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
                 +++       A+      P     +   +F EAVH+ ++  I ++L L     +
Sbjct: 61  TGLTLLDTIQNTVGAPALMEDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCLTTDVDD 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            +    +  S+  KA   L Y                         +  V  E   FY+G
Sbjct: 121 AYRWSEKSFSLQNKAKIILNYY---------------SYHHPLKKKIASVFLESFLFYSG 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   +       +   A+  + I+RDE++H  +      Q   ++  L  KE ++ + ++
Sbjct: 166 FYLPMYWSSRGILTNTADLIRLIIRDEAIHGYYIGYKFQQSLKKHSTLEQKEIKEFTFSL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWM 323
           L E    EI Y  E      VG      ++++ + AN+    +G E LF     N  P +
Sbjct: 226 LLELYENEIKYTEELY--DIVGWT-EDIKKFLHYNANKALMNLGYETLFPPEITNVSPTI 282

Query: 324 SEVI--DLKKEKNFFETRVTEYQQGAELK 350
              +  +  +  +FF    + Y  G  + 
Sbjct: 283 LSALSPNANENHDFFSGSGSSYVIGKAVN 311


>gi|319440834|ref|ZP_07989990.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           variabile DSM 44702]
          Length = 316

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 116/326 (35%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D N++   K    W       +N W+P ++P+ +D+  W++   L++ E+    R     
Sbjct: 7   DWNRIEDDKDLEVWN---RLTSNFWLPEKIPLSNDVQSWRT---LSEVEQATTMRVFAGL 60

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ +      + R    P          F E+VH+ ++  I  +L       + F 
Sbjct: 61  TYLDTIQSAIGAPVLARDAVTPHEEAVFANIHFMESVHARSYSSIFQTLATTPQINDAFR 120

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P++  K +  + + +                          V+ E   FY+GF  
Sbjct: 121 WVEEDPNMIYKRDRVISFYEGDD---------------PLRRKAASVILETFLFYSGFYL 165

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     +K+   A+  + I+RDE +H  +                 +  + +   +L +
Sbjct: 166 PLKWASHSKLTNTADIIRLIIRDEVVHGYYIGYKYQVGMAGWSSAEQQAIKDEVFDLLLD 225

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324
               E AY         +G      ++++++ AN+  + +G E +F   E    P    S
Sbjct: 226 LYDNECAYTETLY--DELGWT-EDVKRFLRYNANKALNNLGYEGVFPQDECRVSPAILAS 282

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
                 +  +FF    + Y  G   +
Sbjct: 283 LDPGANENHDFFSGSGSAYTIGTAEE 308


>gi|283835589|ref|ZP_06355330.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
           youngae ATCC 29220]
 gi|291068801|gb|EFE06910.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
           youngae ATCC 29220]
          Length = 319

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 116/327 (35%), Gaps = 28/327 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNRIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+      P     L   +F EAVH+ ++  I ++L         +    
Sbjct: 67  DTIQNIVGAPALMADSITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTTDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA   L +  + +                       V  E   FY+GF   + 
Sbjct: 127 ENNPLQRKAQIILAHYASDNPLQKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLAHISESAREELKNFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            E  Y  E       G  A   + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NEAQYTDELY--AETGW-ADDVKAFLCYNANKALMNLGYEALFPPEMAEVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
           + ++  +FF    + Y   +  E + D
Sbjct: 289 NAEENHDFFSGSGSSYVMGKAVETEDD 315


>gi|300718018|ref|YP_003742821.1| ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           billingiae Eb661]
 gi|299063854|emb|CAX60974.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           billingiae Eb661]
          Length = 319

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 116/326 (35%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + NQ+   K    W       +N W+P +VP+ +D+  W S   L  DE+ +  R     
Sbjct: 10  NWNQIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWNS---LNADEQQLTIRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++       A+      P     +   +F EAVH+ ++  I ++L         + 
Sbjct: 64  TLLDTIQNTVGAPALMADAVTPHEEAVMSNVSFMEAVHARSYSSIFSTLCHTTDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +   +  KA   L++                            V  E   FY+GF  
Sbjct: 124 WSEDNQPLQRKAEIILEHYHHDDPLKKKI---------------ASVFLESFLFYSGFYL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I++DE++H  +      +   +       E QQ +  +L  
Sbjct: 169 PMYWSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKESPARKDELQQFAVELLLA 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
               E+AY         VG +    ++++ + AN+    +G E LF       NP    +
Sbjct: 229 LYENELAYTEALYDG--VGWS-EEVKKFLHYNANKALMNLGYEALFPAEMTDVNPAILSA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  + 
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVD 311


>gi|3068719|gb|AAC14561.1| ribonucleoside diphosphate reductase small subunit [Corynebacterium
           ammoniagenes]
          Length = 329

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 122/330 (36%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P ++P+ +D+  W   N +T  E+L   R     
Sbjct: 20  NWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++   +            AF E+VH+ ++  I  +L       E F 
Sbjct: 74  TLLDTIQGTVGAISLLPDVETMHEEGVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFR 133

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y                             + E   FY+GF  
Sbjct: 134 WSEENENLQRKAKIIMSYYNGDDPLKKKV---------------ASTLLESFLFYSGFYL 178

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            + L    K+   A+  + I+RDES+H  +      Q   +      +E++  +  ++++
Sbjct: 179 PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYD 238

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               EI Y  +      +G      ++++++ AN+  + +G E LF   E   +P    S
Sbjct: 239 LYENEIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSS 295

Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
              +  +  +FF    + Y   +  +   D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDD 325


>gi|226312721|ref|YP_002772615.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacillus
           brevis NBRC 100599]
 gi|226095669|dbj|BAH44111.1| ribonucleoside-diphosphate reductase beta chain [Brevibacillus
           brevis NBRC 100599]
          Length = 316

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/308 (22%), Positives = 116/308 (37%), Gaps = 29/308 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+P+ DD   W     L+  ER   K+ LG     +++     +  I
Sbjct: 17  FWNQNIMQFWTDDEIPLSDDKMAWME---LSATERDTYKKVLGGLTLLDTVQGGVGMPKI 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWA 162
             H+   + +  L      E +H+ ++  I T+L   E    +F+     P +  KA   
Sbjct: 74  MEHVDGLQRKAVLAFMGMMEQIHAKSYSSIFTTLASTEEIDGIFSWVENNPHLQKKAALI 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +  Q +  P                  V  V  E   FY+GF   L L    KM    E
Sbjct: 134 SKRYQEIEKPKDL-----------YMAMVASVFLESYLFYSGFFYPLYLAGQGKMTSSGE 182

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H  +   +  ++      +      ++   +LHE    E AY       
Sbjct: 183 IIDLIVRDESIHGLYVGVLAQEVYQGLSVVEQTAAIEELYALLHELQENEEAYTTSLY-- 240

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL----KKEKNFFE 337
             +GL A     Y+++ AN+    +GL+PLF   E NP      V++      K+ +FF 
Sbjct: 241 TEIGL-ADEVHAYVRYNANKALMNLGLDPLFPEEEVNPI-----VLNGIRTQTKQHDFFS 294

Query: 338 TRVTEYQQ 345
            +   Y +
Sbjct: 295 KKGNGYVR 302


>gi|241206478|ref|YP_002977574.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860368|gb|ACS58035.1| Ribonucleoside-diphosphate reductase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 324

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 117/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      + +    +       L   +F EAVH+ ++  I ++L       + + 
Sbjct: 69  TLLDTIQNGVGSIRLMEDAATSHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  K+   ++  ++                         V  E   FY+GF  
Sbjct: 129 WSEENEFLQRKSALIMEQYRSGDPLKKKV---------------ASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLGDERKQEIKDFAFELLLE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VGL     ++++ + AN+    +G E LF       NP    +
Sbjct: 234 LYDNEAKYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323


>gi|145296522|ref|YP_001139343.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           glutamicum R]
 gi|140846442|dbj|BAF55441.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 334

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 125/332 (37%), Gaps = 35/332 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P +VP+ +D+  W +   L D E+    R     
Sbjct: 25  NWNSIPDSKDLEVWD---RLTGNFWLPEKVPVSNDIKSWGT---LNDVEKAATMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++     +      L   AF E+VH+ ++  I  +L       + F 
Sbjct: 79  TLLDTIQGTVGAISLLPDADSLHEEAVLTNIAFMESVHAKSYSNIFMTLASTAEINDAFR 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                       +  V+ E   FY+GF  
Sbjct: 139 WSEENENLQRKAKIILSYYEGDD---------------PLKRKIASVILESFLFYSGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +     +K+   A+  + I+RDE++H  +      +   +      +E ++ +  +L++
Sbjct: 184 PMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTFDLLYD 243

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-----NPFPW 322
               E  Y+ +      +G      ++++++ AN+  + +G E LF   E     N    
Sbjct: 244 LYDNETQYSEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETKVSPNILSA 300

Query: 323 MSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
           +S   +  +  +FF    + Y   +    + D
Sbjct: 301 LSP--NADENHDFFSGSGSSYVIGKAENTEDD 330


>gi|164688728|ref|ZP_02212756.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM
           16795]
 gi|164602204|gb|EDQ95669.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM
           16795]
          Length = 327

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 122/306 (39%), Gaps = 23/306 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+P E+ +  D+ +W   + L+ +ER + K+ LG     ++  ANN + ++
Sbjct: 25  FWDQNVKQFWLPEEISVSKDVKVW---SELSPEERNLYKKVLGGLTLLDTKQANNGIPSM 81

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS--LGLDEGELFNMYREVPSITAKANWA 162
                N + +  L      E +H+ ++  I T+     +  E+F      P++  KA   
Sbjct: 82  MSLTDNLQRKAVLSFMGTMEEIHAKSYSSIFTTLLTVPEIDEIFEWIESEPTLQKKAEIV 141

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L   +              D+  L       V  E   FY+GF   L L    KM+   E
Sbjct: 142 LAQYEN-----------TDDRYGLYMSMATSVFLESFLFYSGFFYPLFLAGQGKMMASGE 190

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDESLH  +   +  +I  +      KE++ K   +       EI Y +     
Sbjct: 191 IISLILRDESLHGKYIGLLAQEIFKDFSKEEQKEYKSKVMDVFDRLMENEINYTNTIYEG 250

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340
              GL A     ++++ ANR    +G +   +    NP   +   +  + +  +FF T+ 
Sbjct: 251 --TGL-ADEVINFLKYNANRAMENLGYDNRLEVDPVNPI--VLNGLSTETKTHDFFSTKG 305

Query: 341 TEYQQG 346
             YQ+G
Sbjct: 306 NGYQKG 311


>gi|38234435|ref|NP_940202.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200698|emb|CAE50394.1| ribonucleotide reductase beta-chain 1 [Corynebacterium diphtheriae]
          Length = 328

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 119/333 (35%), Gaps = 37/333 (11%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P ++P+ +D+  W +   L D E+    R     
Sbjct: 19  NWNSIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIKSWNT---LNDLEKQTTMRVFTGL 72

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++     +          AF E+VH+ ++  I  +L       + F 
Sbjct: 73  TLLDTIQGTVGAVSMLPDAVSLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPEINDAFR 132

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   L Y +                       V   + E   FY+GF  
Sbjct: 133 WSEENENLQKKAKIILSYYEGDD---------------PLKRKVASTLLESFLFYSGFYL 177

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +       E +  +  +L++
Sbjct: 178 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKFQQALRKETPERQAELKGYTFDLLYD 237

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               EI Y  +      +G      ++++++ AN+  + +G E LF   E     +S  I
Sbjct: 238 LYDNEIQYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEALFPADECR---VSPAI 291

Query: 328 ------DLKKEKNFFETRVTEYQ--QGAELKWD 352
                 +  +  +FF    + Y   +      D
Sbjct: 292 LSALSPNADENHDFFSGSGSSYVIGKAENTTDD 324


>gi|258622932|ref|ZP_05717948.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
           VM573]
 gi|258624605|ref|ZP_05719543.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
           VM603]
 gi|262165762|ref|ZP_06033499.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
           mimicus VM223]
 gi|262171415|ref|ZP_06039093.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
           mimicus MB-451]
 gi|258583152|gb|EEW07963.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
           VM603]
 gi|258584871|gb|EEW09604.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
           VM573]
 gi|261892491|gb|EEY38477.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
           mimicus MB-451]
 gi|262025478|gb|EEY44146.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
           mimicus VM223]
          Length = 323

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 68/333 (20%), Positives = 121/333 (36%), Gaps = 33/333 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +DL+ W     LT+ E+ +  R     
Sbjct: 13  NWNRLQDEKDLEIWN---RLTVNFWLPEKVPLSNDLSTW---GLLTEQEQTLTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++  +    A+            L   AF EAVH+ ++  + ++L   +   E F 
Sbjct: 67  TLLDTIQNSVGAPALMVDAVTQHEEAVLTNIAFMEAVHARSYSSVFSTLCTTKQIDEAFR 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L   Q    P                  +  V  E   FY+GF  
Sbjct: 127 WSEENPHLQRKAQLILHEYQAGECPLKKK--------------IASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          +       + +  + ++L +
Sbjct: 173 PMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLAYRQLDEAQQAQIKDYAFSLLFD 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
               E +Y         VGL     + ++ + AN+    +G EPLF       NP    +
Sbjct: 233 LYEAEASYTEFLY--DPVGLT-EEVKHFLHYNANKALMNLGFEPLFPEEVCEVNPAILAA 289

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
              +  +  +FF    + Y  G  +      WD
Sbjct: 290 LSPNADENHDFFSGSGSSYVIGQAVATQDEDWD 322


>gi|319645694|ref|ZP_07999925.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
           BT1B_CT2]
 gi|317392241|gb|EFV73037.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
           BT1B_CT2]
          Length = 330

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 69/315 (21%), Positives = 121/315 (38%), Gaps = 24/315 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L D E+    + L      ++   N  +  I
Sbjct: 24  FYEQNVKQFWLPEEISLNGDLLTWKH---LGDKEKDTYMKVLAGLTLLDTEQGNTGMPTI 80

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   ELF   +    +  KA  
Sbjct: 81  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTEKITELFEWVKTNRYLQRKAAI 140

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
                  + +          D   L    V  V  E   FY+GF   L      K++   
Sbjct: 141 IGGLYNAIEA---------GDDISLYKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQCG 191

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +         +  + +++ E    EIAY  E   
Sbjct: 192 EIINLIIRDEAIHGVYVGLLAQEIYNKKDEGTQHRLEMFALSLIEELYRNEIAYTEELYD 251

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
           +  VGL     ++++++  N+    +G  P F+  E NP   +   ++ K +  +FF  +
Sbjct: 252 Q--VGLT-HDVKKFIRYNGNKALSNLGFNPYFEEEEINPI--VLNGLNTKTKSHDFFSMK 306

Query: 340 VTEYQQGAE--LKWD 352
              Y++     LK D
Sbjct: 307 GNGYKKATVEPLKDD 321


>gi|262043918|ref|ZP_06017006.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038772|gb|EEW39955.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 320

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 119/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   L+  E+ +  R     
Sbjct: 11  NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTEL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L   +     F 
Sbjct: 65  TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA   L Y Q                          V  E   FY+GF  
Sbjct: 125 WSESCDPLQRKAQLMLGYYQADEPLKKKI---------------ASVFLESFLFYSGFWL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +          +E +  +  +L +
Sbjct: 170 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+AY+ E    G  G        ++ + AN+    +G E LF       NP    +
Sbjct: 230 LYDNELAYSRELY--GESGW-FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
              +  +  +FF    + Y  G     A+  WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKMEETADDDWD 319


>gi|260599071|ref|YP_003211642.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
           turicensis z3032]
 gi|260218248|emb|CBA33173.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Cronobacter
           turicensis z3032]
          Length = 320

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 116/333 (34%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 11  NWNKLQDEKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTPGEQQLTIRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L         + 
Sbjct: 65  TLLDTIQNAVGAPALMADALTPHEEAVLSNVSFMEAVHARSYSSIFSTLCQTPDVDAAYA 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L + +                          V  E   FY+GF  
Sbjct: 125 WSEENAPLQRKAQIILAHYRDDDPLKKKI---------------ASVFLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +      +  +  +  ++ E
Sbjct: 170 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQGLAQVDDARRESLKTFALDLMME 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               E+AY         VG        ++ + AN+    +G E LF       NP    +
Sbjct: 230 LYDNELAYTEALYRD--VGW-VDDVSAFLCYNANKALMNLGYEALFPPEMAQVNPSILAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK-----WD 352
                 +  +FF    + Y  G  ++     WD
Sbjct: 287 LSPGADENHDFFSGSGSSYVMGKAVETEDADWD 319


>gi|157159438|ref|YP_001463986.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           E24377A]
 gi|218555224|ref|YP_002388137.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           IAI1]
 gi|300815921|ref|ZP_07096145.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 107-1]
 gi|157081468|gb|ABV21176.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli E24377A]
 gi|218361992|emb|CAQ99598.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           [Escherichia coli IAI1]
 gi|300531850|gb|EFK52912.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
           coli MS 107-1]
          Length = 319

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 118/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ + AN+    +  EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLDYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|227833759|ref|YP_002835466.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184833|ref|ZP_06044254.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454775|gb|ACP33528.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 328

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 119/324 (36%), Gaps = 29/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++        W+      +N W+P +VP+ +D+  WK    + + E+    +     
Sbjct: 19  NWNEITDQVDKDVWD---RLTSNFWLPEKVPVSNDIPTWK---IMDEAEQWATMQVFTGL 72

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      L+I    + P         AF E+VH+ ++  I  +L         FN
Sbjct: 73  TMLDTMQGTVGALSILPDAATPHEEAVYTNIAFMESVHAKSYSNIFMTLADTPTINHAFN 132

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
             R+   +  KA+  L + +  +SP                      + E   FY+GF  
Sbjct: 133 WGRQSERLQYKAHRVLDFYKRGNSPMRK---------------AASTLLESFLFYSGFYL 177

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L +   +K+   A+  + I+RDE++H  +      Q           E Q K   +L +
Sbjct: 178 PLRMAAHSKLTNTADIIRLIIRDEAVHGYYIGYKYQQQVKHLDQAQQAELQSKVIDLLLD 237

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325
               E  Y  +      +G        ++++ AN+  + +G + ++      F    M+ 
Sbjct: 238 LMDNEEHYTRDLY--DPLGWT-EDVLAFLRYNANKALNNLGYDGIYPQDMCRFNPGVMTS 294

Query: 326 V-IDLKKEKNFFETRVTEYQQGAE 348
           +     +  +FF    + Y  G  
Sbjct: 295 LNPGADENHDFFSGSGSSYVIGTA 318


>gi|163867489|ref|YP_001608688.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           tribocorum CIP 105476]
 gi|161017135|emb|CAK00693.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
           tribocorum CIP 105476]
          Length = 324

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 122/342 (35%), Gaps = 31/342 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            +  K  + +  + N+L   K    W        N W+P +VP+ +D+  W   + LT++
Sbjct: 3   KITTKNPIVSAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSW---SSLTEE 56

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER +  R        +++      +++            L   AF EAVH+ ++  I ++
Sbjct: 57  ERKLTIRVFTGLTLLDTIQNTVGAISLLADAITEHEEAVLTNIAFMEAVHARSYSSIFST 116

Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L    +  + F    E   +  KA   L+  +                           +
Sbjct: 117 LCSTVEVDDAFRWSEENSHLQKKARLVLERYEANDPLKKKI---------------ASTL 161

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      K+   A+  + I+RDE++H  +          +      +
Sbjct: 162 LESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGYAKLEEAKRQ 221

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +  +  +L +   +E  Y  +      +GL     + ++ + AN+    +G E LF  
Sbjct: 222 EVKDFAFNLLFDLYNIECKYTEDLY--DSLGLT-EDVKIFLHYNANKALMNLGFEALFPP 278

Query: 316 T---ENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
                NP    S   +  +  +FF    + Y   +      D
Sbjct: 279 EVCHVNPAILASLSPNSDENHDFFSGAGSSYVIGKAVATTDD 320


>gi|156843271|ref|XP_001644704.1| hypothetical protein Kpol_1056p47 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115352|gb|EDO16846.1| hypothetical protein Kpol_1056p47 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 361

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 115/308 (37%), Gaps = 20/308 (6%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           E   +   + +L        L+P+K+   ++ Y       W   E+    D+  W  K  
Sbjct: 32  EVEESQSKEPILMENKSRFVLMPIKFHTVYDGYKKREALFWPAEEIDFSHDIINWGKKA- 90

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
            +D ++ +IK++L F   S  L +  +   I   +  PE + +   +   E +H   +  
Sbjct: 91  -SDHDKSIIKKSLAFLC-SSVLGSFYLPEHISSEVQIPEAKCFYGFEIMVENIHGEVYSL 148

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
            I  L  +  E+  M+        K     ++ +     SF     D +     +  V +
Sbjct: 149 AIDQLVHNTDEIKKMF--------KDVDNAKFIER--KKSFAERWFDKESSLFAEKLVAF 198

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              E ++    F  I+SL + + + G+    + I++D  +H +F + + +++K       
Sbjct: 199 SSIEAIFSLVSFFSIMSLEKKDIIPGLISGIKLILKDHIVHCDFQMSIYSELKKRLDPGI 258

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
            +    ++  +  E          +   K          +  ++++ +R     G +  F
Sbjct: 259 IERIVTEAVEIELE------TLEDDYFNKQLDKETKADIKNVIEYVGDRVLMGFGNQKHF 312

Query: 314 KYTENPFP 321
            ++ NP+ 
Sbjct: 313 -HSANPYD 319


>gi|294661479|ref|YP_003579932.1| NrdB ribonucleotide reductase B subunit [Klebsiella phage KP15]
 gi|292660640|gb|ADE34888.1| NrdB ribonucleotide reductase B subunit [Klebsiella phage KP15]
          Length = 402

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 124/363 (34%), Gaps = 37/363 (10%)

Query: 3   NNTGLSPIQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
               +  +       N  D+ M     + V +    K+           +  W P EV +
Sbjct: 8   KGKDMLTVMNTNPDHNHLDQPMFFGEDTGVARYESQKHKVFESLTQKQLSFFWRPEEVDL 67

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
             D   +     L + E+++   NL +    +++      LA     S+     ++   A
Sbjct: 68  STDRMQY---AKLPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSMETWIETWA 124

Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT--- 178
           F E +HS ++ +I  +L +D    F+      +I  ++    +Y  TL        T   
Sbjct: 125 FSETIHSRSYTHIQRNLHIDPSVQFDQILRNEAIMKRSASMTRYYDTLIDECHKLKTIMM 184

Query: 179 -------------------------KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
                                        +E L          E + FY  F+   +   
Sbjct: 185 LQEQVSGYKPNDPAVVYYNEQYAKQATKCKEALYLCMHAVNALEAIRFYVSFSFTFNFAE 244

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEAT 269
             KM G A+  + I RDE+LH       I   ++        E     ++++  +  E  
Sbjct: 245 QGKMEGNAKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMVEISRRLKKEATAIFLEVY 304

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
             E  +A      G   G++  S   Y++ + ++R   +GL+  F    NP+PWM++ + 
Sbjct: 305 EQEKEWAEHLFSVGDVEGVSLKSTIAYIEHLTDQRMRAVGLDSPFTPIPNPYPWMNKWLK 364

Query: 329 LKK 331
              
Sbjct: 365 SDN 367


>gi|291618545|ref|YP_003521287.1| NrdF [Pantoea ananatis LMG 20103]
 gi|291153575|gb|ADD78159.1| NrdF [Pantoea ananatis LMG 20103]
 gi|327394924|dbj|BAK12346.1| ribonucleoside-diphosphate reductase 2 beta subunit NrdF [Pantoea
           ananatis AJ13355]
          Length = 319

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 113/323 (34%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +DL  W++   L    + +  R        
Sbjct: 10  NWNRIQDEKDLEVWNRLTSNFWLPEKVPLSNDLPAWQT---LDKQHQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L         +    
Sbjct: 67  DTIQNVLGAPGLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHTSDVDAAYQWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA   L + +                          V  E   FY+GF   + 
Sbjct: 127 ENQALQNKAEIILTHYRADDPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +      +  QQ +  +L     
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKALEQVDEGRREALQQFAIDLLLALYE 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327
            E+ Y       G VG  A   + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NEVVYTEALY--GDVGW-AEEVKTFLHYNANKALMNLGYEALFPAELTQVNPAILSALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVE 311


>gi|237729635|ref|ZP_04560116.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
           30_2]
 gi|226908241|gb|EEH94159.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
           30_2]
          Length = 319

 Score =  139 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 115/328 (35%), Gaps = 30/328 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L   E+ +  R        
Sbjct: 10  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LNAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 67  DTIQNVAGAPALMADSLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA   L +  +                         V  E   FY+GF   + 
Sbjct: 127 ENTPLQRKAQIVLTHYASDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEHISESAREELKNFAFDLLMELYD 231

Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
            E  Y  E     G+V       + ++ + AN+    +G E LF       NP    +  
Sbjct: 232 NEARYTEELYAETGWV----DDVKAFLCYNANKALMNLGYEALFPPEMAEVNPTILAALS 287

Query: 327 IDLKKEKNFFETRVTEYQ--QGAELKWD 352
            +  +  +FF    + Y   +  E + D
Sbjct: 288 PNADENHDFFSGSGSSYVMGKAVETEDD 315


>gi|46143780|ref|ZP_00134247.2| COG0208: Ribonucleotide reductase, beta subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 336

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 124/323 (38%), Gaps = 27/323 (8%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   ++S  
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A    +S PE   ++    F E +HS ++ 
Sbjct: 66  -LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
           +II ++  D   +F+       I  +A     Y   L   S                 + 
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQYQ 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
              ++  ++    L    V+ E + FY  FA   +      M G A+  ++I RDE LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNVL-EAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLHL 243

Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
               +++N I             +E +Q++  +   A   E  +A      G  +GLN  
Sbjct: 244 TGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNED 303

Query: 291 SCEQYMQFIANRRCHQIGLEPLF 313
              +Y+++I N R   +GL   F
Sbjct: 304 ILVKYVEYITNIRMQAVGLPRPF 326


>gi|224584592|ref|YP_002638390.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224469119|gb|ACN46949.1| ribonucleotide-diphosphate reductase beta subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
          Length = 319

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 117/324 (36%), Gaps = 28/324 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +  +                         V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
            EI Y        G+V       + ++ + AN+    +G E LF       NP    +  
Sbjct: 232 NEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEIADVNPAILAALS 287

Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
            +  +  +FF    + Y  G  ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311


>gi|16761590|ref|NP_457207.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29143070|ref|NP_806412.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213052490|ref|ZP_03345368.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424576|ref|ZP_03357365.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213584527|ref|ZP_03366353.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
 gi|213650063|ref|ZP_03380116.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|289824437|ref|ZP_06544026.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25330821|pir||AH0841 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503891|emb|CAD05919.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29138703|gb|AAO70272.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 319

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 117/324 (36%), Gaps = 28/324 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +  +                         V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
            EI Y        G+V       + ++ + AN+    +G E LF       NP    +  
Sbjct: 232 NEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287

Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
            +  +  +FF    + Y  G  ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311


>gi|156932794|ref|YP_001436710.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156531048|gb|ABU75874.1| hypothetical protein ESA_00590 [Cronobacter sakazakii ATCC BAA-894]
          Length = 320

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 116/333 (34%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 11  NWNKLQDEKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTPGEQQLTIRVFTGL 64

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++       A+      P     L   +F EAVH+ ++  I ++L         + 
Sbjct: 65  TLLDTIQNAVGAPALMADALTPHEEAVLSNVSFMEAVHARSYSSIFSTLCQTPDVDAAYA 124

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L + +                          V  E   FY+GF  
Sbjct: 125 WSEENAPLQRKAQIILAHYRDDDPLKKKI---------------ASVFLESFLFYSGFYL 169

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      Q   +      +  +  S  ++ E
Sbjct: 170 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQALAQVDDARRESLKTFSLDLMME 229

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
               E+AY         VG        ++ + AN+    +G E LF       NP    +
Sbjct: 230 LYDNELAYTEALYRD--VGW-VDDVSAFLCYNANKALMNLGYEALFPPEMAQVNPSILAA 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK-----WD 352
                 +  +FF    + Y  G  ++     WD
Sbjct: 287 LSPGADENHDFFSGSGSSYVMGKAVETEDEDWD 319


>gi|17567153|ref|NP_508269.1| hypothetical protein F19G12.2 [Caenorhabditis elegans]
 gi|10864352|gb|AAG24065.1| Hypothetical protein F19G12.2 [Caenorhabditis elegans]
          Length = 668

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 25/229 (10%)

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
               E +HS  +  ++ +   D+ E   LFN       I AKA+W L++           
Sbjct: 444 IIAVENIHSEMYAKLLEAYIRDDAERNILFNAITTFKFIKAKADWCLRWI---------- 493

Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
              D +  F + L  F  V EG++F + FA I  L +   + G+    + I     LH N
Sbjct: 494 --SDHNAPFSERLAAFAAV-EGIFFSSSFAAIFWLKKRGLLPGLTHSNELISM-FLLHPN 549

Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
                 N  +   P       + +   +++E+ L+E  +  E++P   +G+N     +Y+
Sbjct: 550 CFFSTFNLQRRRKPA------ESRITEIINESVLVEQDFVRESLPTNLIGMNQHMMCKYV 603

Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +F+A+    ++G    +  T+NPF +M E I ++ + NFFE RV+EYQ+
Sbjct: 604 EFVADLLLEELGYSKRYN-TKNPFDFM-ENISIEGKTNFFEKRVSEYQR 650


>gi|488081|gb|AAA56996.1| ribonucleoside-diphosphate reductase small subunit [Drosophila
           melanogaster]
          Length = 214

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 105/235 (44%), Gaps = 25/235 (10%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157
           V    + +   E R +   Q   E VHS  +  +I +   D  +   LFN    +P++  
Sbjct: 2   VERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIETMPAVKR 61

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA+WAL +  +                   +  + +   EG++F   FA I  L +   M
Sbjct: 62  KADWALSWISS-------------KSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLM 108

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+    + I RDE LH +F + +   +         +  +++   ++ +A  +E  +  
Sbjct: 109 PGLTFSNELISRDEGLHCDFAVLMFQHLVQ-------RPKRERIIEIIRDAVAIEQEFLT 161

Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           + +P   +G+N     QY++F+A+R   ++G+  ++  T+NPF +M E+I L  +
Sbjct: 162 DALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISLDGK 214


>gi|333001013|gb|EGK20583.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri K-272]
 gi|333015483|gb|EGK34822.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           flexneri K-227]
          Length = 319

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 118/326 (36%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMLDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y  E   +      A   + ++ +  N+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNTNKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
              +  +  +FF    + Y  G  ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311


>gi|307547024|ref|YP_003899503.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
           elongata DSM 2581]
 gi|307219048|emb|CBV44318.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
           elongata DSM 2581]
          Length = 324

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 115/325 (35%), Gaps = 35/325 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W       +N W+P ++P+ +D+  W +   L D E+ +  R     
Sbjct: 15  NWNRLQDDKDLEVWN---RLTSNFWLPEKIPLSNDVPSWNT---LNDREQQLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       A+      P         +F E+VH+ ++  I ++L       + + 
Sbjct: 69  TLLDTIQGTIGAPALIEDAVTPHEEAVFTNISFMESVHARSYSSIFSTLCATRDVDDAYR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L+  +T                      V  V  E   FY+GF  
Sbjct: 129 WSEENTHLQNKAELILERYRTDD---------------PLMRKVASVFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      ++ +  +  +L +
Sbjct: 174 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEKESAERQRQIKDTTYDLLLD 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               E+ Y         VGL     + ++ + AN+    +G E LF         +   I
Sbjct: 234 LYDNEVQYTESLY--DEVGLT-EDVKAFLHYNANKALMNLGYEALFPNATEA---VDPAI 287

Query: 328 ------DLKKEKNFFETRVTEYQQG 346
                   ++  +FF    + Y  G
Sbjct: 288 LAALSPGAEENHDFFSGSGSSYVIG 312


>gi|157692410|ref|YP_001486872.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus pumilus
           SAFR-032]
 gi|194015081|ref|ZP_03053698.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           pumilus ATCC 7061]
 gi|157681168|gb|ABV62312.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus pumilus
           SAFR-032]
 gi|194014107|gb|EDW23672.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
           pumilus ATCC 7061]
          Length = 326

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/315 (20%), Positives = 126/315 (40%), Gaps = 24/315 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L + ER    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEISLNGDLLTWK---YLGEKERDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA+ 
Sbjct: 78  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETISEVFEWVKKNKFLQKKADM 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   +++         +  D   L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVSLYRSI---------QKDDPISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +      KE    S  +L+E    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTPDVQKELYDFSIDLLNELYENELHYTEDIYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
           +  +   +   ++++++ AN+    +G  P F+  E NP   +   ++ K +  +FF  +
Sbjct: 249 QVNL---SHDVKKFIRYNANKALMNLGFAPYFEEEEINPI--VLNGLNTKTKSHDFFSMK 303

Query: 340 VTEYQQGAE--LKWD 352
              Y++     LK D
Sbjct: 304 GNGYKKATVEPLKDD 318


>gi|121602770|ref|YP_988676.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           bacilliformis KC583]
 gi|120614947|gb|ABM45548.1| ribonucleoside-diphosphate reductase, beta subunit [Bartonella
           bacilliformis KC583]
          Length = 324

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 120/325 (36%), Gaps = 29/325 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +D+  W+S   LT++E+ +  R     
Sbjct: 15  NWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWES---LTEEEKKLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
              +++      +++            L   AF EAVH+ ++  I ++L   +D  + F 
Sbjct: 69  TLLDTVQNTVGAVSLMADAVTEHEEAVLTNIAFMEAVHARSYSSIFSTLCLTVDVDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L++ +                             E   FY+GF  
Sbjct: 129 WSEENVYLQKKAKLVLEHYEANDPLKKKI---------------ASTFLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          +      +E +  +  ML +
Sbjct: 174 PMYWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLGFAKLNEAQKQEMKDFTFNMLFD 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
              +E  Y  +      +GL     + ++ + AN+    +G E LF       NP    +
Sbjct: 234 LYNIECKYTEDLY--DSLGLT-EDVKVFLHYNANKALMNLGFESLFPSEVCRVNPAILAA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
              +  +  +FF    + Y  G  +
Sbjct: 291 LSPNSDENHDFFSGSGSSYVIGKAV 315


>gi|168262084|ref|ZP_02684057.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205349275|gb|EDZ35906.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 319

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 117/324 (36%), Gaps = 28/324 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +  +                         V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  KE +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIERKELKLFALDLLMELYD 231

Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
            EI Y        G+V       + ++ + AN+    +G E LF       NP    +  
Sbjct: 232 NEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287

Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
            +  +  +FF    + Y  G  ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311


>gi|56964873|ref|YP_176604.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus clausii
           KSM-K16]
 gi|56911116|dbj|BAD65643.1| ribonucleoside-diphosphate reductase beta chain [Bacillus clausii
           KSM-K16]
          Length = 334

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 124/309 (40%), Gaps = 22/309 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P EV +  DL  WK    LT  E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEVALNGDLLTWK---YLTPAEKDTYMKVLAGLTLLDTEQGNTGMPLV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   +LF   +  P +  KAN 
Sbjct: 78  AEHVQGHQRKAVLNFMAMMENAVHAKSYSNIFMTLATSEEINDLFEWVKVNPRLQKKANT 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +            D   L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVSIYKDIKR---------GDDISLFKALVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +      KE  Q +  +L E    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYIGLLAQEIYNKQSPDTQKELHQFAIELLDELYKNELLYTEDLYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
           +  VGL+    ++++++ AN+    +G +P F+  + NP   +   ++ K +  +FF  +
Sbjct: 249 Q--VGLS-HDVKKFIRYNANKALMNLGFDPYFEDEDINPI--VLNGLNTKTKSHDFFSMK 303

Query: 340 VTEYQQGAE 348
              Y++   
Sbjct: 304 GNGYKKATV 312


>gi|323145837|gb|ADX32078.1| hypothetical protein [Pseudomonas phage P3_CHA]
 gi|323146023|gb|ADX32263.1| hypothetical protein [Pseudomonas phage PAK_P3]
          Length = 344

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/317 (20%), Positives = 126/317 (39%), Gaps = 19/317 (5%)

Query: 36  PLKYGWAWEKYL-SACNNHWMPTEVPMQDDLALWKSKNGL------TDDERLMIKRNLGF 88
           P  Y WA E     A + HW   +  + DD   + S +GL       ++ + ++ + L  
Sbjct: 17  PFVYPWAVEAARVHAIDMHWDVHQADLTDDKQQYFSTSGLGTNQVPHENHKWLLDKTLSM 76

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
           F   +  V       +  ++ N E R +L+  A  E VH   +       G  +G+    
Sbjct: 77  FTEMDRTVGE-GYTKLLPYIKNNEIRNWLITAASREVVHQRAYALAAEEFGFTDGD---- 131

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           ++   S     +      +     S+      ++      +    +  EG+  +  F  +
Sbjct: 132 WKAFASYKEMRDKLEVMGENRIDASW------SEPLQAACILAQLLTGEGVGLFGAFTVL 185

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           L++ R  K++G  +  Q+ + DE+ H+   I V+  ++ +          Q+ R ++ + 
Sbjct: 186 LNMKRCGKLIGFNDINQWSLADETDHVEKNIRVLKAMRKDLTPEENSILDQEIRYLIEDY 245

Query: 269 TLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              E+ Y      KG    L      +Y+ ++   R  +  L    +  ENP PWM  +I
Sbjct: 246 REAEVKYLVLAFEKGPQHDLTFEQTVEYIDYLCRLRLFECELLKEHQVGENPLPWMEWMI 305

Query: 328 DLKKEKNFFETRVTEYQ 344
           +  +  NFFE +VT+Y 
Sbjct: 306 NAARHDNFFEKKVTDYS 322


>gi|62181312|ref|YP_217729.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161615703|ref|YP_001589668.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167552693|ref|ZP_02346445.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168822877|ref|ZP_02834877.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|197265553|ref|ZP_03165627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205353758|ref|YP_002227559.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858077|ref|YP_002244728.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|62128945|gb|AAX66648.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161365067|gb|ABX68835.1| hypothetical protein SPAB_03488 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197243808|gb|EDY26428.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205273539|emb|CAR38525.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205322691|gb|EDZ10530.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205340791|gb|EDZ27555.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|206709880|emb|CAR34233.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|320087214|emb|CBY96980.1| ribonucleoside-diphosphate reductase beta chain [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|322715798|gb|EFZ07369.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|326628866|gb|EGE35209.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 319

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 117/324 (36%), Gaps = 28/324 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +  +                         V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
            EI Y        G+V       + ++ + AN+    +G E LF       NP    +  
Sbjct: 232 NEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287

Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
            +  +  +FF    + Y  G  ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311


>gi|198241755|ref|YP_002216784.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197936271|gb|ACH73604.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326624542|gb|EGE30887.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 319

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 117/324 (36%), Gaps = 28/324 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDVAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +  +                         V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
            EI Y        G+V       + ++ + AN+    +G E LF       NP    +  
Sbjct: 232 NEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287

Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
            +  +  +FF    + Y  G  ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311


>gi|49475007|ref|YP_033048.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           henselae str. Houston-1]
 gi|49237812|emb|CAF27007.1| Ribonucleotide reductase beta-chain [Bartonella henselae str.
           Houston-1]
          Length = 324

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 121/342 (35%), Gaps = 31/342 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            +  K  +    + N+L   K    W        N W+P +VP+ +D+  W S   LT++
Sbjct: 3   KITTKNPVVCAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTEE 56

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER +  R        +++      +++            L   AF EAVH+ ++  I ++
Sbjct: 57  ERKLTIRVFTGLTLLDTIQNTVGAISLMADAITEHEEAVLTNIAFMEAVHARSYSSIFST 116

Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L    +  + F    E   +  KA   L+  +                           +
Sbjct: 117 LCSTVEVDDAFRWSEENIHLQKKARLVLERYEGNDPLKKKI---------------ASTL 161

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      K+   A+  + I+RDE++H  +          +      K
Sbjct: 162 LESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLDETKKK 221

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +  +  +L +   +E  Y  +      +GL     + ++ + AN+    +G E LF  
Sbjct: 222 EVKDFAFNLLFDLYNIECKYTEDLY--DALGLT-EDVKIFLHYNANKALMNLGFEALFPS 278

Query: 316 T---ENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
                NP    +   +  +  +FF    + Y   +      D
Sbjct: 279 EVCRVNPAILAALSPNSDENHDFFSGAGSSYVIGKAVATTDD 320


>gi|319406095|emb|CBI79725.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp. AR
           15-3]
          Length = 324

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 122/337 (36%), Gaps = 29/337 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            +  K  +    + N+L   K    W        N W+P +VP+ +D+  W S   LT++
Sbjct: 3   KITTKNPVVCAINWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTEE 56

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER +  R        +++      +++            L   AF EAVH+ ++  I ++
Sbjct: 57  ERKLTIRVFTGLTLLDTVQNTVGAISLIADAVTEHEEAVLTNIAFMEAVHARSYSSIFST 116

Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L    +  + F    E   +  KA   L++ +                           +
Sbjct: 117 LCSTVEVDDAFRWSEENTYLQKKARLILEHYEANEPLKKKI---------------ASTL 161

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      K+   A+  + I+RDE++H  +          +      +
Sbjct: 162 LESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLHEAKKQ 221

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +  +  +L +   +E  Y  +      +GL     + ++ + AN+    +G E LF  
Sbjct: 222 EIKDFAFNILFDLYNIECKYTEDLY--DAIGLT-EDVKVFLHYNANKALMNLGFEALFPP 278

Query: 316 T---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
                NP    +   +  +  +FF    + Y  G  +
Sbjct: 279 EVCRVNPAILAALSPNSDENHDFFSGSGSSYVIGKAV 315


>gi|168238723|ref|ZP_02663781.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194737146|ref|YP_002115764.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194712648|gb|ACF91869.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197288484|gb|EDY27861.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 319

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 118/324 (36%), Gaps = 28/324 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P++  KA   L +  +                         V  E   FY+GF   + 
Sbjct: 127 ENPTLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
            EI Y        G+V       + ++ + AN+    +G E LF       NP    +  
Sbjct: 232 NEIRYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287

Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
            +  +  +FF    + Y  G  ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311


>gi|327198239|ref|YP_004306815.1| putative ribonucleotide reductase B subunit [Pseudomonas phage
           KPP10]
 gi|297591765|dbj|BAJ09185.1| putative ribonucleotide reductase B subunit [Pseudomonas phage
           KPP10]
          Length = 339

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/317 (20%), Positives = 126/317 (39%), Gaps = 19/317 (5%)

Query: 36  PLKYGWAWEKYL-SACNNHWMPTEVPMQDDLALWKSKNGL------TDDERLMIKRNLGF 88
           P  Y WA E     A + HW   +  + DD   + S +GL       ++ + ++ + L  
Sbjct: 12  PFVYPWAVEAARVHAIDMHWDVHQADLTDDKQQYFSTSGLGTNQVPHENHKWLLDKTLSM 71

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
           F   +  V       +  ++ N E R +L+  A  E VH   +       G  +G+    
Sbjct: 72  FTEMDRTVGE-GYTKLLPYIKNNEIRNWLITAASREVVHQRAYALAAEEFGFTDGD---- 126

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
           ++   S     +      +     S+      ++      +    +  EG+  +  F  +
Sbjct: 127 WKAFASYKEMRDKLEVMGENRIDASW------SEPLQAACILAQLLTGEGVGLFGAFTVL 180

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           L++ R  K++G  +  Q+ + DE+ H+   I V+  ++ +          Q+ R ++ + 
Sbjct: 181 LNMKRCGKLIGFNDINQWSLADETDHVEKNIRVLKAMRKDLTPEENAILDQEIRYLIEDY 240

Query: 269 TLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              E+ Y      KG    L      +Y+ ++   R  +  L    +  ENP PWM  +I
Sbjct: 241 REAEVKYLVLAFEKGPQHDLTFEQTVEYIDYLCRLRLFECELLKEHQVGENPLPWMEWMI 300

Query: 328 DLKKEKNFFETRVTEYQ 344
           +  +  NFFE +VT+Y 
Sbjct: 301 NAARHDNFFEKKVTDYS 317


>gi|297622357|ref|YP_003703791.1| ribonucleotide reductase [Truepera radiovictrix DSM 17093]
 gi|297163537|gb|ADI13248.1| ribonucleotide reductase [Truepera radiovictrix DSM 17093]
          Length = 324

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/329 (20%), Positives = 121/329 (36%), Gaps = 21/329 (6%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           ML  R   + L P +Y        +  +++W+ TE  + +D+  ++      + ER ++ 
Sbjct: 1   MLTER--RSTLRPAEYPEFLAYRDAIRHSYWLHTEYNLTEDVNDYRVGVR--EAERQVLT 56

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           R L   A  E          +YR    PE        A  E  H   + +++  LGL + 
Sbjct: 57  RALLAIAQVEV-AVKTFWGDLYRKFPKPEVGAVGYTFAESEVRHQDAYAHLLELLGLTD- 114

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
             F    E P++  +    L        P    G  DA       + +F    E +  + 
Sbjct: 115 -AFARLHEAPALGER----LAVLDAHLVPVRQDGRDDA-----FSVALFSAFVEHVSLFG 164

Query: 204 GFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
            F  + +  +A  +  G+A   +   ++E +H  FG  ++  ++ E P  +   F  + R
Sbjct: 165 QFLILKAFNQATGRFKGVANIVEATSKEEQIHGMFGYKLVETLRRERPEWFGAAFSARLR 224

Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318
               +A   E A        G    L     E +MQ   N     +G  PL++       
Sbjct: 225 AACVDAERAERAILRWICEAGALPFLPLAQLEAFMQARFNGALVALGEAPLWEVDPALLA 284

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           P  W  E +   K+ +FF  R T Y +  
Sbjct: 285 PTRWFEEELLSSKQVDFFHKRPTAYAKKT 313


>gi|168244605|ref|ZP_02669537.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168464072|ref|ZP_02697989.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194442875|ref|YP_002042053.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194450827|ref|YP_002046771.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194401538|gb|ACF61760.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194409131|gb|ACF69350.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|195633109|gb|EDX51523.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|205336532|gb|EDZ23296.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 319

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 117/324 (36%), Gaps = 28/324 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +  +                         V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALNLLMELYD 231

Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
            EI Y        G+V       + ++ + AN+    +G E LF       NP    +  
Sbjct: 232 NEIRYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287

Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
            +  +  +FF    + Y  G  ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311


>gi|16766119|ref|NP_461734.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167992529|ref|ZP_02573627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168233769|ref|ZP_02658827.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194469894|ref|ZP_03075878.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197251114|ref|YP_002147708.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|204929699|ref|ZP_03220773.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|238909579|ref|ZP_04653416.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|585861|sp|P17424|RIR4_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta;
           AltName: Full=R2F protein; AltName: Full=Ribonucleotide
           reductase 2
 gi|4389108|pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium (Oxidized)
 gi|4389109|pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium (Oxidized)
 gi|4389155|pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium
 gi|4389156|pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
           Typhimurium
 gi|109157246|pdb|2BQ1|I Chain I, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
           Salmonella Typhimurium
 gi|109157247|pdb|2BQ1|J Chain J, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
           Salmonella Typhimurium
 gi|311979|emb|CAA51695.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16421357|gb|AAL21693.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|194456258|gb|EDX45097.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197214817|gb|ACH52214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|204321418|gb|EDZ06618.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205329263|gb|EDZ16027.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205332191|gb|EDZ18955.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|261247949|emb|CBG25782.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994924|gb|ACY89809.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301159373|emb|CBW18891.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913831|dbj|BAJ37805.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|321223605|gb|EFX48670.1| Ribonucleotide reductase of class Ib aerobic, beta subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323131164|gb|ADX18594.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332989685|gb|AEF08668.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 319

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 117/324 (36%), Gaps = 28/324 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +  +                         V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
            EI Y        G+V       + ++ + AN+    +G E LF       NP    +  
Sbjct: 232 NEIRYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287

Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
            +  +  +FF    + Y  G  ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311


>gi|322614368|gb|EFY11299.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322621567|gb|EFY18420.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322624428|gb|EFY21261.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322626626|gb|EFY23431.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322633514|gb|EFY30256.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638443|gb|EFY35141.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322639746|gb|EFY36430.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322643792|gb|EFY40342.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649478|gb|EFY45912.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655932|gb|EFY52232.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661327|gb|EFY57552.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322662525|gb|EFY58733.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666899|gb|EFY63074.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322671269|gb|EFY67392.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322677724|gb|EFY73787.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322681449|gb|EFY77479.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322683848|gb|EFY79858.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323193763|gb|EFZ78966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323197449|gb|EFZ82586.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203264|gb|EFZ88293.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205210|gb|EFZ90185.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212777|gb|EFZ97588.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323218081|gb|EGA02793.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221656|gb|EGA06069.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225124|gb|EGA09375.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230844|gb|EGA14962.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234805|gb|EGA18891.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238844|gb|EGA22894.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323241544|gb|EGA25575.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248309|gb|EGA32245.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323252925|gb|EGA36759.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256953|gb|EGA40662.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323260572|gb|EGA44183.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264370|gb|EGA47876.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269504|gb|EGA52957.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 319

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 115/323 (35%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +  +                         V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            EI Y      +          + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NEICYTEALYAETDW---VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311


>gi|161502142|ref|YP_001569254.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160863489|gb|ABX20112.1| hypothetical protein SARI_00165 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 319

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 113/323 (34%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L   E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LNAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQSKDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   + +  +                         V  E   FY+GF   + 
Sbjct: 127 ENPQLQRKAQIMMTHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKQSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
            E  Y      +          + ++ + AN+    +G E LF       NP    +   
Sbjct: 232 NETRYTEALYAETDW---VDDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVE 311


>gi|240849861|ref|YP_002971249.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           grahamii as4aup]
 gi|240266984|gb|ACS50572.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
           grahamii as4aup]
          Length = 324

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 121/342 (35%), Gaps = 31/342 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            +  K  +    + N+L   K    W        N W+P +VP+ +D+  W   + LTD+
Sbjct: 3   KITTKNPVVCAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSW---SSLTDE 56

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER +  R        +++      +++            L   AF EAVH+ ++  I ++
Sbjct: 57  ERKLTIRVFTGLTLLDTIQNTVGAISLLADAITEHEEAVLTNIAFMEAVHARSYSSIFST 116

Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L    +  + F    E   +  KA   L+  +                           +
Sbjct: 117 LCSTVEVDDAFRWSEENIHLQKKARLVLERYEANDPLKKKI---------------ASTL 161

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      K+   A+  + I+RDE++H  +          +      K
Sbjct: 162 LESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLDEAKKK 221

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +  +  +L +   +E  Y  +      +GL     + ++ + AN+    +G E LF  
Sbjct: 222 EIKDFAFNLLFDLYNIECKYTEDLY--DALGLT-EDVKIFLHYNANKALMNLGFEALFPP 278

Query: 316 T---ENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
                NP    +   +  +  +FF    + Y   +      D
Sbjct: 279 EVCRVNPAILAALSPNSDENHDFFSGAGSSYVIGKAVATTDD 320


>gi|76163066|gb|AAX30834.2| SJCHGC08068 protein [Schistosoma japonicum]
          Length = 230

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 19/206 (9%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
            +  ++ + +L        L P++Y   W  Y  A  + W   EV +  D   W+S   L
Sbjct: 33  SKDEIELEPLLKPNPHRFVLFPIEYHDIWHFYKKAVASFWTVEEVDLSKDFTHWES---L 89

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
              ER  I   L FFA+S+ +V  N++    + +  PE R +   Q   E +HS  +  +
Sbjct: 90  KVGERHFISYVLAFFAASDGIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLL 149

Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           I +   D  E   LFN    +  +  KA WAL +              D+   F + L  
Sbjct: 150 IDTYIKDSKERDFLFNAISNLTCVAKKAQWALDWI------------GDSKSTFAERLVA 197

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKM 217
           F  V EG++F   FA I  L   +  
Sbjct: 198 FAAV-EGVFFSGSFAAIFWLKSEDLC 222


>gi|319404590|emb|CBI78196.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
           rochalimae ATCC BAA-1498]
 gi|319407580|emb|CBI81230.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp.
           1-1C]
          Length = 324

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 121/337 (35%), Gaps = 29/337 (8%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
            +  K  +    + N+L   K    W        N W+P +VP+ +D+  W S   LT++
Sbjct: 3   KITTKNPVVCAVNWNRLYDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTEE 56

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ER +  R        +++      +++            L   AF EAVH+ ++  I ++
Sbjct: 57  ERKLTIRVFTGLTLLDTVQNTVGAISLMADAVTEHEEAVLTNIAFMEAVHARSYSSIFST 116

Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
           L    +  + F    E   +  KA   L++ +                            
Sbjct: 117 LCSTVEVDDAFRWSEENTYLQKKARLILEHYEADEPLKKKI---------------ASTF 161

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            E   FY+GF   +      K+   A+  + I+RDE++H  +          +      +
Sbjct: 162 LESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLDEAKKQ 221

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
           E +  +  +L +   +E  Y  +      +GL     + ++ + AN+    +G E LF  
Sbjct: 222 EIKDFAFNLLFDLYNIECKYTEDLY--DAIGLT-EDVKVFLHYNANKALMNLGFEALFPP 278

Query: 316 T---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
                NP    +   +  +  +FF    + Y  G  +
Sbjct: 279 EVCRVNPAILAALSPNSDENHDFFSGSGSSYVIGKAV 315


>gi|222081801|ref|YP_002541166.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
           radiobacter K84]
 gi|221726480|gb|ACM29569.1| ribonucleoside-diphosphate reductase [Agrobacterium radiobacter
           K84]
          Length = 329

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/327 (16%), Positives = 111/327 (33%), Gaps = 28/327 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P +VP+ +D+  W     L  +E+ +  R        
Sbjct: 20  NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIPSW---AALKPEEQQLTIRVFTGLTLL 76

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++  +     +                +F EAVH+ ++  I ++L       + +    
Sbjct: 77  DTIQTSIGAPTLMEDSITSHEEAVYSNISFMEAVHARSYSSIFSTLCSTPDIDDAYRWSE 136

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  K+   L+  +                       +  V  E   FY+GF   + 
Sbjct: 137 ENEHLQRKSALILEQYRNGD---------------PLKRKIASVFLESFLFYSGFYLPMY 181

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          +E +  +  +L E   
Sbjct: 182 WSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEEGRQEIKDFAFDLLLELYD 241

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
            E  Y         VGL     ++++ + AN+    +G E LF       NP    +   
Sbjct: 242 NEAKYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPPEACKVNPAILSALSP 298

Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
           +  +  +FF    + Y   +    + +
Sbjct: 299 NADENHDFFSGSGSSYVIGKAVATEDE 325


>gi|255023762|ref|ZP_05295748.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL J1-208]
          Length = 284

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 127/284 (44%), Gaps = 15/284 (5%)

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
             K    L++ E+      +G  A+ +S     I   I  ++++P         A +E +
Sbjct: 1   DAKQYPALSEQEKYAFDAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVI 59

Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
           H+ ++ Y++ S+    ++  +F + R  P+I  +    +       +        +   E
Sbjct: 60  HNESYSYVLASITNLQEQNRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGE 111

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            L    +   + EG+ FY+GFA   +L R NKM G  +   +I RDE  H  F  +VI  
Sbjct: 112 TLVKALIQSSILEGINFYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRA 171

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           I  ENP L T E  + +      A  LE  ++ E + +G  G++      Y+++ AN+  
Sbjct: 172 ILGENPELQTDELVEYTHDAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKML 230

Query: 305 HQIGLEPLFK-YTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
             +G+  L+  +++N   W+    D   + + +FFE R + Y++
Sbjct: 231 GMLGIPELYPGHSDNTMTWIKAYADNFTETKTDFFEMRNSSYKK 274


>gi|157148214|ref|YP_001455533.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter
           koseri ATCC BAA-895]
 gi|157085419|gb|ABV15097.1| hypothetical protein CKO_04025 [Citrobacter koseri ATCC BAA-895]
          Length = 319

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 117/324 (36%), Gaps = 28/324 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+ +    P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 67  DTIQNIAGAPALMQDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA   LQ+                  +      +  V  E   FY+GF   + 
Sbjct: 127 ENAPLQRKAQIILQHY---------------TADNPLKKKIASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +   +       E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKLSESERDELKHFALDLLMELYD 231

Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
            E  Y  E     G+V         ++ + AN+    +G E LF       NP    +  
Sbjct: 232 NESRYTEELYAETGWV----ADVNAFLCYNANKALMNLGYEALFPAEMAEVNPAILAALS 287

Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
            +  +  +FF    + Y  G  ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKAIE 311


>gi|34763895|ref|ZP_00144797.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
 gi|27886329|gb|EAA23602.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium
           nucleatum subsp. vincentii ATCC 49256]
          Length = 245

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 15/257 (5%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M        +   E    ++ ++++    +++  L  ++Y WA + Y +   N W+P +V
Sbjct: 1   MKVAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            +  D   ++    LT  ER      L F    +S+  NNI   I  H++ PE    L  
Sbjct: 61  DLTQDKNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAI 116

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           Q F+EA+HS ++QYII S+   +    +++ +R+   +  + ++  +  Q          
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID------ 170

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
             +   E    + +   + E ++FY GF     L   NKMVG ++  + I RDE  H+  
Sbjct: 171 --EQSDENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVL 228

Query: 238 GIDVINQIKIENPHLWT 254
                 +  I+      
Sbjct: 229 FRSEWAEKTIKTDGFCP 245


>gi|227505793|ref|ZP_03935842.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
 gi|227197639|gb|EEI77687.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
          Length = 318

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 114/319 (35%), Gaps = 34/319 (10%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +     N W+P ++P+ +DL  W     +  +E+    R      + ++L      ++
Sbjct: 20  EIWDRLTGNFWLPEKIPVSNDLPKW---GLMNAEEQWATMRVFAGLTALDTLQGAVGAIS 76

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
           +      P     L   AF EAVH+ ++  I  +L         F    E  ++  K+  
Sbjct: 77  LMPDAVTPHEEAVLCNIAFMEAVHAKSYSNIFMTLSSTPEINRAFRWAEESETLRYKSTR 136

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
             ++ +  +S                       + E   FY+GF   L       +   A
Sbjct: 137 VREFYEGDNS---------------LMRKAASTLLESFLFYSGFYLPLRFASRGYLTNTA 181

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RDE++H  +      Q   +      +  +     ++ +    EI Y  +   
Sbjct: 182 DVIRLIIRDEAVHGYYIGYKYQQAVKQLNPAQQQGLKDSVFDLVFDLYDNEITYTEKIY- 240

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI------DLKKEKNF 335
              +G      ++++++ AN+  + +G E LF   E     +   I      D  +  +F
Sbjct: 241 -DALGWT-EDVKRFLRYNANKALNNLGYEGLFPSDECR---VDPAILSSLAPDANETHDF 295

Query: 336 FETRVTEYQ--QGAELKWD 352
           F    + Y   +  E + D
Sbjct: 296 FSGSGSSYVIGKAEETQDD 314


>gi|69245952|ref|ZP_00603724.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO]
 gi|227552561|ref|ZP_03982610.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330]
 gi|257880353|ref|ZP_05660006.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257882206|ref|ZP_05661859.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,502]
 gi|257885400|ref|ZP_05665053.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,501]
 gi|257888211|ref|ZP_05667864.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257891012|ref|ZP_05670665.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257894265|ref|ZP_05673918.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|257896901|ref|ZP_05676554.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12]
 gi|257899642|ref|ZP_05679295.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15]
 gi|258614695|ref|ZP_05712465.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecium DO]
 gi|260562343|ref|ZP_05832857.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68]
 gi|261209282|ref|ZP_05923674.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6]
 gi|289567001|ref|ZP_06447402.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium D344SRF]
 gi|293378468|ref|ZP_06624631.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium PC4.1]
 gi|293553988|ref|ZP_06674590.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
 gi|293563177|ref|ZP_06677635.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1162]
 gi|293568383|ref|ZP_06679704.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1071]
 gi|293570828|ref|ZP_06681875.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
 gi|294615274|ref|ZP_06695151.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1636]
 gi|294617336|ref|ZP_06696975.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1679]
 gi|294623134|ref|ZP_06702020.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium U0317]
 gi|314939361|ref|ZP_07846602.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133a04]
 gi|314941564|ref|ZP_07848449.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133C]
 gi|314949609|ref|ZP_07852933.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0082]
 gi|314953716|ref|ZP_07856591.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133A]
 gi|314992172|ref|ZP_07857616.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133B]
 gi|314997663|ref|ZP_07862593.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133a01]
 gi|68195482|gb|EAN09926.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO]
 gi|227178310|gb|EEI59282.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330]
 gi|257814581|gb|EEV43339.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,230,933]
 gi|257817864|gb|EEV45192.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,502]
 gi|257821256|gb|EEV48386.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,501]
 gi|257824265|gb|EEV51197.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,141,733]
 gi|257827372|gb|EEV53998.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,410]
 gi|257830644|gb|EEV57251.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
           1,231,408]
 gi|257833466|gb|EEV59887.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12]
 gi|257837554|gb|EEV62628.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15]
 gi|260073267|gb|EEW61608.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68]
 gi|260076828|gb|EEW64563.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6]
 gi|289161202|gb|EFD09101.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium D344SRF]
 gi|291588904|gb|EFF20731.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1071]
 gi|291591871|gb|EFF23503.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1636]
 gi|291596409|gb|EFF27663.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1679]
 gi|291597503|gb|EFF28668.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium U0317]
 gi|291601845|gb|EFF32095.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
 gi|291604868|gb|EFF34344.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1162]
 gi|291609096|gb|EFF38371.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
 gi|292642797|gb|EFF60944.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium PC4.1]
 gi|313588298|gb|EFR67143.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133a01]
 gi|313593275|gb|EFR72120.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133B]
 gi|313594300|gb|EFR73145.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133A]
 gi|313599623|gb|EFR78466.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133C]
 gi|313641346|gb|EFS05926.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0133a04]
 gi|313644033|gb|EFS08613.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium TX0082]
          Length = 321

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 121/322 (37%), Gaps = 30/322 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W++ + L   E+  +    
Sbjct: 7   EAINWNEIEDIIDKSTWE---KLTEQFWLDTRIPLSNDLDDWRTLSQL---EKDTVGHVF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ + + +  + + +  P     L    F E+VH+ ++  I ++L   +   E
Sbjct: 61  GGLTLLDTVQSESGMDQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F+     P +  KA    +                       +  +  V  E   FY+G
Sbjct: 121 IFDWTNTNPYLQKKAERINEIY---------------KHGTPLEKKIASVFLETFLFYSG 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E P    +  +     +
Sbjct: 166 FYTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETLKDWMYNL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L+E    E  Y  E      +G      + ++++ AN+    +G++PLF       NP  
Sbjct: 226 LYELYENEERYTEELY--DPIGWT-EEVKTFLRYNANKALMNLGMDPLFPDTANDVNPIV 282

Query: 322 WMSEVIDLKKEKNFFETRVTEY 343
            M+ +       +FF      Y
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGY 303


>gi|319948549|ref|ZP_08022680.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea
           P4]
 gi|319437796|gb|EFV92785.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea
           P4]
          Length = 338

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 117/311 (37%), Gaps = 31/311 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+P +VP+ +D+  W++   LT+ E+ M  R        +++      +++    S P
Sbjct: 48  NFWLPEKVPVSNDIPSWQT---LTEYEQTMTARVFTGLTLLDTIQGTVGAVSMIPDASTP 104

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTL 169
                L   AF E+VH+ ++  I ++L       E F    E P +  KA   L Y    
Sbjct: 105 HEEAVLTNIAFMESVHAKSYSTIFSTLCSTPQIDEAFRWAEENPYLQRKAKIILGYYAG- 163

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                         +      +  V+ E   FY+GF   +      K+   A+  + I+R
Sbjct: 164 --------------DNPLKRKIASVMLESFMFYSGFYLPMRWSSRAKLTNTADVIRLIIR 209

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE++H  +      +           E +  +  +L E    E  Y  +      VG   
Sbjct: 210 DEAVHGYYIGYKYQRGLEHVTQAERDELKDYTFELLFELYDNEADYTEDLY--DPVGWT- 266

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
              ++++++ AN+    +G E +F   E   +P    +   +  +  +FF    + Y  G
Sbjct: 267 EDVKKFLRYNANKALMNMGYEGMFPKDETDVDPAILSALSPNADENHDFFSGSGSSYVMG 326

Query: 347 AE-----LKWD 352
                    WD
Sbjct: 327 KAEATEDEDWD 337


>gi|310722637|ref|YP_003969460.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5]
 gi|306021480|gb|ADM80014.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5]
          Length = 376

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 121/317 (38%), Gaps = 27/317 (8%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +K+    +      +  W P EV +  D+  +   + LT+ E+ +  +NL + +  +S+ 
Sbjct: 31  VKHPVIDKLTEKQLSFFWRPEEVDLSKDMIDF---SRLTEAEQYVFTQNLKYQSLLDSVQ 87

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
                L     +S+     ++   +F E +HS ++ +I+ +L ++  E+F+       I 
Sbjct: 88  GRAPNLTFLPMVSDIALETWITTWSFSETIHSRSYTHIMRNLYVNPTEVFDRIMLDEKIM 147

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF---------------EGMWF 201
            +A    QY   L      T      Q F   L V  +                 E + F
Sbjct: 148 KRATAVTQYYDDLIREK-RTYDMLCCQVFPAGLQVQQLTKVKEALYLAKHAVNALEAIRF 206

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----F 257
           Y  FA   S      M G A+  + I RDE LHL      I   +         +     
Sbjct: 207 YVSFACTFSFAERGLMEGNAKIMKLIARDEQLHLKGTQYQIRTWQNGEDDPEMVDIAKRL 266

Query: 258 QQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-- 314
           + K+  +  +A   E  +A + + +     L+  S   Y+ ++   R    GL    +  
Sbjct: 267 ESKAVQIFLDAAEQEKEWARDLLSRVSIPSLSLQSMLDYIDYLTASRMQSAGLPIPEELN 326

Query: 315 -YTENPFPWMSEVIDLK 330
             +++P PW+ + ++ +
Sbjct: 327 VPSKHPLPWIRKWLNSE 343


>gi|289423472|ref|ZP_06425274.1| ribonucleoside-diphosphate reductase, beta subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289156106|gb|EFD04769.1| ribonucleoside-diphosphate reductase, beta subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 337

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 116/304 (38%), Gaps = 19/304 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+P EVP+  D+  W     LT+ ER++ KR L      ++   N+ + ++
Sbjct: 36  FWDQNVKQFWLPEEVPISKDIPSWAE---LTESERILYKRVLAGLTLLDTKQGNDGIPSM 92

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
                N + +  L      E +H+ ++  I T+L    +  +LF    E P +  KA   
Sbjct: 93  MDLTENFQRKAVLSFMGTMEEIHAKSYSSIFTTLLSKHEIDDLFLWIEEEPLLQNKAKIV 152

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L+  + +  P                     V  E   FY+GF   L L    KM+   E
Sbjct: 153 LRQYKNVEDPKSL-----------YMSMATSVFLESFLFYSGFFFPLYLAGQGKMIASGE 201

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDESLH  +   +  +   E  +    E +     +L E    E  Y       
Sbjct: 202 IISLILRDESLHGKYIGLLAQEKLREFSYDDRNELKDAVYRLLKELMENEEKYTRMLYEG 261

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             +GL       ++++ AN     +G E  +K        ++ +    K  +FF T+   
Sbjct: 262 --LGL-EDQVINFLRYNANSALVNLGFEEFYKVEPVNAIVLNGLSTETKTHDFFSTKGNG 318

Query: 343 YQQG 346
           YQ+G
Sbjct: 319 YQKG 322


>gi|319899230|ref|YP_004159323.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
           clarridgeiae 73]
 gi|319403194|emb|CBI76753.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
           clarridgeiae 73]
          Length = 324

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 117/325 (36%), Gaps = 29/325 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P +VP+ +D+  W S   LT++ER +  R     
Sbjct: 15  NWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              +++      +++            L   AF EAVH+ ++  I ++L    +  + F 
Sbjct: 69  TLLDTVQNTVGAISLMADAVTEHEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA   L++ +                           + E   FY+GF  
Sbjct: 129 WSEENTYLQKKARLILEHYEANEPLKKKI---------------ASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +                 +E +  +  ML +
Sbjct: 174 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFANLDKAKRQEIKDFAFNMLFD 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
              +E  Y         +GL     + ++ + AN+    +G E LF       NP    +
Sbjct: 234 LYNIECKYTENLY--DSIGLT-EDVKVFLHYNANKALMNLGFEALFPPEVCRVNPAILAA 290

Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
              +  +  +FF    + Y  G  +
Sbjct: 291 LSPNSDENHDFFSGSGSSYVIGKAV 315


>gi|308173699|ref|YP_003920404.1| ribonucleoside-diphosphate reductase minor subunit [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606563|emb|CBI42934.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553367|gb|AEB23859.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           amyloliquefaciens TA208]
 gi|328911843|gb|AEB63439.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
           amyloliquefaciens LL3]
          Length = 329

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 63/309 (20%), Positives = 126/309 (40%), Gaps = 22/309 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA+ 
Sbjct: 78  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAHT 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +         K  D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 VVGLYRAI---------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +       E ++ +  +L E    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEAKKAELREFAIELLEELYHNELEYTEDLYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
           +  VGL+    ++++++ AN+    +G +P F+  + NP   +   ++ K +  +FF  +
Sbjct: 249 Q--VGLS-HDVKKFIRYNANKALMNLGFDPYFEEEDINPI--VLNGLNTKTKSHDFFSMK 303

Query: 340 VTEYQQGAE 348
              Y++   
Sbjct: 304 GNGYKKATV 312


>gi|216905873|ref|YP_002333501.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 9]
 gi|216410027|dbj|BAH02445.1| small subunit of ribonucleotide reductase [Equid herpesvirus 9]
          Length = 321

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 117/313 (37%), Gaps = 34/313 (10%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W+ T++P+ DDL        LT  ER   +    F ++++ LV  N
Sbjct: 28  PDIEHLRSLSVANRWLDTDLPISDDLKD---VAKLTPAEREFYRFLFAFLSAADDLVNLN 84

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG----ELFNMYREVPSI 155
            +  +    +  +   Y + Q   E  HS  +  I   L  ++               +I
Sbjct: 85  -LGDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDAAARARYVASIIGDAAI 143

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K  W                 K  +   + + ++  ++ EG++F + FA I  L   N
Sbjct: 144 KRKVAW--------------LQAKVRECGSVAEKYILMILIEGLFFASSFASIAYLRTHN 189

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V   +    I RDE++H      + N         + K   ++   +  EA  +E  +
Sbjct: 190 LFVVTCQSNDLISRDEAIHTRASCCIYNNYL----GGFEKPEPKRIYELFSEAVNIECEF 245

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKK 331
                P+    L+      Y+++ A+R   +IGL PLF      T  P  +M+    ++K
Sbjct: 246 LLSHAPQNSHLLDIGEIISYVRYSADRLLGEIGLSPLFNAPKPSTSFPLAFMT----VEK 301

Query: 332 EKNFFETRVTEYQ 344
             NFFE R T Y 
Sbjct: 302 HTNFFERRSTAYS 314


>gi|296117839|ref|ZP_06836422.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969070|gb|EFG82312.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 328

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 120/333 (36%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N +        W+       N W+P ++P+ +D+  W+    +T  E+    +  
Sbjct: 17  EGINWNDIGDSIDNDIWD---RLTTNFWLPEKIPVSNDVQSWR---NMTAQEQDATLKVF 70

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
                 ++L      +++  H   P+        AF E+VH+ ++  I  +L       E
Sbjct: 71  TGLTVLDTLQGTVGAVSLIPHAVTPQEEAVYTNIAFMESVHAKSYSNIFMTLASTPEIDE 130

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            F   RE   +  KA   L    +                  + +FV  V+ E   FY+G
Sbjct: 131 AFRWARENEHMQYKARKILSEYASGE---------------PEKMFVASVMLESFLFYSG 175

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L +    K+   A+  + I+RDE++H  +           N        Q +   +
Sbjct: 176 FYLPLRMASTGKITNAADIIRLIIRDEAIHGYYIGYKYQNYLK-NDKARHAANQDEIVDL 234

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--W 322
           L +    E  +      +  +G      + ++++ AN+  + +G E +F   E  F    
Sbjct: 235 LLDLYDNESHFTEAVYDQ--IGWT-EDVKAFLRYNANKAMNNLGYEAIFPQEECKFNAGV 291

Query: 323 MSEV-IDLKKEKNFFETRVTEYQ--QGAELKWD 352
           M+ +     +  +FF    + Y   +  E   D
Sbjct: 292 MTSLDPSANENHDFFSGSGSSYVIGKAEETTDD 324


>gi|255724184|ref|XP_002547021.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404]
 gi|240134912|gb|EER34466.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404]
          Length = 252

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L        + P+KY   W  Y  A  + W   EV +  DL  W   N L D+ER 
Sbjct: 89  EEPLLQENKRRYVMFPIKYHEIWNFYKKAEASFWTCEEVDLSKDLDDWN--NKLNDNERY 146

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            + R L FFA+S+ +V  N++      + +PE + +   Q   E +HS  +  +I +   
Sbjct: 147 FVSRVLAFFAASDGIVGENLIENFSAEVQSPEAKSFYGFQIMMENIHSEMYSLLIETYVK 206

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQT 168
           D  E   LFN    +P IT KA WA+++ Q 
Sbjct: 207 DPQEADFLFNAIENIPCITKKAEWAIKWIQD 237


>gi|311068263|ref|YP_003973186.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           atrophaeus 1942]
 gi|310868780|gb|ADP32255.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           atrophaeus 1942]
          Length = 328

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 67/315 (21%), Positives = 129/315 (40%), Gaps = 24/315 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA  
Sbjct: 78  ADHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKFLQKKAQI 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   Q++         K  D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVGLYQSI---------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  + P     E ++ S  +L +    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYIGLLAQEIYNKQPEEKKAELREFSIELLEQLYENELEYTEDLYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
           +  VGL+    ++++++ AN+    +G +  F+  E NP   +   ++ K +  +FF  +
Sbjct: 249 Q--VGLS-HDVKKFIRYNANKALMNLGFDSYFEEEEINPI--VLNGLNTKTKSHDFFSMK 303

Query: 340 VTEYQQGAE--LKWD 352
              Y++     +K D
Sbjct: 304 GNGYKKATVEPIKDD 318


>gi|12084869|ref|NP_073334.1| ribonucleotide reductase subunit 2 [Meleagrid herpesvirus 1]
 gi|11095873|gb|AAG30080.1|AF282130_43 UL40 ribonucleotide reductase small subunit [Meleagrid herpesvirus
           1]
 gi|12025152|gb|AAG45778.1|AF291866_45 UL40 ribonucleotide reductase, small subunit [Meleagrid herpesvirus
           1]
          Length = 355

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 118/312 (37%), Gaps = 20/312 (6%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W  TE  + DDL        L++DE+   +    F ++++ LV  N
Sbjct: 63  PDIGNLRSLSIMNRWTETEFVIADDLED---VGKLSEDEKNFYRFLFTFLSAADDLVNLN 119

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
            + ++    +  +   Y   Q   EAVHS  +  I   L  ++      Y      +   
Sbjct: 120 -IDSLLSLFTQKDIHHYYFEQECIEAVHSRAYSIIQLMLFSNDQAARQEYVTSTLRSPAI 178

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
              L++ +           + A+   + + ++  ++ EG++F   FA I  L   N  V 
Sbjct: 179 LSKLEWLER----------RVAECTSIAEKYILMILIEGIFFTASFAAIAYLRVNNLFVV 228

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
             +    I RDE++H+     +       N     K    +  T+  EA  LE  +    
Sbjct: 229 TCQINNLISRDEAIHVEASCCIFK-----NYLAGPKPTTARIHTLFKEAVRLECEFLRTA 283

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
            P+    +N  +   Y+++ A+R    + + P++   + P  +   ++      NFFE R
Sbjct: 284 APRTSNIINIDAICSYVRYSADRLLRALDILPIYDEPKPPADFPLVLMSAASNTNFFERR 343

Query: 340 VTEYQQGAELKW 351
            T Y  G+    
Sbjct: 344 NTAYS-GSVSND 354


>gi|308187851|ref|YP_003931982.1| ribonucleoside-diphosphate reductase beta chain [Pantoea vagans
           C9-1]
 gi|308058361|gb|ADO10533.1| ribonucleoside-diphosphate reductase beta chain [Pantoea vagans
           C9-1]
          Length = 326

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 116/323 (35%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +DL  W++   L   ++ +  R        
Sbjct: 17  NWNRIQDDKDLEVWNRLTSNFWLPEKVPLSNDLPGWQT---LDKQQQQLTIRVFTGLTLL 73

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 74  DTIQNVIGAPGLMEDAITPHEEAVLSNISFMEAVHARSYSSIFSTLCNTQDVDAAYQWSE 133

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA   L++ +                          V  E   FY+GF   + 
Sbjct: 134 ENGPLQNKARIILEHYRADDPLKKKI---------------ASVFLESFLFYSGFWLPMY 178

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      Q       L  +E QQ +  +L     
Sbjct: 179 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQALASADDLRREELQQFAYDLLLALYE 238

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+AY       G VG      + ++ + AN+    +G E LF       NP    +   
Sbjct: 239 NEVAYTEALY--GDVGW-VDEVKTFLHYNANKALMNLGYEALFPAELTAVNPAILSALSP 295

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 296 NADENHDFFSGSGSSYVMGKAVE 318


>gi|332031690|gb|EGI71130.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex
           echinatior]
          Length = 210

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 22/208 (10%)

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           LFN    +P +  KANWAL +                +     +  V +   EG++F   
Sbjct: 10  LFNAIETLPCVRKKANWALNWIN-------------HESATFPERVVAFAAVEGIFFSGS 56

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           FA I  L +   M G+    + I RDE LH +F   +   I  +          ++ +++
Sbjct: 57  FAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFKHIVQKPSF-------ERVKSI 109

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           + +A  +E  +  + +P   +G+N      Y++F+A+R    +G E ++  +ENPF +M 
Sbjct: 110 VMDAVEIEKEFLTQALPVELIGMNRTFMCNYIEFVADRLFVALGFEKVYN-SENPFSFMD 168

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352
             I +  + NFFE +V EY++   ++ D
Sbjct: 169 -FISMMGKTNFFEKKVGEYKKFGVMEED 195


>gi|52080345|ref|YP_079136.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           licheniformis ATCC 14580]
 gi|52785724|ref|YP_091553.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           licheniformis ATCC 14580]
 gi|319645870|ref|ZP_08000100.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
           BT1B_CT2]
 gi|52003556|gb|AAU23498.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
           licheniformis ATCC 14580]
 gi|52348226|gb|AAU40860.1| NrdF [Bacillus licheniformis ATCC 14580]
 gi|317391620|gb|EFV72417.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
           BT1B_CT2]
          Length = 325

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/309 (20%), Positives = 123/309 (39%), Gaps = 22/309 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPLV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA  
Sbjct: 78  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQI 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +         +  D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVGLYEKI---------RQGDKISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +      +E    S  +L E    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNQQTPEKKEELYAFSIDLLKELYENELEYTEDLYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
           +  VGL+    ++++++ AN+    +G E  F+  E NP   +   ++ K +  +FF  +
Sbjct: 249 Q--VGLS-HDVKKFIRYNANKALMNLGFEAYFEEEEINPI--VLNGLNTKTKSHDFFSMK 303

Query: 340 VTEYQQGAE 348
              Y++   
Sbjct: 304 GNGYKKATV 312


>gi|317049232|ref|YP_004116880.1| ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
 gi|316950849|gb|ADU70324.1| Ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
          Length = 322

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 115/323 (35%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +DL  W++   L   ++ +  R        
Sbjct: 13  NWNRIQDEKDLEVWNRLTSNFWLPEKVPLSNDLPAWQT---LDKQQQQLTIRVFTGLTLL 69

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L         +    
Sbjct: 70  DTIQNVIGAPGLMEDALTPHEEAVLSNVSFMEAVHARSYSSIFSTLCNTADVDAAYRWSE 129

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA   L++ +                          V  E   FY+GF   + 
Sbjct: 130 ENEALQNKAKIVLEHYRADDPLKKKI---------------ASVFLESFLFYSGFWLPMY 174

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +          +E QQ +  +L     
Sbjct: 175 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKALENVDDARREELQQFAIELLLALYE 234

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+ Y         VG  A   + ++ + AN+    +G E LF     T NP    +   
Sbjct: 235 NEVVYTEALYAD--VGW-AEEVKTFLHYNANKALMNLGYEALFPAELTTVNPAILAALSP 291

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 292 NADENHDFFSGSGSSYVMGKAVE 314


>gi|126650012|ref|ZP_01722245.1| ribonucleotide-diphosphate [Bacillus sp. B14905]
 gi|126593184|gb|EAZ87146.1| ribonucleotide-diphosphate [Bacillus sp. B14905]
          Length = 322

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 118/305 (38%), Gaps = 21/305 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W P E+ +  D+  WKS      + +   K+        +++  N  +  +
Sbjct: 22  FWDQQWKQIWFPEEIAVSKDIKQWKSF-----EHQDTYKKVFAGLTLLDTVQTNIGMNRV 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             +  + + +  L      EA+H+ ++ YI T+L  +E   ELF   ++   +  KAN  
Sbjct: 77  AAYTDDLQEKAVLTVFDAFEAIHAKSYSYIFTTLCTNEEIDELFEWVKKNEYLQYKANKI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
                ++         ++ D E L       V+ E   FY+GF   L LG    +   AE
Sbjct: 137 ADIYNSI---------EEGDSESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAE 187

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H          +  +      +  Q     +L +    E+ Y  +    
Sbjct: 188 IISLILRDESIHGVAVGFFAQNLYKQFSKEKQESLQLWGYELLLDLYQNEMKYTEDIY-- 245

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
              GL+    + Y+++ AN+    +G E +F   E NP   M+ + +     +FF  +  
Sbjct: 246 AETGLSPE-VKAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKGA 303

Query: 342 EYQQG 346
            Y + 
Sbjct: 304 TYAKA 308


>gi|254976540|ref|ZP_05273012.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-66c26]
 gi|255093925|ref|ZP_05323403.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile CIP 107932]
 gi|255315677|ref|ZP_05357260.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-76w55]
 gi|255518338|ref|ZP_05386014.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-97b34]
 gi|255651455|ref|ZP_05398357.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-37x79]
 gi|260684515|ref|YP_003215800.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
           difficile CD196]
 gi|260688173|ref|YP_003219307.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
           difficile R20291]
 gi|260210678|emb|CBA65434.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile CD196]
 gi|260214190|emb|CBE06438.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile R20291]
          Length = 323

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 125/306 (40%), Gaps = 23/306 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+P E+ +  D+ +W     L++ E+ + K+ LG     ++   NN + ++
Sbjct: 25  FWEQNVKQFWLPEEISVSKDIKVWNE---LSNKEKELYKKVLGGLTLLDTKQGNNGIPSM 81

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
                N + +  L      E +H+ ++  I  +L   L+  ELF      P++  KA+  
Sbjct: 82  MSLTENLQRKAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLV 141

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L   +  ++                   V  V  E   FY+GF   L L    KMV   E
Sbjct: 142 LAQYENTTNQEGL-----------YLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGE 190

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDESLH  +   +  +I      +  K  ++K  ++L+     EI Y +    +
Sbjct: 191 IISLILRDESLHGKYIGLLAQEIYDSFDKMDKKMLEEKMYSILYSLMENEIEYTNVIYRE 250

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340
              GL       ++++ ANR    +G E L+     NP   +   +  + +  +FF T+ 
Sbjct: 251 S--GLEKE-VVNFLKYNANRALENLGFEKLYTVDAINPI--VLNGLSTETKTHDFFSTKG 305

Query: 341 TEYQQG 346
             YQ+G
Sbjct: 306 NGYQKG 311


>gi|257865182|ref|ZP_05644835.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257871507|ref|ZP_05651160.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257874804|ref|ZP_05654457.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC20]
 gi|325571550|ref|ZP_08147050.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           casseliflavus ATCC 12755]
 gi|257799116|gb|EEV28168.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC30]
 gi|257805671|gb|EEV34493.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC10]
 gi|257808970|gb|EEV37790.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
           EC20]
 gi|325156026|gb|EGC68222.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           casseliflavus ATCC 12755]
          Length = 321

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W++   L+  E+  +    
Sbjct: 7   EAINWNEIEDIIDKSTWE---KLTEQFWLDTRIPLSNDLDDWRT---LSPLEKTTVGYVF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ + + +  + + +  P     L    F E+VH+ ++  I ++L       +
Sbjct: 61  GGLTLLDTVQSESGMDQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKAEIAD 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F      P +  KA    +  +  +                       V  E   FY+G
Sbjct: 121 IFEWTNTNPYLQKKAERINEIYKNGTPLEKKI---------------ASVFLETFLFYSG 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E P    ++ +     +
Sbjct: 166 FYTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQQKLKDWMYDL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L+E    E  Y  E      +G      + ++++ AN+    +G +PLF       NP  
Sbjct: 226 LYELYENEERYTEELY--DEIGWT-EEVKTFLRYNANKALMNLGQDPLFPDTANDVNPIV 282

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            M+ +       +FF      Y  G+   +K D
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMKDD 314


>gi|330941350|gb|EGH44202.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 109

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/109 (60%), Positives = 82/109 (75%)

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           QIKIENPHLW  E ++++  M+ + T LEI YA +TMP+G +G+NA   E Y++FIANRR
Sbjct: 1   QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 60

Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
             QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G  L WD
Sbjct: 61  LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 109


>gi|200386806|ref|ZP_03213418.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199603904|gb|EDZ02449.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 319

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/324 (17%), Positives = 117/324 (36%), Gaps = 28/324 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P ++P+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKMPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +  +                         V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
            EI Y        G+V       + ++ + AN+    +G E LF       NP    +  
Sbjct: 232 NEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287

Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
            +  +  +FF    + Y  G  ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311


>gi|126700615|ref|YP_001089512.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
           difficile 630]
 gi|255102106|ref|ZP_05331083.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-63q42]
 gi|255307975|ref|ZP_05352146.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile ATCC 43255]
 gi|115252052|emb|CAJ69888.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
           reductase small subunit) [Clostridium difficile]
          Length = 323

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 125/306 (40%), Gaps = 23/306 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+P E+ +  D+ +W     L++ E+ + K+ LG     ++   NN + ++
Sbjct: 25  FWEQNVKQFWLPEEISVSKDIKVWNE---LSNKEKELYKKVLGGLTLLDTKQGNNGIPSM 81

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
                N + +  L      E +H+ ++  I  +L   L+  ELF      P++  KA+  
Sbjct: 82  MSLTENLQRKAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLV 141

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L   +  ++                   V  V  E   FY+GF   L L    KMV   E
Sbjct: 142 LAQYENTTNQEGL-----------YLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGE 190

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDESLH  +   +  +I      +  +  ++K  ++L+     EI Y +    +
Sbjct: 191 IISLILRDESLHGKYIGLLAQEIYDSFDKMDKEMLEEKMYSILYSLMENEIEYTNVIYRE 250

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340
              GL       ++++ ANR    +G E L+     NP   +   +  + +  +FF T+ 
Sbjct: 251 S--GLEKE-VVNFLKYNANRALENLGFEKLYTVDAINPI--VLNGLSTETKTHDFFSTKG 305

Query: 341 TEYQQG 346
             YQ+G
Sbjct: 306 NGYQKG 311


>gi|325989612|ref|YP_004249311.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma suis
           KI3806]
 gi|323574697|emb|CBZ40353.1| Ribonucleoside-diphosphate reductase beta chain [Mycoplasma suis]
          Length = 330

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 129/312 (41%), Gaps = 24/312 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+  E+P+  D  +W+    LT+ E+ +  + L      ++      +  I
Sbjct: 28  FWDQNVRQFWVDEEIPLSGDKLVWQ--ARLTEKEKDVYVKVLVSLTLLDTHQGAIGMNRI 85

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA 162
              + +   +  L   A  E +H+ ++  I  +L   E   ELF   ++ PS+  K +  
Sbjct: 86  CLAVPDLPTKAVLQFMAMMEQMHAKSYSSIFCTLLSTEQINELFEWIKKEPSLQKKVDIV 145

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           + Y + +            DQE L    V  V  E   FY+GF  +L L     M+   E
Sbjct: 146 VSYYENI-----------KDQESLYMAMVASVFLESFLFYSGFFYMLYLSSQGLMINSGE 194

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-P 281
               I+RDE++H  +  ++ +++         ++ +++  ++L E    EI Y  +   P
Sbjct: 195 IINLIIRDEAIHGLYIGNLASKLFSTFDSEKQEKLKKQVYSLLEELMENEIEYTEKIYSP 254

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFET 338
              VG       Q++++ AN+    + LE  +  TE   NP  + + +    K  +FF T
Sbjct: 255 INLVG----EVIQFLKYNANKALQNLDLEEKYDVTENDINPMIF-NGLNTSTKNHDFFST 309

Query: 339 RVTEYQQGAELK 350
           +   Y +   ++
Sbjct: 310 KGNGYIKTTHVE 321


>gi|169827410|ref|YP_001697568.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
           sphaericus C3-41]
 gi|168991898|gb|ACA39438.1| Ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
           sphaericus C3-41]
          Length = 318

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 118/305 (38%), Gaps = 21/305 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W P E+ +  D+  WKS      + +   K+        +++  N  +  +
Sbjct: 18  FWDQQWKQIWFPEEIAVSKDIQQWKSF-----EHQDTYKKVFAGLTLLDTVQTNIGMNRV 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             +  + + +  L      EA+H+ ++ YI T+L  +E   ELF   ++   +  KAN  
Sbjct: 73  AAYTDDLQEKAVLTVFDAFEAIHAKSYSYIFTTLCTNEEIDELFEWVKKNEYLQYKANKI 132

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
                ++         ++ D E L       V+ E   FY+GF   L LG    +   AE
Sbjct: 133 ADIYNSI---------EEGDAESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAE 183

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H          +  +      +  Q     +L +    E+ Y  +    
Sbjct: 184 IISLILRDESIHGVAVGFFAQNLYKQFSKEKQEALQLWGYELLLDLYQNEMKYTEDIY-- 241

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
              GL+    + Y+++ AN+    +G E +F   E NP   M+ + +     +FF  +  
Sbjct: 242 AETGLSPE-VKAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKGA 299

Query: 342 EYQQG 346
            Y + 
Sbjct: 300 TYAKA 304


>gi|82545243|ref|YP_409190.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
           Sb227]
 gi|81246654|gb|ABB67362.1| ribonucleoside-diphosphate reductase 2, beta chain, frag [Shigella
           boydii Sb227]
 gi|320186462|gb|EFW61190.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
           flexneri CDC 796-83]
 gi|332091953|gb|EGI97031.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           boydii 3594-74]
          Length = 304

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 116/314 (36%), Gaps = 29/314 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L       ++  +   P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPYALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E   +  KA    Q+ +                          V  E   FY+GF  
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E+ Y+ E   +      A   + ++ + AN+    +G EPLF       NP    +
Sbjct: 229 LYDNELQYSDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285

Query: 325 EVIDLKKEKNFFET 338
              +  +  +FF  
Sbjct: 286 LSPNADENHDFFSG 299


>gi|255656920|ref|ZP_05402329.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
           difficile QCD-23m63]
 gi|296452239|ref|ZP_06893946.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           difficile NAP08]
 gi|296877591|ref|ZP_06901622.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           difficile NAP07]
 gi|296258926|gb|EFH05814.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           difficile NAP08]
 gi|296431442|gb|EFH17258.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
           difficile NAP07]
          Length = 323

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 124/306 (40%), Gaps = 23/306 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+P E+ +  D+ +W     L++ E+ + K+ LG     ++   NN + ++
Sbjct: 25  FWEQNVKQFWLPEEISVSKDIKIWNE---LSNKEKELYKKVLGGLTLLDTKQGNNGIPSM 81

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
                N + +  L      E +H+ ++  I  +L  +    ELF      P++  KA+  
Sbjct: 82  MSLTENLQRKAVLSFMGTMEEIHAKSYSSIFMTLLSNSEIDELFEWIETEPTLQRKADLV 141

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L   +  ++                   V  V  E   FY+GF   L L    KMV   E
Sbjct: 142 LAQYENTTNQEGL-----------YLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGE 190

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDESLH  +   +  +I      +  +  ++K  ++L+     EI Y +    +
Sbjct: 191 IISLILRDESLHGKYIGLLAQEIYDSFDKMDKEILEEKMYSILYRLMENEIEYTNIIYRE 250

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340
              GL       ++++ ANR    +G E L+     NP   +   +  + +  +FF T+ 
Sbjct: 251 S--GLEKE-VVNFLKYNANRALENLGFEKLYTVDAINPI--VLNGLSTETKTHDFFSTKG 305

Query: 341 TEYQQG 346
             YQ+G
Sbjct: 306 NGYQKG 311


>gi|325973169|ref|YP_004250233.1| ribonucleoside-diphosphate reductase subunit beta [Mycoplasma suis
           str. Illinois]
 gi|323651771|gb|ADX97853.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma suis
           str. Illinois]
          Length = 330

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 129/312 (41%), Gaps = 24/312 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+  E+P+  D  +W+    LT+ E+ +  + L      ++      +  I
Sbjct: 28  FWDQNVRQFWVDEEIPLSGDKLVWQ--ARLTEKEKDVYVKVLVSLTLLDTHQGAIGMNRI 85

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA 162
              + +   +  L   A  E +H+ ++  I  +L   E   ELF   ++ PS+  K +  
Sbjct: 86  CLAVPDLPTKAVLQFMAMMEQMHAKSYSSIFCTLLSTEQINELFEWIKKEPSLQKKVDIV 145

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           + Y + +            DQE L    V  V  E   FY+GF  +L L     M+   E
Sbjct: 146 VSYYENI-----------KDQESLYMAMVASVFLESFLFYSGFFYMLYLSSQGLMINSGE 194

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-P 281
               I+RDE++H  +  ++ +++         ++ +++  ++L E    EI Y  +   P
Sbjct: 195 IINLIIRDEAIHGLYIGNLASKLFSTFDSEKQEKLKKQVYSLLEELMENEIEYTEKVYSP 254

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFET 338
              VG       Q++++ AN+    + LE  +  TE   NP  + + +    K  +FF T
Sbjct: 255 INLVG----EVIQFLKYNANKALQNLDLEEKYDVTENDINPMIF-NGLNTSTKNHDFFST 309

Query: 339 RVTEYQQGAELK 350
           +   Y +   ++
Sbjct: 310 KGNGYIKTTHVE 321


>gi|9630287|ref|NP_046714.1| hypothetical protein SPBc2p162 [Bacillus phage SPBc2]
 gi|50812253|ref|NP_389886.2| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|75090792|sp|O64174|BNRDF_BPSPC RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|81637506|sp|O30601|YOSP_BACSU RecName: Full=SPBc2 prophage-derived ribonucleoside-diphosphate
           reductase subunit beta; AltName: Full=Ribonucleotide
           reductase small subunit
 gi|2522310|gb|AAB92486.1| YojQ/S [Bacillus subtilis subsp. subtilis str. 168]
 gi|3025640|gb|AAC13135.1| unknown [Bacillus phage SPbeta]
 gi|32468776|emb|CAB13896.2| SPbeta phage ribonucleoside-diphosphate reductase, beta subunit
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 329

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 126/309 (40%), Gaps = 22/309 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   +    +  KA  
Sbjct: 78  AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKKART 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   +T+         K  D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVSVYKTI---------KKNDEISLFKGMVASVFLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +      KE    +  +L E    E+ Y  +   
Sbjct: 189 EIINLIIRDEAIHGVYVGLLAQEIYKKQTPQKQKELYAWALNLLQELYENELEYTEDVYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
           +  VGL AP  ++++++ AN+  + +G +  F+  + NP   +   ++ K +  +FF T+
Sbjct: 249 Q--VGL-APDVKKFIRYNANKALNNLGFDHWFEEEDVNPI--VINGLNTKTKSHDFFSTK 303

Query: 340 VTEYQQGAE 348
              Y++   
Sbjct: 304 GNGYKKATV 312


>gi|296316020|ref|YP_003662484.1| ribonucleotide reductase subunit 2 [Bovine herpesvirus 5]
 gi|40456143|gb|AAR86121.1| UL40 ribonucleotide reductase small subunit [Bovine herpesvirus 5]
          Length = 315

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/320 (20%), Positives = 116/320 (36%), Gaps = 36/320 (11%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W+ TE P+ DD         L+  E    +    F ++++ LV  N
Sbjct: 23  PDIDHLRSLSVANRWLETEFPLADDAKD---VARLSGAELEFYRFLFAFLSAADDLVNVN 79

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155
            +  +    +  +   Y + Q   E VHS  +      +  +  +            P++
Sbjct: 80  -LGNLSELFTQKDILHYYIEQESIEVVHSRVYSAIQLLLFKNDAVARAGYVEDALSDPAV 138

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K +W  +      S +                +V  ++ EG++F + FA I  L   N
Sbjct: 139 RRKVDWLERRVAAAESVAEK--------------YVLMILIEGIFFSSSFAAIAYLRTHN 184

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V   +    I RDE++H      + N     N     +    + R +  EA  +E  +
Sbjct: 185 LFVVTCQTNDLISRDEAVHTTASCCIFN-----NYLGGERPPPDRVRKLFREAVEIEREF 239

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKK 331
                P+G   L+  +   Y+++ A+R    I L PLF      T+ P   M+     +K
Sbjct: 240 IWSRAPRGSHILDVEAISAYVEYSADRLLAAIHLPPLFGTPPPGTDFPLALMT----AEK 295

Query: 332 EKNFFETRVTEYQQGAELKW 351
             NFFE R T Y  G  +  
Sbjct: 296 HTNFFERRSTTY-TGTVIND 314


>gi|257870055|ref|ZP_05649708.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2]
 gi|257804219|gb|EEV33041.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2]
          Length = 322

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 122/333 (36%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N +  +     WE         W+ T +P+ +DL  W++   L+D E+  +    
Sbjct: 7   EAINWNAIEDIIDKSTWE---KLTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
           G     +++ + + +  + + +  P     L    F E+VH+ ++  I ++L       E
Sbjct: 61  GGLTLLDTVQSESGMDQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKAEIDE 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F      P +  KA    +  +  +                       V  E   FY+G
Sbjct: 121 IFEWTNTNPYLQKKAERINEIYKNGTPLEKKI---------------ASVFLETFLFYSG 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E P    +  +     +
Sbjct: 166 FYTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQQRLKDWMYDL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L+E    E  Y  E      +G      + ++++ AN+    +G +PLF       NP  
Sbjct: 226 LYELYENEERYTEELY--DAIGWT-EEVKTFLRYNANKALMNLGQDPLFPDTANDVNPIV 282

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            M+ +       +FF      Y  G    +K D
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGYLLGTVEAMKDD 314


>gi|188533084|ref|YP_001906881.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188028126|emb|CAO95983.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 319

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 120/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W S   L  +E+ +  R        
Sbjct: 10  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWNS---LNAEEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+      P     +   +F EAVH+ ++  I ++L         +    
Sbjct: 67  DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   + AKA   LQ+     +                      V  E   FY+GF   + 
Sbjct: 127 ENAPLQAKAQIILQHYYHDDALKKKI---------------ASVFLESFLFYSGFYLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I++DE++H  +      +   +      +E QQ +  +L E   
Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKSLEKETAPRKEELQQFAIDLLLELYE 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+AY         VG      ++++ + AN+    +G + LF       NP    +   
Sbjct: 232 NEVAYTEALYAG--VGW-QEDVKKFLHYNANKALMNLGYQALFPSYMTDVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK-----WD 352
           +  +  +FF    + Y  G  ++     WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVETEDEDWD 318


>gi|291336894|gb|ADD96423.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
          Length = 147

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/146 (45%), Positives = 99/146 (67%)

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            +L+LGR NK+ G+++Q +Y +RDESLH+NFG  +IN +K + P +WTK+F++++   + 
Sbjct: 1   MLLALGRQNKLPGLSDQIRYTLRDESLHINFGTYLINTLKEQYPTIWTKKFEEETIEHIK 60

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           +A  LEI YAH+ +P+G +GLNA     YM +I NRR   IGL+  F+   NPFPW+SEV
Sbjct: 61  KAVQLEINYAHDVLPRGILGLNADMFVDYMHYIGNRRLEGIGLDYRFESDTNPFPWLSEV 120

Query: 327 IDLKKEKNFFETRVTEYQQGAELKWD 352
           +D     NFFE +V +YQ    L+ D
Sbjct: 121 VDTGAMTNFFERKVKDYQNSGVLEDD 146


>gi|327409820|ref|YP_004347240.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus]
 gi|326784994|gb|AEA07128.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus]
          Length = 319

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 126/311 (40%), Gaps = 24/311 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y     +HW+P EV    D   W+    L+ +E+   K  L FFA  + LV  N+V   
Sbjct: 20  YYQKLKKSHWIPEEVDTSKDAQDWQ---LLSKEEKSFAKLILAFFAQFDGLVVENLVRHF 76

Query: 105 YRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKAN 160
            + +S+   E   + + QA  E +H+ T+  +I  L       +  +      SI   A+
Sbjct: 77  QQEVSSFAKEIEWFYILQAANELIHNETYMNLINVLLPPSKRAKALDAISNYASIRKIAD 136

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           W  ++                      +  + +   EG+ F   FA +     +N++ G+
Sbjct: 137 WVEKWMNPAVPLP--------------ERIIAFAALEGVIFTGAFAAVYYFTISNRLKGL 182

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               ++I RDE+LH  F   + N +  E         Q++   +L  A      +   ++
Sbjct: 183 RTANEWISRDEALHKKFAEVLYNFLVDELKVFERV-SQERCHEILTSAIEAVTDFIKYSL 241

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
               V ++A     YM+   +     +  E ++   EN   +M  +I L+ + NFFE  +
Sbjct: 242 RLDNVNIDADRMLGYMKRAVDDLATGLKYEKVYN-AENTLDYML-LIGLENKGNFFEGVI 299

Query: 341 TEYQQGAELKW 351
           T+Y +G ++  
Sbjct: 300 TDYSKGMDMGD 310


>gi|1710396|sp|P50644|RIR2_EHV4 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|515833|emb|CAA53101.1| ribonucleoside-diphosphate reductase [Equid herpesvirus 4]
          Length = 320

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 117/305 (38%), Gaps = 18/305 (5%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                  L +  N W+ T++P+ DDL        L   ER   +    F ++++ LV  N
Sbjct: 27  PDIEHLRLLSVANRWLDTDLPISDDLKD---VAKLAPAEREFYRFLFAFLSAADDLVNLN 83

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
            +  +    +  +   Y + Q   E  HS  +  I   L  ++      Y          
Sbjct: 84  -LGDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDATARARYVASVVKDVAI 142

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           +  + + Q           K  + + + + ++  ++ EG++F + FA I  L   N  V 
Sbjct: 143 DLKVSWLQA----------KVRECKSVAEKYILMILIEGVFFASSFASIAYLRTHNLFVV 192

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
             +    I RDE++H N    + N                +   +  EA  +E  +    
Sbjct: 193 TCQSNDLISRDEAIHTNASCCIYNNYLGGFEKPAPT----RIYALFSEAVNIECEFLLSH 248

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
            PK    L+  +   Y+++ A+R   +IGL PLF   + P  +    + ++K  NFFE R
Sbjct: 249 APKSSHLLDIEAIICYVRYSADRLLGEIGLSPLFNAPKPPPSFPLAFMTVEKHTNFFERR 308

Query: 340 VTEYQ 344
            T Y 
Sbjct: 309 STAYS 313


>gi|296330954|ref|ZP_06873429.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674472|ref|YP_003866144.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151959|gb|EFG92833.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412716|gb|ADM37835.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 329

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/315 (20%), Positives = 128/315 (40%), Gaps = 24/315 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA  
Sbjct: 78  AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQI 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +         +  D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVGLYKAI---------QKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +       E +  +  +L+E    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELRGFAIDLLNELYENELEYTEDLYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
           +  VGL+    ++++++ AN+    +G +P F+  + NP   +   ++ K +  +FF  +
Sbjct: 249 Q--VGLS-HDVKKFIRYNANKALMNLGFDPYFEEEDINPI--VLNGLNTKTKSHDFFSMK 303

Query: 340 VTEYQQGAE--LKWD 352
              Y++     LK D
Sbjct: 304 GNGYKKATVEPLKDD 318


>gi|238755711|ref|ZP_04617045.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia ruckeri
           ATCC 29473]
 gi|238706078|gb|EEP98461.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia ruckeri
           ATCC 29473]
          Length = 323

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 115/324 (35%), Gaps = 44/324 (13%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +    +N W+P +VP+ +D+  W     LT  E+ +  R        +++        
Sbjct: 25  EVWNRLTSNFWLPEKVPLSNDIPSW---AMLTAQEKQLTIRVFTGLTLLDTIQNTVGAPT 81

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
           + +    P         +F EAVH+ ++  I ++L +     + +    E  ++  KA  
Sbjct: 82  LLQDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENTTLQKKAQI 141

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L +                            V  E   FY+GF   +      K+   A
Sbjct: 142 ILNHYHHDDPLKKKI---------------ASVFLESFLFYSGFYLPMYFSSRAKLTNTA 186

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RDE++H  +      +   +   +  +E +  +  +L +    E+ Y  E   
Sbjct: 187 DLIRLIIRDEAVHGYYIGYKFQKGLEKVDAVRRQEIKNFTFELLQDLYDNEVRYTEELYD 246

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-----------NPFPWMSEVIDLK 330
              VG +    ++++ + AN+    +G E LF   E           +P        +  
Sbjct: 247 G--VGWS-EDVKKFLHYNANKALMNLGYEALFPANEVTVSAAILSALSP--------NAD 295

Query: 331 KEKNFFETRVTEYQ--QGAELKWD 352
           +  +FF    + Y   +    + D
Sbjct: 296 ENHDFFSGSGSSYVIGKAVNTEDD 319


>gi|125745092|ref|YP_001033969.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 2]
 gi|327488446|sp|Q77MS0|RIR2_GAHVM RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|7673151|gb|AAF66775.1|AF147806_39 ribonucleotide reductase small subunit [Gallid herpesvirus 2]
 gi|10180745|gb|AAG14233.1|AF243438_48 UL40 ribonucleotide reductase small subunit-like protein [Gallid
           herpesvirus 2]
 gi|104304005|gb|ABF72280.1| HSV-1 UL40-like protein [Gallid herpesvirus 2]
 gi|148806369|gb|ABR13125.1| UL40 [Gallid herpesvirus 2]
 gi|194346388|gb|ACF49570.1| UL40 [synthetic construct]
 gi|194750382|gb|ACF94859.1| UL40 [Gallid herpesvirus 2]
 gi|237626230|gb|ACR02753.1| UL40 [synthetic construct]
 gi|237626404|gb|ACR02926.1| UL40 [synthetic construct]
          Length = 343

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/316 (19%), Positives = 121/316 (38%), Gaps = 28/316 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W  TE  + DDL      + LT++ER   +    F ++++ LV  N
Sbjct: 51  PDIGHLRALSIMNRWTETEFVISDDLRD---VSMLTEEERYFYRFLFTFLSAADDLVNLN 107

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155
            +  +    S  +   Y   Q   EAVHS  +      +  +  L   E        P+I
Sbjct: 108 -IDNLLGLFSQKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAI 166

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            +K +W  +              +  +   + + ++  ++ EG++F   FA I  L   N
Sbjct: 167 QSKLDWLNK--------------RVIECSSIAEKYILMILIEGIFFSASFAAIAYLRINN 212

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V   +    I RDE++H+     +       N  +  K    + + +  EA  +E A+
Sbjct: 213 LFVVTCQINNLISRDEAIHVEASCCIFK-----NYLMGPKPSIGRVQELFKEAVQIECAF 267

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                P+    L+  +   Y+++ A+R   ++ + P++   +    +   ++      NF
Sbjct: 268 LRTAAPRNSQLLDVEAICSYVRYSADRLLKELDMPPIYNEPKPTADFPLALMTASNNTNF 327

Query: 336 FETRVTEYQQGAELKW 351
           FE R T Y  G+    
Sbjct: 328 FERRNTAYS-GSVSND 342


>gi|51557509|ref|YP_068343.1| ribonucleotide reductase subunit 2 [Suid herpesvirus 1]
 gi|1710400|sp|P50645|RIR2_SUHVK RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|437737|emb|CAA50977.1| ribonucleotide reductase [Suid herpesvirus 1]
 gi|525265|emb|CAA56776.1| ribonucleotid reductase, small subunit [Suid herpesvirus 1]
 gi|40253968|tpg|DAA02163.1| TPA_exp: small subunit of ribonucleotide reductase [Suid
           herpesvirus 1]
 gi|1090510|prf||2019240B ribonucleotide reductase:SUBUNIT=small
          Length = 303

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/316 (19%), Positives = 122/316 (38%), Gaps = 27/316 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W+ T++P+ DD         L++ E    +    F ++++ LV  N
Sbjct: 10  PDMDHLRSLSVANRWLETDLPLGDDAKD---VAALSEPELEFYRFLFAFLSAADDLVNVN 66

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE----GELFNMYREVPSI 155
            + ++    +  +   Y + Q   E VHS  +  I   L   +               +I
Sbjct: 67  -LGSLSELFTQKDILHYYIEQECIEVVHSRVYSAIQLMLFRGDAAARERYVRAALRDEAI 125

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K  W                ++ A+   + + ++  ++ EG++F + FA I  L   N
Sbjct: 126 RRKVEW--------------LDSRVAECASVAEKYLLMILIEGIFFASSFASISYLRTHN 171

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V   +   +I RDE++H +    + N    + P    +  + +   +  EA  +E  +
Sbjct: 172 LFVVTCQSNDFISRDEAIHTSASCCIYNNYLGDAP----RPDEARIHQLFAEAVEIECEF 227

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                P+  + L+ P+   Y+++ A+R    IG  PLF        +   ++  +K  NF
Sbjct: 228 LRARAPRDSLLLDLPAIISYVRYSADRLLQAIGASPLFGAPAPAADFPMALMVAEKHTNF 287

Query: 336 FETRVTEYQQGAELKW 351
           FE R T Y  G  +  
Sbjct: 288 FERRSTNY-TGTVVND 302


>gi|9629745|ref|NP_045237.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 4]
 gi|2605963|gb|AAC59535.1| 20 [Equid herpesvirus 4]
          Length = 320

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 117/305 (38%), Gaps = 18/305 (5%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                  L +  N W+ T++P+ DDL        L   ER   +    F ++++ LV  N
Sbjct: 27  PDIEHLRLLSVANRWLDTDLPISDDLKD---VAKLAPAEREFYRFLFAFLSAADDLVNLN 83

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
            +  +    +  +   Y + Q   E  HS  +  I   L  ++      Y          
Sbjct: 84  -LGDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDATARARYVASVVKDVAI 142

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
           +  + + Q           K  + + + + ++  ++ EG++F + FA I  L   N  V 
Sbjct: 143 DLKVSWLQA----------KVRECKSVAEKYILMILIEGVFFASSFASIAYLRTHNLFVV 192

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
             +    I RDE++H N    + N                +   +  EA  +E  +    
Sbjct: 193 TCQSNDLISRDEAIHTNASCCIYNNYLGGFEKPAPT----RIYALFSEAVNIECEFLLSH 248

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
            PK    L+  +   Y+++ A+R   +IGL PLF   + P  +    + ++K  NFFE R
Sbjct: 249 APKSTHLLDIEAIICYVRYSADRLLGEIGLSPLFNAPKPPPSFPLAFMTVEKHTNFFERR 308

Query: 340 VTEYQ 344
            T Y 
Sbjct: 309 STAYS 313


>gi|315641368|ref|ZP_07896443.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           italicus DSM 15952]
 gi|315482861|gb|EFU73382.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           italicus DSM 15952]
          Length = 321

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 122/327 (37%), Gaps = 30/327 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L++ E+ ++    
Sbjct: 7   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSEPEKQLVGHVF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     ++L + + +  + +    P     L    F E+VH+ ++  I ++L   +   E
Sbjct: 61  GGLTLLDTLQSESGIDQLRKDARTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F      P + AKA    +  +  +                       V  E   FY+G
Sbjct: 121 IFEWTNTNPYLQAKAEKINEIYKHGTPLQKKI---------------ASVFLETFLFYSG 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +            P     E +     +
Sbjct: 166 FYTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFQALPEAEQAELKDWMYGL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L E    E  Y  E    G +G  A   + ++++ AN+    +G +PLF       NP  
Sbjct: 226 LFELYENEENYTDELY--GEIGW-AEEVKTFLRYNANKALMNMGQDPLFPDSANDVNPIV 282

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE 348
            M+ +       +FF      Y  G+ 
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGYLLGSV 308


>gi|50313261|ref|YP_053065.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 1]
 gi|132625|sp|P28847|RIR2_EHV1B RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|42795147|gb|AAS45904.1| small subunit of ribonucleotide reductase [Equid herpesvirus 1]
 gi|49617004|gb|AAT67277.1| ribonucleotide reductase RR2 [Equid herpesvirus 1]
          Length = 321

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/313 (21%), Positives = 118/313 (37%), Gaps = 34/313 (10%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W+ T++P+ DDL        LT  ER   +    F ++++ LV  N
Sbjct: 28  PDIEHLRSLSVANRWLDTDLPISDDLKD---VAKLTPAEREFYRFLFAFLSAADDLVNLN 84

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG----ELFNMYREVPSI 155
            +  +    +  +   Y + Q   E  HS  +  I   L  ++               +I
Sbjct: 85  -LGDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDAAARARYVASIIGDAAI 143

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K  W                 K  +   + + ++  ++ EG++F + FA I  L   N
Sbjct: 144 GRKVAW--------------LQAKVRECGSVAEKYILMILIEGLFFASSFASIAYLRTHN 189

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V   +    I RDE++H      + N         + K   ++   +  EA  +E  +
Sbjct: 190 LFVVTCQSNDLISRDEAIHTRASCCIYNNYL----GGFEKPEPKRIYELFSEAVNIECEF 245

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKK 331
                P+    L+  +   Y+++ A+R   +IGL PLF   +     P  +M+    ++K
Sbjct: 246 LLSHAPQYSHLLDIGAIISYVRYSADRLLGEIGLSPLFNAPKPSPSFPLAFMT----VEK 301

Query: 332 EKNFFETRVTEYQ 344
             NFFE R T Y 
Sbjct: 302 HTNFFERRSTAYS 314


>gi|16078802|ref|NP_389621.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309618|ref|ZP_03591465.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221313941|ref|ZP_03595746.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221318864|ref|ZP_03600158.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221323136|ref|ZP_03604430.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|321315508|ref|YP_004207795.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis BSn5]
 gi|1710395|sp|P50621|RIR2_BACSU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|1154633|emb|CAA92811.1| NrdF [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634123|emb|CAB13623.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|116733911|gb|ABK20014.1| ribonucleotide-diphosphate reductase beta [synthetic construct]
 gi|291484287|dbj|BAI85362.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. natto BEST195]
 gi|320021782|gb|ADV96768.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis BSn5]
          Length = 329

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 64/315 (20%), Positives = 129/315 (40%), Gaps = 24/315 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA  
Sbjct: 78  AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQM 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +         +  D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVGLYKAI---------QKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +       E ++ +  +L++    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
           +  VGL+    ++++++ AN+    +G +P F+  + NP   +   ++ K +  +FF  +
Sbjct: 249 Q--VGLS-HDVKKFIRYNANKALMNLGFDPYFEEEDINPI--VLNGLNTKTKSHDFFSMK 303

Query: 340 VTEYQQGAE--LKWD 352
              Y++     LK D
Sbjct: 304 GNGYKKATVEPLKDD 318


>gi|299537049|ref|ZP_07050352.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
           fusiformis ZC1]
 gi|298727290|gb|EFI67862.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
           fusiformis ZC1]
          Length = 322

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 117/305 (38%), Gaps = 21/305 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W P E+ +  D+  WKS      + +   K+        +++  N  +  +
Sbjct: 22  FWDQQWKQIWFPEEIAVSKDIKQWKSF-----EHQDTYKKVFAGLTLLDTVQTNIGMNRV 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             +  + + +  L      EA+H+ ++ YI T+L  +E   ELF   ++   +  KAN  
Sbjct: 77  AAYTDDLQEKAVLTVFDAFEAIHAKSYSYIFTTLCTNEEIDELFEWVKKNEFLQYKANKI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
                ++         ++ + E L       V+ E   FY+GF   L LG    +   AE
Sbjct: 137 ADIYNSI---------EEGNPESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAE 187

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H          +  +      +E       +L +    E+ Y  +    
Sbjct: 188 IISLILRDESIHGVAVGFFAQNLFKQFSKEKQEELHLWGYELLLDLYQNEMKYTDDIY-- 245

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
              GL+      Y+++ AN+    +G E +F   E NP   M+ + +     +FF  +  
Sbjct: 246 AETGLSPE-VRAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKGA 303

Query: 342 EYQQG 346
            Y + 
Sbjct: 304 TYAKA 308


>gi|292489180|ref|YP_003532067.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia
           amylovora CFBP1430]
 gi|292900297|ref|YP_003539666.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia
           amylovora ATCC 49946]
 gi|291200145|emb|CBJ47271.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
           amylovora ATCC 49946]
 gi|291554614|emb|CBA22274.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
           amylovora CFBP1430]
          Length = 319

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 119/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W S   L+ DE+ +  R        
Sbjct: 10  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWNS---LSADEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+      P     +   +F EAVH+ ++  I ++L         +    
Sbjct: 67  DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   + AKA   LQ+                            V  E   FY+GF   + 
Sbjct: 127 DNAPLQAKAQIILQHYYHNDPLKKKI---------------ASVFLESFLFYSGFYLPVY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I++DE++H  +      +   +      +E QQ +  +L E   
Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPQRKEELQQFAIELLLELYE 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+AY         VG      ++++ + AN+    +G E LF       NP    +   
Sbjct: 232 NELAYTDALYSG--VGW-QEDVKKFLHYNANKALMNLGYEALFPAEMTDVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTEDEDWD 318


>gi|166367085|ref|YP_001659358.1| ribonucleoside-diphosphate reductase beta chain [Microcystis
           aeruginosa NIES-843]
 gi|166089458|dbj|BAG04166.1| ribonucleoside-diphosphate reductase beta chain [Microcystis
           aeruginosa NIES-843]
          Length = 283

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 24/293 (8%)

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               LTD+ER      L +    +S+   NI   +   ++ PE    +  Q  +EA+H+ 
Sbjct: 3   EYGHLTDEERYAYDGILSYLTFLDSVQTCNIP-HLKGSVTAPEISLCMAEQISQEAMHNQ 61

Query: 130 TFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           ++QY+I ++   E   E+++ +R    +  +  +     Q           K   + +  
Sbjct: 62  SYQYLIETIIPSERRGEVYDFWRTDKVLKDRCQFIASLYQQYID-------KQTTESYFI 114

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
            L   Y++ E ++FY GF    +L     M G A+ ++ I RDE  H+     +I +   
Sbjct: 115 ALVADYLL-ESLYFYNGFIFFYNLASRQLMSGSADVFKMINRDELSHVRLYQKLIPEAMA 173

Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
              H       ++   M   A   E  + +  +    +G+   S EQY +++AN R   I
Sbjct: 174 TFSH-----SVEQIYEMFDTAVKHECRWTNHIVGNDILGITEYSTEQYTKYLANIRLKAI 228

Query: 308 GLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
           GLEPL+   KY ++P+  +    D KK    + NFFE  VT Y   + L  WD
Sbjct: 229 GLEPLYREEKYNKSPYNHLERFSDTKKEGHTKANFFEATVTSYVMSSGLTGWD 281


>gi|41387638|gb|AAS01682.1| ribonucleotide reductase small subunit [Gallid herpesvirus 2]
          Length = 343

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 63/316 (19%), Positives = 120/316 (37%), Gaps = 28/316 (8%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W  TE  + DDL      + LT++ER   +    F ++++ LV  N
Sbjct: 51  PDIGHLRALSIMNRWTETEFVISDDLRD---VSMLTEEERYFYRFLFTFLSAADDLVNLN 107

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155
            +  +    S  +   Y   Q   EAVHS  +      +  +  L   E        P+I
Sbjct: 108 -IDNLLGLFSQKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAI 166

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            +K +W  +              +  +   + + ++  ++ EG++F   FA I  L   N
Sbjct: 167 QSKLDWLNK--------------RVIECSSIAEKYILMILIEGIFFSASFAAIAYLRINN 212

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V   +    I RDE++H+     +       N  +  K    + + +  EA  +E A+
Sbjct: 213 LFVVTCQINNLISRDEAIHVEASCCIFK-----NYLMGPKPSIGRVQELFKEAVQIECAF 267

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
                P     L+  +   Y+++ A+R   ++ + P++   +    +   ++      NF
Sbjct: 268 LRTAAPHNSQLLDVEAICSYVRYSADRLLKELDMPPIYNEPKPTADFPLALMTASNNTNF 327

Query: 336 FETRVTEYQQGAELKW 351
           FE R T Y  G+    
Sbjct: 328 FERRNTAYS-GSVSND 342


>gi|94985875|ref|YP_605239.1| ribonucleotide-diphosphate reductase subunit beta [Deinococcus
           geothermalis DSM 11300]
 gi|94556156|gb|ABF46070.1| Ribonucleoside-diphosphate reductase [Deinococcus geothermalis DSM
           11300]
          Length = 319

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 106/305 (34%), Gaps = 25/305 (8%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y+      W   E+P+  D A W+    L+  ER    R      + ++L     +  +
Sbjct: 19  FYIQQQAQLWFSEEIPIASDAADWR---ALSPAERTCYTRVSAGLNAMDTLQGEVGMPLL 75

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
                + + +  L   AF E VH+ ++     +     +E E F      P +  K    
Sbjct: 76  AAGEDDHQRKATLAMFAFMENVHARSYSMANKTFLSASEEREAFEWIEMQPHLQRKITVF 135

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +  +   + +                 +   + E   FY+GF   L L    KM  + E
Sbjct: 136 RRLYEEGDALT---------------RMLASCLLETALFYSGFFYPLYLAGQGKMSHMGE 180

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
            +  I  DE+LH ++   +  +     P       + +   +  E    E AY  E    
Sbjct: 181 VFTLICADEALHGSYVGLLFQERFAALPQGEQAAVRARFEQLAREFYENECAYTDEVY-- 238

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETR-V 340
             VGL A   + ++++  N  C  +GLE LF   E NP              +FF  +  
Sbjct: 239 AEVGL-ASEVKTFVRYNFNICCDNLGLERLFPEEEVNPLVLNGIRATGGTTHDFFSIKGA 297

Query: 341 TEYQQ 345
             Y +
Sbjct: 298 GGYAK 302


>gi|154686152|ref|YP_001421313.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           amyloliquefaciens FZB42]
 gi|154352003|gb|ABS74082.1| NrdF [Bacillus amyloliquefaciens FZB42]
          Length = 329

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 61/309 (19%), Positives = 126/309 (40%), Gaps = 22/309 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA  
Sbjct: 78  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQM 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +         +  D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVGLYKAI---------QKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE++H  +   +  +I  +       E ++ +  +L++    E+ Y  +   
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYD 248

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
           +  VGL+    ++++++ AN+    +G +P F+  + NP   +   ++ K +  +FF  +
Sbjct: 249 Q--VGLS-HDVKKFIRYNANKALMNLGFDPYFEEEDINPI--VLNGLNTKTKSHDFFSMK 303

Query: 340 VTEYQQGAE 348
              Y++   
Sbjct: 304 GNGYKKATV 312


>gi|304398691|ref|ZP_07380563.1| Ribonucleoside-diphosphate reductase [Pantoea sp. aB]
 gi|304353902|gb|EFM18277.1| Ribonucleoside-diphosphate reductase [Pantoea sp. aB]
          Length = 326

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 115/323 (35%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +DL  W++   L   ++ +  R        
Sbjct: 17  NWNRIQDEKDLEVWNRLTSNFWLPEKVPLSNDLPAWQT---LDKQQQQLTIRVFTGLTLL 73

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 74  DTIQNVIGAPGLMDDAITPHEEAVLSNISFMEAVHARSYSSIFSTLCNTQDVDAAYQWSE 133

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E   +  KA   L++ +                          V  E   FY+GF   + 
Sbjct: 134 ENVPLQNKARIILEHYRANDPLKKKI---------------ASVFLESFLFYSGFWLPMY 178

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      Q       L  +E QQ +  +L     
Sbjct: 179 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQALATADDLRREELQQFAYDLLLALYE 238

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+AY         VG      + ++ + AN+    +G E LF       NP    +   
Sbjct: 239 NEVAYTEALYAD--VGW-VEEVKTFLHYNANKALMNLGYEALFPAELTAVNPAILSALSP 295

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 296 NADENHDFFSGSGSSYVMGKAVE 318


>gi|297745764|emb|CBI15820.3| unnamed protein product [Vitis vinifera]
          Length = 269

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
              +  + +   EG++F   F  I  L +   M G+    + I R E LH +F   + + 
Sbjct: 97  LFAERLIAFACVEGIFFSGSFCAIFWLKKKGLMPGLTFSNELISRYEGLHCDFACLLYSL 156

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
           ++ + P        QK   ++HEA  +E  +  E +P   +G+ A     Y++F+ +R  
Sbjct: 157 LQKQLPW-------QKVHHIVHEAMEIETQFICEALPCALIGMKATLMSHYIKFVVDRLL 209

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             +G E  +   ENPF WM E I L+   NFF+ R+ +YQ+ + + 
Sbjct: 210 VALGYERKYNV-ENPFDWM-EFIFLQGNANFFQRRMGDYQKASIMS 253


>gi|282599256|ref|YP_003358568.1| NrdB ribonucleotide reductase subunit beta [Shigella phage
           phiSboM-AG3]
 gi|226973562|gb|ACO94315.1| NrdB ribonucleotide reductase subunit beta [Shigella phage
           phiSboM-AG3]
          Length = 367

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 70/303 (23%), Positives = 122/303 (40%), Gaps = 18/303 (5%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
            +  + Y    +  W P EV +  D A + +   LT  E+ + + NL      +S+    
Sbjct: 37  PFVQKWYEKGLSQFWRPEEVDITKDKADYAT---LTPAEKRIYESNLKRQTMLDSIQGAA 93

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
              A     S PE +  +L    +EA+HS ++ +I+ +   D G +F+   +V  I   A
Sbjct: 94  PFEAFGPWASTPEMQFAVLEWTRQEAIHSLSYTHILRNTVNDPGIVFDHVLDVAEIVDCA 153

Query: 160 NWALQYTQTLSSPS---------FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +    +   +   S               +A + F + LF      EG+ FY  FA   +
Sbjct: 154 HQISTHYDDMVRYSGMRMAGRAFTREDIMNAKRAFWRALFAAN-TLEGIRFYVSFACSWA 212

Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL--WTKEFQQKSRTMLHE 267
             +   KM G A+  + I RDE  HL     ++N++   +P      +E + +   M  +
Sbjct: 213 FTQFQKKMEGNAKIIRQIARDEQDHLILTQTLLNRLPGMDPDFEIIREELRGEMTQMFLD 272

Query: 268 ATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSE 325
               E  +A      G  +GLNA      + ++   R   IG   P     E P PW++E
Sbjct: 273 VGNQEKQWADYLFQDGSMLGLNAKILHHMVDWLLTHRMGAIGHPYPGEPRKECPVPWINE 332

Query: 326 VID 328
            ++
Sbjct: 333 WLN 335


>gi|327440528|dbj|BAK16893.1| ribonucleotide reductase, beta subunit [Solibacillus silvestris
           StLB046]
          Length = 320

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 118/305 (38%), Gaps = 21/305 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W P E+ +  D+  WK       + +   K+  G     +++  N  +  I
Sbjct: 22  FWDQQWKQIWFPEEIAVSKDVKQWKEF-----EHQDTYKKVFGGLTLLDTVQTNIGMNEI 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
            ++  + + +  L      EA+H+ ++ YI T+L  +    E+F   ++   +  KAN  
Sbjct: 77  AKYTPDFQEKAVLTVFGSFEAIHAKSYSYIFTTLCTNTEIDEVFEWVQKNEFLQYKANRI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +           T  K+ D E L       V+ E   FY+GF   L LG    +   AE
Sbjct: 137 GEVY---------TAIKEDDPESLWKAMFASVMLESFLFYSGFFYPLYLGGQGVLRNSAE 187

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDES+H          I         +E        L +    E+ Y  +    
Sbjct: 188 VISLILRDESIHGVAVGFFAQNIFKTFTEEKQQELTLWGYEYLLDLYQNEMKYTDDLY-- 245

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
              GL+    ++Y+++ AN+    +GL+ +F   E NP   M+ + +     +FF  + +
Sbjct: 246 AETGLSPE-VKKYVRYNANKALMNLGLDTMFPDEEVNPVV-MNGISNTGSTYDFFSQKGS 303

Query: 342 EYQQG 346
            Y   
Sbjct: 304 TYAVA 308


>gi|328912184|gb|AEB63780.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
           amyloliquefaciens LL3]
          Length = 305

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 122/308 (39%), Gaps = 20/308 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L   E+    + L      ++   N  +  +
Sbjct: 2   FYNQNVKQFWLPEEIALNGDLLTWK---YLGTKEQDTYMKVLAGLTLLDTEQGNTGMPIV 58

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   ++   +  KA+ 
Sbjct: 59  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKQNKYLQKKAHT 118

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +         K  D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 119 VVGLYRAI---------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMNSG 169

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E    I+RDE+LH  +   +  +I  +   +  KE  + +  +L +    E+ Y  +   
Sbjct: 170 EIVNLIIRDEALHGVYTGLLAQEIYSKQTEIKKKELYKWTIDLLLDLYENELDYTTDLY- 228

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
              VGL     ++++++ AN+  + +G +  F   E NP   ++ +    K  +FF  + 
Sbjct: 229 -DPVGLT-HDVKKFIRYNANKALNNLGFDHYFHEEEINPVV-LNGLSTKTKSMDFFSQKG 285

Query: 341 TEYQQGAE 348
             Y++   
Sbjct: 286 NSYRKATA 293


>gi|217071966|gb|ACJ84343.1| unknown [Medicago truncatula]
          Length = 206

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 9/168 (5%)

Query: 7   LSPIQAGEK---RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +  ++ G     R    ++ +L  ++    + P++Y   WE Y  A  + W   EV +  
Sbjct: 1   MGSLENGTPKKIREEETEEPILMKQTQRFCMFPVRYKQLWEMYKKAEASFWTAEEVDLSY 60

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D+  W +   L+D E+  I   L FFA+S+ +V  N+       +  PE R +   Q   
Sbjct: 61  DVQHWAT---LSDSEKHFISHVLAFFATSDGIVLENLAARFLNDVQIPEARAFYGFQIAI 117

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168
           E +HS  +  ++ +   D  E   LFN    +P +  KA WAL +  +
Sbjct: 118 ENIHSEMYSLLLETYIKDSREKHKLFNAIENLPCVARKAEWALSWINS 165


>gi|270339459|ref|YP_003331539.1| ribonucleotide reductase subunit 2 [Felid herpesvirus 1]
 gi|254940175|gb|ACT88318.1| ribonucleotide reductase subunit 2 [Felid herpesvirus 1]
          Length = 331

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 117/310 (37%), Gaps = 35/310 (11%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+ T++P+ DD+        L++ E    +    F ++++ LV  N +  +    +
Sbjct: 48  IANRWLETDLPIGDDIKD---VTTLSESELDFYRFLFTFLSAADDLVNLN-LGNLSELFT 103

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMYREVPSITAKANWALQY 165
             +   Y + Q   E VHS  +  I   L   + E      +     P +  K  W    
Sbjct: 104 QKDILHYYIEQECIEVVHSRVYSAIQLLLFKCDAEARTAYVDSMITKPELARKVEW---- 159

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
                       T+  + E + + ++  ++ EG++F   FA I  L   N  +   +   
Sbjct: 160 ----------LRTRIGECESIAEKYILMILIEGIFFVASFAAIAYLRTHNIFIVTCQTND 209

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I RDE++H      + N           K   ++  ++  EA  LE  +     P+   
Sbjct: 210 LISRDEAIHTTASCCIYNNYL----PAQIKPSTERIHSLFREAVELECEFISTCAPRCSN 265

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNFFETRVT 341
            LN      Y+++ A+R    I + P+F       + P  +M     ++K  NFFE   T
Sbjct: 266 LLNVADICNYVRYSADRLLGIIKVAPIFNVPPPHPDFPLAFMV----IEKHTNFFERHST 321

Query: 342 EYQQGAELKW 351
            Y  G  +  
Sbjct: 322 TYS-GTVIND 330


>gi|307107666|gb|EFN55908.1| hypothetical protein CHLNCDRAFT_57791 [Chlorella variabilis]
          Length = 849

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 116/330 (35%), Gaps = 69/330 (20%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP-----------------------TE 58
           K +L+   D   + PLK    W +Y  A  +   P                        +
Sbjct: 557 KPLLDENPDRYCMFPLKEDRVWSQYKKAEAS--RPSGQAPNDPLCMAHTTFWTTFWTAED 614

Query: 59  VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118
           V    D   W+  + L   ER  +   L + A+S+ L+ +N+V      +   E R +  
Sbjct: 615 VDFSSDARDWQ--DRLAPGERSFLSSVLAYLAASDRLIQHNVVARFMIDVELAEARAFYA 672

Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGE----LFNMYREVPSITAKANWALQYTQTLSSPSF 174
            Q F++ VH+     I+ +L   + E    +      +P+  AKA W  ++    ++ + 
Sbjct: 673 FQLFKKNVHTEMVSAILAALFAGKEEQLAAVLRTVLALPAFQAKAAWVRKWINRQATAAA 732

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                   +  L                                        I RDE +H
Sbjct: 733 ALPPLLLPRGLLPG-------------------------------TGHATDLISRDEGVH 761

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
           +     + + ++ +            ++ ++ EA   E A+    +P    GL A + E+
Sbjct: 762 VESAGVMYSLLRSKLTDSQ-------AQGIVGEAVEAERAFVCGQLPLEATGLEAGAMEE 814

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           Y+Q++ +R    +G  PL++   NP PW+ 
Sbjct: 815 YLQYVGDRLLGALGHAPLYRVAANPLPWLE 844


>gi|51247866|pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase
           R2f-2 Subunit From Mycobacterium Tuberculosis
 gi|51247867|pdb|1UZR|B Chain B, Crystal Structure Of The Class Ib Ribonucleotide Reductase
           R2f-2 Subunit From Mycobacterium Tuberculosis
 gi|51247868|pdb|1UZR|C Chain C, Crystal Structure Of The Class Ib Ribonucleotide Reductase
           R2f-2 Subunit From Mycobacterium Tuberculosis
          Length = 296

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 112/295 (37%), Gaps = 29/295 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+       N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 15  NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++      +++      P     L   AF E+VH+ ++  I ++L       + F 
Sbjct: 69  TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   LQ  +                       V   + E   FY+GF  
Sbjct: 129 WSEENRNLQRKAEIVLQSYRGDE---------------PLKRKVASTLLESFLFYSGFYL 173

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +      +       +   E +  +  +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFE 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
               E+ Y  +      VGL     ++++++ AN+    +G E LF   E   NP
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNP 285


>gi|3183695|emb|CAA07027.1| ribonucleotide reductase small subunit [Felid herpesvirus 1]
          Length = 331

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 116/310 (37%), Gaps = 35/310 (11%)

Query: 50  CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
             N W+ T++P+ DD+        L++ E    +    F ++++ LV  N +  +    +
Sbjct: 48  IANRWLETDLPIGDDIKD---ITTLSESELDFYRFLFTFLSAADDLVNLN-LGNLSELFT 103

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMYREVPSITAKANWALQY 165
             +   Y + Q   E VHS  +  I   L   + E      +     P +  K  W    
Sbjct: 104 QKDILHYYIEQECIEVVHSRVYSAIQLLLFKCDAEARTAYVDSMITKPELARKVEW---- 159

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
                       T+  + E + + ++  ++ EG++F   FA I  L   N  +   +   
Sbjct: 160 ----------LRTRIGECESIAEKYILMILIEGIFFVASFAAIAYLRTHNIFIVTCQTND 209

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I RDE++H      + N           K   ++  ++  EA  LE  +     P+   
Sbjct: 210 LISRDEAIHTTASCCIYNNYL----PAQIKPSTERIHSLFREAVELECEFISTCAPRCSN 265

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFETRVT 341
            LN      Y+++ A+R    I + P+F         P  +M     ++K  NFFE   T
Sbjct: 266 LLNVADICNYVRYSADRLLGIIKVAPIFNVPPPHPNFPLAFMV----IEKHTNFFEKHST 321

Query: 342 EYQQGAELKW 351
            Y  G  +  
Sbjct: 322 TYS-GTVIND 330


>gi|326804582|ref|YP_004327453.1| Ribonucleotide-diphosphate reductase beta subunit [Salmonella phage
           Vi01]
 gi|301795232|emb|CBW37950.1| Ribonucleotide-diphosphate reductase beta subunit [Salmonella phage
           Vi01]
          Length = 367

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 126/305 (41%), Gaps = 22/305 (7%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
            +  + Y    +  W P EV +  D A + +   L+  E+ +   NL      +S+    
Sbjct: 37  PFVQKWYEKGLSQFWRPEEVDVTKDKADFAT---LSAAEQHIYFSNLKRQTMLDSIQGAA 93

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
              A     S PE +  +L    +EA+HS ++ +I+ +   D G +F+   +V  I   A
Sbjct: 94  PFEAFGPWASTPEAQFAILEWTRQEAIHSLSYTHILRNTVNDPGIVFDHVLDVQEIVDCA 153

Query: 160 NWALQYTQTLSSPS---------FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
                Y   +   S               +A + F + LF    + EG+ FY  FA   +
Sbjct: 154 GQISVYYDDMVRYSGMRMAGRAFTREDIMNAKRAFWRALFAANSL-EGVRFYVSFACSWA 212

Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL--WTKEFQQKSRTMLHE 267
             +  NKM G A+  + I RDE  HL      +N++ + +P      +E + +   M  +
Sbjct: 213 FMQFLNKMEGNAKIIRQIARDEQDHLILTQTFLNRLPLLDPDFGIIREELRGEMTQMYVD 272

Query: 268 ATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWM 323
               E  +A+     G  +GLNA    Q + ++A  R   IG    +      +NP PW+
Sbjct: 273 VVNQEKEWANYLFKDGSMLGLNANILHQMVDWLATHRMGAIGHP--YPGQARKDNPVPWI 330

Query: 324 SEVID 328
           +E +D
Sbjct: 331 NEWLD 335


>gi|254362523|ref|ZP_04978626.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica PHL213]
 gi|153094123|gb|EDN75022.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
           haemolytica PHL213]
          Length = 293

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 19/296 (6%)

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           + TE     D+  +++   + D ER ++ R +   +  E  V          +   PE  
Sbjct: 1   LHTEFNFTGDIQDYRTT--INDHERHVLTRAMLAISQVEVNVKRFWGELYC-YFPKPEMD 57

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
                 A  E  H   + +++  LGL+  E+F+   E+  +  +  +   + +       
Sbjct: 58  DVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIHEIEPLMNRIRYMESFMKD------ 109

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESL 233
                    EF+  L +F +  E +  +  F  ++S  +  N   GI+   +   ++E +
Sbjct: 110 ---KDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMSFNKHKNLFKGISNAVEATSKEEEI 166

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSC 292
           H  FGI +   ++ E+  L+T EF +  +T+ ++A   E         +G +  +   + 
Sbjct: 167 HGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAFEAERGILDWIFEEGDLSFITKATV 226

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQ 345
           E Y++   N     +GLEP             W    I   KE +FF  R T+Y +
Sbjct: 227 ENYIKNRYNNSLSILGLEPPHDIDPELLKETEWFDIEILSTKETDFFNKRSTDYSK 282


>gi|326800312|ref|YP_004318131.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
 gi|326551076|gb|ADZ79461.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
          Length = 327

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 132/310 (42%), Gaps = 21/310 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE     D+ +WK    LT + +   K+ LG     ++L ++  +  I
Sbjct: 20  FWEQNIRQFWIDTEYIPSKDIDVWK---KLTPEMQETYKKALGGLTLLDTLQSHTGMPKI 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+   + +  L      EA+H+ ++  I T++       ELF   ++   +  KA   
Sbjct: 77  LDHIDGLQSKAVLSYMCMMEAIHAKSYSTIFTTVASTPEINELFEWVQDNKYLQFKAATI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            QY ++L     +                  V+ E   FY+GF   L L    +MV  A+
Sbjct: 137 DQYYRSLDKKKVSNEEL-------YMSLAASVLLESFLFYSGFFIPLWLAGQGQMVASAD 189

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+ DES+H  F   +   I  +  +   +E ++K   +L      E+ Y  E    
Sbjct: 190 IIKKIVADESIHGVFVGLLAQDIFRKLSNQ--EEVKKKVVDLLMLLYENELKYTEEIYTD 247

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETRV 340
             VGL A   ++Y+++ AN+    +G E LF+  E NP   +   ++L+  + +FF  + 
Sbjct: 248 --VGLTAE-VKEYVRYNANKALMNLGFEELFEVKEVNPI--VLNGLNLETTQHDFFSKKS 302

Query: 341 TEYQQGAELK 350
           T Y++  ++ 
Sbjct: 303 TNYEKATQIS 312


>gi|319938784|ref|ZP_08013148.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus
           1_2_62CV]
 gi|319811834|gb|EFW08100.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus
           1_2_62CV]
          Length = 319

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 115/303 (37%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+ +E+ ++ +  G     +++ + + V AI 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSPEEKDLVGKVFGGLTLLDTMQSQSGVEAIR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
             +  P     L    F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  GDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFEWTNTNPYLQKKAEIIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     ++                      V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGNALEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    + F++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQETFREWMYDLLYTLYENEEGYTETLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF  T    NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDTADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|227537625|ref|ZP_03967674.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|300771015|ref|ZP_07080892.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|227242511|gb|EEI92526.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|300762288|gb|EFK59107.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 328

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/308 (22%), Positives = 135/308 (43%), Gaps = 19/308 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE     D+  WK   GL+ D +   K+ LG     ++L ++  +  I
Sbjct: 21  FWEQNIKQFWIDTEYIPSKDIDSWK---GLSWDMKECYKKALGGLTLLDTLQSHTGMPKI 77

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+ + + +  L      EA+H+ ++  I T++       ++F    +   +  KA   
Sbjct: 78  IDHIDSLQNKAVLSYMCMMEAIHAKSYSTIFTTVSTTNEINDVFGWVEQNKHLQFKAQTI 137

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +Y +++         +D   E L       V+ E   FY+GF   L L    +MV  A+
Sbjct: 138 DKYYRSIDK-------EDPTDEELFMALGASVLLESFLFYSGFFLPLWLCGQGQMVASAD 190

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+ DES+H  F   +   I    P+   +E + +  T+L+E    E+ Y  E    
Sbjct: 191 IIKKIIADESIHGVFVGLIAQDIFRRIPNK--EEVKARFLTLLNELYENELKYTEEIY-- 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
             VGL A   ++Y+++  N+    +G +P+F+  + NP   ++ +     + +FF  + T
Sbjct: 247 TVVGLTAE-VKEYVRYNGNKALMNLGFDPIFEVKQVNPIV-LNGLNTETTQHDFFSKKST 304

Query: 342 EYQQGAEL 349
            Y++  E+
Sbjct: 305 NYEKATEI 312


>gi|312173339|emb|CBX81594.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
           amylovora ATCC BAA-2158]
          Length = 319

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 119/330 (36%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W S   ++ DE+ +  R        
Sbjct: 10  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWNS---ISADEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+      P     +   +F EAVH+ ++  I ++L         +    
Sbjct: 67  DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   + AKA   LQ+                            V  E   FY+GF   + 
Sbjct: 127 DNAPLQAKAQIILQHYYHNDPLKKKI---------------ASVFLESFLFYSGFYLPVY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I++DE++H  +      +   +      +E QQ +  +L E   
Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPQRKEELQQFAIELLLELYE 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+AY         VG      ++++ + AN+    +G E LF       NP    +   
Sbjct: 232 NELAYTDALYSG--VGW-QEDVKKFLHYNANKALMNLGYEALFPAEMTDVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTEDEDWD 318


>gi|251788642|ref|YP_003003363.1| Ribonucleoside-diphosphate reductase [Dickeya zeae Ech1591]
 gi|247537263|gb|ACT05884.1| Ribonucleoside-diphosphate reductase [Dickeya zeae Ech1591]
          Length = 320

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 111/313 (35%), Gaps = 28/313 (8%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +     N W+P ++ + +D+  W     LTD ER +  R        ++L       A
Sbjct: 22  EVWNRLTANFWLPEKIALSNDMPSWAQ---LTDAERQLTLRVFTGLTLLDTLQNTQGAPA 78

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANW 161
           +      P     L    F EAVH+ ++  I ++L L       ++       + +KA  
Sbjct: 79  LMADALTPHEEAVLSNIGFMEAVHARSYSAIFSTLCLTNEVDCAYHWSEHNKPLQSKAAL 138

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L                    +      +  V  E   FY+GF   +      ++   A
Sbjct: 139 ILSLY---------------RHDQPLKKKIASVFLESFLFYSGFYLPMYWASRGRLTNTA 183

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RDE++H  +      Q          ++ Q  +  +L      E+ Y HE   
Sbjct: 184 DLIRLIIRDEAVHGYYIGYKYQQGLKRLSTPEQRDLQLFAYELLQTLYDNEVDYTHELYD 243

Query: 282 -KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFE 337
             G+ G       +++ + AN+    +G E LF       NP    +     ++  +FF 
Sbjct: 244 SVGWSG----DVIKFLHYNANKALMNLGYEALFPADMTDVNPAILAALSPGAEENHDFFS 299

Query: 338 TRVTEYQQGAELK 350
              + Y  G  ++
Sbjct: 300 GAGSSYVIGKAVE 312


>gi|320539491|ref|ZP_08039160.1| putative truncated ribonucleoside-diphosphate reductase 2, beta
           subunit, ferritin-like protein [Serratia symbiotica str.
           Tucson]
 gi|320030616|gb|EFW12626.1| putative truncated ribonucleoside-diphosphate reductase 2, beta
           subunit, ferritin-like protein [Serratia symbiotica str.
           Tucson]
          Length = 309

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 104/287 (36%), Gaps = 26/287 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P +VP+ +D+  W +   LT  E+ +  R     
Sbjct: 14  NWNLIEDDKDLEVWN---RLTANFWLPEKVPLSNDIPSWAT---LTAKEQQLTLRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++       A+      P         +F EAVH+ ++  I ++L       + + 
Sbjct: 68  TLLDTIQNTVGAPALMADALTPHEEAVYSNISFMEAVHARSYSSIFSTLCQTSDVDDAYR 127

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
             +E  ++  KAN  L +                       + V  V  E   FY+GF  
Sbjct: 128 WSQENHALQKKANLILTHYHADD---------------PLLMKVASVFLESFLFYSGFYL 172

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A   + I+R E++H  +      +       +  ++ +  +  +LH+
Sbjct: 173 PMYWSSRAKLTNTAHLIRLIIRYEAVHGYYIGYKFQKGLERVDVIRRQQVKNVAFDLLHD 232

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
               E+ Y  +      VG      + ++ + AN+    +G E LF 
Sbjct: 233 LYDNEVCYTQDLYDG--VGWT-EDVKTFLHYNANKALMNLGYEALFP 276


>gi|251782830|ref|YP_002997133.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391460|dbj|BAH81919.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 319

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 124/333 (37%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+D E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSDIEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ + + V AI + +  P     L    F E+VH+ ++  I ++L   +   E
Sbjct: 60  GGLTLLDTMQSESGVEAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA    +  +   +                         E   FY+G
Sbjct: 120 IFEWTNNNEFLQKKAQIINEIYEHGDALQKKV---------------ASTYLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E P    + F++    +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETFREWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 225 LYQLYENEENYTKSLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            M+ +       +FF      Y  G+   +  D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313


>gi|323127635|gb|ADX24932.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 319

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 124/333 (37%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+D E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSDIEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ + + V AI + +  P     L    F E+VH+ ++  I ++L   +   E
Sbjct: 60  GGLTLLDTMQSESGVEAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA    +  +   +                         E   FY+G
Sbjct: 120 IFEWTNNNEFLQKKAQIINEIYEHGDALQKKV---------------ASTYLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E P    + F++    +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETFREWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 225 LYQLYENEEDYTKSLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            M+ +       +FF      Y  G+   +  D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313


>gi|9629834|ref|NP_045318.1| ribonucleotide reductase subunit 2 [Bovine herpesvirus 1]
 gi|266916|sp|Q01319|RIR2_BHV1C RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|330772|gb|AAA46063.1| ribonucleotide reductase small subunit [Bovine herpesvirus 1]
 gi|995642|emb|CAA90928.1| UL40 [Bovine herpesvirus 1]
 gi|1149578|emb|CAA88899.1| UL40 [Bovine herpesvirus 1]
 gi|2653307|emb|CAA06093.1| ribonucleotide reductase small subunit [Bovine herpesvirus type
           1.1]
          Length = 314

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 114/320 (35%), Gaps = 37/320 (11%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W+ TE P+ DD         L+  E    +    F ++++ LV  N
Sbjct: 23  PDLDHLRSLSVANRWLETEFPLADDAKD---VARLSGAELEFYRFLFAFLSAADDLVNVN 79

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155
            +  +    +  +   Y + Q   E VHS  +      +  +  +            P++
Sbjct: 80  -LGDLSELFTQKDILHYYIEQESIEVVHSRVYSAIQLLLFRNDAVARAGYVEGALGDPAV 138

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             K +W  +      S +                +V  ++ EG++F + FA I  L   N
Sbjct: 139 RRKVDWLERRVAAAESVAEK--------------YVLMILIEGIFFSSSFAAIAYLRTHN 184

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V   +    I RDE++H      +      +N     +    +   +  EA  L  A 
Sbjct: 185 LFVVTCQTNDLISRDEAVHTAASCCIF-----DNYLGGERPPPARIYELFREAWKL-SAS 238

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKK 331
                P+G   L+  +   Y+++ A+R    I L PLF      T+ P   M+     +K
Sbjct: 239 LFGCAPRGSHILDVEAISAYVEYSADRLLAAIQLPPLFGTPPPGTDFPLALMT----AEK 294

Query: 332 EKNFFETRVTEYQQGAELKW 351
             NFFE R T Y  G  +  
Sbjct: 295 HTNFFERRSTNY-TGTVIND 313


>gi|299779174|ref|YP_003734368.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           IME08]
 gi|298105903|gb|ADI55547.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           IME08]
          Length = 389

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 140/356 (39%), Gaps = 32/356 (8%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPT 57
           + N   +S +      V+V  + M            +   ++    E      +  W P 
Sbjct: 5   LTNENNMSTVFN-TTPVDVLVEPMFFGSGLGIARYDIQ--RHKVFEELCEKQLSFFWRPE 61

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           EV +  D A +   N L   ++ +   NL + +  +S+       A+   +S+P    ++
Sbjct: 62  EVNLMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQGRAPSAALQALISDPSLDTWV 118

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS---- 173
               F E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +    
Sbjct: 119 ATWTFSETIHSRSYTHIMRNLYTDPSKVFDEILLDDAIMKRAESIGRYYDDVIDKTRLYQ 178

Query: 174 --------FTTGTKDADQEFLQDL---FVFYVVFEGMWFYTGFAQILSLGRAN-KMVGIA 221
                   F+ G K A  E ++ L          E + FY  FA   +  +    M G A
Sbjct: 179 NALEEYHEFSEGVKQAKYELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIMEGNA 238

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAH 277
           +  ++I RDE LHL     +I Q+++           +E +Q++  +  E    E  +A 
Sbjct: 239 KIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEKEWAT 298

Query: 278 ETMPKGF-VGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
                G   GLN  +   ++ ++   R  Q GL  P+    T +P+PW+ E ++  
Sbjct: 299 HLFKDGTCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDAPTRHPYPWIREYLNSD 354


>gi|322412098|gb|EFY03006.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 319

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 124/333 (37%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+D E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSDLEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ + + V AI + +  P     L    F E+VH+ ++  I ++L   +   E
Sbjct: 60  GGLTLLDTMQSESGVEAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA    +  +   +                         E   FY+G
Sbjct: 120 IFEWTNNNKFLQKKAQIINEIYEHGDALQKKV---------------ASTYLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E P    + F++    +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETFREWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 225 LYQLYENEEDYTKTLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            M+ +       +FF      Y  G+   +  D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313


>gi|284009251|emb|CBA76360.1| ribonucleoside-diphosphate reductase beta chain [Arsenophonus
           nasoniae]
          Length = 321

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/322 (18%), Positives = 119/322 (36%), Gaps = 38/322 (11%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +     N W+P ++P+ +D+  W +   LT +E+ +  R        
Sbjct: 12  NWNRIEDDKDLEVWNKLTTNFWLPEKIPLSNDIPTWNT---LTKEEKKLTIRVFTGLTLL 68

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++  N    A+      P     +   +F EAVH+ ++  I ++L L     + +    
Sbjct: 69  DTIQNNVGAPALMTDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCLTTDVDDAYQWSE 128

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA+  L++                         +  V  E   FY+GF   + 
Sbjct: 129 ENSALQKKAHLILEHY---------------CNTHPLKKKIASVFLESFLFYSGFYLPMY 173

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +  I+       E +  +  +L     
Sbjct: 174 WSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLIKYSDKEKDEIKDFAYLLLLNLYE 233

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI--- 327
            EI Y+        VG      ++++ + AN+    +G E LF  T      M++V    
Sbjct: 234 NEIKYSESLY--DEVGWT-EDVKKFLHYNANKALMNLGYESLFPET------MTDVSPAI 284

Query: 328 ------DLKKEKNFFETRVTEY 343
                 +  +  +FF    + Y
Sbjct: 285 LSALSPNANENHDFFSGSGSSY 306


>gi|213966196|ref|ZP_03394381.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           amycolatum SK46]
 gi|213951131|gb|EEB62528.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           amycolatum SK46]
          Length = 334

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 117/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +DLA W+    LTD ER +  +     
Sbjct: 25  NWNRVQDDKDLEVWN---RLTANFWLPEKVPLSNDLADWR---RLTDLERELTMKVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ A+   ++  +              AF +AVH+ ++             +F+  
Sbjct: 79  TMLDTVQASVGEISQIQDARTEHEEAVYTNIAFMQAVHAKSYS-----------SVFSTL 127

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
              P I A   WA+  T  +         K    +          +      Y GF   L
Sbjct: 128 SNTPDIDAAYQWAV--TNDILQARSKAVLKHYYGDVPLKRKAAATLLSSFSLYAGFYLPL 185

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  +   A+  + I+RD+++H  +      +          ++ +     +L E  
Sbjct: 186 HFASRGILTNTADMVRLILRDKAVHGYYSGYKFQRGVETYDTATQRQMKAFVFELLDELY 245

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
            LE+ Y+        +GL       ++++ AN+    +G    F + E  F    E++  
Sbjct: 246 QLELRYSEALY--QPLGL-YDDVANFIRYNANKALMNLGYPQRFNHDETAFK--PEILAA 300

Query: 330 -----KKEKNFFETRVTEYQQG-----AELKWD 352
                 +  +FF    + Y  G     A+  WD
Sbjct: 301 LTPGSDENHDFFSGSGSAYVIGKAEDTADEDWD 333


>gi|304445906|pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase
           From Corynebacterium Ammoniagenes
 gi|304445907|pdb|3MJO|B Chain B, Small Subunit (R2f) Of Native Ribonucleotide Reductase
           From Corynebacterium Ammoniagenes
          Length = 296

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 108/290 (37%), Gaps = 26/290 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W+       N W+P ++P+ +D+  W   N +T  E+L   R     
Sbjct: 19  NWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGL 72

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +++                AF E+VH+ ++  I  +L       E F 
Sbjct: 73  TLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFR 132

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E  ++  KA   + Y                             + E   FY+GF  
Sbjct: 133 WSEENENLQRKAKIIMSYYNGDDPLKKKV---------------ASTLLESFLFYSGFYL 177

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            + L    K+   A+  + I+RDES+H  +      Q   +      +E++  +  ++++
Sbjct: 178 PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYD 237

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
               EI Y  +      +G      ++++++ AN+  + +G E LF   E
Sbjct: 238 LYENEIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDE 284


>gi|329296713|ref|ZP_08254049.1| ribonucleoside-diphosphate reductase [Plautia stali symbiont]
          Length = 319

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 111/323 (34%), Gaps = 26/323 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    NN W+P +VP+ +DL  W+S   L   ++ +  R        
Sbjct: 10  NWNRIQDEKDLEVWNRLTNNFWLPEKVPLSNDLPAWQS---LAPQQQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++        +      P     L   +F EAVH+ ++  I ++L         +    
Sbjct: 67  DTIQNVIGAPGLMEDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCNTADVDAAYLWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  ++  KA   L++ +                          V  E   FY+GF   + 
Sbjct: 127 ENAALQNKAKIVLEHYRASDPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +      +           E QQ +  +L     
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKALETVDDARRAELQQFAIELLLALYE 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+ Y         VG      + ++ + AN+    +G E L        NP    +   
Sbjct: 232 NEVVYTEALYAD--VGWT-EEVKTFLHYNANKALMNLGYEALSPAELTAVNPAILSALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
           +  +  +FF    + Y  G  ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVE 311


>gi|319947340|ref|ZP_08021573.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           australis ATCC 700641]
 gi|319746582|gb|EFV98842.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           australis ATCC 700641]
          Length = 319

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPFLQKKAE--- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 136 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|222834323|gb|EEE72800.1| predicted protein [Populus trichocarpa]
          Length = 146

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 81/122 (66%), Positives = 99/122 (81%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
               KRVN  DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK 
Sbjct: 22  STTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKD 81

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            NGLT+DER +IKRNLGFF +++SL ANNIVL  YRH++ PECRQ+LLRQAFEEA+H+H 
Sbjct: 82  PNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHA 141

Query: 131 FQ 132
           +Q
Sbjct: 142 YQ 143


>gi|321309596|ref|YP_004191925.1| ribonucleotide reductase subunit beta [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801440|emb|CBY92086.1| ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Mycoplasma haemofelis str. Langford 1]
          Length = 327

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 66/331 (19%), Positives = 127/331 (38%), Gaps = 25/331 (7%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
             +  + N +   KY      +       W+  E+P+  D  +W     LT++E+ + K+
Sbjct: 8   FFSAVNWNNVSD-KYSKV--FWNQNVRQFWIDEEIPLSGDKLIWA--AELTENEKDVYKK 62

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG- 143
            L      ++   +  +  I   + NP     L      E +H+ ++  I ++L   +  
Sbjct: 63  VLVGLTLLDTHQGSLGMTNIAMSIDNPHATAVLQFMGMMEQMHAKSYSTIFSTLATSQEI 122

Query: 144 -ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
            ELF    + P +  K      + + +                     V  V  E   FY
Sbjct: 123 EELFKWSEQNPELQKKMEIISHHYENIQDDESL-----------YMAMVASVFLESFLFY 171

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           +GF  +L L     M+   E    I+RDE++H  +   +  +I         KE ++K  
Sbjct: 172 SGFYYMLLLAGKGMMINSGEIINLIIRDEAIHGLYIGVLSMEIFKTFNEEKQKEMKEKVI 231

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
            +L E    EI Y      K  +GL      +++++ AN+    +G E  +  T+   NP
Sbjct: 232 CLLRELMANEIKYTELIYSK--IGL-VEDVNRFLEYNANKALQNLGFENEYSTTDKDINP 288

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             + + +    K  +FF T+   Y +  +++
Sbjct: 289 IVF-NGLKTTTKSHDFFSTKGNGYIKTTKVE 318


>gi|289167885|ref|YP_003446154.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           mitis B6]
 gi|288907452|emb|CBJ22289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           mitis B6]
          Length = 321

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 23  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 79

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 80  SDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 139

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 140 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 184

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 185 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 243

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 244 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 300

Query: 341 TEY 343
             Y
Sbjct: 301 NGY 303


>gi|322389171|ref|ZP_08062732.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           parasanguinis ATCC 903]
 gi|321144076|gb|EFX39493.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           parasanguinis ATCC 903]
          Length = 321

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 24  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 80

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 81  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPFLQKKAE--- 137

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 138 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 185

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 186 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 244

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 245 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 301

Query: 341 TEY 343
             Y
Sbjct: 302 NGY 304


>gi|38638230|ref|NP_944413.1| ribonucleotide reductase subunit 2 [Psittacid herpesvirus 1]
 gi|81987371|sp|Q6UDJ1|RIR2_PSHV1 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|34500236|gb|AAQ73719.1| unknown [Psittacid herpesvirus 1]
          Length = 313

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/306 (19%), Positives = 115/306 (37%), Gaps = 18/306 (5%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
               E    +  N+W   E+    D       + LT+DE    K    F A+++ LV  N
Sbjct: 18  PDMRELRDLSIANNWNEFELCYARDEKD---VDCLTEDECDFYKFVFCFLAAADDLVNVN 74

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
            +  +       + + Y   Q   E VHS T+  +      ++    + Y          
Sbjct: 75  -LDNLVTLFPQKDIQHYYAEQIRIETVHSRTYSAVQLVFFRNDAIARDRYVLEAVKDGAI 133

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
              + +   + +        +         ++  ++ EG++F + FA I  L R +    
Sbjct: 134 RRKIDWLSRIQNEGDELTLPEK--------YILMILIEGIFFVSSFAAISYLRRHSIFQV 185

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
             +    I RDE++H      + N     +P    K   ++   +  EA  +E  +    
Sbjct: 186 TCQSNDLISRDETIHTTASCCIYNNWLKGHP----KPSVKRIHQLFKEAVEIECDFLVAR 241

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKKEKNFFET 338
            PK    ++  + + +++F ANR    IG+  ++     +P  +   ++ L+K  NFFE 
Sbjct: 242 APKAARLIDIDAIQSFVRFTANRWLSMIGVPTIYDDPAPDP-TFPLALMSLEKNVNFFEH 300

Query: 339 RVTEYQ 344
           R T Y 
Sbjct: 301 RSTAYS 306


>gi|296876816|ref|ZP_06900864.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432318|gb|EFH18117.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           parasanguinis ATCC 15912]
          Length = 321

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 24  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 80

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 81  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPFLQKKAE--- 137

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 138 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 185

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 186 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 244

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 245 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 301

Query: 341 TEY 343
             Y
Sbjct: 302 NGY 304


>gi|322391986|ref|ZP_08065450.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           peroris ATCC 700780]
 gi|321145212|gb|EFX40609.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           peroris ATCC 700780]
          Length = 320

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVNALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTDTNPYLQKKAQIIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  Q  +                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYQNGTPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ +     +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPQDEQEKLKDWMYDLLYTLYENEEGYTESLY--D 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|307706628|ref|ZP_07643435.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
           mitis SK321]
 gi|307618083|gb|EFN97243.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
           mitis SK321]
          Length = 320

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|304373620|ref|YP_003858365.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB16]
 gi|299829576|gb|ADJ55369.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB16]
          Length = 391

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 127/356 (35%), Gaps = 37/356 (10%)

Query: 10  IQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +          ++ M     + V +    K+           +  W P E+ +  D   +
Sbjct: 4   VMNTNPDHKHLEQPMFFGEDTGVARYEEQKHRVFENLTEKQLSFFWRPEEIDLSIDRMQY 63

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                + + E+++   NL +    +++      LA     S+     ++   AF E +HS
Sbjct: 64  ---AKMPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSMETWIETWAFSETIHS 120

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS------------------ 170
            ++ +I  +L +D  + F+      +I  ++    +Y   L                   
Sbjct: 121 RSYTHIQRNLHIDPSKEFDKILRNEAIMKRSASMTKYYDDLIAECHELKNIVLKIEMLTS 180

Query: 171 ----SPSFTTGTKDADQEFLQDLFVFYVVF------EGMWFYTGFAQILSLGRANKMVGI 220
                 S     K   ++  +     Y+        E + FY  F    +     KM G 
Sbjct: 181 HGYPDESIAEYEKKRKEQMRKCKIALYLCMHAVNALEAIRFYVSFTFTFNFAEQGKMEGN 240

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYA 276
           A+  + I RDE+LH       I   ++        E    +++++  +  E    E  +A
Sbjct: 241 AKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMAEIAFQYEEEATQIFLEVYEQEKEWA 300

Query: 277 HETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
                 G   G++  S   Y++ + ++R   +GL+  FK + NP+PWM++ +    
Sbjct: 301 EHLFSIGDVDGVSLKSTIAYIEHLTDQRMRAVGLQSPFKPSPNPYPWMNKWLKSDN 356


>gi|307704819|ref|ZP_07641714.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus
           mitis SK597]
 gi|307708708|ref|ZP_07645171.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           mitis NCTC 12261]
 gi|307709353|ref|ZP_07645811.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           mitis SK564]
 gi|307615282|gb|EFN94492.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           mitis NCTC 12261]
 gi|307619936|gb|EFN99054.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           mitis SK564]
 gi|307621648|gb|EFO00690.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus
           mitis SK597]
          Length = 320

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNVEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|322376536|ref|ZP_08051029.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. M334]
 gi|321282343|gb|EFX59350.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. M334]
          Length = 320

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|322374376|ref|ZP_08048890.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. C300]
 gi|321279876|gb|EFX56915.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. C300]
          Length = 320

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 110/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAEIIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P     + ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQGKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|330858746|ref|YP_004415121.1| putative ribonucleotide reductase B subunit [Shigella phage Shfl2]
 gi|327397680|gb|AEA73182.1| putative ribonucleotide reductase B subunit [Shigella phage Shfl2]
          Length = 389

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 133/361 (36%), Gaps = 42/361 (11%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    +      +  W P EV +  
Sbjct: 1   MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT--------------- 168
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y                  
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMKRAESIGRYYDDVLVKTREYQNAVEDY 174

Query: 169 --LSSPSFTTGTKDADQEFLQDLFVFYVV--------FEGMWFYTGFAQILSLGRAN-KM 217
             + S  F         E  +   +  +          E + FY  FA   +  +    M
Sbjct: 175 EGILSEGFRKEELGKVVECTKRALMKSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIM 234

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEI 273
            G A+  ++I RDE LHL     +I Q+++           +E +Q++  +  E    E 
Sbjct: 235 EGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEK 294

Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
            +A      G   GLN  S   ++ ++   R  Q GL  P+     ++P+PW+ E ++  
Sbjct: 295 DWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYLNSD 354

Query: 331 K 331
            
Sbjct: 355 N 355


>gi|323304329|gb|EGA58102.1| Rnr2p [Saccharomyces cerevisiae FostersB]
          Length = 229

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 5/154 (3%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
            ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W   N + ++ER
Sbjct: 74  KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +  
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLS 170
            D  E   LFN    +P I  KA WAL++ Q   
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQDAD 225


>gi|315153942|gb|EFT97958.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0031]
          Length = 321

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 118/314 (37%), Gaps = 29/314 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W++   L+D E+  +    G     +++ + + +  + 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTFLDTVQSESGMDQLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
             +  P     L    F E+VH+ ++  I ++L   +   ++F        +  KA    
Sbjct: 79  NDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAERIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  +  +                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYKNGTPLEKKI---------------ASVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P     + +     +L+E    E  Y  E     
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEELYDD- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
            +G      + ++++ AN+    +G++PLF  T    NP   M+ +       +FF    
Sbjct: 243 -LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEYQQGA--ELKWD 352
             Y  G    +K D
Sbjct: 300 NGYLLGTVEAMKDD 313


>gi|312867164|ref|ZP_07727374.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           parasanguinis F0405]
 gi|311097293|gb|EFQ55527.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           parasanguinis F0405]
          Length = 321

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 24  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 80

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 81  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPFLQRKAE--- 137

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 138 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 185

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 186 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 244

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 245 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 301

Query: 341 TEY 343
             Y
Sbjct: 302 NGY 304


>gi|323479608|gb|ADX79047.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis 62]
          Length = 321

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 117/314 (37%), Gaps = 29/314 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W++   L+D E+  +    G     +++ + + +  + 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGMDQLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
             +  P     L    F E+VH+ ++  I ++L   +   ++F        +  KA    
Sbjct: 79  NDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAERIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  +  +                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYKNGTPLEKKI---------------ASVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P     + +     +L+E    E  Y  E     
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEEHYTEELYDD- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRV 340
            +G      + ++++ AN+    +G++PLF       NP   M+ +       +FF    
Sbjct: 243 -LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEYQQGA--ELKWD 352
             Y  G    +K D
Sbjct: 300 NGYLLGTVEAMKDD 313


>gi|307132178|ref|YP_003884194.1| ribonucleoside-diphosphate reductase 2, subunit beta, ferritin-like
           protein [Dickeya dadantii 3937]
 gi|306529707|gb|ADM99637.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
           protein [Dickeya dadantii 3937]
          Length = 330

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 62/319 (19%), Positives = 113/319 (35%), Gaps = 31/319 (9%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +     N W+P ++ + +D+  W     L+D ER +  R        ++L       A
Sbjct: 32  EVWNRLTTNFWLPEKIALSNDMPSWAQ---LSDIERQLTLRVFTGLTLLDTLQNTQGAPA 88

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
           +      P     L    F EAVH+ ++  I ++L L     + ++       +  KA  
Sbjct: 89  LMADALTPHEEAVLSNIGFMEAVHARSYSAIFSTLCLTSEVDDAYSWSERNQPLQNKAAL 148

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L + Q                          V  E   FY+GF   +      ++   A
Sbjct: 149 ILSHYQHDDPLKKKI---------------ASVFLESFLFYSGFYLPMYWASRGQLTNTA 193

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RDE++H  +      Q          ++ Q  +  +L      E+ Y HE   
Sbjct: 194 DLIRLIIRDEAVHGYYIGYKYQQGLKRVGTQQQRDLQAFAYDLLQTLYDNEVDYTHELYD 253

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFET 338
              VG +     +++ + AN+    +G E LF       NP    +     ++  +FF  
Sbjct: 254 D--VGWS-DDVVKFLHYNANKALMNLGYEALFPAGMTDVNPAILAALSPGAEENHDFFSG 310

Query: 339 RVTEYQQGAELK-----WD 352
             + Y  G  ++     WD
Sbjct: 311 AGSSYVIGKAVETEDEDWD 329


>gi|56808544|ref|ZP_00366279.1| COG0208: Ribonucleotide reductase, beta subunit [Streptococcus
           pyogenes M49 591]
 gi|209559615|ref|YP_002286087.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes NZ131]
 gi|209540816|gb|ACI61392.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Streptococcus pyogenes NZ131]
          Length = 319

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 120/333 (36%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+  E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ +   V AI   +  P     L    F E+VH+ ++  I ++L   +   E
Sbjct: 60  GGLTLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA    +  +   +                         E   FY+G
Sbjct: 120 IFEWTNNNEFLQKKAQIINEIYEHGDALQKKV---------------ASTYLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E P    + F+     +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 225 LYQLYENEEKYTKTLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            M+ +       +FF      Y  G+   +  D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313


>gi|293374706|ref|ZP_06621014.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
           sanguinis PC909]
 gi|325840602|ref|ZP_08167083.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
           sp. HGF1]
 gi|292646620|gb|EFF64622.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
           sanguinis PC909]
 gi|325490251|gb|EGC92584.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
           sp. HGF1]
          Length = 321

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 72/317 (22%), Positives = 130/317 (41%), Gaps = 24/317 (7%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           Y +  + YL      W+P E+P+ +D ++W +   L ++ +L  +R LG     ++   +
Sbjct: 15  YQFYDDLYLKQTEQFWLPEEIPVSEDKSIWDT---LDENIKLTYERILGGLTLLDT-EQS 70

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSIT 156
             +  I     N   +  L   A  E++H+ ++  I  +L   E   ELFN   E   + 
Sbjct: 71  TGIQKIAEKSDNLFIKSILALFAGFESIHARSYSTIFQTLCTTERIEELFNWVEETKPLQ 130

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
            K +  ++            G  D +  F+  +    +  EG+ FY+GF   L L    K
Sbjct: 131 EKVDQIMRSY---------YGVADKESLFMSMVGC--LCLEGICFYSGFYLPLWLAGQGK 179

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           MV   E    I+RDE LH         Q+  E       + +Q++  M+ E   +E+ Y+
Sbjct: 180 MVNSGEIINLILRDEKLHTVGVGFFAQQLLSEFDESIQAKLKQQAVEMMQEIYEVEVEYS 239

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEK 333
                   + +       Y+Q+  N     + L PLF   E   NP   ++ +    K  
Sbjct: 240 KVLYEN--LDM-IDDVVSYIQYNVNYALQCLNLNPLFDIVESDINPIV-LNGISTETKNH 295

Query: 334 NFFETRVTEYQQGAELK 350
           +FF T+   Y +  +++
Sbjct: 296 DFFSTKGNGYIKTTKVE 312


>gi|306829459|ref|ZP_07462649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           mitis ATCC 6249]
 gi|304428545|gb|EFM31635.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           mitis ATCC 6249]
          Length = 320

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  SDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAE--- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 136 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|322387902|ref|ZP_08061509.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           infantis ATCC 700779]
 gi|321141175|gb|EFX36673.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           infantis ATCC 700779]
          Length = 320

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 115/303 (37%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNQEKDLVGKVFGGLTLLDTMQSETGVNALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKTEIEEIFEWTDTNPYLQKKAQ--- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 136 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ +     +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKDWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|307268568|ref|ZP_07549940.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX4248]
 gi|306515057|gb|EFM83600.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX4248]
          Length = 321

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 119/314 (37%), Gaps = 29/314 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W++   L+D E+  +    G F   +++ + + +  + 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGFTLLDTVQSESGMDQLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
             +  P     L    F E+VH+ ++  I ++L   +   ++F        +  KA    
Sbjct: 79  NDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAERIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  +  +                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYKNGTPLEKKI---------------ASVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P     + +     +L+E    E  Y  E     
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEELYDD- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
            +G      + ++++ AN+    +G++PLF  T    NP   M+ +       +FF    
Sbjct: 243 -LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEYQQGA--ELKWD 352
             Y  G    +K D
Sbjct: 300 NGYLLGTVEAMKDD 313


>gi|331266449|ref|YP_004326079.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           oralis Uo5]
 gi|326683121|emb|CBZ00739.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           oralis Uo5]
          Length = 320

 Score =  129 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  SDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAE--- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 136 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|10834911|ref|NP_066872.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 3]
 gi|5102912|dbj|BAA78729.1| UL40 protein [Marek's disease virus serotype 2 MDV2]
 gi|5689312|dbj|BAA82936.1| UL40 product homolog [Marek's disease virus serotype 2 MDV2]
 gi|10800005|dbj|BAB16550.1| UL40 protein [Gallid herpesvirus 3]
          Length = 353

 Score =  129 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 113/312 (36%), Gaps = 20/312 (6%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W  TE  + +DL        L+++E+   +    F ++++ LV  N
Sbjct: 61  PDIGHLRALSIMNRWTETEFVVAEDLGD---VAKLSEEEKNFYRFLFTFLSAADDLVNLN 117

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
            +  +       +   Y   Q   EAVHS  +  I   L  ++      Y +    +   
Sbjct: 118 -IDNLLGLFEQKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSSARAKYVQSALESPVI 176

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
              L++         +   K          ++  ++ EG++F   FA+I  L   N  V 
Sbjct: 177 QSKLEWLDRRILECTSIPEK----------YILMILTEGIFFSASFARIAYLRTNNLFVV 226

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
             +    I RDE++H+     +       N     K    + + +  EA  LE A+    
Sbjct: 227 TCQINNLISRDEAIHVEASCCIFKNYIAGN-----KPSTARIQALFSEAVDLECAFLRAA 281

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
            P+    L+  S   Y+++ A+R    + + P++        +   ++      NFFE R
Sbjct: 282 APRDSRLLDIGSICSYVRYSADRLLRMLDVPPIYGEPSPAADFPLSLMSASNNTNFFERR 341

Query: 340 VTEYQQGAELKW 351
            T Y  G+    
Sbjct: 342 STAYS-GSVSND 352


>gi|315223183|ref|ZP_07865044.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           anginosus F0211]
 gi|315187615|gb|EFU21369.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           anginosus F0211]
          Length = 319

 Score =  129 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 114/303 (37%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+ +E+ ++ +  G     +++ + + V AI 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSPEEKDLVGKVFGGLTLLDTMQSQSGVEAIR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
             +  P     L    F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  GDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFEWTNTNPYLQKKAEIIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     ++                      V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGNALEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    + F++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQETFREWMYDLLYTLYENEEGYTETLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G + LF  T    NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDSLFPDTADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|270292678|ref|ZP_06198889.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           sp. M143]
 gi|270278657|gb|EFA24503.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           sp. M143]
          Length = 322

 Score =  129 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  SDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAEIIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGSPLEKKI---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|29375101|ref|NP_814254.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis V583]
 gi|227519132|ref|ZP_03949181.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis TX0104]
 gi|227553836|ref|ZP_03983885.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis HH22]
 gi|229547642|ref|ZP_04436367.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis TX1322]
 gi|229548395|ref|ZP_04437120.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis ATCC 29200]
 gi|255971023|ref|ZP_05421609.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1]
 gi|255973536|ref|ZP_05424122.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2]
 gi|256617388|ref|ZP_05474234.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC
           4200]
 gi|256761391|ref|ZP_05501971.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3]
 gi|256852443|ref|ZP_05557819.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis T8]
 gi|256957628|ref|ZP_05561799.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5]
 gi|256959663|ref|ZP_05563834.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96]
 gi|256963238|ref|ZP_05567409.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           HIP11704]
 gi|257080134|ref|ZP_05574495.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1]
 gi|257080866|ref|ZP_05575227.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol]
 gi|257083550|ref|ZP_05577911.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1]
 gi|257085823|ref|ZP_05580184.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6]
 gi|257088966|ref|ZP_05583327.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188]
 gi|257415187|ref|ZP_05592181.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           AR01/DG]
 gi|257418242|ref|ZP_05595236.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11]
 gi|257420749|ref|ZP_05597739.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis X98]
 gi|293384855|ref|ZP_06630698.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis R712]
 gi|293389145|ref|ZP_06633612.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis S613]
 gi|294780704|ref|ZP_06746065.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis PC1.1]
 gi|300861776|ref|ZP_07107856.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|307272281|ref|ZP_07553541.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0855]
 gi|307275556|ref|ZP_07556697.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX2134]
 gi|307282794|ref|ZP_07562994.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0860]
 gi|307288831|ref|ZP_07568809.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0109]
 gi|307290616|ref|ZP_07570524.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0411]
 gi|312900212|ref|ZP_07759524.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0470]
 gi|312904832|ref|ZP_07763972.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0635]
 gi|312908153|ref|ZP_07767131.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis DAPTO 512]
 gi|312952106|ref|ZP_07770987.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0102]
 gi|312979089|ref|ZP_07790804.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis DAPTO 516]
 gi|29342560|gb|AAO80325.1| ribonucleoside-diphosphate reductase 2, beta subunit [Enterococcus
           faecalis V583]
 gi|227073409|gb|EEI11372.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis TX0104]
 gi|227177089|gb|EEI58061.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis HH22]
 gi|229306611|gb|EEN72607.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis ATCC 29200]
 gi|229307134|gb|EEN73121.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis TX1322]
 gi|255962041|gb|EET94517.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1]
 gi|255966408|gb|EET97030.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2]
 gi|256596915|gb|EEU16091.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC
           4200]
 gi|256682642|gb|EEU22337.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3]
 gi|256712297|gb|EEU27329.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis T8]
 gi|256948124|gb|EEU64756.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5]
 gi|256950159|gb|EEU66791.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96]
 gi|256953734|gb|EEU70366.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           HIP11704]
 gi|256988164|gb|EEU75466.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1]
 gi|256988896|gb|EEU76198.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol]
 gi|256991580|gb|EEU78882.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1]
 gi|256993853|gb|EEU81155.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6]
 gi|256997778|gb|EEU84298.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188]
 gi|257157015|gb|EEU86975.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
           ARO1/DG]
 gi|257160070|gb|EEU90030.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11]
 gi|257162573|gb|EEU92533.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis X98]
 gi|291077859|gb|EFE15223.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis R712]
 gi|291081516|gb|EFE18479.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis S613]
 gi|294452314|gb|EFG20755.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis PC1.1]
 gi|295114163|emb|CBL32800.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Enterococcus sp. 7L76]
 gi|300848301|gb|EFK76058.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|306498330|gb|EFM67839.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0411]
 gi|306500300|gb|EFM69639.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0109]
 gi|306503650|gb|EFM72881.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0860]
 gi|306507661|gb|EFM76790.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX2134]
 gi|306511170|gb|EFM80180.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0855]
 gi|310625861|gb|EFQ09144.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis DAPTO 512]
 gi|310629888|gb|EFQ13171.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0102]
 gi|310631838|gb|EFQ15121.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0635]
 gi|311288123|gb|EFQ66679.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis DAPTO 516]
 gi|311292573|gb|EFQ71129.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0470]
 gi|315026267|gb|EFT38199.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX2137]
 gi|315028520|gb|EFT40452.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX4000]
 gi|315032246|gb|EFT44178.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0017]
 gi|315035532|gb|EFT47464.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0027]
 gi|315143982|gb|EFT87998.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX2141]
 gi|315146930|gb|EFT90946.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX4244]
 gi|315155004|gb|EFT99020.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0043]
 gi|315158779|gb|EFU02796.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0312]
 gi|315161036|gb|EFU05053.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0645]
 gi|315166222|gb|EFU10239.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX1302]
 gi|315167729|gb|EFU11746.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX1341]
 gi|315170811|gb|EFU14828.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX1342]
 gi|315173869|gb|EFU17886.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX1346]
 gi|315574921|gb|EFU87112.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0309B]
 gi|315576500|gb|EFU88691.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0630]
 gi|315582368|gb|EFU94559.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0309A]
 gi|327534208|gb|AEA93042.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
           faecalis OG1RF]
          Length = 321

 Score =  129 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 117/314 (37%), Gaps = 29/314 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W++   L+D E+  +    G     +++ + + +  + 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGMDQLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
             +  P     L    F E+VH+ ++  I ++L   +   ++F        +  KA    
Sbjct: 79  NDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAERIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  +  +                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYKNGTPLEKKI---------------ASVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P     + +     +L+E    E  Y  E     
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEELYDD- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRV 340
            +G      + ++++ AN+    +G++PLF       NP   M+ +       +FF    
Sbjct: 243 -LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEYQQGA--ELKWD 352
             Y  G    +K D
Sbjct: 300 NGYLLGTVEAMKDD 313


>gi|315149360|gb|EFT93376.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX0012]
          Length = 321

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 116/314 (36%), Gaps = 29/314 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W++ + L   E+  +    G     +++ + + +  + 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWRTLSNL---EKTTVGYVFGGLTLLDTVQSESGMDQLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
             +  P     L    F E+VH+ ++  I ++L   +   ++F        +  KA    
Sbjct: 79  NDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAERIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  +  +                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYKNGTPLEKKI---------------ASVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P     + +     +L+E    E  Y  E     
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEELYDD- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRV 340
            +G      + ++++ AN+    +G++PLF       NP   M+ +       +FF    
Sbjct: 243 -LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEYQQGA--ELKWD 352
             Y  G    +K D
Sbjct: 300 NGYLLGTVEAMKDD 313


>gi|327458665|gb|EGF05013.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1057]
          Length = 319

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 122/319 (38%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WE         W+ T +P+ +DL  W+    L+  E+ ++ +  G  
Sbjct: 9   NWNVIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++L + + V A+ + +             F E+VH+ ++  I ++L       E+F+
Sbjct: 63  TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P +  KA         + +  +  GT         +  +  V  E   FY+GF  
Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E P    ++ ++    +L+ 
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYT 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E  Y         VG      + ++++ AN+    +G +PLF       NP   M+
Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|269468252|gb|EEZ79942.1| ribonucleotide-diphosphate reductase subunit beta [uncultured SUP05
           cluster bacterium]
          Length = 319

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 22/284 (7%)

Query: 70  SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
               L  +E+ +   NL +    +S+   +  +A    +S PE   ++   +F E +HS 
Sbjct: 2   DFAKLLPNEKHIFISNLQYQILLDSVQGRSPNIAFLPIVSLPELENWIETWSFSETIHSR 61

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS------------FTTG 177
           ++ +II ++  + G +F+   +   I  +A    ++   L   +                
Sbjct: 62  SYTHIIRAIVNEPGVVFDDIMKTDKIIQRAESVSKHYDELIKCTQAYLLHGEGKLQIDGK 121

Query: 178 TKDADQEFLQD----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
             D D   L+       +   + E + FY  FA   +      M G A+  + I RDE+L
Sbjct: 122 NADVDLYCLKRQLYLTVMSVNILEAVRFYVSFACSFAFAERKVMEGNAKIIKMIARDEAL 181

Query: 234 HLNFGIDVINQIK--IENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           HL     ++N ++   ++P +    KE + +   M  EA   E  +A      G  +GLN
Sbjct: 182 HLTGTQHMLNLMRDGKDDPDMEKIAKECENEVIQMFKEACEQEKDWAEYLFRDGSMIGLN 241

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK 331
           A   +QY+++I N R + +GL+P+F ++  NP PW++  +D   
Sbjct: 242 ADILKQYLEYITNVRMNALGLKPIFDEHVTNPLPWINSWLDSDN 285


>gi|332638431|ref|ZP_08417294.1| ribonucleotide-diphosphate reductase subunit beta [Weissella
           cibaria KACC 11862]
          Length = 320

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 109/303 (35%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    +T++E  ++    G     ++L + + + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KMTEEEHYLVGHVFGGLTLLDTLQSQDGMASLK 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           R +        L    F E+VH+ ++  I  +L       E+F+       +  KA    
Sbjct: 79  RSVRTQHEEAVLNNIEFMESVHAKSYSSIFETLNTPAEIDEIFSWTNTNDFLQYKAQRIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           Q  QT                         V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 QIYQTGDDLQKKV---------------ASVFLETFLFYSGFYTPLWYLGHNKLNNVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E       E +     +L +    E  Y        
Sbjct: 184 IKLILRDESVHGTYIGYKFQLGFNELTEDQQSEMKMWMYDLLLDLYNNEEQYTKHLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            +G    S   ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -IGWT-ESVLTFLRYNANKALMNLGQDPLFPDGAEDVNPIV-MNGISTTTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|293365329|ref|ZP_06612046.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           oralis ATCC 35037]
 gi|306825287|ref|ZP_07458629.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|307703869|ref|ZP_07640810.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
           oralis ATCC 35037]
 gi|315613100|ref|ZP_07888010.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis ATCC 49296]
 gi|291316779|gb|EFE57215.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           oralis ATCC 35037]
 gi|304432723|gb|EFM35697.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|307622704|gb|EFO01700.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
           oralis ATCC 35037]
 gi|315314662|gb|EFU62704.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis ATCC 49296]
          Length = 320

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  SDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAEIIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|332362636|gb|EGJ40434.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK49]
          Length = 332

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V A+ 
Sbjct: 35  WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 91

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +             F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 92  KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 148

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  +  V  E   FY+GF   L     NK+  +AE 
Sbjct: 149 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 196

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 197 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 254

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 255 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 312

Query: 341 TEY 343
             Y
Sbjct: 313 NGY 315


>gi|66391516|ref|YP_239041.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB43]
 gi|62288604|gb|AAX78587.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB43]
          Length = 391

 Score =  129 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 122/356 (34%), Gaps = 37/356 (10%)

Query: 10  IQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +          ++ M     + V +    K+           +  W P EV +  D   +
Sbjct: 4   VMNTNPDHKHLEQPMFFGEDTGVARYEEQKHRVFETLTEKQLSFFWRPEEVDLSIDRMQY 63

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
                + + E+++   NL +    +++      LA     S+     ++   AF E +HS
Sbjct: 64  ---AKMPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSMETWIETWAFSETIHS 120

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL-- 186
            ++ +I  +L +D  + F+      +I  ++    +Y   L +            E +  
Sbjct: 121 RSYTHIQRNLHIDPAKEFDKILRNEAIMKRSASMTKYYDDLIAECHELKNIVLKIEMMTS 180

Query: 187 --------------------------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
                                               E + FY  F    +     KM G 
Sbjct: 181 HGYPDESIAEYEQKRKEQMRKCKVALYLCMHAVNALEAIRFYVSFTFTFNFAEQGKMEGN 240

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYA 276
           A+  + I RDE+LH       I   ++        E    +++++  +  E    E  +A
Sbjct: 241 AKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMAEIAYQYEEEATQIFLEVYEQEKEWA 300

Query: 277 HETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
                 G   G+   S   Y++ + ++R   +GL+  FK + NP+PWM++ +    
Sbjct: 301 EHLFSIGDVDGVTLKSTIAYIEHLTDQRMRAVGLQSPFKPSPNPYPWMNKWLKSDN 356


>gi|260583950|ref|ZP_05851698.1| ribonucleoside-diphosphate reductase, beta subunit [Granulicatella
           elegans ATCC 700633]
 gi|260158576|gb|EEW93644.1| ribonucleoside-diphosphate reductase, beta subunit [Granulicatella
           elegans ATCC 700633]
          Length = 336

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 126/352 (35%), Gaps = 40/352 (11%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEK-----------YLSACNNHWMPTEVPMQDDLAL 67
           + +KR  N     N   P+ Y  A +            +       W+ T +P+ +DL  
Sbjct: 1   MSEKRYFNEILSQNASAPVAYYKAIDWNQVEDMIDKMTWEKLTEQFWLDTRIPVSNDLDD 60

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W++   L+  E+ ++ +  G     ++L +      +  ++             F E+VH
Sbjct: 61  WRT---LSPAEKDVVGKVFGGLTLLDTLQSEEGASLMKDYVRTQHEEAVWNNIQFMESVH 117

Query: 128 SHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           + ++  I ++L       E+F        +  KA    +  Q+                 
Sbjct: 118 AKSYSTIFSTLHTKAEIEEIFEWTNNNEFLQYKAQKINEIYQSRD--------------- 162

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
              + V   + E   FY+GF   L     NK+  +AE  + I+RDES+H  +      Q 
Sbjct: 163 ALKMKVASTMLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYTGYKFQQG 222

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
             E P    +  +     +  E    E+ Y      +  VG      + ++++ AN+   
Sbjct: 223 YNELPLEEQETLKMWVYQLCLELYQNEVKYTQSIYDQ--VGWT-EKVKVFIRYNANKALQ 279

Query: 306 QIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +G +PLF       +P   M+ +       +FF      Y  G    ++ D
Sbjct: 280 NLGFDPLFPDTAEDVDPIV-MNGISTGTSNHDFFSQVGNGYLLGTVEAMEDD 330


>gi|227510692|ref|ZP_03940741.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227513708|ref|ZP_03943757.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           buchneri ATCC 11577]
 gi|227522501|ref|ZP_03952550.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           hilgardii ATCC 8290]
 gi|227083027|gb|EEI18339.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           buchneri ATCC 11577]
 gi|227090323|gb|EEI25635.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           hilgardii ATCC 8290]
 gi|227189813|gb|EEI69880.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 318

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 59/303 (19%), Positives = 114/303 (37%), Gaps = 26/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL+ W++   L  D + ++    G     ++L +   + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLSDWRT---LDQDHQWVVGHVFGGLTLLDTLQSQEGMASLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
           + +  P     L    F E+VH+ ++  I ++L   E   E+F+       +  KA    
Sbjct: 79  KDVQTPHETAVLNNIQFMESVHAKSYSSIFSTLNTPEQIDEIFDWSDTEEFLQNKALKIR 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              +    P                  +  V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 DIYENNPDPLKKK--------------IASVFLETFLFYSGFYTPLWYLGHNKIPNVAEI 184

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          + P    ++ +     +L++    E  Y H    + 
Sbjct: 185 IKLILRDESVHGTYIGYKFQIGFNQLPKTKQEDLKNWLYDLLYKLYANEEKYTHLLYDQ- 243

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
             G        ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 244 -TGWT-DDVLVFIRYNANKALMNLGQDPLFPDTAEDVNPVV-MNGISTSTANHDFFSQVG 300

Query: 341 TEY 343
             Y
Sbjct: 301 NGY 303


>gi|307244651|ref|ZP_07526755.1| ribonucleoside-diphosphate reductase, beta subunit
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492032|gb|EFM64081.1| ribonucleoside-diphosphate reductase, beta subunit
           [Peptostreptococcus stomatis DSM 17678]
          Length = 328

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 119/304 (39%), Gaps = 19/304 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+P EVP+  D+  W   + L++ ER++ KR L      ++   N+ + ++
Sbjct: 30  FWDENVKQFWLPEEVPISKDIPSW---SQLSESERVLYKRVLAGLTLLDTKQGNDGIPSM 86

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
                N + +  L      E +H+ ++  I T+L   +   +LF    E P +  KA   
Sbjct: 87  MELTENFQRKAVLSFMGTMEEIHAKSYSSIFTTLLSKQEINDLFVWIEEEPLLQNKAKLV 146

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
           L+  +   +P                     V  E   FY+GF   L L    KM+   E
Sbjct: 147 LRQYKNTHTPKGL-----------YMSMATSVFLESFLFYSGFFYPLFLAGQGKMISSGE 195

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
               I+RDESLH  +   +  +   E  +    E ++K  ++L E    E  Y       
Sbjct: 196 IISLILRDESLHGKYIGLLAQEKFNEFHYDDKNELKEKVYSLLKELMENEEKYTKLLYEG 255

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
              GL       ++++ AN     +G E  +K        ++ +    K  +FF T+   
Sbjct: 256 S--GL-EEQVINFLKYNANTALTNMGFEEFYKVEPVNAIVLNGLSTETKTHDFFSTKGNG 312

Query: 343 YQQG 346
           YQ+G
Sbjct: 313 YQKG 316


>gi|297567587|ref|YP_003686558.1| hypothetical protein Mesil_3232 [Meiothermus silvanus DSM 9946]
 gi|297567764|ref|YP_003686735.1| hypothetical protein Mesil_3416 [Meiothermus silvanus DSM 9946]
 gi|296852036|gb|ADH65050.1| hypothetical protein Mesil_3232 [Meiothermus silvanus DSM 9946]
 gi|296852213|gb|ADH65227.1| hypothetical protein Mesil_3416 [Meiothermus silvanus DSM 9946]
          Length = 323

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 61/309 (19%), Positives = 112/309 (36%), Gaps = 26/309 (8%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+  E+P+ DD   W +   L  +ER   ++ L      ++L     +  +
Sbjct: 17  FWDQNVRQFWVDEEIPLADDKLTWTT---LAPEERETYEKVLVGLTLLDTLQGGVGMPLL 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA 162
            + + + + +  L      E +H+ ++  I ++L        LF      P + AK    
Sbjct: 74  VQTMESAQVKAVLSFMGAMEQMHAKSYSLIFSTLSPLPRIETLFRWAEGHPLLQAKVARV 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
               + + +                      V+ E   FY+GF   L L    ++V   E
Sbjct: 134 EGRYRGVFAGDAGL----------YLALANSVLLESYLFYSGFYYPLLLAGEGRLVNSGE 183

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-P 281
               I+RDE++H  +   +  Q+    P       +   R  L + + LE AY  E   P
Sbjct: 184 IISLILRDEAIHGVYVGMLAQQVYARLPEGEQSRLRTALREDLEKLSALEEAYTEELYAP 243

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDL-KKEKNFFE 337
            G V        ++ ++ A++    +G  P F       NP   +   I L  K  +FF 
Sbjct: 244 IGRV----EEVRRFCRYNADKALMNLGQPPYFGVRAEEVNPV--VLAGISLRTKNHDFFS 297

Query: 338 TRVTEYQQG 346
           T+   Y + 
Sbjct: 298 TKGNGYVKA 306


>gi|148994532|ref|ZP_01823712.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP9-BS68]
 gi|147927202|gb|EDK78238.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP9-BS68]
          Length = 319

 Score =  129 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|310764903|gb|ADP09853.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia sp.
           Ejp617]
          Length = 319

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 118/330 (35%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W S   L  +++ +  R        
Sbjct: 10  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWNS---LNAEQQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+      P     +   +F EAVH+ ++  I ++L         +    
Sbjct: 67  DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  KA   LQ+                            V  E   FY+GF   + 
Sbjct: 127 DNAPLQGKAQIILQHYYHNDPLKKKI---------------ASVFLESFLFYSGFYLPVY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I++DE++H  +      +   +   L  +E QQ +  +L E   
Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPLRKEELQQFAIELLLELYE 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+AY         VG      ++++ + AN+    +G E LF       NP    +   
Sbjct: 232 NELAYTEALYAG--VGW-QKDVKKFLHYNANKALMNLGYEALFPADMTDVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTQDEDWD 318


>gi|168489010|ref|ZP_02713209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP195]
 gi|183572389|gb|EDT92917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP195]
 gi|332073523|gb|EGI84002.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA17570]
          Length = 320

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|238695377|ref|YP_002922570.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
           JS10]
 gi|220029513|gb|ACL78447.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
           JS10]
          Length = 379

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 138/350 (39%), Gaps = 32/350 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    E      +  W P EV +  
Sbjct: 1   MSTVFN-TTPVDVLVEPMFFGSGLGIARYDIQ--RHKVFEELCEKQLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+       A+   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQGRAPSAALQALISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS---------- 173
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +          
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEILLDEAIMKRAESIGRYYDDVIEKTRLYQNALEEY 174

Query: 174 --FTTGTKDADQEFLQDL---FVFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYI 227
             F+ G K A  E ++ L          E + FY  FA   +  +    M G A+  ++I
Sbjct: 175 HEFSEGVKQAKYELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFI 234

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            RDE LHL     +I Q+++           +E +Q++  +  E    E  +A      G
Sbjct: 235 ARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEKEWAGHLFKDG 294

Query: 284 F-VGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
              GLN  +   ++ ++   R  Q GL  P+    T +P+PW+ E ++  
Sbjct: 295 TCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDAPTRHPYPWIREYLNSD 344


>gi|262038309|ref|ZP_06011695.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
           goodfellowii F0264]
 gi|261747660|gb|EEY35113.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
           goodfellowii F0264]
          Length = 334

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 130/306 (42%), Gaps = 19/306 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE     D+  W S   L  + +L   + LG     ++L ++  +  I
Sbjct: 22  FWEQNLKQFWIDTEYIPSKDIDSWHS---LEPEMKLAYLQVLGGLTLLDTLQSHTGMPKI 78

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+ + +CR  L      E +H+ ++  I T++       E FN  +E   +  KAN  
Sbjct: 79  IDHIESLQCRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFNWVQENEHLQYKANKI 138

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y Q +++P  T          +       V  E   FY+GF   L L    +MV   +
Sbjct: 139 DYYYQKMNNPKATKRE-------IYMALCASVYLETYLFYSGFFLPLWLAGQGEMVASCD 191

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+ DES+H  F   +  +I         +  +++ + ++H+    E  Y  E    
Sbjct: 192 IIKKIIADESIHGVFVGLLSQEIYATFSEEEKESVRKELKELMHDLYENEARYTDEVY-- 249

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETRV 340
           G VGL A   ++Y+++ AN+    +G E  F+  + NP   +   ++++  + +FF  + 
Sbjct: 250 GDVGLTA-DVKEYIRYNANKALMNLGFEEEFEVKDVNPI--VLNGLNVETTQHDFFSKKS 306

Query: 341 TEYQQG 346
           T Y++ 
Sbjct: 307 TNYEKA 312


>gi|703073|gb|AAA80557.1| ribonucleotide reductase small subunit [Gallid herpesvirus 2]
          Length = 354

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 114/312 (36%), Gaps = 21/312 (6%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    +  N W  TE  + DDL            E+   +    F ++++ LV  N
Sbjct: 63  PDIGNLRSLSIMNRWTETEFVIADDLEDVGKLKN----EKNFYRFLFTFLSAADDLVNLN 118

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
            + ++    +  +   Y   Q   EAVHS  +  I   L  ++      Y      +   
Sbjct: 119 -IDSLLSLFTQKDIHHYYFEQECIEAVHSRAYSIIQLMLFSNDQAARQEYVTSTLRSPAI 177

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
              L++ +           + A+   + + ++  ++ EG++F   FA I  L   N  V 
Sbjct: 178 LSKLEWLER----------RVAECTSIAEKYILMILIEGIFFTASFAAIAYLRVNNLFVV 227

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
             +    I RDE++H+     +       N     K    +  T+  EA  +E  +    
Sbjct: 228 TCQINNLISRDEAIHVEASCCIFK-----NYLAGPKPTTARIHTLFKEAVTVECEFLRTA 282

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
            P+    +N  +   Y+++ A+R    + + P++   + P  +   ++      NFFE R
Sbjct: 283 APRTSNIINIDAICSYVRYSADRLLRALDILPIYDEPKPPADFPLVLMSAASNTNFFERR 342

Query: 340 VTEYQQGAELKW 351
            T Y  G+    
Sbjct: 343 NTAYS-GSVSND 353


>gi|149004132|ref|ZP_01828935.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|237649545|ref|ZP_04523797.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822455|ref|ZP_04598300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|147757865|gb|EDK64875.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP14-BS69]
          Length = 320

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKTEIEEIFEWTNTNPYLQKKAEIVN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|15901045|ref|NP_345649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae TIGR4]
 gi|111657123|ref|ZP_01407908.1| hypothetical protein SpneT_02001649 [Streptococcus pneumoniae
           TIGR4]
 gi|14972661|gb|AAK75289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           pneumoniae TIGR4]
          Length = 320

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|15903110|ref|NP_358660.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae R6]
 gi|116517162|ref|YP_816517.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae D39]
 gi|148985789|ref|ZP_01818917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|148990437|ref|ZP_01821595.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|148999044|ref|ZP_01826476.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|149008157|ref|ZP_01831676.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP18-BS74]
 gi|149026429|ref|ZP_01836566.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483243|ref|ZP_02708195.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|168486506|ref|ZP_02711014.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|168491101|ref|ZP_02715244.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC0288-04]
 gi|168493105|ref|ZP_02717248.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC3059-06]
 gi|168577270|ref|ZP_02723064.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae MLV-016]
 gi|169833110|ref|YP_001694622.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae Hungary19A-6]
 gi|182684087|ref|YP_001835834.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae CGSP14]
 gi|194397329|ref|YP_002037788.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae G54]
 gi|225854653|ref|YP_002736165.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae JJA]
 gi|225856856|ref|YP_002738367.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae P1031]
 gi|225858968|ref|YP_002740478.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae 70585]
 gi|303255568|ref|ZP_07341620.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae BS455]
 gi|303260588|ref|ZP_07346554.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|303262722|ref|ZP_07348661.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|303265256|ref|ZP_07351167.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS397]
 gi|303267603|ref|ZP_07353445.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS457]
 gi|303269940|ref|ZP_07355678.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS458]
 gi|307067834|ref|YP_003876800.1| ribonucleotide reductase subunit beta [Streptococcus pneumoniae
           AP200]
 gi|307127225|ref|YP_003879256.1| ribonucleoside-diphosphate reductase subunit beta [Streptococcus
           pneumoniae 670-6B]
 gi|15458689|gb|AAK99870.1| Nonessential ribonucleoside-diP reductase 2, subunit beta, class I,
           function unknown [Streptococcus pneumoniae R6]
 gi|116077738|gb|ABJ55458.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae D39]
 gi|147755114|gb|EDK62169.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|147760396|gb|EDK67375.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP18-BS74]
 gi|147922093|gb|EDK73216.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|147924289|gb|EDK75383.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|147929260|gb|EDK80261.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae SP23-BS72]
 gi|168995612|gb|ACA36224.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172043347|gb|EDT51393.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|182629421|gb|ACB90369.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae CGSP14]
 gi|183570430|gb|EDT90958.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|183574343|gb|EDT94871.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC0288-04]
 gi|183576617|gb|EDT97145.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae CDC3059-06]
 gi|183577169|gb|EDT97697.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae MLV-016]
 gi|194356996|gb|ACF55444.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           pneumoniae G54]
 gi|225720498|gb|ACO16352.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae 70585]
 gi|225724090|gb|ACO19943.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae JJA]
 gi|225725515|gb|ACO21367.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae P1031]
 gi|301794279|emb|CBW36700.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus pneumoniae INV104]
 gi|301800116|emb|CBW32717.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus pneumoniae OXC141]
 gi|301801954|emb|CBW34682.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus pneumoniae INV200]
 gi|302597474|gb|EFL64568.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae BS455]
 gi|302636154|gb|EFL66650.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638301|gb|EFL68770.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|302640522|gb|EFL70931.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS458]
 gi|302642869|gb|EFL73174.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS457]
 gi|302645227|gb|EFL75463.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           pneumoniae BS397]
 gi|306409371|gb|ADM84798.1| Ribonucleotide reductase, beta subunit [Streptococcus pneumoniae
           AP200]
 gi|306484287|gb|ADM91156.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae 670-6B]
 gi|332074795|gb|EGI85267.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA41301]
 gi|332075112|gb|EGI85583.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA17545]
 gi|332200632|gb|EGJ14704.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA41317]
 gi|332201651|gb|EGJ15721.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA47368]
 gi|332203034|gb|EGJ17102.1| ribonucleotide reductase, small chain family protein [Streptococcus
           pneumoniae GA47901]
          Length = 320

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|325977861|ref|YP_004287577.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177789|emb|CBZ47833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 320

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 119/333 (35%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+ +E+ ++ +  
Sbjct: 7   EAINWNEIEDIIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE-- 144
           G     +++ + + V AI   +  P     L    F E+VH+ ++  I ++L        
Sbjct: 61  GGLTLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEA 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA       +   +                         E   FY+G
Sbjct: 121 IFEWTNSNDCLQKKAKIINDIYENGDALQKKV---------------ASTFLETFLFYSG 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E        F++    +
Sbjct: 166 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDNFREWMYDL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 226 LYQLYENEENYTKSLYDG--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV 282

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            M+ +       +FF      Y  G+   ++ D
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMQDD 314


>gi|327489434|gb|EGF21227.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1058]
          Length = 319

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +             F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 136 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|161622513|ref|YP_001595352.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           JS98]
 gi|160213819|gb|ABX11158.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           JS98]
          Length = 379

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 137/350 (39%), Gaps = 32/350 (9%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    E      +  W P EV +  
Sbjct: 1   MSTVFN-TTPVDVLVEPMFFGSGLGIARYDIQ--RHKVFEELCEKQLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+       A+   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQGRAPSAALQALISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS---------- 173
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +          
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEILLDEAIMKRAESIGRYYDDVIEKTRLYQNALEEY 174

Query: 174 --FTTGTKDADQEFLQDL---FVFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYI 227
             F  G K A  E ++ L          E + FY  FA   +  +    M G A+  ++I
Sbjct: 175 HEFGEGVKQAKYELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFI 234

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            RDE LHL     +I Q+++           +E +Q++  +  E    E  +A      G
Sbjct: 235 ARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEKEWAAHLFKDG 294

Query: 284 F-VGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
              GLN  +   ++ ++   R  Q GL  P+    T +P+PW+ E ++  
Sbjct: 295 TCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDAPTRHPYPWIREYLNSD 344


>gi|15675308|ref|NP_269482.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes M1 GAS]
 gi|21910586|ref|NP_664854.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS315]
 gi|28895723|ref|NP_802073.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes SSI-1]
 gi|71910937|ref|YP_282487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS5005]
 gi|94988801|ref|YP_596902.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS9429]
 gi|94992686|ref|YP_600785.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS2096]
 gi|306826388|ref|ZP_07459706.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes ATCC 10782]
 gi|13622486|gb|AAK34203.1| ribonucleotide diphosphate reductase small subunit [Streptococcus
           pyogenes M1 GAS]
 gi|21904787|gb|AAM79657.1| putative ribonucleoside-diphosphate reductase 2 beta subunit
           [Streptococcus pyogenes MGAS315]
 gi|28810972|dbj|BAC63906.1| putative ribonucleotide diphosphate reductase, small subunit
           [Streptococcus pyogenes SSI-1]
 gi|71853719|gb|AAZ51742.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS5005]
 gi|94542309|gb|ABF32358.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS9429]
 gi|94546194|gb|ABF36241.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS2096]
 gi|304431419|gb|EFM34410.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes ATCC 10782]
          Length = 319

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 118/333 (35%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+  E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ +   V AI   +  P     L    F E+VH+ ++  I ++L   +   E
Sbjct: 60  GGLTLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA           +                         E   FY+G
Sbjct: 120 IFEWTNNNEFLQEKARIINDIYANGDALQKKV---------------ASTYLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E P    + F+     +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 225 LYQLYENEEKYTKTLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            M+ +       +FF      Y  G+   +  D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313


>gi|262283137|ref|ZP_06060904.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sp. 2_1_36FAA]
 gi|262261389|gb|EEY80088.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sp. 2_1_36FAA]
          Length = 319

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 117/303 (38%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +             F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 136 -----IINEIYLNGTA-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYTLYENEEGYTETLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF  T    NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDTADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|157149762|ref|YP_001450838.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157074556|gb|ABV09239.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 319

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 117/303 (38%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +             F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 136 -----IINEIYLNGTA-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTETLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF  T    NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDTADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|149013339|ref|ZP_01834070.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP19-BS75]
 gi|147762929|gb|EDK69876.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae SP19-BS75]
          Length = 320

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKTEIEEIFEWTNTNPYLQKKAEIVN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|328945482|gb|EGG39633.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1087]
          Length = 319

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 117/303 (38%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +             F E+VH+ ++  I ++L       E+F+     P +  KA    
Sbjct: 79  KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFDWTNTNPYLQKKAE--- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  +  V  E   FY+GF   L     NK+  +AE 
Sbjct: 136 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|225860977|ref|YP_002742486.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298229749|ref|ZP_06963430.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255394|ref|ZP_06978980.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502819|ref|YP_003724759.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727952|gb|ACO23803.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238414|gb|ADI69545.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389423|gb|EGE87768.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
           [Streptococcus pneumoniae GA04375]
          Length = 320

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|221231890|ref|YP_002511042.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pneumoniae ATCC 700669]
 gi|220674350|emb|CAR68896.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus pneumoniae ATCC 700669]
          Length = 320

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  EDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|94990703|ref|YP_598803.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10270]
 gi|94544211|gb|ABF34259.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10270]
          Length = 320

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 118/333 (35%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+  E+ ++ +  
Sbjct: 7   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ +   V AI   +  P     L    F E+VH+ ++  I ++L   +   E
Sbjct: 61  GGLTLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA           +                         E   FY+G
Sbjct: 121 IFEWTNNNEFLQEKARIINNIYANGDALQKKV---------------ASTYLETFLFYSG 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E P    + F+     +
Sbjct: 166 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 226 LYQLYENEEKYTKTLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 282

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            M+ +       +FF      Y  G+   +  D
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMSDD 314


>gi|300934659|ref|ZP_07149915.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           resistens DSM 45100]
          Length = 332

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 132/367 (35%), Gaps = 51/367 (13%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M     ++P    +    V  + +     + N++   K    W+       N W+P +VP
Sbjct: 1   MTIAESVTP-PKAKYNPRVRIRPI-----NWNKVQDDKDLEVWQ---RLTANFWLPEKVP 51

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +DL  W   NGL+D ER +  R        +++ A    ++  +              
Sbjct: 52  LSNDLKDW---NGLSDIERTLTMRVFTGLTLLDTMQATVGEISQIQDAQTEHEEAVYTNI 108

Query: 121 AFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
           AF ++VH+ ++  + ++L         +        +  +    L++             
Sbjct: 109 AFMQSVHARSYSSVFSTLANTPSINAAYEWAVNNDVLQQRCRSVLEHYFGED-------- 160

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                       V   +   +  Y GF   L       +   A+  + I+RD+++H  + 
Sbjct: 161 -------PLKRKVSATLLSSVLLYAGFYLPLHFSTRGVLTNTADMIRLILRDKAVHGYYS 213

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
                Q  +EN    T E  + +  +L +   LE+ Y+ E      +GL  P   +++++
Sbjct: 214 GYKF-QRGLENHPERTAELSEFTHALLEKLFELEVLYSAELYE--PLGL-MPDVVKFVKY 269

Query: 299 IANRRCHQIGLEPLF---KYTENPFPWMSEVID-----LKKEKNFFETRVTEYQQG---- 346
            AN+    +G  P F   +   +P     E++        +  +FF    + Y  G    
Sbjct: 270 NANKALMNLGYHPHFAAEETDVSP-----EILSALTPGADENHDFFSGSGSSYIMGKAEE 324

Query: 347 -AELKWD 352
            A+  WD
Sbjct: 325 TADTDWD 331


>gi|270291189|ref|ZP_06197412.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus
           acidilactici 7_4]
 gi|304385474|ref|ZP_07367819.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus
           acidilactici DSM 20284]
 gi|270280585|gb|EFA26420.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus
           acidilactici 7_4]
 gi|304328681|gb|EFL95902.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus
           acidilactici DSM 20284]
          Length = 317

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 114/308 (37%), Gaps = 26/308 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL+ W+    L +D + ++    G     ++L + + + A+ 
Sbjct: 21  WEKLTEQFWLDTRIPISNDLSDWRE---LDEDHQWVVGHVFGGLTLLDTLQSQDGMAALR 77

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +  P     L    F E+VH+ ++  I  +L       E+F        +  K  +  
Sbjct: 78  KDVRTPHETAVLNNIQFMESVHAKSYSSIFETLNTPTEIDEIFEWSDSEEFLQNKTKFIY 137

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                   P                  +  V  E   FY+GF   L     NK+  +AE 
Sbjct: 138 DLYHDDGHPLKKK--------------ISSVFLETFLFYSGFFTPLYYLGHNKLNNVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          +      +E +      L++    E  Y H+   + 
Sbjct: 184 IKLILRDESVHGTYIGYKFQLGMKDLGENEQQELKDWMYNFLYDLYANEEKYVHKVYDQ- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
            VG        + ++ AN+    +G +PLF  TE   NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVLTFTRYNANKALMNLGQDPLFPDTEADVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEYQQGAE 348
             Y+ G  
Sbjct: 300 NGYRLGNV 307


>gi|325694009|gb|EGD35927.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK150]
          Length = 319

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 117/303 (38%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +             F E+VH+ ++  I ++L       E+F+     P +  KA    
Sbjct: 79  KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFDWTNTNPYLQKKAE--- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  +  V  E   FY+GF   L     NK+  +AE 
Sbjct: 136 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|19746348|ref|NP_607484.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS8232]
 gi|50914444|ref|YP_060416.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10394]
 gi|71903783|ref|YP_280586.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS6180]
 gi|94994624|ref|YP_602722.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10750]
 gi|139473584|ref|YP_001128300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes str. Manfredo]
 gi|19748543|gb|AAL97983.1| ribonucleotide diphosphate reductase small subunit [Streptococcus
           pyogenes MGAS8232]
 gi|50903518|gb|AAT87233.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10394]
 gi|71802878|gb|AAX72231.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS6180]
 gi|94548132|gb|ABF38178.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10750]
 gi|134271831|emb|CAM30066.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus pyogenes str. Manfredo]
          Length = 319

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 118/333 (35%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+  E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ +   V AI   +  P     L    F E+VH+ ++  I ++L   +   E
Sbjct: 60  GGLTLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA           +                         E   FY+G
Sbjct: 120 IFEWTNNNEFLQEKARIINNIYANGDALQKKV---------------ASTYLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E P    + F+     +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 225 LYQLYENEEKYTKTLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            M+ +       +FF      Y  G+   +  D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313


>gi|324993305|gb|EGC25225.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK405]
 gi|324995391|gb|EGC27303.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK678]
 gi|325697177|gb|EGD39064.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK160]
 gi|327461576|gb|EGF07907.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1]
 gi|327473300|gb|EGF18720.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK408]
          Length = 319

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +             F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  +  V  E   FY+GF   L     NK+  +AE 
Sbjct: 136 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|320546423|ref|ZP_08040738.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           equinus ATCC 9812]
 gi|320448808|gb|EFW89536.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           equinus ATCC 9812]
          Length = 320

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 119/330 (36%), Gaps = 32/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WE         W+ T +P+ +DL  W+    L+D E+ ++ +  G  
Sbjct: 10  NWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFN 147
              +++ + + V AI   +  P     L    F E+VH+ ++  I ++L        +F 
Sbjct: 64  TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEAIFE 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +   +  KA       +   +                         E   FY+GF  
Sbjct: 124 WTNKNEFLQKKAKIINDIYENGDALQKKI---------------ASTFLETFLFYSGFFT 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E       E +     +L++
Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDKQDELRDWMYDLLYQ 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF       NP   M+
Sbjct: 229 LYENEENYTKSLY--DEVGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284

Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            +       +FF      Y  G+   +K D
Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGSVEAMKDD 314


>gi|322385107|ref|ZP_08058754.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           cristatus ATCC 51100]
 gi|321270731|gb|EFX53644.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           cristatus ATCC 51100]
          Length = 321

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 112/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     ++L + + V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTLQSESGVDALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
           + +             F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAEIIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +     S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYLNGSPLEKKI---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|55821276|ref|YP_139718.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           thermophilus LMG 18311]
 gi|55823189|ref|YP_141630.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           thermophilus CNRZ1066]
 gi|116628014|ref|YP_820633.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           thermophilus LMD-9]
 gi|55737261|gb|AAV60903.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus
           thermophilus LMG 18311]
 gi|55739174|gb|AAV62815.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus
           thermophilus CNRZ1066]
 gi|116101291|gb|ABJ66437.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Streptococcus thermophilus LMD-9]
 gi|312278606|gb|ADQ63263.1| Ribonucleoside-diphosphate reductase class Ib beta subunit
           [Streptococcus thermophilus ND03]
          Length = 320

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+ +E+ ++ +  G     +++ +   V AI 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGLTLLDTMQSQTGVEAIR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P     L    F E+VH+ ++  I ++L       E+F        +  KA    
Sbjct: 79  ADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNSNKYLQTKAKIIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              +  ++                         E   FY+GF   L     NK+  +AE 
Sbjct: 139 DIYENGTALQKKV---------------ASTYLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    + F++    +L++    E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEKEQESFREWMYDLLYQLYENEELYTKSLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG        ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVMTFLRYNANKALMNLGQDPLFPDSANDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|327468920|gb|EGF14392.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK330]
          Length = 319

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 115/303 (37%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +             F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  +  V  E   FY+GF   L     NK+  +AE 
Sbjct: 136 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P     + ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLAFNELPEDEQNKLKEWMYDLLYTLYENEEGYTESLY--D 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|228476905|ref|ZP_04061550.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           salivarius SK126]
 gi|228251479|gb|EEK10624.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           salivarius SK126]
          Length = 319

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 110/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+ +E+ ++ +  G     +++ +   V AI 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGLTLLDTMQSQTGVEAIR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P     L    F E+VH+ ++  I ++L       E+F        +  KA    
Sbjct: 79  ADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNSNEYLQTKAKIIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              +  +                          E   FY+GF   L     NK+  +AE 
Sbjct: 139 DIYENGTPLQKKV---------------ASTYLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    + F++    +L++    E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQESFREWMYDLLYQLYENEELYTKSLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG        ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVMTFLRYNANKALMNLGQDPLFPDSANDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|324990559|gb|EGC22495.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK353]
          Length = 319

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +             F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  +  V  E   FY+GF   L     NK+  +AE 
Sbjct: 136 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLSFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|125717616|ref|YP_001034749.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK36]
 gi|323352633|ref|ZP_08087603.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis VMC66]
 gi|125497533|gb|ABN44199.1| Ribonucleoside-diphosphate reductase 2, beta subunit, putative
           [Streptococcus sanguinis SK36]
 gi|322121669|gb|EFX93415.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis VMC66]
 gi|325688330|gb|EGD30349.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK72]
 gi|325690076|gb|EGD32080.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK115]
 gi|332363056|gb|EGJ40843.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK355]
          Length = 319

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +             F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  +  V  E   FY+GF   L     NK+  +AE 
Sbjct: 136 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|269123322|ref|YP_003305899.1| Ribonucleoside-diphosphate reductase [Streptobacillus moniliformis
           DSM 12112]
 gi|268314648|gb|ACZ01022.1| Ribonucleoside-diphosphate reductase [Streptobacillus moniliformis
           DSM 12112]
          Length = 333

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 139/326 (42%), Gaps = 18/326 (5%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           ++ +    + N L    Y      +       W+ TE     D+  W S   L+ + R  
Sbjct: 2   EKKIYKAVNWNTLDN-DYVEV--FWEQNLRQFWIDTEYIPSKDIDSWHS---LSPEMRET 55

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
            K+ LG     ++L ++  +  I  H+ + +CR  L      E++H+ ++  I T++   
Sbjct: 56  YKKVLGGLTLLDTLQSHTGMPKIIDHIESLQCRSVLSYMCMMESIHAKSYSTIFTTVAST 115

Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
           E   E+F   ++   +  KAN   +Y Q L++P       +A    +    V  V  E  
Sbjct: 116 EEINEIFRWVQDNQYLQFKANKIDEYYQCLNNP-------NATPREIYMALVASVFLESY 168

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            FY+GF   L L    +MV  ++  + I+ DES+H  F   +  +I  E   +  +  ++
Sbjct: 169 LFYSGFFLPLWLSGHGQMVASSDIIKKIIADESIHGVFVGKLAQEIFEEMSFVEKESVKK 228

Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
           +   + +E    E+ +  E      VGL +   ++Y+++  N+    +G +  F+  E  
Sbjct: 229 EIMNLFYELYENELKFTDEIYSD--VGLTSE-VKEYIRYNGNKALMNLGFKEEFEIKEVN 285

Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQ 345
              ++ +     + +FF  + T Y++
Sbjct: 286 AIVLNGLNVETTQHDFFSKKSTNYEK 311


>gi|38234491|ref|NP_940258.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200754|emb|CAE50457.1| ribonucleoside-diphosphate reductase beta chain 2 [Corynebacterium
           diphtheriae]
          Length = 341

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/339 (17%), Positives = 119/339 (35%), Gaps = 39/339 (11%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+    K    W+       N W+P +VP+ +DL  W++   +T   R ++ R     
Sbjct: 25  NWNRTQDAKDNEVWQ---RLTANFWLPEKVPLSNDLPTWRT---MTPVYRELVTRTFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              ++L A+   ++          +      AF +AVH+ ++  + +++     E+ + Y
Sbjct: 79  TLLDTLQASVGEISQIPDAHTEHEQAVYANIAFMQAVHARSYSSVFSTMCSS-TEIDDAY 137

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
               S       A +  +                       V   +   +  Y GF   L
Sbjct: 138 TWAISNPLLQRRATRVIEHYYGSD------------PLKRKVASTLLSSLLLYAGFYLPL 185

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L    K++  A+  + I+RD+++H  +      Q  +E       E  + + ++  E  
Sbjct: 186 WLSTRGKLMNTADMIRLILRDKAVHGYYSGYK-YQRGLELKPERANEMAEFTYSLCDELL 244

Query: 270 LLEIAYAHETMP-----KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
            +E AY  +            GL       ++ + A++    +G EP ++        +S
Sbjct: 245 DMEKAYTADLYAPADQANALEGLTLDGVMSFVYYNADKALMNLGYEPAYEEQA---AHVS 301

Query: 325 EVIDL------KKEKNFFETRVTEYQQGAELK-----WD 352
             I         +  +FF    + Y  G   +     WD
Sbjct: 302 PEIIAALTPESNETHDFFSGSGSAYIIGTAEETTEEDWD 340


>gi|261885428|ref|ZP_06009467.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 282

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 122/295 (41%), Gaps = 20/295 (6%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQLLP-LKYGWAWEKYLSACNNHW-----MPTEV 59
               I        ++D+++           P  KY WA    L    + W      P EV
Sbjct: 2   NRKKIYNPSSNETLNDRKVFGGNPHGILTSPKAKYTWA----LKLLGSLWKQIPGFPKEV 57

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
              DD+  +     LT  ++ M         S +S   NN+   I  +++ PE    L R
Sbjct: 58  DTTDDVRDYAC--NLTTAKKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAILAR 115

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
           QA+EEA HS ++  ++ ++  +   ++ M +    +  K ++     + L+         
Sbjct: 116 QAYEEANHSKSYAVMVEAICDNTDLIYEMEKYDDVLRKKNDYISSVYEELAGEVTDEKL- 174

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
                      V   + EG++FY+GF  I +L RA KM+G A+  ++I RDE  HL    
Sbjct: 175 -------LLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQ 227

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
           ++IN ++ E P L+T E + K   M  +A  LEI +         +G      E+
Sbjct: 228 NMINSVRKERPDLFTSEVEAKIYEMFKKAGDLEIEWGKYITGNQIMGFTDDIIEE 282


>gi|288904913|ref|YP_003430135.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus
           gallolyticus UCN34]
 gi|306830970|ref|ZP_07464132.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|288731639|emb|CBI13196.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus
           gallolyticus UCN34]
 gi|304426993|gb|EFM30103.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 320

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 119/333 (35%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+ +E+ ++ +  
Sbjct: 7   EAINWNEIEDIIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE-- 144
           G     +++ + + V AI   +  P     L    F E+VH+ ++  I ++L        
Sbjct: 61  GGLTLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEA 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA       +   +                         E   FY+G
Sbjct: 121 IFEWTNSNDYLQKKAKIINDIYENGDALQKKV---------------ASTFLETFLFYSG 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E        F++    +
Sbjct: 166 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDNFREWMYDL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 226 LYQLYENEENYTKSLYDG--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV 282

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            M+ +       +FF      Y  G+   ++ D
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMQDD 314


>gi|312862767|ref|ZP_07723007.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           vestibularis F0396]
 gi|322516573|ref|ZP_08069487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           vestibularis ATCC 49124]
 gi|311101627|gb|EFQ59830.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           vestibularis F0396]
 gi|322124843|gb|EFX96267.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           vestibularis ATCC 49124]
          Length = 320

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 109/303 (35%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+  E+ ++ +  G     +++ +   V AI 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSAKEKDLVGKVFGGLTLLDTMQSQTGVEAIR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P     L    F E+VH+ ++  I ++L       E+F        +  KA    
Sbjct: 79  ADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNSNKYLQTKAKIIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              +  +                          E   FY+GF   L     NK+  +AE 
Sbjct: 139 DIYENGTPLQKKV---------------ASTYLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    + F++    +L++    E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQESFREWMYDLLYQLYENEELYTKSLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG        ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVMTFLRYNANKALMNLGQDPLFPDSANDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|332361651|gb|EGJ39455.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1056]
 gi|332365967|gb|EGJ43723.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           sanguinis SK1059]
          Length = 319

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 115/303 (37%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+  E+ ++ +  G     ++L + + V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +             F E+VH+ ++  I ++L       E+F        +  KA    
Sbjct: 79  KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNSYLQKKAE--- 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  +  V  E   FY+GF   L     NK+  +AE 
Sbjct: 136 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ ++    +L+     E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|9632793|ref|NP_049841.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage T4]
 gi|1172940|sp|P11156|RIR2_BPT4 RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Protein B2; AltName: Full=Ribonucleotide
           reductase
 gi|5354417|gb|AAD42624.1|AF158101_211 NrdB aerobic NDP reductase, small subunit [Enterobacteria phage T4]
 gi|15342|emb|CAA27757.1| small subunit B2 [Enterobacteria phage T4]
 gi|299780589|gb|ADJ39951.1| aerobic NDP reductase small subunit [Enterobacteria phage T4T]
          Length = 388

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 132/360 (36%), Gaps = 41/360 (11%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V ++ M            +   ++    E      +  W P EV +  
Sbjct: 1   MSTVFN-TNPVDVLNEPMFFGSGLGLARYDIQ--RHRVFEELIERQISFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +          
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLVKTREWENAKDMV 174

Query: 184 EFLQD------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN-KMV 218
           E+ +D                                E + FY  FA   +  +    M 
Sbjct: 175 EYYKDQGLILADKDVEQRAKRDLMKSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIME 234

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIA 274
           G A+  ++I RDE LHL     +I Q++            +E +Q++  +  E    E  
Sbjct: 235 GNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVKIAQECEQEAVDIFMEVNRQEKD 294

Query: 275 YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLKK 331
           +A      G   GLN  S   ++ ++   R  Q GL  P+     ++P+PW+ E ++   
Sbjct: 295 WAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYLNSDN 354


>gi|322372696|ref|ZP_08047232.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. C150]
 gi|321277738|gb|EFX54807.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           sp. C150]
          Length = 319

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 110/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+ +E+ ++ +  G     +++ +   V AI 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGLTLLDTMQSQTGVEAIR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P     L    F E+VH+ ++  I ++L       ++F        +  KA    
Sbjct: 79  ADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEDIFEWTNSNEYLQTKAKIIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              +  +                          E   FY+GF   L     NK+  +AE 
Sbjct: 139 DIYENGTPLQKKV---------------ASTFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    + F++    +L+E    E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQESFREWMYDLLYELYENEELYTKSLYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG        ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 -VGWT-EEVMTFLRYNANKALMNLGQDPLFPDSANDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|149408186|ref|YP_001294620.1| hypothetical protein ORF027 [Pseudomonas phage PA11]
          Length = 322

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 113/325 (34%), Gaps = 30/325 (9%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
             Y  A +      +  W   E+ ++ D+     +  +T+ E   +   L  F   E + 
Sbjct: 13  FDYPEAIQFAKVQSSIFWTDDEINVEKDIQD--IRVNMTEAEAHGVITTLRLFTLYELVA 70

Query: 97  ANNIVL-AIYRHLSNPECRQYLLRQAF-EEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
             +  L  + +    P+  +      F E  VH+  +  I  +L L+  E +  Y   P 
Sbjct: 71  GRDYWLGRVLKTFPRPDIERMAATFGFFELNVHAPFYNKINEALMLNTDEFYLAYVNDPI 130

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  +     +    P ++ G               + + EG   Y+ FA +      
Sbjct: 131 LKERMEFVDSLVEE-DDPLYSLG--------------AFSMVEGAVLYSSFAFLKHFQAK 175

Query: 215 NK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIE---NPHLWTKEFQQKSRTMLHEAT 269
            K  ++ +     + +RDE+LH   G  + N +K E            +       H   
Sbjct: 176 GKNKLMNVVRGINFSVRDENLHCEGGAWLYNTLKQEIKSEGGYINPNLEYDLANCAHTIA 235

Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVI 327
             E         KG   G+ A   + +++   N    Q+G+EP+F+ + N    W  + I
Sbjct: 236 EHEFRIVDMIFEKGEMEGITAEQMKTFVKSRVNICLAQLGIEPVFEVSNNIVAEWFYDGI 295

Query: 328 DLKKEKNFFETRVTEYQQGAELKWD 352
           +     +FF      Y +     WD
Sbjct: 296 NGVMFHDFFSGIGNSYNRS----WD 316


>gi|329117318|ref|ZP_08246035.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           parauberis NCFD 2020]
 gi|326907723|gb|EGE54637.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           parauberis NCFD 2020]
          Length = 321

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 119/327 (36%), Gaps = 30/327 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L   E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLPAKEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ +   V AI   +  P     L    F E+VH+ ++  I ++L   +   E
Sbjct: 60  GGLTLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F+       +  KA       +   +                         E   FY+G
Sbjct: 120 IFDWTNSNEFLQNKAKIINDIYENGDALQKKV---------------ASTYLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E      ++F++    +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEKQEDFKEWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y      +  VG        ++++ AN+    +G +PLF       NP  
Sbjct: 225 LYQLYENEENYTKSLYDQ--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE 348
            M+ +       +FF      Y  G+ 
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSV 307


>gi|297243045|ref|ZP_06926983.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD]
 gi|296889256|gb|EFH27990.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD]
          Length = 364

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 111/331 (33%), Gaps = 35/331 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N ++  K    W        N W+P +VP+ +D+  W+S   LTD ER    R     
Sbjct: 55  NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 108

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++  A    L    H      +      AF +++H+ ++  I ++L   E   E + 
Sbjct: 109 TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSEEIDEAYR 168

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +    L   ++                      +   +   +  Y GF  
Sbjct: 169 WAVGNDVLQQRVTTVLCEYESED---------------PLKRKIAATMLSSLLLYAGFYL 213

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L      KM+  A+  + I+RD+++H  +      +          K  ++ +  +L  
Sbjct: 214 PLYFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDT 273

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              LE+ Y+ +         +        ++ AN+    +G    +   E     +S  I
Sbjct: 274 LYDLEVEYSGQIYEGFDFHDDVFDFV---RYNANKALMNLGYPAKYSEEE---THVSPEI 327

Query: 328 ------DLKKEKNFFETRVTEYQQGAELKWD 352
                    +  +FF    + Y  G  ++ D
Sbjct: 328 LAALSPAADENHDFFSGSGSSYIMGKSVETD 358


>gi|22536982|ref|NP_687833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae 2603V/R]
 gi|25010891|ref|NP_735286.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae NEM316]
 gi|76788606|ref|YP_329564.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae A909]
 gi|76799231|ref|ZP_00781405.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 18RS21]
 gi|77405557|ref|ZP_00782648.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae H36B]
 gi|77408849|ref|ZP_00785576.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae COH1]
 gi|77413113|ref|ZP_00789313.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 515]
 gi|22533837|gb|AAM99705.1|AE014229_6 ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           agalactiae 2603V/R]
 gi|23095270|emb|CAD46480.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563663|gb|ABA46247.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           agalactiae A909]
 gi|76585414|gb|EAO61998.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 18RS21]
 gi|77160814|gb|EAO71925.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 515]
 gi|77172535|gb|EAO75677.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae COH1]
 gi|77175864|gb|EAO78642.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae H36B]
 gi|319744839|gb|EFV97177.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae ATCC 13813]
          Length = 319

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/327 (19%), Positives = 116/327 (35%), Gaps = 30/327 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+  E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAQEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ +   V AI   +  P     L    F E+VH+ ++  I ++L       E
Sbjct: 60  GGLTLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEE 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA          ++                         E   FY+G
Sbjct: 120 IFEWTNNNEFLQEKARIINDIYANGNALQKKV---------------ASTYLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E P    + F+     +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 225 LYQLYENEEKYTKTLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE 348
            M+ +       +FF      Y  G+ 
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSV 307


>gi|306833073|ref|ZP_07466204.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           bovis ATCC 700338]
 gi|304424782|gb|EFM27917.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           bovis ATCC 700338]
          Length = 320

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 120/333 (36%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+ +E+ ++ +  
Sbjct: 7   EAINWNEIEDIIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE-- 144
           G     +++ + + V AI   +  P     L    F E+VH+ ++  I ++L        
Sbjct: 61  GGLTLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEA 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA       +  ++                         E   FY+G
Sbjct: 121 IFEWTNSNDYLQKKAKIINDIYENGNALQKKV---------------ASTFLETFLFYSG 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E        F++    +
Sbjct: 166 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDNFREWMYDL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 226 LYQLYENEENYTKSLYDG--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV 282

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            M+ +       +FF      Y  G+   ++ D
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMQDD 314


>gi|308235083|ref|ZP_07665820.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella
           vaginalis ATCC 14018]
 gi|311115217|ref|YP_003986438.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella
           vaginalis ATCC 14019]
 gi|310946711|gb|ADP39415.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella
           vaginalis ATCC 14019]
          Length = 364

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 111/331 (33%), Gaps = 35/331 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N ++  K    W        N W+P +VP+ +D+  W+S   LTD ER    R     
Sbjct: 55  NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 108

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++  A    L    H      +      AF +++H+ ++  I ++L   E   E + 
Sbjct: 109 TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSEEIDEAYR 168

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +    L   ++                      +   +   +  Y GF  
Sbjct: 169 WAVGNDVLQQRVTTVLCEYESED---------------PLKRKIAATMLSSLLLYAGFYL 213

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L      KM+  A+  + I+RD+++H  +      +          K  ++ +  +L  
Sbjct: 214 PLYFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDT 273

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              LE+ Y+ +         +        ++ AN+    +G    +   E     +S  I
Sbjct: 274 LYDLEVEYSGQIYEGFDFHDDVFDFV---RYNANKALMNLGYPAKYSEEE---THVSPEI 327

Query: 328 ------DLKKEKNFFETRVTEYQQGAELKWD 352
                    +  +FF    + Y  G  ++ D
Sbjct: 328 LAALSPAADENHDFFSGSGSSYIMGKSVETD 358


>gi|332686050|ref|YP_004455824.1| ribonucleotide reductase of class Ib (aerobic), subunit beta
           [Melissococcus plutonius ATCC 35311]
 gi|332370059|dbj|BAK21015.1| ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Melissococcus plutonius ATCC 35311]
          Length = 323

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 110/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W++   L++ E+       G     +++ + + +  + 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWRT---LSELEKTTFAHVFGGLTLLDTVQSESGIDQLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
           +    P     L    F E+VH+ ++  I ++L   +   E+FN       +  KA    
Sbjct: 79  KDARTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFNWIDTNQQLQYKAKRVN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  +                          V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYKHGKPLQKKV---------------ANVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +      +           E +     +L+E    E  Y  E     
Sbjct: 184 IKLIIRDESVHGTYIGYKFQRGFNGLEEQEQDELKNWMYDLLYELYENEEKYTEELY--D 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            +G      + ++++ AN+    +G+ PLF       NP   M+ +       +FF    
Sbjct: 242 PLGWT-EDVKIFLRYNANKALMNLGMNPLFPDTANDVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|222153355|ref|YP_002562532.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           uberis 0140J]
 gi|222114168|emb|CAR42683.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus uberis 0140J]
          Length = 319

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 114/322 (35%), Gaps = 30/322 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+  E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAQEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ +   V AI   +  P     L    F E+VH+ ++  I ++L   +   E
Sbjct: 60  GGLTLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA           +                         E   FY+G
Sbjct: 120 IFEWTNNNEFLQKKAKIINDIYANGDALQKKV---------------ASTYLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E      + F++    +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDKQESFREWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 225 LYQLYENEEEYTKTLY--DPVGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEY 343
            M+ +       +FF      Y
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGY 302


>gi|259907588|ref|YP_002647944.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           pyrifoliae Ep1/96]
 gi|224963210|emb|CAX54694.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
           pyrifoliae Ep1/96]
 gi|283477430|emb|CAY73346.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
           pyrifoliae DSM 12163]
          Length = 319

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 117/330 (35%), Gaps = 31/330 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W S   L  +++ +  R        
Sbjct: 10  NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWNS---LNAEQQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
           +++       A+            +   +F EAVH+ ++  I ++L         +    
Sbjct: 67  DTIQNTLGAPALMADALTQHEEAVMSNISFMEAVHARSYSSIFSTLCNTSDVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           +   +  KA   LQ+                            V  E   FY+GF   + 
Sbjct: 127 DNAPLQGKAQIILQHYYHNDPLKKKI---------------ASVFLESFLFYSGFYLPVY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I++DE++H  +      +   +   L  +E QQ +  +L E   
Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPLRKEELQQFAIELLLELYE 231

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
            E+AY         VG      ++++ + AN+    +G E LF       NP    +   
Sbjct: 232 NELAYTEALYAG--VGW-QEDVKKFLHYNANKALMNLGYEALFPADMTDVNPAILAALSP 288

Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
           +  +  +FF    + Y  G  +      WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTQDEDWD 318


>gi|283782686|ref|YP_003373440.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella
           vaginalis 409-05]
 gi|283441437|gb|ADB13903.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella
           vaginalis 409-05]
          Length = 359

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 111/331 (33%), Gaps = 35/331 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N ++  K    W        N W+P +VP+ +D+  W+S   LTD ER    R     
Sbjct: 50  NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 103

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++  A    L    H      +      AF +++H+ ++  I ++L   E   E + 
Sbjct: 104 TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSEEIDEAYR 163

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +    L   ++                      +   +   +  Y GF  
Sbjct: 164 WAVGNDVLQQRVTTVLCEYESED---------------PLKRKIAATMLSSLLLYAGFYL 208

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L      KM+  A+  + I+RD+++H  +      +          K  ++ +  +L  
Sbjct: 209 PLYFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDT 268

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              LE+ Y+ +         +        ++ AN+    +G    +   E     +S  I
Sbjct: 269 LYDLEVEYSGQIYEGFDFHDDVFDFV---RYNANKALMNLGYPAKYSEEE---THVSPEI 322

Query: 328 ------DLKKEKNFFETRVTEYQQGAELKWD 352
                    +  +FF    + Y  G  ++ D
Sbjct: 323 LAALSPAADENHDFFSGSGSSYIMGKSVETD 353


>gi|329767978|ref|ZP_08259489.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341]
 gi|328838463|gb|EGF88071.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341]
          Length = 322

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 111/308 (36%), Gaps = 13/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE  +  D+  W     L D ER   K+ L      ++   +  +  +
Sbjct: 16  YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKEREAYKKVLAGLTGLDTQQGDKGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H  +   +         E +H+ ++  I TSL   +   + +   VPS      +  +
Sbjct: 74  SLHTEDMRKQAVYSFMGMMEQIHAKSYSTIFTSLIPSQETDYLLDEWVPSNPE-LQFKAK 132

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
             +      F       D    +   V  V  E   FY+GF   L L    K+    E  
Sbjct: 133 LIEDYYMKLFKPEVPTYDLYMAR---VASVFLESYIFYSGFFYPLYLAGQGKVTTSGEII 189

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DE++H +F      ++         +  +++   +L +    E+ Y  +      
Sbjct: 190 RKILLDETIHGSFTGFDAQELFKTLTPEEQERAEKEMYKLLLDLYENELKYTKDIY--DE 247

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
           +GL     + Y+++ ANR    +G    F+  E NP   +   ++   +  +FF  +   
Sbjct: 248 IGL-YEDVKDYVEYNANRALANLGYPGYFEDKEINPI--IENAMNTNTKNHDFFSVKGDG 304

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 305 YVVSMNVE 312


>gi|32709423|gb|AAP86730.1| NrdB [Enterobacteria phage RB27]
          Length = 392

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 133/364 (36%), Gaps = 45/364 (12%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    +      +  W P EV +  
Sbjct: 1   MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +       AD 
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKTRYWENAKADI 174

Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
           E+ ++                                    E + FY  FA   +  +  
Sbjct: 175 EYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234

Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
             M G A+  ++I RDE LHL     +I Q++            +E +Q++  +  E   
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDQWVKIAQECEQEAVDIFMEVNR 294

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVI 327
            E  +A      G   GLN  S   ++ ++   R  Q GL  P+     ++P+PW+ E +
Sbjct: 295 QEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYL 354

Query: 328 DLKK 331
           +   
Sbjct: 355 NSDN 358


>gi|309800432|ref|ZP_07694593.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           infantis SK1302]
 gi|308115948|gb|EFO53463.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           infantis SK1302]
          Length = 319

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 115/303 (37%), Gaps = 28/303 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L++ E+ ++ +  G     +++ +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       E+F      P +  KA    
Sbjct: 79  ADIRTPHEEAVYN-IQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPYLQKKAE--- 134

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                + +  +  GT         +  V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 135 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 182

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ +     +L+     E  Y        
Sbjct: 183 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKDWMYDLLYTLYENEEGYTESLYDG- 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 242 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 298

Query: 341 TEY 343
             Y
Sbjct: 299 NGY 301


>gi|227502192|ref|ZP_03932241.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
 gi|227077016|gb|EEI14979.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
           49725]
          Length = 337

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 119/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D   W   + +   ER +  R     
Sbjct: 28  NWNRIWDDKDLEVWN---RLTSNFWLPEKVPLSNDRNDW---SCMDPAERDLTIRVFTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    ++  +              AF +AVH+ ++  I ++L   E   + + 
Sbjct: 82  TLLDTVQATVGEISQIQDARTEHEEAVYTNIAFMQAVHARSYSSIFSTLASTEEIEKSYA 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  +A   + +                         V   +   +  Y GF  
Sbjct: 142 WAVDNPVLQQRATSVMVHYYGDD---------------PLKRKVASTLLSSLLLYAGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L      K+   A+  + I+RD+++H  +      +          +E ++ +  ++ +
Sbjct: 187 PLHFSVHGKLTNTADMIRLILRDKAVHGYYSGYKFQRGLDHATEARREEMREFTFDLVRK 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE+ Y+ E       GL       ++++ AN+    +G   LF Y E   NP    +
Sbjct: 247 LYDLEMRYSGELYEPY--GL-MDDVATFVRYNANKALMNLGYPNLFPYEECQVNPKILAA 303

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK-----WD 352
                 +  +FF    + Y  G  ++     WD
Sbjct: 304 LTPGSDENHDFFSGSGSSYIIGKAVETSDADWD 336


>gi|228475302|ref|ZP_04060026.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           hominis SK119]
 gi|228270678|gb|EEK12092.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           hominis SK119]
          Length = 322

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 119/308 (38%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   LT+DE+   KR L      ++  A++ +  I
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LTEDEKNTFKRALAGLTGLDTHQADDGMPLI 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H ++   +         E +H+ ++ +I T+L       + +   V            
Sbjct: 73  MLHTTDLRKKAVYSFMQMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPH----LKY 128

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            +  + S       K+A         V  V  E   FY+GF   L L    KM    E  
Sbjct: 129 KSDKIISNYHKLWGKEASIFDQYMARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      ++  ++   +L E    E++Y H       
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSENEKQKADKEMYKLLEELYKNEVSYTHMLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
           +GL       Y+Q+  N+    +G EP F+  E NP   +   +D   K  +FF  +   
Sbjct: 247 IGLT-EDVLNYVQYNGNKALSNLGFEPYFEEKEFNPI--IENALDTSTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YTLALNVE 311


>gi|313884792|ref|ZP_07818546.1| ribonucleoside-diphosphate reductase, beta subunit [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619991|gb|EFR31426.1| ribonucleoside-diphosphate reductase, beta subunit [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 363

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 107/303 (35%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L+  E+ M+ +  G     +++ +    + + 
Sbjct: 23  WEKLTEQFWLDTRIPVSNDLDDWR---RLSKAEQDMVGKVFGGLTLLDTVQSEQGAIVLL 79

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
                   R  L    F E+VH+ ++  I  +L  +     +F        I  K++   
Sbjct: 80  PDARTSHERSVLSNIHFMESVHAKSYSTIFITLNTNAEIDAIFEWTDTHELIQFKSDKIN 139

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  QT +                       V+ E   FY+GF   L     NK+  +AE 
Sbjct: 140 RIYQTGTPLQKK---------------AASVLLESFLFYSGFYAPLWYLGNNKLPNVAEI 184

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +                 +E +Q    +  E    E  Y        
Sbjct: 185 IKLILRDESVHGTYIGYKFQLGYNALSETDQEELKQWVFNLCFELYSNEEKYTSYIY--D 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRV 340
            +G        ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 ELGWT-EEVNTFVRYNANKALQNLGFDPLFADTAEDVNPIV-MNGISTGTSNHDFFSQVG 300

Query: 341 TEY 343
             Y
Sbjct: 301 NGY 303


>gi|328957625|ref|YP_004375011.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
 gi|328673949|gb|AEB29995.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
          Length = 320

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 117/318 (36%), Gaps = 28/318 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WE         W  T +P+ +DL  W     L  +E+ M+ +  G  
Sbjct: 9   NWNNIEDMIDKLTWE---KLVEQFWTDTRIPLSNDLDDW---ARLPKNEKDMVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V ++ + +             F E++H+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTLQSQDGVQSLKQSIRTQHEEAVYNNIQFMESMHAKSYSAIFSTLNSKLEIDEIFQ 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA+         +                       V+ E   FY+GF  
Sbjct: 123 WTNTDELLQLKASTINDIYHNGTDLQRKV---------------ASVMLESFLFYSGFFA 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          + P    +E +  +  +L +
Sbjct: 168 PLHYLGNNKLPNVAEIIKLILRDESVHGTYIGYKFQIAFNQLPDDEKEEIKNWTYELLFK 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325
               E+ YA        +G      + ++++ AN+    +G +PLF  T N      M+ 
Sbjct: 228 LYQNEVKYAEYLY--DEIGWT-ERVKVFLRYNANKALQNLGFDPLFPDTANDVDPVIMNG 284

Query: 326 VIDLKKEKNFFETRVTEY 343
           +       +FF      Y
Sbjct: 285 ISTGTSNHDFFSQVGNGY 302


>gi|314936969|ref|ZP_07844316.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           hominis subsp. hominis C80]
 gi|313655588|gb|EFS19333.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           hominis subsp. hominis C80]
          Length = 322

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 119/308 (38%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   LT+DE+   KR L      ++  A++ +  I
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LTEDEKNTFKRALAGLTGLDTHQADDGMPLI 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H ++   +         E +H+ ++ +I T+L       + +   V            
Sbjct: 73  MLHTTDLRKKAVYSFMQMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPH----LKY 128

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            +  + S       K+A         V  V  E   FY+GF   L L    KM    E  
Sbjct: 129 KSDKIISNYHKLWGKEASIFDQYMARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      ++  ++   +L E    E++Y H       
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSENEKQKADKEMYKLLEELYKNEVSYTHMLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
           +GL       Y+Q+  N+    +G EP F+  E NP   +   +D   K  +FF  +   
Sbjct: 247 IGLT-EDVLNYVQYNGNKALSNLGFEPYFEEKEFNPI--IENALDTSTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YTLALNVE 311


>gi|77410697|ref|ZP_00787056.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae CJB111]
 gi|77163233|gb|EAO74185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae CJB111]
          Length = 319

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 116/327 (35%), Gaps = 30/327 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+  E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAQEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ +   + AI   +  P     L    F E+VH+ ++  I ++L       E
Sbjct: 60  GGLTLLDTMQSETGIEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEE 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA          ++                         E   FY+G
Sbjct: 120 IFEWTNNNEFLQEKARIINDIYANGNALQKKV---------------ASTYLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E P    + F+     +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 225 LYQLYENEEKYTKTLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE 348
            M+ +       +FF      Y  G+ 
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSV 307


>gi|328768069|gb|EGF78116.1| hypothetical protein BATDEDRAFT_37293 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 356

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 107/312 (34%), Gaps = 8/312 (2%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
           +  D+ +L        L P+++   W+ Y +   N W   EV M DDL  ++    L+  
Sbjct: 13  DTTDEPLLKPNPRRFVLFPIQFNEIWQAYKNLEANFWSAEEVEMSDDLNGFEQ---LSRK 69

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E+ ++ +          L    I+      +  PE R +   Q  ++ +HS     I+  
Sbjct: 70  EQSLMLQITSILCMGCGLNNEAILSRYSDEIQIPEARCFFGFQLMQKNIHSELSMVILDM 129

Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
               E +  ++   +  + ++  W       ++        +       Q       + +
Sbjct: 130 FSESEKQRDDLLDVIQQLPSRTMWTEWARTHMTRSEEPFALRVTSLAIFQA-IHQVSLRD 188

Query: 198 GMWFYTGF---AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
            + F  G       ++   ++ + G+      I  D+  +L+F   + + +         
Sbjct: 189 IIAFIAGPETSTLPVTSSESHLLHGVVHAMHKIHHDQLQYLSFLALIQSNLVRRADTQLV 248

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
               + +    H         +   +      +   + +  ++F+ +     +G   ++ 
Sbjct: 249 HLMARAAVAAEHTLIDDVFNLSTGNILLCGKIVPKEALKGRIEFLTDMCLTTMGYPAMYH 308

Query: 315 YTENPFPWMSEV 326
             ++P PW+S +
Sbjct: 309 V-QDPIPWISVL 319


>gi|291290450|dbj|BAI83245.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
           AR1]
          Length = 392

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 133/364 (36%), Gaps = 45/364 (12%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    +      +  W P EV +  
Sbjct: 1   MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +       AD 
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKTRYWENAKADI 174

Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
           E+ ++                                    E + FY  FA   +  +  
Sbjct: 175 EYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234

Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
             M G A+  ++I RDE LHL     +I Q++            +E +Q++  +  E   
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDQWVKIAQECEQEAVDIFMEVNR 294

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVI 327
            E  +A      G   GLN  S   ++ ++   R  Q GL  P+     ++P+PW+ E +
Sbjct: 295 QEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYL 354

Query: 328 DLKK 331
           +   
Sbjct: 355 NSDN 358


>gi|190896432|gb|ACE96729.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896434|gb|ACE96730.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896436|gb|ACE96731.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896438|gb|ACE96732.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896440|gb|ACE96733.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896444|gb|ACE96735.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896446|gb|ACE96736.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896448|gb|ACE96737.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896450|gb|ACE96738.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896452|gb|ACE96739.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896454|gb|ACE96740.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896456|gb|ACE96741.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896458|gb|ACE96742.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896460|gb|ACE96743.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896462|gb|ACE96744.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896464|gb|ACE96745.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896466|gb|ACE96746.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896468|gb|ACE96747.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896470|gb|ACE96748.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896472|gb|ACE96749.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896474|gb|ACE96750.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896476|gb|ACE96751.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896478|gb|ACE96752.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896482|gb|ACE96754.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896484|gb|ACE96755.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896486|gb|ACE96756.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896488|gb|ACE96757.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896492|gb|ACE96759.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896494|gb|ACE96760.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896496|gb|ACE96761.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896498|gb|ACE96762.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896500|gb|ACE96763.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896502|gb|ACE96764.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896504|gb|ACE96765.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896506|gb|ACE96766.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 213

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 105/237 (44%), Gaps = 27/237 (11%)

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  W+    LT DE+  I   L FFA+S+ +V  NI     + +   E R +   Q   
Sbjct: 1   DLGHWE---NLTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS  +  ++ +   D  E   LF+    VP +  KA WAL++              D
Sbjct: 58  ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWI-------------D 104

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             + F + L   +   EG++F   F  I  L +   M G+    + I RDE LH +F   
Sbjct: 105 GGESFAERLIA-FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
           + + ++ +         +++ + ++ EA  +E  +  +++P   VG+N     QY++
Sbjct: 164 LYSLLRKKLS-------EERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213


>gi|149277655|ref|ZP_01883795.1| ribonucleotide-diphosphate [Pedobacter sp. BAL39]
 gi|149231343|gb|EDM36722.1| ribonucleotide-diphosphate [Pedobacter sp. BAL39]
          Length = 327

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 129/307 (42%), Gaps = 17/307 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE     D+  WKS   L+ + + + KR LG     ++L ++  +  +
Sbjct: 20  FWEQNLRQFWVDTEYIPSKDIDSWKS---LSPEIQQVYKRALGGLTLLDTLQSHTGMPKL 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+   + +  L      EA+H+ ++  I T++       ELF+       +  KA+  
Sbjct: 77  LDHIDGLQNKAVLSFMCMMEAIHAKSYSTIFTTVNSTPEINELFDWVENNKLLQFKASTI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +Y + L  P  +                  V+ E   FY+GF   L L    +MV  A+
Sbjct: 137 DKYYRALDVPKVSNEVL-------FMGLAASVLLESFLFYSGFFMPLWLAGQGQMVASAD 189

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+ DES+H  F   +   +  + P+   ++ + K   +L E    E+ Y  E    
Sbjct: 190 IIKKIVADESIHGVFVGLLAQDVYKKLPNP--EKCKAKLEALLMELYENELKYTDELY-- 245

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
             VGL A   ++Y+++ AN+    +G E LF+        ++ +     + +FF  + T 
Sbjct: 246 TEVGLTAE-VKEYVRYNANKAMMNLGFEELFEVKPINAIVLNGLNVETTQHDFFSKKSTN 304

Query: 343 YQQGAEL 349
           Y++  E+
Sbjct: 305 YEKSMEV 311


>gi|255018022|ref|ZP_05290148.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL F2-515]
          Length = 267

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 15/266 (5%)

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDE 142
            +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    ++
Sbjct: 2   IIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQ 60

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
             +F + R  P+I  +    +       +        +   E L    +   + EG+ FY
Sbjct: 61  NRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFY 112

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           +GFA   +L R NKM G  +   +I RDE  H  F  +VI  I  ENP L T+E  + + 
Sbjct: 113 SGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTH 172

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFP 321
                A  LE  ++ E + +G  G++      Y+++ AN+    +G+  L+  +++N   
Sbjct: 173 EAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMT 231

Query: 322 WMSEVID--LKKEKNFFETRVTEYQQ 345
           W+    D   + + +FFE R + Y++
Sbjct: 232 WIKAYADNFTETKTDFFEMRNSSYKK 257


>gi|228861159|ref|YP_002854182.1| ribonucleotide reductase B subunit [Enterobacteria phage RB51]
 gi|227438833|gb|ACP31145.1| ribonucleotide reductase B subunit [Enterobacteria phage RB51]
          Length = 392

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 134/364 (36%), Gaps = 45/364 (12%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    +      +  W P EV +  
Sbjct: 1   MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +       AD 
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMKRAESIGRYYDDVIEKTRYWQNAKADI 174

Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
           E+ ++                                    E + FY  FA   +  +  
Sbjct: 175 EYQKEINADEDDIKDAIEHEMYWKRELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234

Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
             M G A+  ++I RDE LHL     +I Q+++           KE +Q++  +  E   
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAKECEQEAVDIFMEVNR 294

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVI 327
            E  +A      G   GLN  S   ++ ++   R  Q GL  P+     ++P+PW+ E +
Sbjct: 295 QEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYL 354

Query: 328 DLKK 331
           +   
Sbjct: 355 NSDN 358


>gi|152991848|ref|YP_001357569.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp.
           NBC37-1]
 gi|151423709|dbj|BAF71212.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp.
           NBC37-1]
          Length = 337

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 146/348 (41%), Gaps = 24/348 (6%)

Query: 6   GLSPIQAGEKRVNVDDKRMLNARSDVNQ-LLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
            +      +    + D+++              KY W    Y     N W P+EV    +
Sbjct: 2   DVKHYYNPQGE-EILDEKIYGGSPTGFVDFNRSKYRWDSNIYDLMNANTWFPSEVNTSTE 60

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
              ++    LTD+E+ + K      + ++S      +    R  +N   +  +  Q  +E
Sbjct: 61  KKNFE---ALTDNEQSIYKMTFAQLSFNDS-AQEEYLSDFRRLANNRLVKSVISLQIMQE 116

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
             HS ++  ++ + G  E E+FN+Y+   ++  K            +  F         +
Sbjct: 117 VNHSKSYAVLLDACGNSE-EVFNLYKYDAALNKK--------NLQVAEQFAKYIDGGSAD 167

Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE-SLHLNFGIDVIN 243
            +    +  V  EG++F  GF+ I  LG  +K+ G  +  ++I RDE + HL    ++  
Sbjct: 168 KMLLSAMASVNLEGIYFLLGFSYIYLLG--DKVPGARDMIKFIARDELNTHLPLFANIFK 225

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANR 302
            I+ EN           +  M+ +A  +E+ Y H  + +   +G+     EQ +   AN 
Sbjct: 226 TIQKEN--NIATSTIDAAYKMIQDAVKIELEYGHYLLDQFPIMGVTHELMEQTVYNYAND 283

Query: 303 RCHQIGLEPLFKYTENPF--PWMSEVIDLKK-EKNFFETRVTEYQQGA 347
           R  +IGL+P+F  +   +    +++ +++ + + NFFE+ V+ Y + +
Sbjct: 284 RLKKIGLDPIFDESATTYLQKLVTKHLEMNEVKSNFFESNVSNYAKSS 331


>gi|32709431|gb|AAP86734.1| NrdB [Enterobacteria phage T2H]
          Length = 392

 Score =  126 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 134/364 (36%), Gaps = 45/364 (12%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    +      +  W P EV +  
Sbjct: 1   MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +       AD 
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMKRAESIGRYYDDVIEKTRYWQNAKADI 174

Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
           E+ ++                                    E + FY  FA   +  +  
Sbjct: 175 EYKKEINADEDDIKDAIEHEMYWKRELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234

Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
             M G A+  ++I RDE LHL     +I Q+++           KE +Q++  +  E   
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAKECEQEAVDIFMEVNR 294

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVI 327
            E  +A      G   GLN  S   ++ ++   R  Q GL  P+     ++P+PW+ E +
Sbjct: 295 QEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYL 354

Query: 328 DLKK 331
           +   
Sbjct: 355 NSDN 358


>gi|259046997|ref|ZP_05737398.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Granulicatella adiacens ATCC 49175]
 gi|259036316|gb|EEW37571.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Granulicatella adiacens ATCC 49175]
          Length = 346

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 124/346 (35%), Gaps = 38/346 (10%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEK-----------YLSACNNHWMPTEVPMQDDLAL 67
           +  KR  N     N   P++Y  A +            +       W+ T +P+ +DL  
Sbjct: 11  MSTKRYFNEILSQNSTQPVEYYKAIDWNQVEDMIDKLTWEKLTEQFWLDTRIPVSNDLDD 70

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           W++   L+  E+ ++ +  G     ++L +      +  ++             F E+VH
Sbjct: 71  WRT---LSPAEKDVVGKVFGGLTLLDTLQSEEGASLMKDYVRTQHEEAVWNNIQFMESVH 127

Query: 128 SHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
           + ++  I ++L       ++F        +  KA    +  Q+                 
Sbjct: 128 AKSYSTIFSTLHTKAEIEDIFEWTNNNEYLQFKAKKINEIYQSKD--------------- 172

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
              + V   + E   FY+GF   L     NK+  +AE  + I+RDES+H  +      Q 
Sbjct: 173 ALKMKVASTMLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYTGYKFQQG 232

Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
             E      +E +     +  E    E+ Y      +  VG      + ++++ AN+   
Sbjct: 233 YNELSEQEQEEMKMWVYNLCLELYQNEVKYTQSIYDQ--VGWT-EKVKVFIRYNANKALQ 289

Query: 306 QIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
            +G +PLF       +P   M+ +       +FF      Y  G+ 
Sbjct: 290 NLGFDPLFPDTAEDVDPIV-MNGISTGTSNHDFFSQVGNGYLLGSV 334


>gi|306834752|ref|ZP_07467817.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           accolens ATCC 49726]
 gi|304569364|gb|EFM44864.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           accolens ATCC 49726]
          Length = 337

 Score =  126 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 119/333 (35%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D   W   + +   ER +  R     
Sbjct: 28  NWNRIWDDKDLEVWN---RLTSNFWLPEKVPLSNDRNDW---SRMDPAERDLTIRVFTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    ++  +              AF +AVH+ ++  I ++L   E   + + 
Sbjct: 82  TLLDTVQATVGEISQIQDARTEHEEAVYTNIAFMQAVHARSYSSIFSTLASTEEIEKSYA 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  +A   + +                         V   +   +  Y GF  
Sbjct: 142 WAVDNPVLQQRATSVMVHYYGDD---------------PLKRKVASTLLSSLLLYAGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L      K+   A+  + I+RD+++H  +      +          +E ++ +  ++ +
Sbjct: 187 PLHFSVHGKLTNTADMIRLILRDKAVHGYYSGYKFQRGLDHATEDRREEMREFTFDLVRK 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE+ Y+ E       GL       ++++ AN+    +G   LF Y E   NP    +
Sbjct: 247 LYDLEMRYSGELYEPY--GL-MDDVATFVRYNANKALMNLGYPNLFPYEECQVNPKILAA 303

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK-----WD 352
                 +  +FF    + Y  G  ++     WD
Sbjct: 304 LTPGSDENHDFFSGSGSSYIIGKAVETSDADWD 336


>gi|190896480|gb|ACE96753.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 213

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 105/237 (44%), Gaps = 27/237 (11%)

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  W+    LT DE+  I   L FFA+S+ +V  NI     + +   E R +   Q   
Sbjct: 1   DLGHWE---NLTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS  +  ++ +   D  E   LF+    VP +  KA WAL++              D
Sbjct: 58  ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWI-------------D 104

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             + F + L   +   EG++F   F  I  L +   M G+    + I RDE LH +F   
Sbjct: 105 GGESFAERLIA-FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
           + + ++ +         +++ + ++ EA  +E  +  +++P   VG+N     QY++
Sbjct: 164 LYSLLRKKLG-------EERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213


>gi|190896442|gb|ACE96734.1| ribonucleotide reductase beta subunit [Populus tremula]
 gi|190896490|gb|ACE96758.1| ribonucleotide reductase beta subunit [Populus tremula]
          Length = 213

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 27/237 (11%)

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  W+    LT DE+  I   L FF +S+ +V  NI     + +   E R +   Q   
Sbjct: 1   DLGHWE---NLTPDEKHFISHVLAFFVASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57

Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
           E +HS  +  ++ +   D  E   LF+    VP +  KA WAL++              D
Sbjct: 58  ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWI-------------D 104

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
             + F + L   +   EG++F   F  I  L +   M G+    + I RDE LH +F   
Sbjct: 105 GGESFAERLIA-FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
           + + ++ +         +++ + ++ EA  +E  +  +++P   VG+N     QY++
Sbjct: 164 LYSLLRKKLS-------EERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213


>gi|260889741|ref|ZP_05901004.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
           hofstadii F0254]
 gi|260860347|gb|EEX74847.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
           hofstadii F0254]
          Length = 335

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 126/306 (41%), Gaps = 19/306 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE     D+  W S   L    +L     LG     ++L ++  +  I
Sbjct: 23  FWEQNLKQFWIDTEYIPSKDIDSWNS---LEPAMKLAYLHVLGGLTLLDTLQSHTGMPKI 79

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+ + + R  L      E +H+ ++  I T++       E F   +E P +  KAN  
Sbjct: 80  IDHIESLQNRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFRWVQENPHLQYKANKI 139

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y Q +++P       +A +  +       V  E   FY+GF   L L    +MV   +
Sbjct: 140 DAYYQKMNNP-------EASKREIAMALAASVYLETYLFYSGFFLPLWLAGQGEMVASCD 192

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+ DES+H  F   +  ++          + + + + ++++    E  Y  E    
Sbjct: 193 IIKKIIADESIHGVFVGLLFQELYNSFSEEEKADMRAELKKLMYDLYENETRYTDEIY-- 250

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETRV 340
           G +GL     ++Y+++ AN+    +G E  F+    NP   +   ++++  + +FF  + 
Sbjct: 251 GDLGLT-GDVKEYIRYNANKALMNLGFEEEFEVKNVNPI--VLNGLNVETTQHDFFSKKS 307

Query: 341 TEYQQG 346
           T Y++ 
Sbjct: 308 TNYEKA 313


>gi|298253146|ref|ZP_06976938.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1]
 gi|297532541|gb|EFH71427.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1]
          Length = 331

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 111/331 (33%), Gaps = 35/331 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N ++  K    W        N W+P +VP+ +D+  W+S   LTD ER    R     
Sbjct: 22  NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 75

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++  A    L    H      +      AF +++H+ ++  I ++L   E   E + 
Sbjct: 76  TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSEEIDEAYR 135

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +    L   ++                      +   +   +  Y GF  
Sbjct: 136 WAVGNDVLQQRVTTVLCEYESED---------------PLKRKIAATMLSSLLLYAGFYL 180

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L      KM+  A+  + I+RD+++H  +      +          K  ++ +  +L  
Sbjct: 181 PLYFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDT 240

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
              LE+ Y+ +         +        ++ AN+    +G    +   E     +S  I
Sbjct: 241 LYDLEVEYSGQIYEGFDFHDDVFDFV---RYNANKALMNLGYPAKYSEEE---THVSPEI 294

Query: 328 ------DLKKEKNFFETRVTEYQQGAELKWD 352
                    +  +FF    + Y  G  ++ D
Sbjct: 295 LAALSPAADENHDFFSGSGSSYIMGKSVETD 325


>gi|24379140|ref|NP_721095.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           mutans UA159]
 gi|290580850|ref|YP_003485242.1| putative ribonucleotide reductase small subunit [Streptococcus
           mutans NN2025]
 gi|24377045|gb|AAN58401.1|AE014910_5 putative ribonucleotide reductase, small subunit [Streptococcus
           mutans UA159]
 gi|254997749|dbj|BAH88350.1| putative ribonucleotide reductase small subunit [Streptococcus
           mutans NN2025]
          Length = 319

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 117/327 (35%), Gaps = 30/327 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+  E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAAEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE-- 144
           G     +++ + + V AI   +  P     L    F E+VH+ ++  I ++L        
Sbjct: 60  GGLTLLDTMQSQSGVEAIRGDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEG 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA    +  +  ++                         E   FY+G
Sbjct: 120 IFEWTNNNEYLQKKAKIINEIYENGNALQKKV---------------ASTFLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E       EF+     +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQSEFRDWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 225 LYQLYENEELYTQTLY--DPVGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE 348
            M+ +       +FF      Y  G+ 
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSV 307


>gi|241888586|ref|ZP_04775893.1| ribonucleoside-diphosphate reductase, beta subunit [Gemella
           haemolysans ATCC 10379]
 gi|241864609|gb|EER68984.1| ribonucleoside-diphosphate reductase, beta subunit [Gemella
           haemolysans ATCC 10379]
          Length = 322

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 112/308 (36%), Gaps = 13/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE  +  D+  W     L D ER   K+ L      ++   +  +  +
Sbjct: 16  YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKEREAYKKVLAGLTGLDTQQGDKGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H  +   +         E +H+ ++  I TSL   +   + +   VPS      +  +
Sbjct: 74  SLHTEDMRKQAVYSFMGMMEQIHAKSYSTIFTSLIPSQETDYLLDEWVPSNPE-LQYKAK 132

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
             +      F       D    +   V  V  E   FY+GF   L L    K+    E  
Sbjct: 133 LIEDYYMKLFKPEVPTYDLYMAR---VASVFLESYIFYSGFFYPLYLAGQGKVTTSGEVI 189

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DE++H +F      ++         +  +++   +L +    E+ Y  +   +  
Sbjct: 190 RKILLDETIHGSFTGFDAQEVFKTLTAEEQERAEKEMYKLLLDLYENELVYTKDIYSE-- 247

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
           +GL     + Y+++ ANR    +G    F+  E NP   +   ++   +  +FF  +   
Sbjct: 248 IGL-YEEVKDYVEYNANRALANLGYPGYFEDKEINPI--IENAMNTNTKNHDFFSVKGDG 304

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 305 YVVSMNVE 312


>gi|332523715|ref|ZP_08399967.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314979|gb|EGJ27964.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 319

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 123/333 (36%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+D E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ +   V AI   +  P     L    F E+VH+ ++  I ++L   +   +
Sbjct: 60  GGLTLLDTMQSETGVEAIRADIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIED 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA          ++                         E   FY+G
Sbjct: 120 IFEWTNNNEFLQKKAKIINDIYANGNALQKKV---------------ASTYLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E      + F++    +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQESFREWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E +Y      +  VG        ++++ AN+    +G +PLF       NP  
Sbjct: 225 LYQLYENEESYTKTLYDQ--VGWTDEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            M+ +       +FF      Y  G+   ++ D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMQDD 313


>gi|257125877|ref|YP_003163991.1| ribonucleoside-diphosphate reductase [Leptotrichia buccalis
           C-1013-b]
 gi|257049816|gb|ACV39000.1| Ribonucleoside-diphosphate reductase [Leptotrichia buccalis
           C-1013-b]
          Length = 335

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 126/306 (41%), Gaps = 19/306 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE     D+  W S   L    +L     LG     ++L ++  +  I
Sbjct: 22  FWEQNLKQFWIDTEYIPSKDIDSWNS---LEPAMKLAYLHVLGGLTLLDTLQSHTGMPKI 78

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+ + + R  L      E +H+ ++  I T++       E F   +E P +  KAN  
Sbjct: 79  IDHIESLQNRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFRWVQENPHLQYKANKI 138

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y Q +++P       +A +  +       V  E   FY+GF   L L    +MV   +
Sbjct: 139 DTYYQKMNNP-------EASKRDIAMALAASVYLETYLFYSGFFLPLWLAGQGEMVASCD 191

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+ DES+H  F   +  ++          + + + + ++++    E  Y  E    
Sbjct: 192 IIKKIIADESIHGVFVGLLFQELYNSFSEEEKADMRAELKKLMYDLYENETRYTDEIY-- 249

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETRV 340
           G +GL     ++Y+++ AN+    +G E  F+    NP   +   ++++  + +FF  + 
Sbjct: 250 GDLGLTGN-VKEYIRYNANKALMNLGFEEEFEVKNVNPI--VLNGLNVETTQHDFFSKKS 306

Query: 341 TEYQQG 346
           T Y++ 
Sbjct: 307 TNYEKA 312


>gi|73663294|ref|YP_302075.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72495809|dbj|BAE19130.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 322

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 120/308 (38%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   LTD E+   K+ L      ++  A++ +  I
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LTDPEKEAFKKALAGLTGLDTHQADDGMPLI 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H ++   +      A  E +H+ ++ +I T+L       + + + V            
Sbjct: 73  MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDKWVIEEPH----LKY 128

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            +  + +       K+A         V  V  E   FY+GF   L L    KM    E  
Sbjct: 129 KSDKIINNYHKLWGKEASIYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E       +  Q+   +L +    E+AY H       
Sbjct: 189 RKILLDESIHGVFTGMDAQSLRNELSESEKLQADQEMYKLLDDLYKNEVAYTHSLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
           +GL A     Y+++  N+    +G +P F+  E NP   +   +D   +  +FF  +   
Sbjct: 247 IGL-AEDVLNYVRYNGNKALSNLGFDPYFEEREFNPI--IENALDTTTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YTLALNVE 311


>gi|219681363|ref|YP_002456127.1| putative ribonucleoside diphosphate reductase beta chain [Erwinia
           phage phiEa21-4]
 gi|327198492|ref|YP_004327080.1| ribonucleoside diphosphate reductase beta chain [Erwinia phage
           phiEa104]
 gi|199580630|gb|ACH89017.1| putative ribonucleoside diphosphate reductase beta chain [Erwinia
           phage phiEa21-4]
 gi|311875188|emb|CBX44448.1| ribonucleoside diphosphate reductase beta chain [Erwinia phage
           phiEa104]
          Length = 365

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 129/324 (39%), Gaps = 13/324 (4%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           Y   ++ Y       W   EV +++    +++       E  +   NL +   ++S V+ 
Sbjct: 36  YPELFDLYKQQKAQDWSEDEVNLENSRIDFQTAAK---SEIEVCIENLLWQWEADSRVSR 92

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
           NI+  +   +SN E    + +Q   E +H+ T+  I+     D  E+     +  ++  +
Sbjct: 93  NIITLLAPFISNNEFAAMVTKQTEIENLHALTYSEIVRQCISDPTEMIKRVMDNQAVLDR 152

Query: 159 ANWALQYTQTLS--SPSFTTGTKDADQEFLQDLFVFYVVF---EGMWFYTGFAQILSLGR 213
           ++        L         G +  D+   Q L  F V     EG+ F   FA   +L +
Sbjct: 153 SSTIDDVMAELEILGAKKRLGYELDDEHIRQTLIKFMVSILALEGLEFIASFACTFALAQ 212

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW-TKEFQQKSRTMLHEATLLE 272
               +G+A+  Q IM DE LH       ++ +  +       +  +   + +L E    E
Sbjct: 213 RGLFMGVAQLVQKIMLDEILHSKMDFAALDILLKDPVWFQSYQNCKGDVQRILDEVMENE 272

Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDL 329
             +A     +G   VGLN    ++++ + A      + L+  +    +NP P+M + +++
Sbjct: 273 SNWADYIFSEGRSVVGLNPTLLKEWVYYSAKPLYDFLNLDYNYPVVVKNPLPYMDKWMNI 332

Query: 330 KKEKN-FFETRVTEYQQGAELKWD 352
             ++N   E   ++Y     +  D
Sbjct: 333 DSQQNANQEQDNSQYLLNTMVNDD 356


>gi|146318863|ref|YP_001198575.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis 05ZYH33]
 gi|146321071|ref|YP_001200782.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis 98HAH33]
 gi|223932819|ref|ZP_03624816.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591]
 gi|253751944|ref|YP_003025085.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis
           SC84]
 gi|253753767|ref|YP_003026908.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis
           P1/7]
 gi|253755355|ref|YP_003028495.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis
           BM407]
 gi|330833008|ref|YP_004401833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis ST3]
 gi|145689669|gb|ABP90175.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 05ZYH33]
 gi|145691877|gb|ABP92382.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 98HAH33]
 gi|223898528|gb|EEF64892.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591]
 gi|251816233|emb|CAZ51860.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus suis SC84]
 gi|251817819|emb|CAZ55572.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus suis BM407]
 gi|251820013|emb|CAR46187.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus suis P1/7]
 gi|292558520|gb|ADE31521.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
           suis GZ1]
 gi|319758306|gb|ADV70248.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis JS14]
 gi|329307231|gb|AEB81647.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis ST3]
          Length = 319

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/303 (19%), Positives = 109/303 (35%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    LT +E+ ++ +  G     ++L +   V A+ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KLTAEEKDLVGKVFGGLTLLDTLQSETGVQALR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       ++F        +  KA    
Sbjct: 79  NDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTLNTKSEIEDIFEWTNSNEYLQRKAKIIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  +T +                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYETGTPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E       + +     +L++    E  Y        
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELSEEEQDKLRDWMYDLLYQLYENEEGYTRSLY--D 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG        ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 242 AVGWT-EEVLTFLRYNANKALMNLGQDPLFPDSADDVNPII-MNGISTGTSNHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|289551411|ref|YP_003472315.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180942|gb|ADC88187.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Staphylococcus lugdunensis HKU09-01]
          Length = 322

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 120/308 (38%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   LTDDER   KR L      ++  A++ +  I
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LTDDERNTFKRALAGLTGLDTHQADDGMPLI 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H ++   +      A  E +H+ ++ +I T+L       + +   V         A +
Sbjct: 73  MLHTTDLRKKAVYAFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKADK 132

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
             +           K+A         V  V  E   FY+GF   L L    KM    E  
Sbjct: 133 IIENY----HKLWGKEASIYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      ++  ++   +L +    E++Y H       
Sbjct: 189 RKILLDESIHGVFTGIDAQSLRNELSENEKQQADKEMYVLLEDLYSNEVSYTHMLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
           +GL       Y+++  N+    +G +P F+  + NP   +   +D   +  +FF  +   
Sbjct: 247 IGLT-EDVLNYVKYNGNKALSNLGFDPYFEEKDFNPI--IENALDTTTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YTLALNVE 311


>gi|116326446|ref|YP_803166.1| ribonucleotide reductase B subunit [Enterobacteria phage RB32]
 gi|32709425|gb|AAP86731.1| NrdB [Enterobacteria phage RB32]
 gi|115344039|gb|ABI95048.1| ribonucleotide reductase B subunit [Enterobacteria phage RB32]
          Length = 392

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 131/364 (35%), Gaps = 45/364 (12%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    E    + +  W P EV +  
Sbjct: 1   MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHRVFEELTEKSLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +          
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLVKTREWENAKEFV 174

Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
           E  ++                                    E + FY  FA   +  +  
Sbjct: 175 ELAKESPDADFRLNRAIKQEAEAKCALMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234

Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
             M G A+  ++I RDE LHL     +I Q++            +E +Q++  +  E   
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVKIAQECEQEAVDIFMEVNR 294

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVI 327
            E  +A      G   GLN  S   ++ ++   R  Q GL  P+     ++P+PW+ E +
Sbjct: 295 QEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYL 354

Query: 328 DLKK 331
           +   
Sbjct: 355 NSDN 358


>gi|313890786|ref|ZP_07824411.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120887|gb|EFR44001.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 319

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 122/333 (36%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+D E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ +   V AI   +  P     L    F E+VH+ ++  I ++L   +   +
Sbjct: 60  GGLTLLDTMQSETGVEAIRADIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIED 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA           +                         E   FY+G
Sbjct: 120 IFEWTNNNEFLQKKAKIINDIYANGDALQKKV---------------ASTYLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E      + F++    +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELNEEEQESFREWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFP 321
           L++    E  Y      +  VG        ++++ AN+    +G +PLF  T    NP  
Sbjct: 225 LYQLYENEENYTKTLYDQ--VGWTDEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            M+ +       +FF      Y  G+   ++ D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMQDD 313


>gi|28377561|ref|NP_784453.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum WCFS1]
 gi|254555734|ref|YP_003062151.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum JDM1]
 gi|300769755|ref|ZP_07079637.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179714|ref|YP_003923842.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|28270393|emb|CAD63296.1| ribonucleoside-diphosphate reductase, beta chain [Lactobacillus
           plantarum WCFS1]
 gi|254044661|gb|ACT61454.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum JDM1]
 gi|300492663|gb|EFK27849.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045205|gb|ADN97748.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 336

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 114/303 (37%), Gaps = 25/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +D+A W+    L DD R ++    G     ++L + + + A+ 
Sbjct: 34  WEKLTEQFWLDTRIPVSNDMADWRE---LDDDHRWVVGHVFGGLTLLDTLQSQDGLQALR 90

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           R++        L    F E+VH+ ++  I  +L   +   E+F+       + AKA W  
Sbjct: 91  RNVLTSHETAVLNNIQFMESVHAKSYSTIFETLNTPDEINEIFDWSDSEEFLQAKAQWIY 150

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +    +                     V  V  E   FY+GF   L     N++  +AE 
Sbjct: 151 KLYDNIDEDPLKQK-------------VANVFLETFLFYSGFYTPLYYLGHNQLPNVAEI 197

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          +       EF+      L++    E  Y H    + 
Sbjct: 198 IKLILRDESVHGTYIGYKFQLGFKDRSEKQQAEFKDWMFDFLYKLYENEENYIHLVYDQ- 256

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            +G +      + ++ AN+    +G + LF       NP   M+ +       +FF    
Sbjct: 257 -IGWS-DEVLTFSRYNANKALMNLGQDALFPDTAEDVNPVV-MNGISTGTSNHDFFSQVG 313

Query: 341 TEY 343
             Y
Sbjct: 314 NGY 316


>gi|331701739|ref|YP_004398698.1| ribonucleoside-diphosphate reductase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129082|gb|AEB73635.1| Ribonucleoside-diphosphate reductase [Lactobacillus buchneri NRRL
           B-30929]
          Length = 318

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 111/303 (36%), Gaps = 26/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL+ W++   L  D + ++    G     ++L +   + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLSDWRT---LDQDHQWVVGHVFGGLTLLDTLQSQEGMASLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
           + +        L    F E+VH+ ++  I ++L   +   E+F+       +  KA    
Sbjct: 79  KDVQTQHETAVLNNIQFMESVHAKSYSSIFSTLNTPDQIDEIFDWSDSEEFLQNKALKIR 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                   P                  V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 DIYANEPDPLKKK--------------VASVFLETFLFYSGFYTPLWYLGHNKIPNVAEI 184

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          + P    ++ +      L++    E  Y H    + 
Sbjct: 185 IKLILRDESVHGTYIGYKFQIGYNQLPKEKQEDMKNWIYDFLYKLYGNEEKYTHILYDQ- 243

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
             G        ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 244 -TGWT-EDVLTFIRYNANKALMNLGQDPLFPDTAEDVNPVV-MNGISTSTANHDFFSQVG 300

Query: 341 TEY 343
             Y
Sbjct: 301 NGY 303


>gi|317495971|ref|ZP_07954333.1| ribonucleotide reductase [Gemella moribillum M424]
 gi|316913875|gb|EFV35359.1| ribonucleotide reductase [Gemella moribillum M424]
          Length = 322

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 113/308 (36%), Gaps = 13/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE  +  D+  W     L D ER   K+ L      ++   +  +  +
Sbjct: 16  YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKERDAYKKVLAGLTGLDTQQGDKGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H  +   +         E +H+ ++  I TSL   +   + +   VP+       A  
Sbjct: 74  SLHTEDMRKQAVYSFMGMMEQMHAKSYSTIFTSLIPSKETDYLLDEWVPNNEELQYKA-- 131

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
             Q + S        +     L    V  V  E   FY+GF   L L    K+    E  
Sbjct: 132 --QLIESYYLKLFKPEVPTYDLYMARVASVFLESYIFYSGFFYPLYLAGQGKLTTSGEII 189

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DE++H +F      +I         ++  ++  T+L +    E+ Y  +    G 
Sbjct: 190 RKILLDETIHGSFTGFDAQEIFKTLTPEEQEKANKEMYTLLLDLYENELKYTKDIY--GE 247

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
           +GL     + Y+++ ANR    +G    F+  E NP   +   ++   K  +FF  +   
Sbjct: 248 IGL-FEEVKDYVEYNANRALANLGYPGYFEDKEINPI--IENAMNTSTKNHDFFSVKGDG 304

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 305 YVVSMNVE 312


>gi|328958552|ref|YP_004375938.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
 gi|328674876|gb|AEB30922.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
          Length = 318

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 121/307 (39%), Gaps = 28/307 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A +  W+ T VP+ +DLA W+    L+  E+ +IK+ +G  A  ++L +   V A+ 
Sbjct: 22  WDKATSQFWLDTRVPISNDLADWRE---LSSVEQEVIKKVVGGLALLDTLQSEKGVNAMR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIIT--SLGLDEGELFNMYREVPSITAKANWAL 163
             +   +    L    F E++H+ ++  I+T  +      E+++          +  +  
Sbjct: 79  EDVRTHKEAAILNNFLFMESIHAKSYGTILTSLNSIKSINEIYDWMNND----ERMQYKA 134

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +    +         K           +  +  EG+ +Y+ F   L    +NK+  +AE 
Sbjct: 135 KRINDIYKTGNALQKK-----------IASIFLEGILYYSNFFAPLWYRGSNKLANLAEL 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P     +       +L +    E+AY  E     
Sbjct: 184 IKLIIRDESVHGTYLGYKFQLTYNELPEEEQNKLLDWMYPLLEDLMENELAYTEEIYSH- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFETR 339
            +G+ A   + ++++ AN+    +G    +   +    NP   M+ +       +FF   
Sbjct: 243 -IGI-AEDVKTFVRYNANKSLQNMGFPAYYDNADLADVNPIV-MNGISIETSNHDFFSQV 299

Query: 340 VTEYQQG 346
              Y  G
Sbjct: 300 GAGYLMG 306


>gi|163791218|ref|ZP_02185634.1| ribonucleotide-diphosphate [Carnobacterium sp. AT7]
 gi|159873488|gb|EDP67576.1| ribonucleotide-diphosphate [Carnobacterium sp. AT7]
          Length = 320

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 116/318 (36%), Gaps = 28/318 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +  +     WE         W  T +P+ +DL  W     L   E+ M+ +  G  
Sbjct: 9   NWNNIEDMIDKLTWE---KLVEQFWTDTRIPVSNDLDDW---ARLPKAEKDMVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
              ++L + + V A+   +             F E++H+ ++  I ++L    +  E+F 
Sbjct: 63  TLLDTLQSQDGVQALKPFIRTQHEEAVYNNIQFMESMHAKSYSAIFSTLNSKVEIDEIFQ 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA+      Q  +                       V+ E   FY+GF  
Sbjct: 123 WTNTNDLLQIKASTINDIYQNGTELQRKV---------------ASVMLESFLFYSGFFA 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          + P    +E +  +  +L +
Sbjct: 168 PLHYLGNNKLPNVAEIIKLILRDESVHGTYIGYKFQIAYNQLPDNEKEEMKNWTYELLFK 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325
               E+ YA        +G      + ++++ AN+    +G +PLF  T N      M+ 
Sbjct: 228 LYQNEVKYAEYLY--DEIGWT-ERVKVFLRYNANKALQNLGFDPLFPDTANDVDPVIMNG 284

Query: 326 VIDLKKEKNFFETRVTEY 343
           +       +FF      Y
Sbjct: 285 ISTGTSNHDFFSQVGNGY 302


>gi|315658919|ref|ZP_07911786.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           lugdunensis M23590]
 gi|315496043|gb|EFU84371.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           lugdunensis M23590]
          Length = 322

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 120/308 (38%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   LTDDER   KR L      ++  A++ +  I
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LTDDERNTFKRALAGLTGLDTHQADDGMPLI 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H ++   +      A  E +H+ ++ +I T+L       + +   V         A +
Sbjct: 73  MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKADK 132

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
             +           K+A         V  V  E   FY+GF   L L    KM    E  
Sbjct: 133 IIENY----HKLWGKEASIYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      ++  ++   +L +    E++Y H       
Sbjct: 189 RKILLDESIHGVFTGIDAQSLRNELSENEKQQADKEMYVLLEDLYSNEVSYTHMLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
           +GL       Y+++  N+    +G +P F+  + NP   +   +D   +  +FF  +   
Sbjct: 247 IGLT-EDVLNYVKYNGNKALSNLGFDPYFEEKDFNPI--IENALDTTTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YTLALNVE 311


>gi|295397900|ref|ZP_06807962.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
 gi|294973880|gb|EFG49645.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
          Length = 323

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/328 (19%), Positives = 121/328 (36%), Gaps = 34/328 (10%)

Query: 25  LNARS----DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
            N       + N +  +     WE         W+ T +P+ +DL  W++   L+  E+ 
Sbjct: 4   FNENPYIAINWNDIEDMIDKLTWE---KLTEQFWLDTRIPLSNDLDTWRT---LSAREQD 57

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
           MI +  G     ++L + + + ++   +             F E+VH+ ++  I ++L  
Sbjct: 58  MIGKVFGGLTLLDTLQSEDGMESLKASIRTQHEEAVYNNIQFMESVHAKSYSSIFSTLNT 117

Query: 141 DE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
            +   ++F   RE   I  KAN      Q  +                       V  E 
Sbjct: 118 PKEIDKIFAWTRENEFIQYKANRINGIYQNGTDLQRKV---------------ASVFLES 162

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
             FY+GF   L      K+  +AE  + I+RDES+H  +          +      ++ Q
Sbjct: 163 FLFYSGFYAPLWYLGNGKLPNVAEIIKLILRDESVHGTYIGYKFQIAFNQLSKEEQEDMQ 222

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE- 317
             + ++L E    E  Y+        +G      + ++++ AN+    +G +PLF  T  
Sbjct: 223 NWAFSLLFELYENEAKYSEYIYDD--LGWT-EDVKIFLRYNANKALQNLGFDPLFPDTAD 279

Query: 318 --NPFPWMSEVIDLKKEKNFFETRVTEY 343
             +P   M+ +       +FF      Y
Sbjct: 280 DVDPIV-MNGISTGTSNHDFFSQVGNGY 306


>gi|302023955|ref|ZP_07249166.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           suis 05HAS68]
          Length = 320

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/303 (19%), Positives = 109/303 (35%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    LT +E+ ++ +  G     ++L +   V A+ 
Sbjct: 23  WEKLTEQFWLDTRIPLSNDLDDWR---KLTAEEKDLVGKVFGGLTLLDTLQSETGVQALR 79

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +  P          F E+VH+ ++  I ++L       ++F        +  KA    
Sbjct: 80  NDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTLNTKSEIEDIFEWTNSNEYLQRKAKIIN 139

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  +T +                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 140 EIYETGTPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 184

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E       + +     +L++    E  Y        
Sbjct: 185 IKLIIRDESVHGTYIGYKFQLGFNELSEEEQDKLRDWMYDLLYQLYENEEGYTRSLY--D 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG        ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 243 AVGWT-EEVLTFLRYNANKALMNLGQDPLFPDSADDVNPII-MNGISTGTSNHDFFSQVG 300

Query: 341 TEY 343
             Y
Sbjct: 301 NGY 303


>gi|241895721|ref|ZP_04783017.1| ribonucleotide-diphosphate reductase subunit beta [Weissella
           paramesenteroides ATCC 33313]
 gi|241871088|gb|EER74839.1| ribonucleotide-diphosphate reductase subunit beta [Weissella
           paramesenteroides ATCC 33313]
          Length = 318

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 113/314 (35%), Gaps = 29/314 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    +T+ E  ++    G     ++L + + + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWR---KMTEQEHYLVGHVFGGLTLLDTLQSQDGMASLK 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           +          L    F E+VH+ ++  I  +L       E+F+       +  KAN   
Sbjct: 79  QATRTQHELAVLNNIEFMESVHAKSYSSIFETLHTPAEIDEIFDWTNSNEFLQYKANRIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           Q  Q  S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 QVYQNGSQLQRKV---------------ASVFLETFLFYSGFYTPLWYLGHNKLNNVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E       E +     +L +    E  Y        
Sbjct: 184 IKLILRDESVHGTYIGYKFQLGFNELSTDEQNELKTWLYDLLLDLYGNEEKYTKLLY--D 241

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            +G    S   ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 242 EIGWT-ESVLTFLRYNANKALMNLGQDPLFPDGAEDVNPIV-MNGISTTTSNHDFFSQVG 299

Query: 341 TEYQQGA--ELKWD 352
             Y+ G    ++ D
Sbjct: 300 NGYRLGQVEAMEDD 313


>gi|70727160|ref|YP_254076.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           haemolyticus JCSC1435]
 gi|68447886|dbj|BAE05470.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           haemolyticus JCSC1435]
          Length = 322

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 121/308 (39%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   LT+DE+   KR L      ++  A++ +  I
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LTEDEKNTFKRALAGLTGLDTHQADDGMPLI 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H ++   +      A  E +H+ ++ +I T+L       + +   V         + +
Sbjct: 73  MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDK 132

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
             +           K+A         V  V  E   FY+GF   L L    KM    E  
Sbjct: 133 IIENY----HKLWGKEASIYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      ++  ++   +L +    E++Y H       
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSENEKQKADKEMYKLLEDLYANEVSYTHMLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
           +GL+      Y+Q+  N+    +G EP F+  E NP   +   +D   +  +FF  +   
Sbjct: 247 IGLS-EDVLNYVQYNGNKALSNLGFEPYFEEKEFNPI--IENALDTTTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YTLALNVE 311


>gi|223043034|ref|ZP_03613082.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           capitis SK14]
 gi|314933044|ref|ZP_07840410.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           caprae C87]
 gi|222443888|gb|EEE49985.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           capitis SK14]
 gi|313654363|gb|EFS18119.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           caprae C87]
          Length = 322

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 119/308 (38%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   LTD E+   K+ L      ++  A++ +  I
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LTDSEKETFKKALAGLTGLDTHQADDGMPLI 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H ++   +      A  E +H+ ++ +I T+L       + +   V            
Sbjct: 73  MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPH----LKY 128

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            +  +         K+A         V  V  E   FY+GF   L L    KM    E  
Sbjct: 129 KSDKIIDNYHKLWGKEASIFDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      ++  Q+   +L+E    E++Y H       
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEMYKLLNELYDNEVSYTHLLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
           +GL       Y+++  N+    +G EP F+  E NP   +   +D   K  +FF  +   
Sbjct: 247 IGLT-EDVLNYVRYNGNKALSNLGFEPYFEEREFNPI--IENALDTSTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YTLALNVE 311


>gi|308814593|ref|YP_003934867.1| ribonucleotide reductase B subunit [Shigella phage SP18]
 gi|308206185|gb|ADO19584.1| ribonucleotide reductase B subunit [Shigella phage SP18]
          Length = 392

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 135/364 (37%), Gaps = 45/364 (12%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    E      +  W P EV +  
Sbjct: 1   MSTVFN-TTPVDVLTEPMFFGSGLGIARYDIQ--RHKVFEELTEKQLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L + ++ +   NL + +  +S+       A+   +S+P    ++    F 
Sbjct: 58  DGAQF---NKLPEHQQNIFTNNLKYQSLLDSIQGRAPAAALAALVSDPSLDTWIQTWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT------- 176
           E +HS ++ +I+ +L  D  ++F+      +I  +A     Y   + + +          
Sbjct: 115 ETIHSRSYTHIMRNLYTDPAKVFDEILLDDAIMKRAESIGHYYDDVLNKTRQWQNQIAFV 174

Query: 177 ----GTKDADQEFLQDLFVFYVVF-----------------EGMWFYTGFAQILSLGRAN 215
                T +AD+   + +    +                   E + FY  FA   +  +  
Sbjct: 175 ELAKETPEADERLERAIKQESIAKRALMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234

Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
             M G A+  ++I RDE LHL     ++ Q++             E + ++  +  E   
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYILRQLQTGVDGDEWVKIAHECEAEAAAIFMEVNR 294

Query: 271 LEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEP--LFKYTENPFPWMSEVI 327
            E  +A       G  GL+     +++ ++   R  Q GL    + + T++P PW+ E +
Sbjct: 295 QEKEWAVHLFKDGGLPGLSVEILNRFIDYLTVSRMKQCGLPCEIVLESTKHPIPWIREYL 354

Query: 328 DLKK 331
           +   
Sbjct: 355 NSDN 358


>gi|228904848|ref|ZP_04068902.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 4222]
 gi|228854862|gb|EEM99466.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis IBL 4222]
          Length = 343

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 127/311 (40%), Gaps = 18/311 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+  E+P+  D  +W   + L  D++ + K+ LG     ++      +  +
Sbjct: 29  IYNQMRQQFWLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLV 85

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+ +P+ +  +   A  E +H+ ++ +I  +L  +E    +F+   E P +  KA+  
Sbjct: 86  SLHMEDPQKKAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADII 145

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             + + L  P       D D + L    V  V  E   FY+GF   L L    ++    E
Sbjct: 146 TGHYRKLLKP-------DVDPKELYMAIVASVFLESFLFYSGFFYPLFLAGQGQLTASGE 198

Query: 223 QYQYIMRDESLHLNFGIDVINQ-IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM- 280
               I+RDE++H   G     +  + +      +E  +++  +L      E+ Y ++   
Sbjct: 199 IIALILRDEAIHGVTGGIFAQEIYENQLTEAEQQEVDKEAIQLLEMLYANELDYTNDVYA 258

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETR 339
           P G   +      +++++ AN+    +G +  F     NP    + +    K+ +FF  +
Sbjct: 259 PLGKDMI--EEVNKFLRYNANKAMMNLGYDQYFDDEYVNPIVQ-NGLQTKTKQHDFFSVK 315

Query: 340 VTEYQQGAELK 350
              Y +   ++
Sbjct: 316 GNGYVKAINVE 326


>gi|213419183|ref|ZP_03352249.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 305

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 106/293 (36%), Gaps = 28/293 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E P +  KA   L +  +                         V  E   FY+GF   + 
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E   
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREELKLFALDLLMELYD 231

Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP 319
            EI Y        G+V       + ++ + AN+    +G E LF       NP
Sbjct: 232 NEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNP 280


>gi|239636654|ref|ZP_04677656.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           warneri L37603]
 gi|239598009|gb|EEQ80504.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           warneri L37603]
 gi|330683860|gb|EGG95634.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis VCU121]
          Length = 324

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 119/308 (38%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   L++ E+   K+ L      ++  A++ +  I
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LSEAEKNTFKKALAGLTGLDTHQADDGMPLI 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H ++   +      A  E +H+ ++ +I T+L       + +   V         + +
Sbjct: 73  MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDK 132

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
             +           K+A         V  V  E   FY+GF   L L    KM    E  
Sbjct: 133 IIENY----HKLWGKEASIFDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      +   Q+   +L E    E++Y H       
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSESEKQRADQEMYKLLKELYDNEVSYTHLLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
           +GL A     Y+++  N+    +G EP F+  E NP   +   +D   +  +FF  +   
Sbjct: 247 IGL-AEDVLNYVKYNGNKALSNLGFEPYFEEREFNPI--IENALDTTTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YTLALNVE 311


>gi|312864696|ref|ZP_07724927.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
 gi|311099823|gb|EFQ58036.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
          Length = 319

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/319 (19%), Positives = 115/319 (36%), Gaps = 30/319 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WE         W+ T +P+ +DL  W+    L++ E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSEAEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ +   V AI   +        L    F E+VH+ ++  I ++L       E+F+
Sbjct: 63  TLLDTMQSQTGVEAIRGDIRTQHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFD 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA    +      +                         E   FY+GF  
Sbjct: 123 WTNNNEYLQKKAEIINEIYLHGGALQKKV---------------ASTFLETFLFYSGFFT 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          E       EF+     +L++
Sbjct: 168 PLYYLGNNKLSNVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQSEFRDWMYDLLYQ 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y         VG        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 228 LYENEELYTKTLY--DEVGWT-EEVMTFLRYNANKALMNLGQDPLFPDTADDVNPIV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEY 343
            +       +FF      Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302


>gi|242372965|ref|ZP_04818539.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis M23864:W1]
 gi|242349291|gb|EES40892.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis M23864:W1]
          Length = 322

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 119/308 (38%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   L+D ER   K+ L      ++  A++ +  I
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LSDSERETFKKALAGLTGLDTHQADDGMPLI 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H ++   +      A  E +H+ ++ +I T+L       + +   V            
Sbjct: 73  MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPH----LKY 128

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            +  +         K+A         V  V  E   FY+GF   L L    KM    E  
Sbjct: 129 KSDKIIDNYHKLWGKEASIFDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      ++  Q+   +L+E    E++Y H       
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEMYKLLNELYDNEVSYTHLLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
           +GL       Y+++  N+    +G EP F+  E NP   +   +D   K  +FF  +   
Sbjct: 247 IGLT-EDVLNYVRYNGNKALSNLGFEPYFEEREFNPI--IENALDTSTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YTLALNVE 311


>gi|75758223|ref|ZP_00738348.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74494277|gb|EAO57368.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 342

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 127/311 (40%), Gaps = 18/311 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+  E+P+  D  +W   + L  D++ + K+ LG     ++      +  +
Sbjct: 28  IYNQMRQQFWLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLV 84

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+ +P+ +  +   A  E +H+ ++ +I  +L  +E    +F+   E P +  KA+  
Sbjct: 85  SLHMEDPQKKAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADII 144

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             + + L  P       D D + L    V  V  E   FY+GF   L L    ++    E
Sbjct: 145 TGHYRKLLKP-------DVDPKELYMAIVASVFLESFLFYSGFFYPLFLAGQGQLTASGE 197

Query: 223 QYQYIMRDESLHLNFGIDVINQ-IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM- 280
               I+RDE++H   G     +  + +      +E  +++  +L      E+ Y ++   
Sbjct: 198 IIALILRDEAIHGVTGGIFAQEIYENQLTEAEQQEVDKEAIQLLEMLYANELDYTNDVYA 257

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETR 339
           P G   +      +++++ AN+    +G +  F     NP    + +    K+ +FF  +
Sbjct: 258 PLGKDMI--EEVNKFLRYNANKAMMNLGYDQYFDDEYVNPIVQ-NGLQTKTKQHDFFSVK 314

Query: 340 VTEYQQGAELK 350
              Y +   ++
Sbjct: 315 GNGYVKAINVE 325


>gi|224475873|ref|YP_002633479.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222420480|emb|CAL27294.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 324

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 117/308 (37%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   LT +E+   K+ L      ++  A++ +  I
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LTPEEQDTFKKALAGLTGLDTHQADDGMPLI 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H  +   +      A  E +H+ ++ +I T+L       + +   V            
Sbjct: 73  MLHTKDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVLEEPH----LKF 128

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            +  +         K+A         V  V  E   FY+GF   L L    +M    E  
Sbjct: 129 KSDKIVGNYHKLWAKEASVYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGRMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      +   Q    +L E    E++Y H+      
Sbjct: 189 RKILLDESIHGVFTGLDAQHLRNELSENEKQRADQHMYKLLEELYKNEVSYTHKLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
           +GL A     Y+++  N+    +G EP F+  E NP   +   +D   K  +FF  +   
Sbjct: 247 IGL-AEDVLNYVRYNGNKALSNLGFEPYFEEREFNPI--IENALDTSTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YTLALNVE 311


>gi|109290088|ref|YP_656337.1| hypothetical protein PHG25ORF102c [Aeromonas phage 25]
 gi|104345761|gb|ABF72661.1| hypothetical protein PHG25ORF102c [Aeromonas phage 25]
          Length = 332

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 99/319 (31%), Gaps = 28/319 (8%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +KY    +      +  W   E  + +D+   ++   LT  E   I   L  F   E  V
Sbjct: 19  IKYPEFGKLADEQMHAFWPWDEPVVDNDIQDLRT--KLTPGELNGITTVLKLFTIYERKV 76

Query: 97  ANNIVLAIYRHLS-NPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
             +       H    PE  +     +  E   H+  +  +   L LD+   +  ++E   
Sbjct: 77  GEDYWSGRIAHTFGRPEINRMATLFSAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKESEE 136

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL--- 211
           ++ +  +  +                         F  +   EG   Y+ FA +      
Sbjct: 137 LSRRIQFVGKSVNDPDDA---------------KSFAAFTFIEGAVLYSSFAFLKHFQAQ 181

Query: 212 -GRANKMVGIAEQYQYIMRDESLH----LNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
               + M  I       + DE  H          +  ++K +       + +     M  
Sbjct: 182 ECGKDLMRNICRGVDLSVADEHHHSIGGAMLFQTLCREMKEKYGEDVRAKLKNDIINMAR 241

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSE 325
           +    E         +   G+ A     +++   N     +G EP+F+   NP   W   
Sbjct: 242 QVFDHESGIIDLVFAEPIDGITADELRVFVKSRINLCLENLGYEPIFEIENNPIADWFYR 301

Query: 326 VIDLKKEKNFFETRVTEYQ 344
            I+ KK  +FF    +EY 
Sbjct: 302 TINAKKFHDFFTGSGSEYN 320


>gi|314121808|ref|YP_004063927.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           vB_EcoM-VR7]
 gi|313151565|gb|ADR32621.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
           vB_EcoM-VR7]
          Length = 392

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 132/364 (36%), Gaps = 45/364 (12%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    E      +  W P EV +  
Sbjct: 1   MSTVFN-TTPVDVLAEPMFFGSGLGIARYDIQ--RHKVFEELTEKQLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L + ++ +   NL + +  +S+       A+   +S+P    ++    F 
Sbjct: 58  DGAQF---NKLPEHQQNIFTNNLKYQSLLDSIQGRAPAAALAALVSDPSLDTWIQTWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +HS ++ +I+ +L  D  ++F+      +I  +A     Y   + + +     + A  
Sbjct: 115 ETIHSRSYTHIMRNLYTDPAKVFDEILLDDAIMKRAESIGYYYDDVLNKTRQWQNQIAFV 174

Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
           E  ++                                    E + FY  FA   +  +  
Sbjct: 175 ELAKETPEVDQRLERAIKQEAIAKRALMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234

Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
             M G A+  ++I RDE LHL     ++ Q++             E + ++  +  E   
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYILRQLQTGVDGDEWVKIAHECEAEAAAIFMEVNR 294

Query: 271 LEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEP--LFKYTENPFPWMSEVI 327
            E  +A       G  GL+     +++ ++   R  Q GL    + + T++P PW+ E +
Sbjct: 295 QEKEWAVHLFKDGGLPGLSVEILNRFIDYLTVSRMKQCGLPCEIVLESTKHPIPWIREYL 354

Query: 328 DLKK 331
           +   
Sbjct: 355 NSDN 358


>gi|116493227|ref|YP_804962.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus
           pentosaceus ATCC 25745]
 gi|116103377|gb|ABJ68520.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Pediococcus pentosaceus ATCC 25745]
          Length = 317

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 113/308 (36%), Gaps = 26/308 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL+ W+    L +D + ++    G     ++L + + + A+ 
Sbjct: 21  WEKLTEQFWLDTRIPISNDLSDWRE---LDEDHKWVVGHVFGGLTLLDTLQSQDGMAALR 77

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +  P     L    F E+VH+ ++  I  +L       E+F        +  K     
Sbjct: 78  KDIRTPHETAVLNNIQFMESVHAKSYSSIFETLNTPSEIDEIFAWSDSEEFLQNKTKRIY 137

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +       P                  +  V  E   FY+GF   L     N++  +AE 
Sbjct: 138 ELYHDDEHPLKKK--------------ISSVFLETFLFYSGFFTPLYYLGHNQLNNVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E      +E +      L++    E  Y H    + 
Sbjct: 184 IKLILRDESVHGTYIGYKFQLGLKELGENEQQEIKDWMYNFLYDLYDNEEKYVHTLYDQ- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
            VG        + ++ AN+    +G +PLF  TE   NP   M+ +       +FF    
Sbjct: 243 -VGWT-DEVLTFTRYNANKALMNLGQDPLFPDTEADVNPIV-MNGISTGTSNHDFFSQVG 299

Query: 341 TEYQQGAE 348
             Y+ G  
Sbjct: 300 NGYRLGNV 307


>gi|225868773|ref|YP_002744721.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi
           subsp. zooepidemicus]
 gi|225702049|emb|CAW99658.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus equi subsp. zooepidemicus]
          Length = 319

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 116/322 (36%), Gaps = 30/322 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+  E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAVEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ + + V AI + +  P     L    F E+VH+ ++  I ++L   +   +
Sbjct: 60  GGLTLLDTMQSESGVEAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIED 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA       +  S+                         E   FY+G
Sbjct: 120 IFEWTNNNLFLQNKAKIINDIYENGSALQKKV---------------ASTYLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E      +  +     +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSESEQESLRDWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 225 LYQLYENEEQYTKTLY--DEVGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEY 343
            M+ +       +FF      Y
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGY 302


>gi|225870271|ref|YP_002746218.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi
           subsp. equi 4047]
 gi|225699675|emb|CAW93380.1| putative ribonucleoside-diphosphate reductase beta chain
           [Streptococcus equi subsp. equi 4047]
          Length = 319

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 119/333 (35%), Gaps = 32/333 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+  E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---RLSAVEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ + + V AI + +  P     L    F E+VH+ ++  I ++L   +   +
Sbjct: 60  GGLTLLDTMQSESGVEAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIED 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA       +  S+                         E   FY+G
Sbjct: 120 IFEWTNNNVFLQNKAKIINDIYENGSALQKKV---------------ASTYLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E      +  +     +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSESEQESLRDWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 225 LYQLYENEEQYTKTLY--DEVGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
            M+ +       +FF      Y  G    +  D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGTVEAMTDD 313


>gi|148700272|gb|EDL32219.1| mCG1034315 [Mus musculus]
          Length = 213

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 6/153 (3%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
           +  E  V  +++ +L   S    + P++Y   W  Y  A  + W   EV +  +L  W  
Sbjct: 64  ETEENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQARASFWTGEEVDLSKNLPHW-- 121

Query: 71  KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
            N L  DE+  I   L FFA+S+ +V  N+V    + +  PE   +   Q   E VHS  
Sbjct: 122 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPETHCFYGFQILIENVHSEM 180

Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
           +  +I +   D  +   LFN    +P +  KA+
Sbjct: 181 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKAD 213


>gi|158079504|ref|YP_001504317.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C]
 gi|157890348|dbj|BAF81476.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C]
          Length = 327

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 118/301 (39%), Gaps = 23/301 (7%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T VP+ +D+  W     L+D E+ +I +  G     +++ + + V ++ 
Sbjct: 24  WKKLTEQFWLDTRVPVGNDVNDW---AKLSDMEQDLINKVFGGLTLLDTVQSESGVHSLL 80

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
             +        L   AF EAVH+ ++  I ++      E+ N++  V +        LQY
Sbjct: 81  DDVRTQHEEAVLNNIAFMEAVHAKSYSTIFSTF-NTPTEIDNIFEWVATNKR-----LQY 134

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
              + +  +  GT    +          V+ E   FY+GF   L      KMV  AE  +
Sbjct: 135 KANIINDIYRNGTPLQKK-------SASVLLESFLFYSGFYTPLRYLGEAKMVNTAEIIK 187

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I+RDES+H  +          + P    KE +Q    +  +    E  Y  E   +  +
Sbjct: 188 LIIRDESVHGTYIGYKYQLGFNQLPETEQKEMEQWVIDLAFKLWENETQYTAELYSE--I 245

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTE 342
           G        ++++  N+    +G+ PLF  T    NP   M+ +       +FF      
Sbjct: 246 GWT-KDVNTFLEYNLNKALANLGMNPLFPTTSADVNPIV-MNGISTTTSNHDFFSQVGNG 303

Query: 343 Y 343
           Y
Sbjct: 304 Y 304


>gi|269121363|ref|YP_003309540.1| ribonucleoside-diphosphate reductase [Sebaldella termitidis ATCC
           33386]
 gi|268615241|gb|ACZ09609.1| Ribonucleoside-diphosphate reductase [Sebaldella termitidis ATCC
           33386]
          Length = 331

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 127/306 (41%), Gaps = 19/306 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE     D+  W S   L  + R   K+ LG     ++L ++  +  +
Sbjct: 20  FWEQNLKQFWIDTEYIPSKDIDSWNS---LEQEMREAYKKALGGLTLLDTLQSHTGMPKV 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             H+ + + +  L      E +H+ ++  I T++       E+FN  +E   +  KA   
Sbjct: 77  IDHIDSLQNKSVLSYMCMMETIHAKSYSTIFTTVATTPEINEIFNWVQENEYLQFKARTI 136

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L         KDA  E +       V+ E   FY+GF   L L    +M    +
Sbjct: 137 DSYYRKLDK-------KDATDEEIFMALSSSVLLETFLFYSGFFLPLWLAGQGQMGASCD 189

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             + I+ DES+H  F   +  +   +      +  ++  + +++     E+ Y  E    
Sbjct: 190 IIKKIIADESIHGVFVGLLAQEFFKKFTPEDQQRIEKNLKELMYVLYENELKYTDEVY-- 247

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETRV 340
             +GL+    ++Y+++ AN+    +G +  F+  E NP   +   ++++  + +FF  + 
Sbjct: 248 TEIGLS-GDVKEYIRYNANKALMNLGFDEEFEVKEVNPI--VLNGLNVETTQHDFFSKKS 304

Query: 341 TEYQQG 346
           T Y++ 
Sbjct: 305 TNYEKA 310


>gi|184154755|ref|YP_001843095.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           fermentum IFO 3956]
 gi|260663216|ref|ZP_05864108.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183226099|dbj|BAG26615.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|260552408|gb|EEX25459.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|299782855|gb|ADJ40853.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum CECT 5716]
          Length = 333

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 121/324 (37%), Gaps = 28/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + NQ+  +     WE         W+ T +P+ +DL  W+    L DD +  +    G  
Sbjct: 10  NWNQVSDMIDKATWE---KLTEQFWLDTRIPVSNDLDDWRE---LDDDHKWTVGHVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++L +   + A+ + +  P     L    F E+VH+ ++  I ++L   +   E+F+
Sbjct: 64  TLLDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIDEIFS 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  + +KA                               V  V  E   FY+GF  
Sbjct: 124 WSDSEEYLQSKAVKIGNLYLDAQEDPLKKK-------------VANVFLETFLFYSGFYT 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          +      ++ ++     L+E
Sbjct: 171 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGMNQLTEKQQQDMKRWMYDFLYE 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y H    +  +G        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 231 LYDNEEKYTHVLYDQ--IGWT-DDVLVFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
            +       +FF      Y+ GA 
Sbjct: 287 GISTTTSNHDFFSQVGNGYRLGAV 310


>gi|32709437|gb|AAP86737.1| NrdB [Enterobacteria phage TuIa]
          Length = 391

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 134/362 (37%), Gaps = 44/362 (12%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +    ++V+V ++ M            +   ++    E    + +  W P EV +  
Sbjct: 1   MSTVFN-TQQVDVLNEPMFFGSGLGLARYDIQ--RHKVFEELIEKSLSFFWRPEEVNLML 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   LS+P    ++    F 
Sbjct: 58  DSAQF---NKLPQFQQDIFTNNLKYQSLLDSIQGRAPSAVLMALLSDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +        + 
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGKYYDDVLVKTRHWENAKENY 174

Query: 184 EFL---------------------------QDLFVFYVVFEGMWFYTGFAQILSLGRAN- 215
           E                                       E + FY  FA   +  +   
Sbjct: 175 ECSIGSCQQNDIEMYEEIMFNAKHDLMKSLYLCLHVINALEAIRFYVSFACTFNFHKNME 234

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLL 271
            M G A+  ++I RDE LHL     +I Q++            KE +Q++  +  E    
Sbjct: 235 IMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVQIAKECEQEAVDIFMEVNSQ 294

Query: 272 EIAYAHETMPKGF-VGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVID 328
           E  +A      G   G+N  S   ++ ++   R  Q GL  P+    T++P+PW+ E ++
Sbjct: 295 EKEWAAHLFKDGTCPGINTQSMCAFVDYLTVSRMKQCGLPCPITDAPTKHPYPWIREYLN 354

Query: 329 LK 330
             
Sbjct: 355 SD 356


>gi|228861541|ref|YP_002854562.1| ribonucleotide reductase B subunit [Enterobacteria phage RB14]
 gi|227438557|gb|ACP30870.1| ribonucleotide reductase B subunit [Enterobacteria phage RB14]
          Length = 392

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 134/364 (36%), Gaps = 45/364 (12%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    E    + +  W P EV +  
Sbjct: 1   MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHRVFEELTEKSLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +       AD 
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKTRYWENAKADI 174

Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
           E+ ++                                    E + FY  FA   +  +  
Sbjct: 175 EYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234

Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
             M G A+  ++I RDE LHL     +I Q++            +E +Q++  +  E   
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDQWVKIAQECEQEAVDIFMEVNR 294

Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVI 327
            E  +A      G   GLN  S   ++ ++   R  Q GL  P+     ++P+PW+ E +
Sbjct: 295 QEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYL 354

Query: 328 DLKK 331
           +   
Sbjct: 355 NSDN 358


>gi|227514022|ref|ZP_03944071.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|227087608|gb|EEI22920.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
          Length = 333

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 120/324 (37%), Gaps = 28/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + NQ+  +     WE         W+ T +P+ +DL  W+    L DD +  +    G  
Sbjct: 10  NWNQVSDMIDKATWE---KLTEQFWLDTRIPVSNDLDDWRE---LDDDHKWTVGHVFGGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++L +   + A+ + +  P     L    F E+VH+ ++  I ++L   +   E+F+
Sbjct: 64  TLLDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIDEIFS 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  KA                               V  V  E   FY+GF  
Sbjct: 124 WSDSEEYLQNKAVKIGNLYLDAQEDPLKKK-------------VANVFLETFLFYSGFYT 170

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     NK+  +AE  + I+RDES+H  +          +      ++ ++     L+E
Sbjct: 171 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGMNQLTEKQQQDMKRWMYDFLYE 230

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y H    +  +G        ++++ AN+    +G +PLF  T    NP   M+
Sbjct: 231 LYDNEEKYTHVLYDQ--IGWT-DDVLVFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 286

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
            +       +FF      Y+ GA 
Sbjct: 287 GISTTTSNHDFFSQVGNGYRLGAV 310


>gi|195977892|ref|YP_002123136.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195974597|gb|ACG62123.1| ribonucleotide reductase of class Ib (aerobic) beta subunit NrdF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 319

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 116/322 (36%), Gaps = 30/322 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N++  +     WE         W+ T +P+ +DL  W+    L+  E+ ++ +  
Sbjct: 6   EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAVEKDLVGKVF 59

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
           G     +++ + + V AI + +  P     L    F E+VH+ ++  I ++L   +   +
Sbjct: 60  GGLTLLDTMQSESGVEAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIED 119

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           +F        +  KA       +  S+                         E   FY+G
Sbjct: 120 IFEWTNNNLFLQNKAKIINDIYKNGSALQKKV---------------ASTYLETFLFYSG 164

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L     NK+  +AE  + I+RDES+H  +          E      +  +     +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSDSEQESLRDWMYDL 224

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
           L++    E  Y         VG        ++++ AN+    +G +PLF       NP  
Sbjct: 225 LYQLYENEEQYTKTLY--DEVGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281

Query: 322 WMSEVIDLKKEKNFFETRVTEY 343
            M+ +       +FF      Y
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGY 302


>gi|27467432|ref|NP_764069.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866341|ref|YP_187991.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis RP62A]
 gi|251810165|ref|ZP_04824638.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875687|ref|ZP_06284558.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis SK135]
 gi|293368193|ref|ZP_06614822.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|27314975|gb|AAO04111.1|AE016745_210 ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57636999|gb|AAW53787.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus epidermidis RP62A]
 gi|251806217|gb|EES58874.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295714|gb|EFA88237.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis SK135]
 gi|291317616|gb|EFE58033.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329723280|gb|EGG59810.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis VCU144]
 gi|329736749|gb|EGG73014.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis VCU028]
 gi|329737954|gb|EGG74178.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           epidermidis VCU045]
          Length = 322

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 120/308 (38%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   LTD E+   K+ L      ++  A++ +  I
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LTDSEKNTFKKALAGLTGLDTHQADDGMPLI 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H ++   +      A  E +H+ ++ +I T+L       + +   V            
Sbjct: 73  MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPH----LKY 128

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            +  +         K+A         V  V  E   FY+GF   L L    KM    E  
Sbjct: 129 KSDKIVENYHKLWGKEASIYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      ++  Q+   +L+E    E++Y H       
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEMYKLLNELYDNEVSYTHLLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
           +GL A     Y+++  N+    +G EP F+  E NP   +   +D   K  +FF  +   
Sbjct: 247 IGL-AEDVLNYVRYNGNKALSNLGFEPYFEEREFNPI--IENALDTSTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YTLALNVE 311


>gi|15923722|ref|NP_371256.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15926409|ref|NP_373942.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus N315]
 gi|21282423|ref|NP_645511.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49482989|ref|YP_040213.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49485604|ref|YP_042825.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57651569|ref|YP_185668.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus COL]
 gi|82750436|ref|YP_416177.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus RF122]
 gi|87162072|ref|YP_493420.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88194508|ref|YP_499303.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|148267192|ref|YP_001246135.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150393241|ref|YP_001315916.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151220913|ref|YP_001331735.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156979060|ref|YP_001441319.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|161508997|ref|YP_001574656.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|221141144|ref|ZP_03565637.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|253315835|ref|ZP_04839048.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|253731358|ref|ZP_04865523.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253732821|ref|ZP_04866986.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|255005523|ref|ZP_05144124.2| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257424852|ref|ZP_05601279.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427520|ref|ZP_05603919.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430151|ref|ZP_05606535.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257432852|ref|ZP_05609212.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257435756|ref|ZP_05611804.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|257794947|ref|ZP_05643926.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9781]
 gi|258418263|ref|ZP_05682528.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A9763]
 gi|258421560|ref|ZP_05684485.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9719]
 gi|258430755|ref|ZP_05688467.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A9299]
 gi|258441753|ref|ZP_05691025.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A8115]
 gi|258445806|ref|ZP_05693983.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A6300]
 gi|258449617|ref|ZP_05697719.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A6224]
 gi|258452940|ref|ZP_05700934.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A5948]
 gi|258454017|ref|ZP_05701989.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A5937]
 gi|262049516|ref|ZP_06022386.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
           aureus D30]
 gi|262052319|ref|ZP_06024522.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
           aureus 930918-3]
 gi|269202352|ref|YP_003281621.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ED98]
 gi|282894500|ref|ZP_06302729.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A8117]
 gi|282903362|ref|ZP_06311253.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905140|ref|ZP_06312998.1| ribonucleoside-diphosphate reductase beta subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908118|ref|ZP_06315949.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282910377|ref|ZP_06318181.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913572|ref|ZP_06321361.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus aureus subsp. aureus M899]
 gi|282918525|ref|ZP_06326262.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C427]
 gi|282922028|ref|ZP_06329725.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9765]
 gi|282923491|ref|ZP_06331171.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282926597|ref|ZP_06334227.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A10102]
 gi|283957564|ref|ZP_06375017.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|284023753|ref|ZP_06378151.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus 132]
 gi|293500617|ref|ZP_06666468.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509565|ref|ZP_06668276.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|293524151|ref|ZP_06670838.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus aureus subsp. aureus M1015]
 gi|294849402|ref|ZP_06790145.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754]
 gi|295406453|ref|ZP_06816259.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819]
 gi|295427309|ref|ZP_06819944.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296275141|ref|ZP_06857648.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297208541|ref|ZP_06924970.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297245179|ref|ZP_06929053.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796]
 gi|297590338|ref|ZP_06948977.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MN8]
 gi|300912633|ref|ZP_07130076.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304381650|ref|ZP_07364299.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|4490610|emb|CAB38643.1| ribonucleotide reductase minor subunit [Staphylococcus aureus]
 gi|13700623|dbj|BAB41920.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           aureus subsp. aureus N315]
 gi|14246501|dbj|BAB56894.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|14329710|emb|CAC40668.1| ribonucleotide-diphosphate reductase beta chain [Staphylococcus
           aureus]
 gi|21203860|dbj|BAB94559.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49241118|emb|CAG39796.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49244047|emb|CAG42473.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57285755|gb|AAW37849.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus aureus subsp. aureus COL]
 gi|82655967|emb|CAI80371.1| ribonucelotide diphosphate reductase beta chain [Staphylococcus
           aureus RF122]
 gi|87128046|gb|ABD22560.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202066|gb|ABD29876.1| ribonucleotide-disphosphate reductase beta chain, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147740261|gb|ABQ48559.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149945693|gb|ABR51629.1| Ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150373713|dbj|BAF66973.1| ribonucleotide-diphosphate reductase beta chain [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156721195|dbj|BAF77612.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|160367806|gb|ABX28777.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253724883|gb|EES93612.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253729186|gb|EES97915.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|257272422|gb|EEV04545.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275713|gb|EEV07186.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257279348|gb|EEV09949.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257282267|gb|EEV12402.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284947|gb|EEV15066.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|257788919|gb|EEV27259.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9781]
 gi|257839056|gb|EEV63535.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A9763]
 gi|257842486|gb|EEV66910.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9719]
 gi|257849427|gb|EEV73397.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A9299]
 gi|257852222|gb|EEV76149.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A8115]
 gi|257855382|gb|EEV78320.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A6300]
 gi|257857125|gb|EEV80024.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A6224]
 gi|257859451|gb|EEV82305.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A5948]
 gi|257863882|gb|EEV86638.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus A5937]
 gi|259159759|gb|EEW44800.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
           aureus 930918-3]
 gi|259162352|gb|EEW46924.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
           aureus D30]
 gi|262074642|gb|ACY10615.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ED98]
 gi|269940309|emb|CBI48686.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282314359|gb|EFB44749.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282317659|gb|EFB48031.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C427]
 gi|282322604|gb|EFB52926.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325769|gb|EFB56077.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327783|gb|EFB58065.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282331965|gb|EFB61476.1| ribonucleoside-diphosphate reductase beta subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282591490|gb|EFB96562.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A10102]
 gi|282593686|gb|EFB98678.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9765]
 gi|282596317|gb|EFC01278.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282763213|gb|EFC03344.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A8117]
 gi|283470026|emb|CAQ49237.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus ST398]
 gi|283791015|gb|EFC29830.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|285816434|gb|ADC36921.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Staphylococcus aureus 04-02981]
 gi|290921114|gb|EFD98175.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291095622|gb|EFE25883.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467662|gb|EFF10177.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|294823934|gb|EFG40360.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754]
 gi|294968598|gb|EFG44621.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819]
 gi|295128697|gb|EFG58328.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296886796|gb|EFH25700.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297177850|gb|EFH37099.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796]
 gi|297576637|gb|EFH95352.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus MN8]
 gi|298694063|gb|ADI97285.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886879|gb|EFK82081.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302332442|gb|ADL22635.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|302750629|gb|ADL64806.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304339753|gb|EFM05698.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312438843|gb|ADQ77914.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|312829224|emb|CBX34066.1| ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
           reductase small subunit) [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129414|gb|EFT85407.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|315194351|gb|EFU24743.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus CGS00]
 gi|315196404|gb|EFU26755.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320139937|gb|EFW31798.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320141974|gb|EFW33802.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|323438919|gb|EGA96654.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus O11]
 gi|323441867|gb|EGA99507.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           aureus O46]
 gi|329313453|gb|AEB87866.1| Ribonucleoside-diphosphate reductase class Ib beta subunit
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329724628|gb|EGG61135.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 21172]
 gi|329728537|gb|EGG64970.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 323

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 119/308 (38%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   L++ E+   K+ L      ++  A++ +  +
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LSEAEQDTFKKALAGLTGLDTHQADDGMPLV 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H ++   +      A  E +H+ ++ +I T+L       + +   V            
Sbjct: 73  MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPH----LKY 128

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            +  + +       K+A         V  V  E   F++GF   L L    KM    E  
Sbjct: 129 KSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      ++  Q+   +L++  L E +Y         
Sbjct: 189 RKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
           +G+       Y+++  N+    +G EP F+  E NP   +   +D   +  +FF  +   
Sbjct: 247 LGIT-EDVLNYVKYNGNKALSNLGFEPYFEEREFNPI--IENALDTTTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YVLALNVE 311


>gi|329769048|ref|ZP_08260470.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325]
 gi|328839539|gb|EGF89115.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325]
          Length = 322

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 111/311 (35%), Gaps = 19/311 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE  +  D+  W     L D ER   K+ L      ++   +  +  +
Sbjct: 16  YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKERDAYKKVLAGLTGLDTQQGDKGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANW 161
             H  +   +         E +H+ ++  I TSL   +   +           +  KAN 
Sbjct: 74  SLHTEDMRKQAVYSFMGMMEQMHAKSYSTIFTSLIPSKETDYLLDEWVPNNAELQYKANL 133

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
              Y   L  P   T              V  V  E   FY+GF   L L    K+    
Sbjct: 134 IESYYMKLFKPEVKTYDL-------YMARVASVFLESYIFYSGFFYPLYLAGQGKVTTSG 186

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  + I+ DE++H +F      +I         ++ +++   +L +    E+ Y  +   
Sbjct: 187 EIIRKILLDETIHGSFTGFDAQEIFKTLTKEEQEKAKKEMYKLLLDLYENELKYTQDIY- 245

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETR 339
            G +GL     + Y+++ ANR    +G    F+  + NP   +   ++   K  +FF  +
Sbjct: 246 -GEIGL-YDEVKDYVEYNANRALANLGYPGYFEDKDINPI--IENAMNTSTKNHDFFSVK 301

Query: 340 VTEYQQGAELK 350
              Y     ++
Sbjct: 302 GDGYVVSMNVE 312


>gi|242242101|ref|ZP_04796546.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis W23144]
 gi|242234414|gb|EES36726.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis W23144]
 gi|319401190|gb|EFV89405.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           epidermidis FRI909]
          Length = 322

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 120/308 (38%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   LTD E+   K+ L      ++  A++ +  I
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LTDSEKNTFKKALAGLTGLDTHQADDGMPLI 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H ++   +      A  E +H+ ++ +I T+L       + +   V            
Sbjct: 73  MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPH----LKY 128

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            +  +         K+A         V  V  E   FY+GF   L L    KM    E  
Sbjct: 129 KSDKIVENYHKLWGKEASIYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      ++  Q+   +L+E    E++Y H       
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEMYKLLNELYDNEVSYTHLLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
           +GL A     Y+++  N+    +G EP F+  E NP   +   +D   K  +FF  +   
Sbjct: 247 IGL-ADDVLNYVRYNGNKALSNLGFEPYFEEREFNPI--IENALDTSTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YTLALNVE 311


>gi|282916074|ref|ZP_06323837.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus D139]
 gi|283769895|ref|ZP_06342787.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus H19]
 gi|282320022|gb|EFB50369.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus D139]
 gi|283460042|gb|EFC07132.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
           aureus subsp. aureus H19]
          Length = 323

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 119/308 (38%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   L++ E+   K+ L      ++  A++ +  +
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LSEAEQDTFKKALAGLTGLDTHQADDGMPLV 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H ++   +      A  E +H+ ++ +I T+L       + +   V            
Sbjct: 73  MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPH----LKY 128

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            +  + +       K+A         V  V  E   F++GF   L L    KM    E  
Sbjct: 129 KSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      ++  Q+   +L++  L E +Y         
Sbjct: 189 RKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
           +G+       Y+++  N+    +G EP F+  E NP   +   +D   +  +FF  +   
Sbjct: 247 LGIT-EDVLNYVKYNGNKALSNLGFEPYFEEREFNPI--IENALDTTTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YVLALNVE 311


>gi|37651592|ref|NP_932466.1| hypothetical protein 44RRORF111c [Aeromonas phage 44RR2.8t]
 gi|66391913|ref|YP_238838.1| hypothetical protein PHG31p109 [Aeromonas phage 31]
 gi|34732892|gb|AAQ81430.1| hypothetical protein 44RRORF111c [Aeromonas phage 44RR2.8t]
 gi|62114750|gb|AAX63598.1| hypothetical protein PHG31p109 [Aeromonas phage 31]
          Length = 323

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 54/327 (16%), Positives = 105/327 (32%), Gaps = 32/327 (9%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG-FFASSESL 95
           ++Y           +  W   E  + +D    ++   LT  E   I   L  F      +
Sbjct: 10  IRYPEFAALADEQMHAFWPWDEPVVDNDAQDLRT--KLTPGELNGITTVLKLFTIYERKV 67

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
             +     I R    PE  +     +  E   H+  +  +   L LD+   +  ++E   
Sbjct: 68  GEDYWTGRIARTFGRPEINRMATLFSAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKESEE 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL--- 211
           ++ +  +  +   ++S P                 F  +   EG   Y+ FA +      
Sbjct: 128 LSRRIQFVGK---SVSDPDDA------------KSFAAFTFIEGAVLYSSFAFLKHFQAQ 172

Query: 212 -GRANKMVGIAEQYQYIMRDESLH----LNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
               + M  I       + DE  H          +  ++   +     ++ +     M H
Sbjct: 173 ECGKDLMRNICRGVDLSVADEHHHSIGGAMLFRTLCREMMEHHKVDVREKLKDDIIAMAH 232

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSE 325
           +    E         +   G+ A     +++   N     +G +P+F+   NP   W   
Sbjct: 233 QVYDHESGIIDLVFAEPIDGITADELRIFVKSRINLCLENLGYDPIFEIESNPIASWFYR 292

Query: 326 VIDLKKEKNFFETRVTEYQQGAELKWD 352
            I+ KK  +FF    +EY     + WD
Sbjct: 293 TINAKKFHDFFTGSGSEYN----INWD 315


>gi|332018842|gb|EGI59398.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex
           echinatior]
          Length = 176

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 3/145 (2%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           ++ + GL      ++  N   + +L    +   + P++Y   W+ Y  A  + W   EV 
Sbjct: 33  ISQDHGLKNGVQLKEDFNPKLEPLLQEGPNRFVIFPIQYPDIWDMYKKAVASFWTIEEVS 92

Query: 61  MQD-DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
           +   D   W     L  DE+  I   L FFA+S+ +V  N++    + +  PE R +   
Sbjct: 93  LHKQDKKDWNE--KLNSDEKRFISHVLAFFAASDGIVNENLIEKFSQEVKIPEARCFYGF 150

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE 144
           Q   E +HS  +  +I +   D  E
Sbjct: 151 QIAIENIHSEMYSLLIETYISDPKE 175


>gi|258423381|ref|ZP_05686272.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9635]
 gi|257846442|gb|EEV70465.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus A9635]
          Length = 323

 Score =  122 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 119/308 (38%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   L++ E+   K+ L      ++  A++ +  +
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LSEAEQDTFKKALAGLTGLDTHQADDGMPLV 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H ++   +      A  E +H+ ++ +I T+L       + +   V            
Sbjct: 73  MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDVWVLEEPH----LKY 128

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            +  + +       K+A         V  V  E   F++GF   L L    KM    E  
Sbjct: 129 KSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      ++  Q+   +L++  L E +Y         
Sbjct: 189 RKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
           +G+       Y+++  N+    +G EP F+  E NP   +   +D   +  +FF  +   
Sbjct: 247 LGIT-EDVLNYVKYNGNKALSNLGFEPYFEEREFNPI--IENALDTTTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YVLALNVE 311


>gi|304373441|ref|YP_003856650.1| Ribonucleoside-diphosphate reductase beta chai [Mycoplasma
           hyorhinis HUB-1]
 gi|304309632|gb|ADM22112.1| Ribonucleoside-diphosphate reductase beta chai [Mycoplasma
           hyorhinis HUB-1]
 gi|330723642|gb|AEC46012.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           hyorhinis MCLD]
          Length = 344

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 127/358 (35%), Gaps = 39/358 (10%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
             +SP++    + N   + +     + N +   K    W        N W+P ++P+ +D
Sbjct: 15  ESVSPLEFALNKFNGKMRSV-----NWNVINDNKDLEVWN---RVVQNFWLPEKIPVSND 66

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           L  W++   L+   + +I R        +++ A    +A   +      +      AF  
Sbjct: 67  LETWRT---LSPTWKRVITRTFTGLTLLDTIQATIGDVAQIPYSQTDHEQVIYANFAFMV 123

Query: 125 AVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
            VH+ ++  I ++L   E   E         S+ A+A   + Y                 
Sbjct: 124 GVHARSYGTIFSTLCTSEEIEEAHEWVINTKSLQARAQALIPYYTGKD------------ 171

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
                   V   +  G   Y GF     L   +K+   ++  + I+RD+ +H  +     
Sbjct: 172 ---PLKSKVAAAMMPGFLLYGGFYLPFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKY 228

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            +   + P    +E ++    +L+E   LE  Y +E   +  VGL   + + +  + A +
Sbjct: 229 QKKVEKLPLKKQEEMKKFVFDLLYELIDLEKTYLNELYSE--VGLAEEAIK-FSVYNAGK 285

Query: 303 RCHQIGLEPLFKYTENPF-PWMSEVID--LKKEKNFFETRVTEYQQGAELK-----WD 352
               +G +  F   E    P +   +     +  +FF    + Y  G   +     WD
Sbjct: 286 FLQNLGYDSPFTEEETRIEPEIFNQLSARADENHDFFSGNGSSYVMGVSEETEDEDWD 343


>gi|170587050|ref|XP_001898292.1| ribonucleotide reductase 2 [Brugia malayi]
 gi|158594687|gb|EDP33271.1| ribonucleotide reductase 2, putative [Brugia malayi]
          Length = 288

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 79/224 (35%), Gaps = 4/224 (1%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
                  R   + + +L    +   + P+K+   W+ Y  A  + W   EV +  D   W
Sbjct: 33  ETATTTVRYESNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDW 92

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    L D ER  I R L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS
Sbjct: 93  E---NLNDGERHFISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENIHS 149

Query: 129 HTFQYIITSLGLDE-GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
             +  +I +   D+  + F  +              +   ++ +       +   +    
Sbjct: 150 EMYSKMIDTYIRDQKQKKFRKFCVTLCFLEINLSNYKKFTSMFNACIDAKQEYLTEALPV 209

Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
           DL          +       +L+     K+      + ++ R  
Sbjct: 210 DLIGINCKLMCQYIEYVADHLLTELHCAKIYHSDNPFDFMERIS 253



 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 90/250 (36%), Gaps = 18/250 (7%)

Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN----WALQYTQTLSS 171
               +     V   +   I+ +   +   +F +         K      W +        
Sbjct: 29  CGTYETATTTVRYESNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKD 88

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWF---YTGFAQILSLGRANKMVGIAEQYQYIM 228
                   D ++ F+  +  F+   +G+        F+Q + +  A    G     + I 
Sbjct: 89  YRDWENLNDGERHFISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENI- 147

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEF--------QQKSRTMLHEATLLEIAYAHETM 280
             E         + +Q + +                  +K  +M +     +  Y  E +
Sbjct: 148 HSEMYSKMIDTYIRDQKQKKFRKFCVTLCFLEINLSNYKKFTSMFNACIDAKQEYLTEAL 207

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
           P   +G+N     QY++++A+    ++    ++ +++NPF +M E I ++ + NFFE RV
Sbjct: 208 PVDLIGINCKLMCQYIEYVADHLLTELHCAKIY-HSDNPFDFM-ERISIEAKTNFFEKRV 265

Query: 341 TEYQQGAELK 350
           +EYQ+   L 
Sbjct: 266 SEYQKAGVLS 275


>gi|148543559|ref|YP_001270929.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri DSM 20016]
 gi|184152966|ref|YP_001841307.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri JCM 1112]
 gi|227363481|ref|ZP_03847603.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri MM2-3]
 gi|325681909|ref|ZP_08161427.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri MM4-1A]
 gi|148530593|gb|ABQ82592.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Lactobacillus reuteri DSM 20016]
 gi|183224310|dbj|BAG24827.1| ribonucleotide diphosphate reductase beta subunit [Lactobacillus
           reuteri JCM 1112]
 gi|227071495|gb|EEI09796.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri MM2-3]
 gi|324978553|gb|EGC15502.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri MM4-1A]
          Length = 339

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 118/328 (35%), Gaps = 30/328 (9%)

Query: 31  VNQLLPLKYGWAWEK-----YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           VNQ   + +    +      +       W+ T +P+ +D+  W+    L DD +  +   
Sbjct: 9   VNQYKAINWNEVSDMIDKATWEKLTEQFWLDTRIPVANDMDDWRE---LDDDHQWTVGHV 65

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
            G     +++ +   + A+   +  P     L    F E+VH+ ++  I ++L   +   
Sbjct: 66  FGGLTLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIK 125

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E+F        +  KA          S                    V  V  E   FY+
Sbjct: 126 EIFEWSDTEEYLQNKAVKIANMYLDPSQDPLKKK-------------VANVFLETFLFYS 172

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF   L     NK+  +AE  + I+RDES+H  +          +      ++ +     
Sbjct: 173 GFYTPLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGLRDRTEKQQQDMKDWMYN 232

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L+E    E  Y H    +  VG        ++++ AN+    +G +PLF  T    NP 
Sbjct: 233 FLYELYDNEEKYTHLLYDQ--VGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPV 289

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
             M+ +       +FF      Y+ GA 
Sbjct: 290 V-MNGISTSTSNHDFFSQVGNGYRMGAV 316


>gi|329738368|gb|AEB97332.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 1]
          Length = 310

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 115/313 (36%), Gaps = 20/313 (6%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
               E    +  N+W   E+    D       + LT +E    K    F A+++ L+   
Sbjct: 16  DDIRELRDLSIANNWNEFELCYSRDEKD---VDLLTPEELDFYKFVFAFLAAADDLIN-L 71

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
            +  +     + + + Y   Q   E VHS T+  +   L   +    +      +   K 
Sbjct: 72  DIGNLMTLFPHKDIQHYYAEQIRIETVHSRTYSLVQMILFKGDLHARD---RYVTEAIKD 128

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
               +    L+     T     ++  L  L       EG++F   FA I  L R N  V 
Sbjct: 129 PAIKKKIDWLNRVQVETDLTLPEKYILMILL------EGIFFVASFAAIAFLRRRNIFVV 182

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           + +    I RDE++H      + N    ++     K   ++   +  EA  +E  +    
Sbjct: 183 MCQSNDLISRDEAVHTTASCRIYNNWLGDHK----KPSAKRIHQLFKEAIEIECNFLASR 238

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKKEKNFFET 338
            P+    ++  + + ++++  +R    IG+  +F     +P  +   ++ + K  NFFE 
Sbjct: 239 APQASRLIDLEAIQSFVRYSGDRLLTAIGVPTIFDEPPPDP-SFPLTLMSIDKNVNFFEH 297

Query: 339 RVTEYQQGAELKW 351
           R T Y  G  +  
Sbjct: 298 RSTAYN-GNVIND 309


>gi|172039808|ref|YP_001799522.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           urealyticum DSM 7109]
 gi|171851112|emb|CAQ04088.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           urealyticum DSM 7109]
          Length = 334

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 112/308 (36%), Gaps = 33/308 (10%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +L    N W+P +VP+ +DL  W   N L+D ER +  R        +++ A    ++
Sbjct: 37  EVWLRLTANFWLPEKVPLSNDLPDW---NRLSDLERTLTMRVFTGLTLLDTMQATVGEIS 93

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             +              AF +AVH+ ++  + ++L       + ++   +   +  +   
Sbjct: 94  QIQDALTEHEEAVYTNIAFMQAVHARSYSSVFSTLSSTPAINDAYDWAVKNEVLQTRCRK 153

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L +                         V   +   +  Y GF   L       +   A
Sbjct: 154 VLVHYFGED---------------PLKRKVSATLLSSVLLYAGFYLPLHFSTRGVLSNTA 198

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RD+++H  +      +    +P     E    +  +L E   LE+ Y+ E   
Sbjct: 199 DMIRLILRDKAVHGYYSGYKFQRGIERHPE-RAAELSDFTHELLEELYQLELEYSTELYE 257

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI------DLKKEKNF 335
               GL     E+++++ AN+    +G  P++  +E     +S  I         +  +F
Sbjct: 258 --PFGL-MADVERFVKYNANKALMNLGYTPIYPGSETS---VSPEILSALTPGADENHDF 311

Query: 336 FETRVTEY 343
           F    + Y
Sbjct: 312 FSGSGSSY 319


>gi|48696469|ref|YP_024511.1| putative ribonucleotide reductase minor subunit [Staphylococcus
           phage K]
 gi|37729163|gb|AAO47530.1| ORF81 [Staphylococcus phage K]
 gi|119658118|gb|ABL87153.1| putative ribonucleotide reductase minor subunit [Staphylococcus
           phage 812]
 gi|182627942|gb|ACB89104.1| gp ORF111 [Staphylococcus phage A5W]
          Length = 349

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 122/345 (35%), Gaps = 27/345 (7%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWE-KYLSACNNHWMPTEVPMQDDLALWKSKN 72
            ++V   +K  +   ++ N    ++     +  +    +  W P E  +  DL+ W S  
Sbjct: 4   TQKVKQHNKNAVLKATNWN----IEDDGMSDIYWEQGISQFWTPEEFDVSRDLSSWNS-- 57

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            LT+ E+   K+ L      ++      +  +  H   P+ +         E +H+ ++ 
Sbjct: 58  -LTESEKNTYKKVLAGLTGLDTKQGGEGMNLVSYHEPRPKYQAVFAFMGGMEEIHAKSYS 116

Query: 133 YIITSLGLDEGELF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
           +I T+L  ++   +       E   +  KA +   Y   L  P+ T   +          
Sbjct: 117 HIFTTLLSNKETSYLLDTWVEENDFLKVKAQFIGYYYDQLLKPNPTIFDR-------YMA 169

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V     E   FY+GF   L L    +M         I +DE+ H +             
Sbjct: 170 KVASAFLESALFYSGFYYPLLLAGRGQMTQSGAIIYKITQDEAYHGSAVGLTAQYDYNLL 229

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                K+  +++  +L      E+AY H       +   +     Y+Q+  NR    +G 
Sbjct: 230 TEEEKKQADKETYELLDILYTNEVAYTHSLYDPLEL---SEDVINYVQYNFNRALQNLGR 286

Query: 310 EPLFKYTE-NPFPWMSEVIDLK--KEKNFFETRVTEYQQGAELKW 351
           E  F     NP   +    ++   +  +FF  +  +Y++   +K 
Sbjct: 287 EDYFNPEPYNPI--VENQTNVDRLRNVDFFSGKA-DYEKSTNIKD 328


>gi|329729655|gb|EGG66056.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 323

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 119/308 (38%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ TE  +  D+A WK+   L++ E+   K+ L      ++  A++ +  +
Sbjct: 16  FWRQNISQMWVETEFKVSKDIASWKT---LSETEQDTFKKALAGLTGLDTHQADDGMPLV 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H ++   +      A  E +H+ ++ +I T+L       + +   V            
Sbjct: 73  MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPH----LKY 128

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            +  + +       K+A         V  V  E   F++GF   L L    KM    E  
Sbjct: 129 KSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      ++  Q+   +L++  L E +Y         
Sbjct: 189 RKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDD-- 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
           +G+       Y+++  N+    +G EP F+  E NP   +   +D   +  +FF  +   
Sbjct: 247 LGIT-EDVLNYVKYNGNKALSNLGFEPYFEEREFNPI--IENALDTTTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YVLALNVE 311


>gi|269302771|gb|ACZ32871.1| ribonucleoside-diphosphate reductase beta subunit, truncated
           [Chlamydophila pneumoniae LPCoLN]
          Length = 159

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 90/143 (62%), Positives = 112/143 (78%), Gaps = 2/143 (1%)

Query: 10  IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +    KRV V  K ++N    DVNQL+P+KY WAWE YL+ C N+W+PTEVPM  D+ LW
Sbjct: 6   LDGKLKRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYRE 151
           HTF YI  SLGLDEGE+FN Y E
Sbjct: 125 HTFLYICESLGLDEGEVFNAYNE 147


>gi|194468106|ref|ZP_03074092.1| Ribonucleoside-diphosphate reductase [Lactobacillus reuteri 100-23]
 gi|194452959|gb|EDX41857.1| Ribonucleoside-diphosphate reductase [Lactobacillus reuteri 100-23]
          Length = 339

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 118/328 (35%), Gaps = 30/328 (9%)

Query: 31  VNQLLPLKYGWAWEK-----YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           VNQ   + +    +      +       W+ T +P+ +D+  W+    L DD +  +   
Sbjct: 9   VNQYKAINWNEVSDMIDKATWEKLTEQFWLDTRIPVANDMDDWRE---LDDDHQWTVGHV 65

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
            G     +++ +   + A+   +  P     L    F E+VH+ ++  I ++L   +   
Sbjct: 66  FGGLTLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIK 125

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E+F        +  KA          S                    V  V  E   FY+
Sbjct: 126 EIFEWSDTEEYLQNKAVKIANMYLDPSQDPLKKK-------------VANVFLETFLFYS 172

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF   L     NK+  +AE  + I+RDES+H  +          +      ++ +     
Sbjct: 173 GFYTPLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGLRDRTEKQQQDMKDWMYN 232

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L+E    E  Y H    +  VG        ++++ AN+    +G +PLF  T    NP 
Sbjct: 233 FLYELYDNEEKYTHLLYDQ--VGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPV 289

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
             M+ +       +FF      Y+ GA 
Sbjct: 290 V-MNGISTSTSNHDFFSQVGNGYRMGAV 316


>gi|30984468|ref|NP_851900.1| ribonucleotide reductase subunit 2 [Macacine herpesvirus 1]
 gi|28804676|dbj|BAC58080.1| ribonucleotide reductase small subunit [Cercopithecine herpesvirus
           1]
 gi|30844282|gb|AAP41458.1| small subunit of ribonucleotide reductase [Macacine herpesvirus 1]
          Length = 338

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/308 (23%), Positives = 117/308 (37%), Gaps = 32/308 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ +E+    D       +GLTDDE    +    F ++++ LV  N +  +       
Sbjct: 54  NRWLESELVFAGDEED---VHGLTDDELNFYRFLFTFLSAADDLVTEN-LGGLSGLFPQK 109

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E  +     P+I  K  W     Q
Sbjct: 110 DILHYYVEQEAIEVVHSRVYSIIQLVLFHNNEQARREYVSRTIHHPAIRVKVEWLEARVQ 169

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
              S                  F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 170 ACESVPEK--------------FILMILIEGIFFAASFAAIGFLRTNNLLRVTCQSNDLI 215

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K   ++   +  EA  +EI +     P     L
Sbjct: 216 SRDEAVHTTASCYIYNNYL----GGHRKPTAERVYRLFREAVDIEIGFIRSQAPANSRVL 271

Query: 288 NA---PSCEQYMQFIANRRCHQIGLEPLFKYTENPFP-WMSEVIDLKKEKNFFETRVTEY 343
           +A    + E Y++F A+R    I ++PLF     P P +   ++  +K  NFFE R T Y
Sbjct: 272 DAAALDAIENYVRFSADRLLVLIKMKPLFGAPA-PAPSFPLSLMSTEKHTNFFECRSTAY 330

Query: 344 QQGAELKW 351
             GA +  
Sbjct: 331 A-GAVVND 337


>gi|227545165|ref|ZP_03975214.1| ribonucleoside-diphosphate reductase [Lactobacillus reuteri
           CF48-3A]
 gi|300909160|ref|ZP_07126621.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri SD2112]
 gi|227184848|gb|EEI64919.1| ribonucleoside-diphosphate reductase [Lactobacillus reuteri
           CF48-3A]
 gi|300893025|gb|EFK86384.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           reuteri SD2112]
          Length = 339

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 118/328 (35%), Gaps = 30/328 (9%)

Query: 31  VNQLLPLKYGWAWEK-----YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           VNQ   + +    +      +       W+ T +P+ +D+  W+    L DD +  +   
Sbjct: 9   VNQYKAINWNEVSDMIDKATWEKLTEQFWLDTRIPVANDMDDWRE---LDDDHQWTVGHV 65

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
            G     +++ +   + A+   +  P     L    F E+VH+ ++  I ++L   +   
Sbjct: 66  FGGLTLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIK 125

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E+F        +  KA          S                    V  V  E   FY+
Sbjct: 126 EIFEWSDTEEYLQNKAVKIANMYLDPSQDPLKKK-------------VANVFLETFLFYS 172

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF   L     NK+  +AE  + I+RDES+H  +          +      ++ +     
Sbjct: 173 GFYTPLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGLRDRTEKQQQDMKDWMYN 232

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L+E    E  Y H    +  VG        ++++ AN+    +G +PLF  T    NP 
Sbjct: 233 FLYELYDNEEKYTHLLYDQ--VGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPV 289

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
             M+ +       +FF      Y+ GA 
Sbjct: 290 V-MNGISTSTSNHDFFSQVGNGYRMGAV 316


>gi|124487872|gb|ABN12019.1| putative ribonucleotide reductase R2 subunit [Maconellicoccus
           hirsutus]
          Length = 249

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 97/233 (41%), Gaps = 24/233 (10%)

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151
           +V +N+V    + +  PE R +   Q     +HS  +  +I SL  D  E   +FN    
Sbjct: 1   IVNDNLVKRFSQEVQVPEARAFFGFQISNAGIHSEMYSVLIESLIKDANEKNLIFNTIET 60

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           VP +  K +W L+               D    F   +   +   EG++F  G A I  L
Sbjct: 61  VPCVKKKKDWVLRRI------------ADDRVTFPLKVVA-FATVEGIFFAGGAAAIFWL 107

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                M G+    + I + ESL+ +F   +  ++         +   ++   ++ EA ++
Sbjct: 108 QEKGVMPGLTLSNELIRKGESLYTDFACLLFKRLVQ-------RPSVEEITEIIREAVII 160

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           E  ++ + +P   +G++      Y++F+A+R    +    +F    NPF +M 
Sbjct: 161 EQEFSTKGLPVSLIGMDCELMTTYIEFVADRLLQALNCPKVFGV-PNPFGFME 212


>gi|57790965|ref|YP_182369.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 1]
 gi|5918981|gb|AAD56212.1|AF168792_13 ribonucleotide reductase small subunit [Gallid herpesvirus 1]
          Length = 310

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 115/313 (36%), Gaps = 20/313 (6%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
               E    +  N+W   E+    D       + LT +E    K    F A+++ L+   
Sbjct: 16  DDIRELRDLSIANNWNEFELCYSRDEKD---VDLLTPEELDFYKLVFAFLAAADDLIN-L 71

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
            +  +     + + + Y   Q   E VHS T+  +   L   +    +      +   K 
Sbjct: 72  DIGNLMTLFLHKDIQHYYAEQIRIETVHSRTYSLVQMILFKGDLHARD---RYVTEAIKD 128

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
               +    L+     T     ++  L  L       EG++F   FA I  L R N  V 
Sbjct: 129 PAIKKKIDWLNRVQVETDLTLPEKYILMILL------EGIFFVASFAAIAFLRRRNIFVV 182

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           + +    I RDE++H      + N    ++     K   ++   +  EA  +E  +    
Sbjct: 183 MCQSNDLISRDEAVHTTASCRIYNNWLGDHK----KPSAKRIHQLFKEAIEIECNFLASR 238

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKKEKNFFET 338
            P+    ++  + + ++++  +R    IG+  +F     +P  +   ++ + K  NFFE 
Sbjct: 239 APQASRLIDLEAIQSFVRYSGDRLLTAIGVPTIFDEPPPDP-SFPLTLMSIDKNVNFFEH 297

Query: 339 RVTEYQQGAELKW 351
           R T Y  G  +  
Sbjct: 298 RSTAYN-GNVIND 309


>gi|13242410|ref|NP_077433.1| ribonucleotide reductase subunit 2 [Cercopithecine herpesvirus 9]
 gi|11036562|gb|AAG27191.1|AF275348_11 ribonucleotide reductase, small subunit [Cercopithecine herpesvirus
           9]
          Length = 311

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 35/320 (10%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
               E    + +N W+ T+  ++DD   ++    LT++E    K    F ++++ LV  N
Sbjct: 18  PDINELRSLSISNRWLETDFTLEDD---YQYIKCLTEEELSFYKFIFTFLSAADDLVNVN 74

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155
            + ++       +   Y L Q   E VHS  +      +      +         +   I
Sbjct: 75  -IGSLITLFKQKDIHHYYLEQECIEVVHSRIYSQIQLMLFEGDIFERLRYTEATIQDAYI 133

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
            AK +W                        + + ++  ++ EG++F + FA I       
Sbjct: 134 KAKVDW--------------LEYNVQMNPLIGEKYILMIIIEGIFFTSSFAAISYFRNNG 179

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
             V + +    I RDE++H +    + N           K    +   +  EA  +E  +
Sbjct: 180 LFVVMCQLNDLISRDEAVHTSASCCIYNNYI----SYKEKPAIPRIHQLFMEAVNIECNF 235

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKK 331
                PK    +N  +  QY+++ A+R    I +  LF       + P  +M+     +K
Sbjct: 236 ISAYAPKNQRIINIDAILQYVRYNADRLLSAINIPVLFNAPAPKADFPLAFMT----AEK 291

Query: 332 EKNFFETRVTEYQQGAELKW 351
             NFFE   T Y  GA +  
Sbjct: 292 HTNFFERHSTAY-TGAVIND 310


>gi|116333244|ref|YP_794771.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           brevis ATCC 367]
 gi|116098591|gb|ABJ63740.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Lactobacillus brevis ATCC 367]
          Length = 331

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 109/302 (36%), Gaps = 24/302 (7%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W++   L  D + ++    G     ++L + + + A+ 
Sbjct: 24  WEKLTEQFWLDTRIPVSNDLDDWRT---LDTDHQWVVGHVFGGLTLLDTLQSQDGMAALR 80

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           R +  P     L    F E+VH+ ++  I ++L   +   E+F        +  K     
Sbjct: 81  RDIRTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIDEIFQWSDSEEFLQNKTKRIY 140

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                   P                  +  V  E   FY+GF   L     NK+  +AE 
Sbjct: 141 DLYHDDEHPLKKK--------------ISSVFLETFLFYSGFFTPLYYLGHNKLNNVAEI 186

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E      ++ +      L++    E  Y H    + 
Sbjct: 187 IKLILRDESVHGTYIGYKFQLGMKELTDAEQQQMKDWMYDFLYQLYDNEEKYTHTLYDQ- 245

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFFETRVT 341
            +G        ++++ AN+    +G +PLF  T        M+ +       +FF     
Sbjct: 246 -IGWT-EKVLTFIRYNANKALMNLGQDPLFPDTAEDVDPVVMNGISTSTANHDFFSQVGN 303

Query: 342 EY 343
            Y
Sbjct: 304 GY 305


>gi|319957101|ref|YP_004168364.1| ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM
           16511]
 gi|319419505|gb|ADV46615.1| Ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM
           16511]
          Length = 337

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/338 (21%), Positives = 141/338 (41%), Gaps = 23/338 (6%)

Query: 21  DKRMLNARSDVNQ-LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           D+++              +Y W+   Y     N W P+EV   ++   +   + LTD+E+
Sbjct: 16  DEKIYGGNPTGFVDFNRPRYKWSVNLYDLMNANTWFPSEVNTANEKKHF---DLLTDNEQ 72

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
            + K      + ++S      +    R  +N   +  L  Q  +E  HS ++  ++ + G
Sbjct: 73  AIYKLTFAQLSFNDS-AQEEYLSDFRRLANNRLVKAALSLQIMQEVNHSKSYAVLLDAAG 131

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
             + E+F++Y+   ++  K            +  F         E +    +  V  EG+
Sbjct: 132 NSD-EVFDLYKHDAALNRK--------NQRIANQFARYIDGNSAEEMLLSAMASVNLEGI 182

Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKIENPHLWTKEFQ 258
           +F  GF+ I  LG  +K+ G  +  ++I RDE + HL    ++   I  EN    +   +
Sbjct: 183 YFLLGFSYIYVLG--DKVPGARDMIKFIARDEINTHLPLFANIFKTIYKENKIPASIVDK 240

Query: 259 QKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                M+ EA  +E+ Y    +     +GL     E+ +   AN R ++IGLEP+F+ T 
Sbjct: 241 A--YEMIQEAVDIELEYGKYLLENYPIMGLTDELMEKTVYNYANDRLNKIGLEPIFEETP 298

Query: 318 NPF--PWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
             +    + + + +     NFFE+ V  Y + +    D
Sbjct: 299 QTYLQKLVEKHLKMNDVRSNFFESNVANYAKNSLDLDD 336


>gi|281491477|ref|YP_003353457.1| ribonucleoside-diphosphate reductase subunit beta [Lactococcus
           lactis subsp. lactis KF147]
 gi|281375195|gb|ADA64708.1| Ribonucleoside-diphosphate reductase, beta chain [Lactococcus
           lactis subsp. lactis KF147]
          Length = 325

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 110/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +    +  W+ T VP+ +DL  W+    L   ER    +        ++L + +    + 
Sbjct: 30  WEKLTSQFWLDTRVPVSNDLDDWRKLPQL---ERDTFAKAFAGLTLLDTLQSVDGAEVLK 86

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
                P+         F E+VH+ ++  I ++L   +   ELFN       +  KA    
Sbjct: 87  HDARTPQEIACFNNIQFMESVHAKSYSTIFSTLNTKKEIEELFNWVDTNVYMQTKAEIIN 146

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  ++ +                       V  E   FY+GF   L     NKM+  AE 
Sbjct: 147 KIYESGTPLQKKV---------------ASVFLETCLFYSGFYTPLRYLGNNKMINSAEI 191

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E       EF+     +L++    E  Y+H    K 
Sbjct: 192 IKLIIRDESVHGTYIGYKFQLGFNELSEDEQGEFRDWMYELLYQLYENEEKYSHLLYDK- 250

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG        ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 251 -VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTAADVNPVV-MNGISTSSSNHDFFSQVG 307

Query: 341 TEY 343
             Y
Sbjct: 308 NSY 310


>gi|229823057|ref|ZP_04449126.1| hypothetical protein GCWU000282_00352 [Catonella morbi ATCC 51271]
 gi|229787496|gb|EEP23610.1| hypothetical protein GCWU000282_00352 [Catonella morbi ATCC 51271]
          Length = 336

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 107/303 (35%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W++   L+  ER ++ +  G     ++L +      + 
Sbjct: 39  WEKLTEQFWLDTRIPVSNDLDDWRT---LSMAERDVVAKAFGGLTLLDTLQSEEGAALMK 95

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
             +             F E+VH+ ++  I ++L       E+F        +  KA    
Sbjct: 96  DFVRTQHEEAVWNNIQFMESVHAKSYSTIFSTLNTKAEIEEIFEWTNTNEQLQYKAKKIN 155

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  Q+                    +     + E   FY+GF   L     NK+  +AE 
Sbjct: 156 EIYQS---------------GHGLKIKAASTMLETFLFYSGFFTPLYYLGNNKLANVAEI 200

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P     E +     +  +    E  Y      + 
Sbjct: 201 IKLIIRDESVHGTYTGYKFQLGYNELPEDQQAELKMWVYELCMDLYQNEAKYTQSLYDQ- 259

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG      + ++++ AN+    +G +PLF       +P   M+ +       +FF    
Sbjct: 260 -VGWT-EKVKVFIRYNANKALQNLGFDPLFPDTAEDVDPIV-MNGISTGTSNHDFFSQVG 316

Query: 341 TEY 343
             Y
Sbjct: 317 NGY 319


>gi|116511803|ref|YP_809019.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
           lactis subsp. cremoris SK11]
 gi|125624347|ref|YP_001032830.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|116107457|gb|ABJ72597.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Lactococcus lactis subsp. cremoris SK11]
 gi|124493155|emb|CAL98119.1| ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300071131|gb|ADJ60531.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 325

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 111/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +    +  W+ T VP+ +DL  W+    L   ER    +        ++L + +    + 
Sbjct: 30  WEKLTSQFWLDTRVPVSNDLDDWRKLPQL---ERDTFAKAFAGLTLLDTLQSVDGAEVLK 86

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
                P+         F E+VH+ ++  I ++L   +   ELFN       +  KA    
Sbjct: 87  HDARTPQEIACFNNIQFMESVHAKSYSTIFSTLNTKKEIEELFNWVDTNVYMQTKAEIIN 146

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  ++ ++                      V  E   FY+GF   L     NKM+  AE 
Sbjct: 147 KIYESGTALQKKV---------------ASVFLETCLFYSGFYTPLLYLGNNKMINSAEI 191

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E       EF+     +L++    E  Y+H    K 
Sbjct: 192 IKLIIRDESVHGTYIGYKFQLGFNELSEDEQSEFRDWMYELLYKLYENEENYSHLLYDK- 250

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG        ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 251 -VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTAADVNPVV-MNGISTSSSNHDFFSQVG 307

Query: 341 TEY 343
             Y
Sbjct: 308 NSY 310


>gi|325284717|ref|YP_004264180.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus
           MRP]
 gi|324316206|gb|ADY27320.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus
           MRP]
          Length = 348

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 110/305 (36%), Gaps = 22/305 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y    +  W P E+P+ +D  +WKS   L++ ER           + ++L     + A+
Sbjct: 24  FYEKYTSQLWFPEEIPLSNDAIVWKS---LSEAERWTYIHASAGLNALDTLQGEVGMPAL 80

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
              +     +  +  Q   E +H+ ++  +  +     +E E+F   R  P +  K    
Sbjct: 81  RHLVDGHIRKATIQFQGMMEDIHAKSYSLMNKTFLTTSEEREVFEWVRTQPQLQNKIAMI 140

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +        +     K           V   + E   FY+GF   L L    +MV   E
Sbjct: 141 REIYDNPDVSNLGLWKK----------MVVSCMLETALFYSGFFYPLYLAGQGRMVSAGE 190

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
            +  I+ DE++H  +   +  +   E                L +    E+AY       
Sbjct: 191 IFNLIIMDEAVHGVYVALLAQEKFAEMNEAEQAYALAWYEETLMKLYRNELAYTEMLYAD 250

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340
             VGL     ++++++  N     +G+E  F+  E NP   +   I  K    +FF  + 
Sbjct: 251 --VGL-VDEVKKFIRYNCNVLADNLGVERSFEDEEINPI--VRNGIKAKGTTHDFFSAKG 305

Query: 341 TEYQQ 345
             Y +
Sbjct: 306 NSYAK 310


>gi|199598384|ref|ZP_03211803.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus HN001]
 gi|199590703|gb|EDY98790.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus HN001]
          Length = 326

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 120/314 (38%), Gaps = 29/314 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+S   L+ DE+ ++    G     ++L + + + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGMASLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           +++   +    L    F E+VH+ ++  I ++L       E+F+       +  KAN   
Sbjct: 79  QNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKANKIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                 S+                      V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 DIYHNGSALQKKI---------------ASVFLETFLFYSGFFTPLYYLGNNKLTNVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ Q     +L++    E  Y ++   K 
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPAAEQQQLQDWMYDLLYDLYENEEKYTNDLYAKT 243

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
                      ++++ AN+    +G E  F  T    NP   M+ +       +FF    
Sbjct: 244 KW---TDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MNGISTSTANHDFFSQVG 299

Query: 341 TEYQQGA--ELKWD 352
             Y+ G    ++ D
Sbjct: 300 NGYRLGQVEAMEDD 313


>gi|15672956|ref|NP_267130.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
           lactis subsp. lactis Il1403]
 gi|12723917|gb|AAK05072.1|AE006332_1 ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis
           subsp. lactis Il1403]
 gi|326406518|gb|ADZ63589.1| ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis
           subsp. lactis CV56]
          Length = 325

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 110/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +    +  W+ T VP+ +DL  W+    L   ER    +        ++L + +    + 
Sbjct: 30  WEKLTSQFWLDTRVPVSNDLDDWRKLPQL---ERDTFAKAFAGLTLLDTLQSVDGAEVLK 86

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
                P+         F E+VH+ ++  I ++L   +   ELFN       +  KA    
Sbjct: 87  HDARTPQEIACFNNIQFMESVHAKSYSTIFSTLNTKKEIEELFNWVDTNVYMQTKAEIIN 146

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  ++ +                       V  E   FY+GF   L     NKM+  AE 
Sbjct: 147 KIYESGTPLQKKV---------------ASVFLETCLFYSGFYTPLRYLGNNKMINSAEI 191

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E       EF+     +L++    E  Y+H    K 
Sbjct: 192 IKLIIRDESVHGTYIGYKFQLGFNELSEDEQGEFRDWMYELLYQLYENEEKYSHLLYDK- 250

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            VG        ++++ AN+    +G +PLF       NP   M+ +       +FF    
Sbjct: 251 -VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTAADVNPVV-MNGISTSSSNHDFFSQVG 307

Query: 341 TEY 343
             Y
Sbjct: 308 NSY 310


>gi|322499081|emb|CBZ34153.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 269

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
             + N H+  K  +++   ++ +A  +E  +  + +P   +G+NA    QY++F+A+R  
Sbjct: 152 CLLYNSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEFVADRLL 211

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             +G E  ++ T+ PF +M E+I L+ + NFFE +V EYQ+   + 
Sbjct: 212 VSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 255


>gi|258508470|ref|YP_003171221.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus GG]
 gi|257148397|emb|CAR87370.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           rhamnosus GG]
 gi|259649782|dbj|BAI41944.1| ribonucleotide reductase beta subunit [Lactobacillus rhamnosus GG]
          Length = 326

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 120/314 (38%), Gaps = 29/314 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+S   L+ DE+ ++    G     ++L + + + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGMASLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           +++   +    L    F E+VH+ ++  I ++L       E+F+       +  KAN   
Sbjct: 79  QNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKANKIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                 S+                      V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 DIYHNGSALQKKI---------------ASVFLETFLFYSGFFTPLYYLGNNKLTNVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ Q     +L++    E  Y ++   K 
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEAEQQQLQDWMYDLLYDLYENEEKYTNDLYAKT 243

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
                      ++++ AN+    +G E  F  T    NP   M+ +       +FF    
Sbjct: 244 KW---TDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MNGISTSTANHDFFSQVG 299

Query: 341 TEYQQGA--ELKWD 352
             Y+ G    ++ D
Sbjct: 300 NGYRLGQVEAMEDD 313


>gi|229552273|ref|ZP_04440998.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539683|ref|YP_003174182.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus Lc 705]
 gi|229314345|gb|EEN80318.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151359|emb|CAR90331.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 326

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 120/314 (38%), Gaps = 29/314 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+S   L+ DE+ ++    G     ++L + + + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGMASLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           +++   +    L    F E+VH+ ++  I ++L       E+F+       +  KAN   
Sbjct: 79  QNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKANKIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                 S+                      V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 DIYHNGSALQKKI---------------ASVFLETFLFYSGFFTPLYYLGNNKLTNVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    ++ Q     +L++    E  Y ++   K 
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEAEQQQLQDWMYDLLYDLYENEEKYTNDLYAKT 243

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
                      ++++ AN+    +G E  F  T    NP   M+ +       +FF    
Sbjct: 244 KW---TDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MNGISTSTANHDFFSQVG 299

Query: 341 TEYQQGA--ELKWD 352
             Y+ G    ++ D
Sbjct: 300 NGYRLGQVEAMEDD 313


>gi|290992332|ref|XP_002678788.1| predicted protein [Naegleria gruberi]
 gi|284092402|gb|EFC46044.1| predicted protein [Naegleria gruberi]
          Length = 330

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 122/318 (38%), Gaps = 32/318 (10%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACN-NHWMPTEVP--MQDDLALWKSKNGLTDDE 78
           + +L+       L P++Y   WE Y      + W   +    +++D++     + + + +
Sbjct: 15  EEILSENPHRFTLFPIQYPKLWEIYKKRLASSIWSVEQFDQIIRNDIS---KLSEICNSD 71

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
              IK  L F  ++     N      ++ +   E + +   +   + +H   +  +   L
Sbjct: 72  HSFIKIILAFLVANCKQKTNLW--GAFKDIQILEAKHFHGFRLAMKNIHYEMYCNLFEIL 129

Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
             +      + + + S   K+ +  ++  +             D  F + L    V  E 
Sbjct: 130 TEETERSELIEKMINSTMKKSQYTKKWLNS-------------DNLFSERLIGL-VCIEQ 175

Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           ++    F  I  L +   M  +      I RDE  H NF   + + +K       +K  Q
Sbjct: 176 IFLSASFFSIFWLKKRGLMSALTISNDLIFRDEEFHSNFLYSLYSNLK------HSKLPQ 229

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
               +++ EA  +E  +   ++P   + L+  S  QY++ +++      G E LF +TEN
Sbjct: 230 TLVHSLVKEAVDIEKEFIT-SLPTELIELDRNSMYQYVEVVSDNILISFGYEKLF-HTEN 287

Query: 319 PFPWMSEVIDLKKEKNFF 336
              W+ +++    +  FF
Sbjct: 288 QCSWIQDMLM--NKSGFF 303


>gi|81428551|ref|YP_395551.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           sakei subsp. sakei 23K]
 gi|78610193|emb|CAI55242.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 318

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 114/308 (37%), Gaps = 27/308 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+S   L D+E+ ++    G     ++L + + + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWRS---LPDNEKWIVGHVFGGLTLLDTLQSQDGMASLK 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
            ++  P     L    F E+VH+ ++  I ++L       E+F+       +  KAN   
Sbjct: 79  ANIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTPNEIDEIFDWTNTNEYLQYKANKIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              Q  S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 SIYQNGSPLQQKI---------------ASVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E      +E Q     +L++    E  Y HE     
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELAKAEQEELQNWMYDLLYDLYANEEKYTHEVYDG- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
             G        Y+++ AN+    +G   LF       NP   ++ +       +FF    
Sbjct: 243 -TGWT-EEVLTYLRYNANKALMNLGQGALFPDTAEDVNPVV-LNGMSTSTANHDFFSQVG 299

Query: 341 TEYQQGAE 348
             Y+ G  
Sbjct: 300 NGYRLGNV 307


>gi|39938541|ref|NP_950307.1| ribonucleotide-diphosphate reductase subunit beta [Onion yellows
           phytoplasma OY-M]
 gi|39721650|dbj|BAD04140.1| ribonucleotide reductase beta subunit [Onion yellows phytoplasma
           OY-M]
          Length = 350

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 125/330 (37%), Gaps = 24/330 (7%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           ++ N L   KY      Y    +  W P ++ +Q DLA W   + LT +E+    RNL  
Sbjct: 19  ANWNVLED-KYTHF--FYEQNLSQFWRPEDISLQGDLAAW---SELTLEEKTAYSRNLLV 72

Query: 89  FASSESLVANNIVLAIYRHLSNPECR---QYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
               ++   +  +  I R L   E +         A E AVH+ ++  I  S   ++   
Sbjct: 73  LTFLDTYQGDLGMPVIARSLEEHEHQKKATLNFMGAMENAVHAKSYSNIFMSYLTNKEIN 132

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTT------GTKDADQEFLQDLFVFYVVFE 197
           +LF    +  S+       ++  + L    +         ++   ++         V  E
Sbjct: 133 QLFLWGNQQTSLQTMMQVIVKVYEALEDQIYLKKQSSLQFSELEFKKTQWQAMAVSVFLE 192

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
              FY+GF   L      K++   E    I+RDES+H  +   +  +I         +  
Sbjct: 193 TWLFYSGFYYSLYFYGQGKLMQSGEIINLIIRDESIHGVYVGRLATEIYQLFDKPTQQTL 252

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP-SCEQYMQFIANRRCHQIGLEPLFKYT 316
           +     ++ +    + +  H    K    LN      +++++ AN+    +G +  F  +
Sbjct: 253 KTWLDDLMQQLYQAQTSLVHAIYHK----LNLEDDVNKFVRYNANKALMNLGFDAFFP-S 307

Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345
           EN  P +   ++ + +  + F  +   YQ+
Sbjct: 308 ENVNPVIINGLNTETKTMDNFSMKGNGYQK 337


>gi|15606660|ref|NP_214040.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5]
 gi|18202109|sp|O67475|RIR2_AQUAE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit;
           Contains: RecName: Full=Aae nrdB intein; AltName:
           Full=Aae RIR2 intein
 gi|2983879|gb|AAC07431.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5]
          Length = 696

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 118/270 (43%), Gaps = 15/270 (5%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSA-CNNHWMPTEV 59
            N      I   +       ++++     ++ +L  +KY WA++ Y      N W+P E+
Sbjct: 6   KNELVRKLIFNPQGDREASKRKIIKGNPTNIFELNEIKYSWAFDLYKLMGFTNFWIPEEI 65

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
            M +D   +++   L+D E+   +  L F  + +S   + ++    R ++ PE    +  
Sbjct: 66  QMLEDRKQYETV--LSDYEKRAYELVLSFLIALDSFQVD-MLKEFGRMITAPEVEMAITA 122

Query: 120 QAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
           Q F+E+VH++++Q+I+ S+       E++N +RE   +  +          + +  +   
Sbjct: 123 QEFQESVHAYSYQFILESVVDPVKADEIYNYWREDERLLER--------NKVIAELYNEF 174

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
            +  ++E      +   + E ++FY+GFA   +LGR  KM    +Q +YI RDE   +  
Sbjct: 175 IRKPNEENFIKATIGNYILESLYFYSGFAFFYTLGRQGKMRNTVQQIKYINRDELCFIEG 234

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              +  +  ++   L   +   +      E
Sbjct: 235 TEVLTKRGFVDFRELREDDLVAQYDIETGE 264



 Score = 99.5 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           + H+    ++IN ++ ENP L+T E ++        A   EI +         +G+N   
Sbjct: 575 NCHVTLFRNIINTLRKENPELFTPEIEKWIVEYFKYAVNEEIKWGQYVTQNQILGINDVL 634

Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEV--IDLKKEKNFFETRVTEYQQGAE 348
            E+Y++++ N R  QIG +P++   TENP  W+ E   I+   + +FF+ +   Y +  E
Sbjct: 635 IERYIKYLGNLRITQIGFDPIYPEVTENPLKWIDEFRKIN-NTKTDFFQAKPQTYSKANE 693

Query: 349 LKW 351
           LKW
Sbjct: 694 LKW 696


>gi|319440691|ref|ZP_07989847.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           variabile DSM 44702]
          Length = 335

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 119/336 (35%), Gaps = 40/336 (11%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W+      +N W+P ++P+ +DL  W+    L+DDER +  R     
Sbjct: 26  NWNRIEDAKDLEVWQ---RLTSNFWLPEKMPLSNDLPDWR---ALSDDERTLTARVFTGL 79

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++ A    ++          +      AF +AVH+ ++             +F+  
Sbjct: 80  TLLDTVQATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYS-----------SVFSTM 128

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
                I     WA+   +     +        D    + +    +    ++   GF   L
Sbjct: 129 CSSAEIEDAYTWAIDNRRLQPRATAVMAHYAGDDPLKRKVASTLLSSLLLY--AGFYLPL 186

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                  M+  A+  + I+RD+++H  +      +    +P     E +  +     E  
Sbjct: 187 WYSSRGVMMNTADMIRLILRDKAVHGYYSGYKYQRGLDAHPE-RVAEMEDFTYRFTAELL 245

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
            LE  Y+ +    G   L+    + ++ + A++    +G  P ++       P     E+
Sbjct: 246 ALENEYSRDLYSLGS--LDYAGVDAFVHYNADKALMNLGYGPQYEDAAAGVEP-----EI 298

Query: 327 I-----DLKKEKNFFETRVTEYQQG-----AELKWD 352
           I     D  +  +FF    + Y  G      E  WD
Sbjct: 299 IAALTPDSSETHDFFSGSGSSYVMGRAEVTEEDDWD 334


>gi|311992967|ref|YP_004009834.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage
           Acj61]
 gi|295815256|gb|ADG36182.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage
           Acj61]
          Length = 377

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 124/342 (36%), Gaps = 23/342 (6%)

Query: 10  IQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +   +   + M     + + +    K+       + A +  W P E+ +  D + +
Sbjct: 3   VFNRDSNYDYAQQPMFFGESTSIARYESPKHPTIENLTVQALSFFWRPEEINLTTDSSQF 62

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           K    L   ++     NL + A  +++  +     +    S+     ++    F E +HS
Sbjct: 63  K---KLHPRDQRTFTLNLLYQAIMDTVQGSAPSEILGPICSDIGLDTWIQTWTFFETIHS 119

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS------SPSFTTGTKDAD 182
            ++ +II +L  +  E+F+       I A+A    +Y   L       S     G    +
Sbjct: 120 RSYTHIIRNLYNNPTEIFDSVVLDDQIMARAASICKYYDELEIKWTLYSADKIRGIATEE 179

Query: 183 QEFLQD-----LFVFYVVFEGMWFYTGFAQILSLGRANK-MVGIAEQYQYIMRDESLHLN 236
           Q +                E + F+  F    +     K M G ++   +I RDE+LH  
Sbjct: 180 QLYELKKAFYLCLHTINALEAIRFFVSFINTFNFFETQKVMEGNSKIMTFIARDENLHHQ 239

Query: 237 FGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
               +I   Q   E P      +E ++++  +       E  +       G   GL+   
Sbjct: 240 GTRYMIKRLQSGEEGPEWIKIAEECREEATNIFLATNEQEKEWCKYVYQSGAPQGLSVGL 299

Query: 292 CEQYMQFIANRRCHQIGLE--PLFKYTENPFPWMSEVIDLKK 331
              Y+ +    R +++GL+   +     NPFPW+++ +    
Sbjct: 300 VSDYIDYATVPRMNELGLDSSSIVAPKRNPFPWLTKFLKSNT 341


>gi|323341317|ref|ZP_08081561.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           ruminis ATCC 25644]
 gi|323091194|gb|EFZ33822.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           ruminis ATCC 25644]
          Length = 317

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 121/331 (36%), Gaps = 33/331 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L        WE         W+ T +P+ +DL  WK    + ++E  ++++  G  
Sbjct: 9   NWNVLDDALDKAVWE---KLTEQFWLDTRIPLSNDLNDWK---KMKEEEHALVEKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              ++L + + + A+ +          L    F E+VH+ ++  I ++L       E+F 
Sbjct: 63  TLLDTLQSVDGMSALKKDALTSHEAAVLNNIEFMESVHAKSYSSIFSTLNTPAEIEEIFE 122

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +   +  KA       +   +                      V  E   FY+GF  
Sbjct: 123 WTEKNEYLQYKAEKICAIYRGDDALMKK---------------AASVFLESFLFYSGFYA 167

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L     N++  +AE  + I+RDES+H  +                 ++ + +   +L++
Sbjct: 168 PLYFLGHNRLNNVAEIIKLILRDESVHGTYIGYKFQIRYRALAEEEQEKLKFEIVNLLYD 227

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
               E  Y HE      +G        ++++ AN+    +G EPLF+ T    NP   M+
Sbjct: 228 LYQNEEKYTHELY--DELGWT-EDVGIFLRYNANKALMNLGFEPLFEETATDVNPVV-MN 283

Query: 325 EVIDLKKEKNFFETRVTEYQQGAE---LKWD 352
            +       +FF      Y  G+       D
Sbjct: 284 GISTSTSNHDFFSQVGNGYLLGSVEAMGDDD 314


>gi|319891738|ref|YP_004148613.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161434|gb|ADV04977.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323465093|gb|ADX77246.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
           pseudintermedius ED99]
          Length = 320

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 114/308 (37%), Gaps = 14/308 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W+ TE  +  D+A WKS   LT+ E+   K+ L      ++  A++ +  I
Sbjct: 16  FWRQNIAQMWVETEFKVSKDIASWKS---LTEAEQDTFKKALAGLTGLDTHQADDGMPLI 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H  +   +         E +H+ ++ +I T+L   +     +   V            
Sbjct: 73  MLHTQDLRKKAVYSFMGMMEQIHAKSYSHIFTTLLPSKETDELLDVWVLEEPH----LKY 128

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            ++ +         K+A         V  V  E   F++GF   L L    +M    E  
Sbjct: 129 KSEKIVGTYHKLWGKEASIYDQYMARVASVFLETFLFFSGFYYPLYLAGQGRMTTSGEII 188

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DES+H  F       ++ E      ++  ++   +L +    E +Y         
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSESEKQKADKEMYQLLEDLYANEASYTRSLY--DP 246

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
           +GL       Y+++  N+    +G EP F+  E +P   +   +D   K  +FF  +   
Sbjct: 247 IGLT-DDVMNYVRYNGNKALSNLGFEPYFEEREFSPI--IENALDTSTKNHDFFSVKGDG 303

Query: 343 YQQGAELK 350
           Y     ++
Sbjct: 304 YVLALNVE 311


>gi|42561374|ref|NP_975825.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           mycoides subsp. mycoides SC str. PG1]
 gi|42492872|emb|CAE77467.1| ribonucleoside-diphosphate reductase 2 beta chain [Mycoplasma
           mycoides subsp. mycoides SC str. PG1]
 gi|301321363|gb|ADK70006.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           mycoides subsp. mycoides SC str. Gladysdale]
          Length = 339

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 113/326 (34%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL+ W+S   L+ + + ++ R     
Sbjct: 30  NWNVINDEKDLEVWN---RITQNFWLPEKIPVSNDLSSWRS---LSSEWQQLVTRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A   H      +      AF   VH+ ++  I ++L   E   E   
Sbjct: 84  TLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +  ++  +A   + Y                         V   +  G   Y GF  
Sbjct: 144 WVVKTETLQKRAKALIPYYTGTD---------------PLKSKVAAALMPGFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      +   + P     E ++    +L+E
Sbjct: 189 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLPVEKQTEMKEFVFKLLYE 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +        ++  + A +    +G +  F   E    P +   
Sbjct: 249 LIDLETAYLKELYAGFDI---VDDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 305

Query: 327 ID--LKKEKNFFETRVTEYQQGAELK 350
           +     +  +FF    + Y  G  ++
Sbjct: 306 LSARADENHDFFSGNGSSYVMGVSVE 331


>gi|32491358|ref|NP_871612.1| ribonucleotide-diphosphate reductase subunit beta [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|25166565|dbj|BAC24755.1| nrdF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 324

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 115/324 (35%), Gaps = 27/324 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W    +   N W+P ++P+ +D+  WK    L+ +E+ +  R     
Sbjct: 15  NWNRIEDEKDLEVWNHVTT---NFWLPEKIPLSNDIQSWK---MLSKEEKKLTIRIFTGL 68

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              ++L       +I         +  +    F EAVH+ ++  I ++L           
Sbjct: 69  TLLDTLQNIIGAPSIMMDAKTMHEKAVISNIGFMEAVHARSYSSIFSTLCSTT-----EV 123

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
                 + K  +       +S       +            +  V  E   FY+GF   +
Sbjct: 124 DSAYFWSEKNKFLQNKVNIISKIYLEKNSLKKK--------IASVFLESFLFYSGFYLPM 175

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
                 K+   ++  + I+RDE++H  +      +  I       K  +  +  +L++  
Sbjct: 176 FYSSRGKLTNTSDLIRLIIRDEAVHGYYIGYKFQKDLISLNEKEKKNIKDFAFNLLYKLY 235

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
             EI Y++             +   ++ + AN+    +G E  F   E   NP   +S +
Sbjct: 236 ENEINYSYSLYKDIIP---IKNIISFLNYNANKSLMNLGYEQYFPDDESLVNP-DILSAL 291

Query: 327 I-DLKKEKNFFETRVTEYQQGAEL 349
             +  +  +FF    + Y  G  +
Sbjct: 292 TPNSNENHDFFSGSGSSYVMGKTV 315


>gi|331703804|ref|YP_004400491.1| ribonucleoside diphosphate reductase 2 betachain [Mycoplasma
           mycoides subsp. capri LC str. 95010]
 gi|256383837|gb|ACU78407.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|256384668|gb|ACU79237.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           mycoides subsp. capri str. GM12]
 gi|296455270|gb|ADH21505.1| ribonucleoside-diphosphate reductase, beta subunit [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
 gi|328802359|emb|CBW54513.1| Ribonucleoside diphosphate reductase 2 betachain [Mycoplasma
           mycoides subsp. capri LC str. 95010]
          Length = 339

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 113/326 (34%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL+ W+S   L+ + + ++ R     
Sbjct: 30  NWNVINDEKDLEVWN---RITQNFWLPEKIPVSNDLSSWRS---LSSEWQQLVTRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A   H      +      AF   VH+ ++  I ++L   E   E   
Sbjct: 84  TLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +  ++  +A   + Y                         V   +  G   Y GF  
Sbjct: 144 WVVKTETLQKRAKALIPYYTGTD---------------PLKSKVAAALMPGFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      +   + P     E ++    +L+E
Sbjct: 189 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLPVEKQAEMKEFVFKLLYE 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +        ++  + A +    +G +  F   E    P +   
Sbjct: 249 LIDLETAYLKELYAGFDI---VDDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 305

Query: 327 ID--LKKEKNFFETRVTEYQQGAELK 350
           +     +  +FF    + Y  G  ++
Sbjct: 306 LSARADENHDFFSGNGSSYVMGVSVE 331


>gi|269941513|emb|CBI49911.1| ribonucleoside-diphosphate reductase subunit [Staphylococcus aureus
           subsp. aureus TW20]
          Length = 340

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 110/304 (36%), Gaps = 14/304 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E     DL++WK+   L+ DE+    + L      ++      +  +
Sbjct: 22  YWKQNVKQMWTEEEFKPSKDLSVWKT---LSADEQETYVKALSGLTGLDTTQGTEGMPLL 78

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
             H      R      +  E +H  ++ +I TSL   +   + +   VP+      +  +
Sbjct: 79  AFHYPEEIWRGVFAFMSMMENIHHKSYSHIFTSLLERKDTHYYLKEWVPANK----YLNK 134

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
            T+ +++  +     +     +       +  E   F++GF   L L    KMV   E  
Sbjct: 135 KTKLITTNYYKLLKPNPTDREIYVAMASSIFLESFLFFSGFYYPLYLAGQGKMVHSGEII 194

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I+ DE++H +        I  +      ++ +++   +  +    E+ YA     K  
Sbjct: 195 RKIILDETIHGSGTGYAAQVIFEKFSKEEQEDIRKELMELFDQLYFNEVEYAASLYDK-- 252

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETRVTE 342
           +GL      +Y+Q+  NR    +G E +F     NP   +   +       +FF  +   
Sbjct: 253 LGLT-EDVIRYIQYNGNRALMNLGWETVFNPEPFNPI--VENGLRTDTTNHDFFSVKGDG 309

Query: 343 YQQG 346
           Y   
Sbjct: 310 YTLA 313


>gi|32709433|gb|AAP86735.1| NrdB [Enterobacteria phage U5]
          Length = 391

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/363 (18%), Positives = 132/363 (36%), Gaps = 44/363 (12%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +    K+V+V  + M            +   ++    E    + +  W P EV +  
Sbjct: 1   MSTVFN-TKQVDVLTEPMFFGSGLGIARYDIQ--RHRVFEELIEKSLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +        + 
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLVKTREWENAKENY 174

Query: 184 EFL---------------------------QDLFVFYVVFEGMWFYTGFAQILSLGRAN- 215
           E                                       E + FY  FA   +  +   
Sbjct: 175 ESSIGSCQQNDIEMYEEIMFNAKRDLMKSLYLCLHVINALEAIRFYVSFACTFNFHKNME 234

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLL 271
            M G A+  ++I RDE LHL     +I Q++            +E +Q++  +  E    
Sbjct: 235 IMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVKIAQECEQEAVDIFMEVNRQ 294

Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVID 328
           E  +A      G   GLN  S   ++ ++   R  Q GL  P+     ++P+PW+ E ++
Sbjct: 295 EKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYLN 354

Query: 329 LKK 331
              
Sbjct: 355 SDN 357


>gi|259502687|ref|ZP_05745589.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM
           16041]
 gi|259169332|gb|EEW53827.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM
           16041]
          Length = 339

 Score =  119 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 120/334 (35%), Gaps = 32/334 (9%)

Query: 31  VNQLLPLKYGWAWEK-----YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           +NQ   + +    +      +       W+ T +P+ +DL  W+    L +D +  +   
Sbjct: 9   LNQYKAINWNEVSDMIDKATWEKLTEQFWLDTRIPVSNDLDDWR---NLDEDHQWTVGHV 65

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
            G     +++ +   + A+   +        L    F E+VH+ ++  I ++L   +   
Sbjct: 66  FGGLTLLDTVQSEAGMTALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNSPDEID 125

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E+FN       +  KA          +                    V  V  E   FY+
Sbjct: 126 EIFNWSDTEEYLQNKATKIANMYLNPAEDPLKKK-------------VANVFLETFLFYS 172

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF   L     N++  +AE  + I+RDES+H  +          E      ++ +     
Sbjct: 173 GFYTPLYYLGHNELNNVAEIIKLILRDESVHGTYVGYKFQVGLHERTEKQQQDMKDWMYN 232

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L+E    E  Y H    K  +G        ++++ AN+    +G +PLF  T    NP 
Sbjct: 233 FLYELYDNEEKYTHLLYDK--IGWT-DDVLTFIRYNANKALMNLGQDPLFPDTATDVNPV 289

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
             M+ +       +FF      Y+ G    +K D
Sbjct: 290 V-MNGISTSTSNHDFFSQVGNGYRLGEVEAMKDD 322


>gi|57867410|ref|YP_189075.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
           epidermidis RP62A]
 gi|57638068|gb|AAW54856.1| ribonucleoside-diphosphate reductase 2, beta subunit
           [Staphylococcus epidermidis RP62A]
          Length = 340

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 111/307 (36%), Gaps = 14/307 (4%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
           A   +       W   E     DL++WK+   L+ DE+    + L      ++      +
Sbjct: 19  ALTYWKQNVKQMWTEEEFKPSKDLSVWKT---LSADEQETYVKALSGLTGLDTTQGTEGM 75

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
             +  H      R      +  E +H  ++ +I TSL   +   + +   VP+      +
Sbjct: 76  PLLAFHYPEEIWRGVFAFMSMMENIHHKSYSHIFTSLLERKDTHYYLKEWVPANK----Y 131

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
             + T+ +++  +     +     +       +  E   F++GF   L L    KMV   
Sbjct: 132 LNKKTKLITTNYYKLLKPNPTDREIYVAMASSIFLESFLFFSGFYYPLYLAGQGKMVHSG 191

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  + I+ DE++H +        I  +      ++ +++   +  +    E+ YA     
Sbjct: 192 EIIRKIILDETIHGSGTGYAAQVIFDKFSKEEQEDIRKELMELFDQLYFNEVEYAASLYD 251

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETR 339
           K  +GL      +Y+Q+  NR    +G E +F     NP   +   +       +FF  +
Sbjct: 252 K--LGLT-EDVIRYIQYNGNRALMNLGWETVFNPEPFNPI--VENGLRTDTTNHDFFSVK 306

Query: 340 VTEYQQG 346
              Y   
Sbjct: 307 GDGYTLA 313


>gi|85057306|ref|YP_456222.1| ribonucleotide-diphosphate reductase subunit beta [Aster yellows
           witches'-broom phytoplasma AYWB]
 gi|84789411|gb|ABC65143.1| ribonucleoside-diphosphate reductase beta chain [Aster yellows
           witches'-broom phytoplasma AYWB]
          Length = 350

 Score =  119 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 123/330 (37%), Gaps = 24/330 (7%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           ++ N L   KY      Y    +  W P ++ +Q DLA W   + LT +E+    RNL  
Sbjct: 19  ANWNVLED-KYTHF--FYEQNLSQFWRPEDISLQGDLAAW---SELTIEEKTAYSRNLLV 72

Query: 89  FASSESLVANNIVLAIYRHLSNPECR---QYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
               ++   +  +  I R L   E +         A E AVH+ ++  I  S   ++   
Sbjct: 73  LTFLDTYQGDLGMPIIARSLEEHEHQKKATLNFMGAMENAVHAKSYSNIFMSYLTNKEIN 132

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD------ADQEFLQDLFVFYVVFE 197
           +LF    +  S+       ++  + L    +              ++         V  E
Sbjct: 133 QLFLWGNQQKSLQTMMQVIVKVYEALEDQIYLKKQTSLQFIELEFKKTQWKAMAVSVFLE 192

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
              FY+GF   L      K++   E    I+RDES+H  +   +  ++         +  
Sbjct: 193 TWLFYSGFYYPLYFYGQGKLMQSGEIINLIIRDESIHGVYVGRLATELYQLFDKPTKQTL 252

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP-SCEQYMQFIANRRCHQIGLEPLFKYT 316
           +     ++ +    + +  +    K    LN      +++++ AN+    +G +  F  +
Sbjct: 253 KTWLDDLMQQLYQTKTSLVNAIYHK----LNLEDDVNKFVRYNANKALMNLGFDAFFP-S 307

Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345
           EN  P +   ++ + +  + F  +   YQ+
Sbjct: 308 ENVNPVIINGLNTETKTMDNFSMKGNGYQK 337


>gi|10957415|ref|NP_051641.1| ribonucleotide-diphosphate reductase subunit beta [Deinococcus
           radiodurans R1]
 gi|6460844|gb|AAF12548.1|AE001826_17 ribonucleoside-diphosphate reductase, beta chain [Deinococcus
           radiodurans R1]
          Length = 354

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 107/308 (34%), Gaps = 22/308 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y    +  W P E+P+ +D   WK+   L+D+ER           + ++L     +  +
Sbjct: 43  FYAKYTSQLWFPEEIPLTNDALAWKT---LSDEERWTYIHASAGLNALDTLQGEVGMPRL 99

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
              +     +  L  Q   E +H+ ++  +  +     +E E+F   R  P +  K    
Sbjct: 100 RDLVDGHIRKATLQFQGMMEDIHARSYSLMNKTFLTASEEREVFEWVRTQPQLQHKIAVI 159

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
               +           K           V   + E   FY+GF   L L    +MV   E
Sbjct: 160 QGVYRDPDVSDLGVWKK----------LVVSCMLETALFYSGFFYPLYLAGQGQMVSAGE 209

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
            +  I+ DE+LH  +   +  +           + Q      L      E+AY  +    
Sbjct: 210 IFNLIILDEALHGVYVALLAQEKFATMNAAEQADAQAWFDDTLQALYSNELAYTEQLYAN 269

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340
             VGL     +++++F  N     + L   F   + NP   +   I  +    +FF  + 
Sbjct: 270 --VGLTGE-VKKFIRFNFNVLADNLALPRPFGDEDINPI--VQNGIQARGTTHDFFSAKG 324

Query: 341 TEYQQGAE 348
           + Y +   
Sbjct: 325 SSYSKMTV 332


>gi|322500276|emb|CBZ35354.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 196

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 3/140 (2%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
            +  N +++ +         L P++Y   W KY    +  W   E+ + +D+  W +   
Sbjct: 60  AEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAT--- 116

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L D ER  IK  L FFA S+ +V  N+       +  PE R +   Q   E +HS T+  
Sbjct: 117 LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSV 176

Query: 134 IITSLGLDEGELFNMYREVP 153
           ++ +   D  E   +   + 
Sbjct: 177 LLDTYITDSEEKLRLLHAIQ 196


>gi|312869696|ref|ZP_07729843.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           oris PB013-T2-3]
 gi|311094745|gb|EFQ53042.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           oris PB013-T2-3]
          Length = 339

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 119/334 (35%), Gaps = 32/334 (9%)

Query: 31  VNQLLPLKYGWAWEK-----YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           +NQ   + +    +      +       W+ T +P+ +D+  W+    L +D +  +   
Sbjct: 9   LNQYKAINWNEISDMIDKATWEKLTEQFWLDTRIPVSNDMDDWR---NLDEDHQWTVGHV 65

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
            G     +++ +   + A+   +        L    F E+VH+ ++  I ++L   +   
Sbjct: 66  FGGLTLLDTVQSEAGLTALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQID 125

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E+FN       +  KA          +                    V  V  E   FY+
Sbjct: 126 EIFNWSDTEEYLQNKATKIANMYLNPAEDPLKKK-------------VANVFLETFLFYS 172

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF   L     N++  +AE  + I+RDES+H  +          E      ++ +     
Sbjct: 173 GFYTPLYYLGHNELNNVAEIIKLILRDESVHGTYIGYKFQVGLHERTEKQQQDMKDWLYN 232

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPF 320
            L+E    E  Y H    K  +G        ++++ AN+    +G +PLF       NP 
Sbjct: 233 FLYELYDNEEKYTHLLYDK--IGWT-DDVLTFIRYNANKALMNLGQDPLFPDTAADVNPV 289

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
             M+ +       +FF      Y+ G    +K D
Sbjct: 290 V-MNGISTSTSNHDFFSQVGNGYRLGEVEAMKDD 322


>gi|227529511|ref|ZP_03959560.1| ribonucleoside-diphosphate reductase [Lactobacillus vaginalis ATCC
           49540]
 gi|227350596|gb|EEJ40887.1| ribonucleoside-diphosphate reductase [Lactobacillus vaginalis ATCC
           49540]
          Length = 339

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 114/314 (36%), Gaps = 27/314 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L  D +  +    G     +++ +   + A+ 
Sbjct: 29  WEKLTEQFWLDTRIPVSNDLDDWRE---LDTDHQWTVGHVFGGLTLLDTVQSEAGLTALK 85

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           + +        L    F E+VH+ ++  I ++L   E   E+F+       +  KA    
Sbjct: 86  QDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPEEINEIFDWSDSEEYLQNKAVQIA 145

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              +                       V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 146 NIYRNPEEDPLKKK-------------VANVFLETFLFYSGFYTPLYYLGHNKLNNVAEI 192

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          +      ++ +      L+E    E  Y H    + 
Sbjct: 193 IKLILRDESVHGTYIGYKFQVGMHDRTEKQQQDMKDWMYNFLYELYDNEEKYTHLLYDQ- 251

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
            VG        ++++ AN+    +G +PLF  T    NP   M+ +       +FF    
Sbjct: 252 -VGWT-EDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MNGISTSTANHDFFSQVG 308

Query: 341 TEYQQGA--ELKWD 352
             Y+ GA   +  D
Sbjct: 309 NGYRLGAVEAMNDD 322


>gi|50365347|ref|YP_053772.1| ribonucleotide-diphosphate reductase subunit beta [Mesoplasma
           florum L1]
 gi|50363903|gb|AAT75888.1| ribonucleoside-diphosphate reductase beta chain [Mesoplasma florum
           L1]
          Length = 340

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 114/330 (34%), Gaps = 31/330 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W++   LT + + +I R     
Sbjct: 31  NWNVVNDEKDLEVWN---RITQNFWLPEKIPVSNDLTSWRT---LTPEWQELITRTFTGL 84

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A   +      +      AF  AVH+ ++  I ++L   E   E   
Sbjct: 85  TLLDTIQATVGDVAQVPNSLTDHEQVIYTNFAFMVAVHARSYGSIFSTLCSSEQIEEAHE 144

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 ++  +A   + Y                         V   +  G   Y GF  
Sbjct: 145 WVINTETLQERAKALIPYYVNDD---------------PLKSKVAAALMPGFLLYGGFYL 189

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      +   +       E ++    +L+E
Sbjct: 190 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPEKQAEMKEFVFKLLYE 249

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E       GL A    ++  + A +    +G +  F   E    P +   
Sbjct: 250 LIDLEKAYLKELYED--FGL-ADDAIRFSVYNAGKFLQNLGYDSPFTEEETRIEPEIFTQ 306

Query: 327 ID--LKKEKNFFETRVTEYQQGA--ELKWD 352
           +     +  +FF    + Y  G   E + D
Sbjct: 307 LSARADENHDFFSGNGSSYIMGVSEETEDD 336


>gi|326333061|ref|ZP_08199312.1| ribonucleoside-diphosphate reductase, beta subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325949135|gb|EGD41224.1| ribonucleoside-diphosphate reductase, beta subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 334

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 104/323 (32%), Gaps = 31/323 (9%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG-FFASSESL 95
             Y  A +      +  W   E+P+++D   +     +TD E+  +K  L  F      L
Sbjct: 20  FDYPMAEDLAKKQRSIFWTAEEIPVENDKQDF--LVNMTDAEQAAVKTTLKLFTIYELIL 77

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAF-EEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
                   ++     PE +      +F E  +H+  +  +  +L +D  E ++ Y+  P 
Sbjct: 78  GGEVWGDRLFHAFPRPEIQMMTNAFSFAELNMHAPFYAKLNKTLMIDTEEFYDSYKNDPV 137

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  +                        L      + + E    Y+ FA +      
Sbjct: 138 LAERIAFVWDAIADDD---------------LLYALSVFTLMENCVLYSNFAFLKHFQSG 182

Query: 215 NK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL--------WTKEFQQKSRTM 264
            K  +  +     +  RDE+LH   G  + N    E               +   + R +
Sbjct: 183 GKNLLQNVISGINFSARDENLHATGGAWLFNTTLDEYAATVPADKFEAERDDLFARVRGV 242

Query: 265 LHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PW 322
                  E          G   G+     E +++   +     + +EPLF    NP   W
Sbjct: 243 AEHLYAHEARIVEMLFAHGPITGIEQADLEAFVRSRIDMTLENMRMEPLFGVEPNPVAEW 302

Query: 323 MSEVIDLKKEKNFFETRVTEYQQ 345
               I+  +  +FF+    EY +
Sbjct: 303 FYAGINGTQFHDFFQVTGNEYNR 325


>gi|310722361|ref|YP_003969185.1| hypothetical protein phiAS4_ORF0167 [Aeromonas phage phiAS4]
 gi|306021204|gb|ADM79739.1| hypothetical protein phiAS4_ORF0167 [Aeromonas phage phiAS4]
          Length = 332

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 103/319 (32%), Gaps = 28/319 (8%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG-FFASSESL 95
           +KY    +      +  W   E  + +D    ++   LT  E   I   L  F      +
Sbjct: 19  IKYPEFAKLADEQMHAFWPWDEPVVDNDAQDLRT--KLTPGELNGITTVLKLFTIYERKV 76

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
             +     I R    PE  +     A  E   H+  +  +   L LD+   +  ++E   
Sbjct: 77  GEDYWSARIARTFGRPEINRMATLFAAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKESEE 136

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL--- 211
           ++ +  +  +   ++S P                 F  +   EG   Y+ FA +      
Sbjct: 137 LSRRIQFVGK---SVSDPDDA------------KSFAAFTFIEGAVLYSSFAFLKHFQAQ 181

Query: 212 -GRANKMVGIAEQYQYIMRDESLH----LNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
               + M  I       + DE  H          +  ++K +       + +     M +
Sbjct: 182 ECGKDLMRNICRGVDLSVADEHHHSIGGAMLFQTLCREMKEKYGEDVRAKLKNDIINMAY 241

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSE 325
           +    E         +   G+ A     +++   N     +G EP+F+   NP   W   
Sbjct: 242 QVFDHESGIIDLVFAEPIDGITADELRVFVKSRINLCLENLGYEPIFEIENNPIADWFYR 301

Query: 326 VIDLKKEKNFFETRVTEYQ 344
            I+ KK  +FF    +EY 
Sbjct: 302 TINAKKFHDFFTGSGSEYN 320


>gi|256848140|ref|ZP_05553584.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715200|gb|EEU30177.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 333

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 111/308 (36%), Gaps = 25/308 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    L  D +  +    G     ++L +   + A+ 
Sbjct: 23  WEKLTEQFWLDTRIPVSNDLDDWRE---LDTDHQWTVGHVFGGLTLLDTLQSQAGLTALK 79

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
             +        L    F E+VH+ ++  I ++L   +   E+F+       +  KA    
Sbjct: 80  EDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIREIFDWSDSEEYLQNKAVKIG 139

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                 S                    V  V  E   FY+GF   L     NK+  +AE 
Sbjct: 140 NIYLDESVDPLKKK-------------VANVFLETFLFYSGFYTPLYYLGHNKLNNVAEI 186

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          +      ++ +      L+E    E  Y H    + 
Sbjct: 187 IKLILRDESVHGTYIGYKFQVGMRQLTEKQQQDMKDWMYNFLYELYDNEGNYTHLLYDQ- 245

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
            +G        ++++ AN+    +G +PLF  T    NP   M+ +       +FF    
Sbjct: 246 -IGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MNGISTTTSNHDFFSQVG 302

Query: 341 TEYQQGAE 348
             Y+ GA 
Sbjct: 303 NGYRLGAV 310


>gi|116490256|ref|YP_809800.1| ribonucleotide-diphosphate reductase subunit beta [Oenococcus oeni
           PSU-1]
 gi|290889638|ref|ZP_06552728.1| hypothetical protein AWRIB429_0118 [Oenococcus oeni AWRIB429]
 gi|116090981|gb|ABJ56135.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Oenococcus oeni PSU-1]
 gi|290480836|gb|EFD89470.1| hypothetical protein AWRIB429_0118 [Oenococcus oeni AWRIB429]
          Length = 337

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 108/303 (35%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +D+  W+S   L   E  +     G     ++L + + + ++ 
Sbjct: 28  WEKLTEQFWLDTRIPISNDMKDWRS---LGPVEHKLYDHVFGGLTMLDTLQSQDGMASLL 84

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
                P  R  L    F E+VH+ ++  I  +L       E+F+   +   +  KAN   
Sbjct: 85  DAAVTPHERAVLNNIKFMESVHAKSYSSIFETLDTPAEIDEIFDWASKNEQLQYKANKIN 144

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                                      +  V  E   FY+GF   L     NKM  +AE 
Sbjct: 145 SVYHDPD---------------PLKRKIASVFLETFLFYSGFYTPLYFVGHNKMANVAEI 189

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E      K+    +  +L++    E  Y H+   + 
Sbjct: 190 IKLIIRDESVHGTYIGYKFQLAYKELTEQEQKDLNSWAYDLLYDLYDNEEKYTHQLYDEI 249

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRV 340
                      ++++  N+    +GLEP+F       NP   M+ +       +FF    
Sbjct: 250 DW---FDDVMIFLRYNGNKALMNLGLEPMFADGAEDVNPVV-MNGISTSTANHDFFSQVG 305

Query: 341 TEY 343
             Y
Sbjct: 306 NGY 308


>gi|225869986|ref|YP_002745933.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           equi subsp. equi 4047]
 gi|225699390|emb|CAW92836.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           equi subsp. equi 4047]
          Length = 337

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 113/331 (34%), Gaps = 32/331 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + NQL   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNQLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF  A+H+ ++  I ++L   +   E  +
Sbjct: 82  TLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHD 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y                         V   +  G   Y GF  
Sbjct: 142 WVVSTESLQERARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L++
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFVFDLLYQ 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 247 LIDLEKAYLRELYDGFDL---ADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQGA---ELKWD 352
           +     +  +FF    + Y  G     +  D
Sbjct: 304 LSARADENHDFFSGNGSSYVMGVTEETIDDD 334


>gi|225869037|ref|YP_002744985.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           equi subsp. zooepidemicus]
 gi|225702313|emb|CAX00111.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           equi subsp. zooepidemicus]
          Length = 337

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 111/322 (34%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + NQL   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNQLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF  A+H+ ++  I ++L   +   E  +
Sbjct: 82  TLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHD 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y                         V   +  G   Y GF  
Sbjct: 142 WVVSTESLQERARVLIPYYTGND---------------PLKSKVAAAMMPGFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L++
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFVFDLLYQ 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 247 LIDLEKAYLRELYDGFDL---ADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|320450283|ref|YP_004202379.1| ribonucleoside-diphosphate reductase subunit beta [Thermus
           scotoductus SA-01]
 gi|320150452|gb|ADW21830.1| ribonucleoside-diphosphate reductase, subunit beta [Thermus
           scotoductus SA-01]
          Length = 323

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/315 (16%), Positives = 117/315 (37%), Gaps = 18/315 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y        +  +++W+ TE     D+  +        + R +++R+L   +  E L
Sbjct: 11  PYEYPRLLAYRDAIRHSYWLHTEFSYAADVQDYALAG---PEVRSLVERSLLAISQVE-L 66

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
                    Y     PE  +  +  A  E  H++ + +++  L L++             
Sbjct: 67  SVKLFWARTYEVFPKPEVAEVGMTFAESEVRHANAYAHLLDLLALED--------RFAQA 118

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA- 214
             K     +  + L++   +    D        L +F    E    ++ F  +++L +  
Sbjct: 119 LEKETALRERHRHLTAVLGSAFRGDLRGH-ALALLLFSAFTEHASLFSQFYVLMALNKRL 177

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            +  GI+   +   ++E+LH  FG++++  ++ E P L+   F +++   +      E A
Sbjct: 178 GRFKGISNAIEATSKEENLHGLFGVELLRILREERPDLFGPSFTEEALDRVEAFFRTEEA 237

Query: 275 YAHETMPKGF-VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSEVIDLK 330
                  +G    +      +++++  N+     GL   F   +       W    +   
Sbjct: 238 LLEWIFARGDTEAVRGEEVLEFLKWRYNQVLALHGLPAPFPVRKECLRDTEWFDLELLAD 297

Query: 331 KEKNFFETRVTEYQQ 345
           KE +FF  R   Y +
Sbjct: 298 KEVDFFNKRSVAYAR 312


>gi|195977665|ref|YP_002122909.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195974370|gb|ACG61896.1| ribonucleotide reductase of class Ib (aerobic) beta subunit NrdF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 337

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 111/322 (34%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + NQL   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNQLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF  A+H+ ++  I ++L   +   E  +
Sbjct: 82  TLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHD 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y                         V   +  G   Y GF  
Sbjct: 142 WVVSTESLQERARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L++
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFVFDLLYQ 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 247 LIDLEKAYLRELYDGFDL---ADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|194172964|ref|YP_002003608.1| ribonucleoside diphosphate reductase beta chain [Escherichia phage
           rv5]
 gi|114796002|gb|ABI79176.1| ribonucleoside diphosphate reductase beta chain [Escherichia phage
           rv5]
          Length = 362

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 136/326 (41%), Gaps = 16/326 (4%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           KY   +E Y       W   EV +   ++ + + +  T D   ++ + L +   ++S+ A
Sbjct: 33  KYPQLFELYKKQKEQDWAEDEVDLSQSISDFVTCSKSTYD---VMVQTLMWQWEADSVAA 89

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            +I+      ++N E    L++Q+  E +H+ T+  I+     +  E+    +E  ++ +
Sbjct: 90  RSIICLFSPFITNSELFTLLMKQSEIEVLHALTYSEIVRQCLPNAREIIEEIQENQNVLS 149

Query: 158 KANWALQYTQTLS--SPSFTTGTKDADQEFLQDLF----VFYVVFEGMWFYTGFAQILSL 211
           ++   ++Y Q L      +        ++ ++          +  E + F   FA   ++
Sbjct: 150 RSGVIVKYMQELEVIGAKYRLDPSSVKEDIVRKCILRALFALLALESIEFIASFACTFAV 209

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW-TKEFQQKSRTMLHEATL 270
                 V +A+  Q IM DE LH      +I+ +  +        E + + + +L E   
Sbjct: 210 AEQGIFVQVAQLVQKIMLDEMLHSKGDFAIIDILLNDPAWEKSFLEIKGELKEILDEVRT 269

Query: 271 LEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVI 327
            E  ++     +G   +GLN+P  ++++ +  +      G++  F   T++P P+M   +
Sbjct: 270 KEYGWSDYIFSEGRAIIGLNSPLLKEWVDYNCSPIYDYYGIDKDFVPPTKDPLPFMQVWM 329

Query: 328 --DLKKEKNFFETRVTEYQQGAELKW 351
              L++  N  E   T+Y+    +  
Sbjct: 330 KPSLQQTAN-QEMSNTDYRVNTTVND 354


>gi|66391280|ref|YP_238601.1| ORF025 [Staphylococcus phage Twort]
 gi|62637210|gb|AAX92321.1| ORF025 [Staphylococcus phage Twort]
          Length = 349

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 119/316 (37%), Gaps = 22/316 (6%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
           A   +  A  + W+P +  +  D++ W   N LTD E+   K+ L      ++  +   +
Sbjct: 30  ANNFWELATTSFWLPEDFDISRDVSSW---NKLTDIEKDTYKKVLAGLTGLDTKQSVEGM 86

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAK 158
             I  H       Q      F E++H+ ++ +I T+L L++   +       + P +  K
Sbjct: 87  SLIAHHEPRTRFAQVYTAFDFYESIHAKSYSHIFTTLLLNKETNYLLNEWVEQEPHLKKK 146

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
           A +   + + L  P+ +T  +           V     E   FY+GF   L L     MV
Sbjct: 147 AQYIGYFYEKLEQPNPSTFDR-------YMAKVASAFLESALFYSGFYYPLLLSGQGVMV 199

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
                   I +DE+ H             E       +       +L      E++Y+H 
Sbjct: 200 QSGTTIYKITQDEAYHGVGVGYTAQLDYQELTEEEQSKADALMYELLEVLYENEVSYSHM 259

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK--EKNF 335
              K  +GL      +Y+Q+  NR    +G +  F     NP   ++   ++ K    +F
Sbjct: 260 LYDK--LGLT-EDVIRYVQYNFNRALANLGFDDYFNPEPFNPI--VNNQTNVDKLSNADF 314

Query: 336 FETRVTEYQQGAELKW 351
           F T+  +Y++    K 
Sbjct: 315 FSTKN-DYKRSMNTKD 329


>gi|227891214|ref|ZP_04009019.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           salivarius ATCC 11741]
 gi|227867088|gb|EEJ74509.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           salivarius ATCC 11741]
          Length = 326

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 117/304 (38%), Gaps = 28/304 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL+ W+      +D++ ++ +  G     ++L + + + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLSDWREF---NEDDKDIVGKVFGGLTLLDTLQSQDGMSSLK 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
           + +        +    F E+VH+ ++  I ++L   +   E+F+       +  KAN   
Sbjct: 79  KDVRTQHEEAVMNNIEFMESVHAKSYSSIFSTLNTPKEIEEIFDWTNSNEILQYKANRIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  Q  S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYQNGSPLQKKV---------------ASVFLETFLFYSGFYTPLYWLGHNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E      +EF      +L+E    E  Y H    K 
Sbjct: 184 IKLILRDESVHGTYIGYKFQLGFNELSDDEQEEFTSWMYDLLYELYENEEKYTHLLYDK- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPL----FKYTENPFPWMSEVIDLKKEKNFFETR 339
            VG        ++++ AN+    +G++PL    +    NP   M+ +       +FF   
Sbjct: 243 -VGWT-DDVLVFLRYNANKALMNLGMDPLFADGYAQNVNPVV-MNGISTSTSNHDFFSQV 299

Query: 340 VTEY 343
              Y
Sbjct: 300 GNGY 303


>gi|170017903|ref|YP_001728822.1| ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20]
 gi|169804760|gb|ACA83378.1| Ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20]
          Length = 324

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 114/303 (37%), Gaps = 26/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    ++D ER  +    G   + ++L + + + ++ 
Sbjct: 26  WEKLTQQFWLDTRIPISNDLRTWR--GNMSDQERQTLNLVFGGLTTLDTLQSQDGMASLK 83

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWAL 163
             + N +    L    F E+VH+ ++  I  +L        +F+       +  KAN   
Sbjct: 84  LDVVNQKEEAVLNNIQFMESVHAKSYSSIFETLNEKSEIEAIFDWADSNEFLQYKANRIN 143

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              QT +                       V  E   FY+GF   L     NKM+ +AE 
Sbjct: 144 DIYQTGTPLEKKI---------------ASVFLETFLFYSGFYTPLYFLGHNKMLNVAEI 188

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          + P   +   Q     +L+E    E  Y HE     
Sbjct: 189 IKLIIRDESVHGTYIGYKFQIGFNKLPESESTALQSWMYDLLYELYENEEKYTHELYDD- 247

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            +G        ++++ AN+    +G EP+F       NP   M+ +       +FF    
Sbjct: 248 -LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGISTSTANHDFFSGVG 304

Query: 341 TEY 343
             Y
Sbjct: 305 NGY 307


>gi|57014145|gb|AAT68710.2| ribonucleoside reductase beta subunit [Borrelia hermsii]
          Length = 321

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/330 (19%), Positives = 125/330 (37%), Gaps = 26/330 (7%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
               + N+L    Y      +       W+  E+P+ DD  +W +   L  +ER + ++ 
Sbjct: 5   REAINWNRLNN-SYTKM--FWDQNIRQFWVDEEIPISDDKLVWNT---LDGEERDVYEKV 58

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEG 143
           LG     ++   +  +  I   + N + +  L      E +H+ ++  I +SL       
Sbjct: 59  LGGLTLLDTEQGSVGMPRIALAIDNLDYKPVLGFMGAMEHMHAKSYSSIFSSLSNIDRID 118

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F   +   +   K +  L    ++            D+  L       V  E   FY+
Sbjct: 119 HIFGWVKTYRNFQDKLDLILGKYNSI-----------HDRMSLYKALCTSVFLETFLFYS 167

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF   L L    KMV   E    I+RDES+H  F   +  +   +         Q+++  
Sbjct: 168 GFFYPLYLAGQGKMVNSGEIINLILRDESVHGVFVGLLAQEEFNKMTFKEQAFAQREATL 227

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPF 320
           +L     LE AY  +      +GL     + ++++ A++    +G +  F       NP 
Sbjct: 228 ILERLYYLESAYTKDLY--SSIGLEGA-VDVFVRYNADKALMNLGFDSAFNIRDIDVNPL 284

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             ++ +    K  +FF T+   Y +  +++
Sbjct: 285 V-LNGLRTNTKTHDFFSTKGNGYIKPMKVE 313


>gi|90962208|ref|YP_536124.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           salivarius UCC118]
 gi|301300452|ref|ZP_07206652.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90821402|gb|ABE00041.1| Ribonucleoside-diphosphate reductase beta chain [Lactobacillus
           salivarius UCC118]
 gi|300214875|gb|ADJ79291.1| Ribonucleoside-diphosphate reductase beta chain [Lactobacillus
           salivarius CECT 5713]
 gi|300851949|gb|EFK79633.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 326

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 117/304 (38%), Gaps = 28/304 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL+ W+      +D++ ++ +  G     ++L + + + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLSDWREF---NEDDKDVVGKVFGGLTLLDTLQSQDGMSSLK 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
           + +        +    F E+VH+ ++  I ++L   +   E+F+       +  KAN   
Sbjct: 79  KDVRTQHEEAVMNNIEFMESVHAKSYSSIFSTLNTPKEIEEIFDWTNSNEILQYKANRIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  Q  S                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYQNGSPLQKKV---------------ASVFLETFLFYSGFYTPLYWLGHNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E      +EF      +L+E    E  Y H    K 
Sbjct: 184 IKLILRDESVHGTYIGYKFQLGFNELSDDEQEEFTSWMYDLLYELYENEEKYTHLLYDK- 242

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPL----FKYTENPFPWMSEVIDLKKEKNFFETR 339
            VG        ++++ AN+    +G++PL    +    NP   M+ +       +FF   
Sbjct: 243 -VGWT-DDVLVFLRYNANKALMNLGMDPLFADGYAQNVNPVV-MNGISTSTSNHDFFSQV 299

Query: 340 VTEY 343
              Y
Sbjct: 300 GNGY 303


>gi|260578497|ref|ZP_05846410.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603378|gb|EEW16642.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
           [Corynebacterium jeikeium ATCC 43734]
          Length = 338

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/338 (16%), Positives = 122/338 (36%), Gaps = 42/338 (12%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+      +N W+P +VP+ +DL  W   N LTD ER +  +     
Sbjct: 25  NWNRLDDQKDLEIWQ---RLTSNFWLPEKVPLSNDLPTW---NALTDAERELTTKVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    ++          +      AF +AVH+ ++  + +++   E     + 
Sbjct: 79  TLLDTVQATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSEEINAAYT 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P++  +A   +Q+                         V   +   +  Y GF  
Sbjct: 139 WAIGNPALQRRATAVMQHYYGDD---------------PLKRKVAATLLSSLLLYAGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       ++  A+  + I+RD+++H  +      +    +P   + E ++ +  ++ E
Sbjct: 184 PLWFSCRGTLMNTADMIRLILRDKAVHGYYSGYKFQRGLEAHPE-RSAELEEFTFALVEE 242

Query: 268 ATLLEIAYAHETMPKGFVGLNA--PSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPW 322
              LE  Y+ +          +       ++ + A++    +G  P ++       P   
Sbjct: 243 LLELEKEYSGDLYGGTLPDEKSLIDGVMAFVHYNADKALMNLGYPPQYEEEAAKTEP--- 299

Query: 323 MSEVI-----DLKKEKNFFETRVTEYQQG---AELKWD 352
             E+I     D  +  +FF    + Y  G   +  + D
Sbjct: 300 --EIIAALAPDSNETHDFFSGSGSSYVIGRAESTEEDD 335


>gi|83319806|ref|YP_424093.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|83283692|gb|ABC01624.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 339

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 121/352 (34%), Gaps = 34/352 (9%)

Query: 4   NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
              +SPI+  +     + + +     + N +   K    W        N W+P ++P+ +
Sbjct: 9   QESVSPIEFVKNDFKGNLRSV-----NWNVINDEKDLEVWN---RITQNFWLPEKIPVSN 60

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           DL  W+S   L+ + + ++ R        +++ A    +A   H      +      AF 
Sbjct: 61  DLPSWRS---LSAEWQQLVTRTFTGLTLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFM 117

Query: 124 EAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
             VH+ ++  I ++L   E   E      +  S+  +A   + Y                
Sbjct: 118 VGVHARSYGTIFSTLCSSEQIEEAHEWVVKTESLQKRAKALIPYYAGTD----------- 166

Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
                    V   +  G   Y GF     L    K+   ++  + I+RD+ +H  +    
Sbjct: 167 ----PLKSKVAAALMPGFLLYGGFYLPFYLSSRAKLPNTSDIVRLILRDKVIHNYYSGYK 222

Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
             +   +       E ++    +L+E   LE AY  E      +   A    ++  + A 
Sbjct: 223 YQKKVAKLSVEKQAEMKEFVFKLLYELIDLETAYLKELYAGFDI---ADDAIRFSVYNAG 279

Query: 302 RRCHQIGLEPLFKYTENPF-PWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
           +    +G +  F   E    P +   +     +  +FF    + Y  G  ++
Sbjct: 280 KFLQNLGYDSPFSEEETRIEPEIFNQLSARADENHDFFSGNGSSYVMGVSVE 331


>gi|118586508|ref|ZP_01543952.1| ribonucleoside-diphosphate reductase 2, beta subunit [Oenococcus
           oeni ATCC BAA-1163]
 gi|118433072|gb|EAV39794.1| ribonucleoside-diphosphate reductase 2, beta subunit [Oenococcus
           oeni ATCC BAA-1163]
          Length = 337

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 108/303 (35%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +D+  W+S   L   E  +     G     ++L + + + ++ 
Sbjct: 28  WEKLTEQFWLDTRIPISNDMKDWRS---LGLVEHKLYDHVFGGLTMLDTLQSQDGMASLL 84

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
                P  R  L    F E+VH+ ++  I  +L       E+F+   +   +  KAN   
Sbjct: 85  DAAVTPHERAVLNNIKFMESVHAKSYSSIFETLDTPAEIDEIFDWASKNEQLQYKANKIN 144

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                                      +  V  E   FY+GF   L     NKM  +AE 
Sbjct: 145 SVYHDPD---------------PLKRKIASVFLETFLFYSGFYTPLYFVGHNKMANVAEI 189

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E      KE    +  +L++    E  Y H+   + 
Sbjct: 190 IKLIIRDESVHGTYIGYKFQLAYKELTEQEQKELNSWAYDLLYDLYDNEEKYTHQLYDEI 249

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRV 340
                      ++++  N+    +GLEP+F       NP   M+ +       +FF    
Sbjct: 250 DW---FDDVMIFLRYNGNKALMNLGLEPMFADGAEDVNPVV-MNGISTSTANHDFFSQVG 305

Query: 341 TEY 343
             Y
Sbjct: 306 NGY 308


>gi|296082342|emb|CBI21347.3| unnamed protein product [Vitis vinifera]
          Length = 227

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P++Y   WE Y  A  + W   EV +  D   W+    LT DE+ 
Sbjct: 6   EEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWE---NLTSDEKH 62

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
            I   L FFA+S+ +V  N+     + +   E R +   Q   E +HS     
Sbjct: 63  FISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEILLR 115



 Score =  116 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 81/191 (42%), Gaps = 3/191 (1%)

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            +   +     + +     ++ D    Q  +      E  +     A   +         
Sbjct: 23  QYPEVWEMYKKAEASFWTAEEVDLSQDQRQWENLTSDEKHFISHILAFFAASDGIVL-EN 81

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           +A ++   ++       +G  +  +       L  K  +++ + ++ ++  +E  +  + 
Sbjct: 82  LAGRFMKEVQVAEARAFYGFQIAIENIHSEILLRNKLSEERVKAIVADSVDIEREFVCDA 141

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +P   VG+N+    QY++F+A+R    +G   ++  + NPF WM E+I L+ + NFFE R
Sbjct: 142 LPCALVGMNSALMSQYIEFVADRLLGALGYGKMYNVS-NPFDWM-ELISLQGKTNFFEKR 199

Query: 340 VTEYQQGAELK 350
           V EYQ+ + + 
Sbjct: 200 VGEYQKASVMS 210


>gi|162448128|ref|YP_001621260.1| ribonucleoside-diphosphate reductase subunit beta [Acholeplasma
           laidlawii PG-8A]
 gi|161986235|gb|ABX81884.1| ribonucleoside-diphosphate reductase, beta chain [Acholeplasma
           laidlawii PG-8A]
          Length = 369

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 120/317 (37%), Gaps = 23/317 (7%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
             Y    +  W P +V +Q DL +W   + L ++ +    +NL      ++   +  +  
Sbjct: 36  HFYEQNLSQFWRPEDVSLQPDLNVW---SVLPENIQDAYAKNLLVLTFLDTHQGDIGMPV 92

Query: 104 IYRHLSNP--ECRQYLLRQ-AFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAK 158
           + R L +   + +  L    A E AVH+ ++  I  +   ++   ELF+   +  ++   
Sbjct: 93  VSRSLDDHFHQRKAVLNFMGAMENAVHAKSYSNIFMTYMSNQKIDELFHWGEKHTNLQNI 152

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEF--------LQDLFVFYVVFEGMWFYTGFAQILS 210
            +  + Y + L   ++    +  D  +             V  V  E   FY+GF   L 
Sbjct: 153 MSLIVGYYKELDRYNYLKQFESNDPGYSETDFNIAQFKAMVASVYLETWLFYSGFYYPLF 212

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                K++   E    I+RDES+H  +   +  ++     +   ++  Q     L E   
Sbjct: 213 FYGQGKLMQAGEIINLILRDESIHGLYVGRLAQEVFETFSNELQEQLTQWVHDFLLELYH 272

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDL 329
            +            +   +   + ++++ AN+    +G +P F     NP   +   ++ 
Sbjct: 273 EQNELVESIYDAVEL---SHDVKIFVRYNANKALMNLGFDPYFEPEDVNPV--VLNGLNT 327

Query: 330 KKEK-NFFETRVTEYQQ 345
           + +  + F  +   YQ+
Sbjct: 328 ETKTMDNFSMKGNGYQK 344


>gi|119360103|gb|ABL66780.1| At5g40942 [Arabidopsis thaliana]
          Length = 231

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 2/113 (1%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +L    D   + P++Y   WE Y  A  + W   EV +  D   W+  N LT+DER 
Sbjct: 6   EEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTNDERH 63

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
            IK  L FFA+S+ +V  N+       +   E R +   Q   E +HS     
Sbjct: 64  FIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEILLR 116



 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 79/191 (41%), Gaps = 2/191 (1%)

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
            +   +     + +     ++ D       +   +  +   F        +      +  
Sbjct: 23  QYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLTNDERHFIKHVLAFFAASDGIVLEN 82

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           ++ ++   ++       +G  +  +       L TK  + + + ++ +A  +E  +  + 
Sbjct: 83  LSTRFMSDVQISEARAFYGFQIAIENIHSEILLRTKFDEDRLKAIVCDAVEIEREFVCDA 142

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           +    VG+N     QY++F+A+R    +G   ++  T NPF WM E+I L+ + NFFE R
Sbjct: 143 LSCALVGMNRELMSQYIEFVADRLLAALGCGKVYGVT-NPFDWM-ELISLQGKTNFFEKR 200

Query: 340 VTEYQQGAELK 350
           V EYQ+ + + 
Sbjct: 201 VGEYQKASVMS 211


>gi|68535290|ref|YP_249995.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           jeikeium K411]
 gi|68262889|emb|CAI36377.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           jeikeium K411]
          Length = 338

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 124/338 (36%), Gaps = 42/338 (12%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W+      +N W+P +VP+ +DL  W   N LTD ER +  +     
Sbjct: 25  NWNRLDDQKDLEIWQ---RLTSNFWLPEKVPLSNDLPTW---NALTDAERELTTKVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    ++          +      AF +AVH+ ++  + +++   E     + 
Sbjct: 79  TLLDTVQATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSEEINAAYT 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                P++  +A   +Q+                         V   +   +  Y GF  
Sbjct: 139 WAIGNPALQRRATAVMQHYYGDD---------------PLKRKVAATLLSSLLLYAGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       ++  A+  + I+RD+++H  +      +    +P   + E ++ + T++ E
Sbjct: 184 PLWFSCRGTLMNTADMIRLILRDKAVHGYYSGYKFQRGLEAHPE-RSAELEEFTFTLVEE 242

Query: 268 ATLLEIAYAHETMPKGFVGLNA--PSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPW 322
              LE  Y+ +   +      +       ++ + A++    +G  P ++       P   
Sbjct: 243 LLELEKEYSGDLYGETLPDEKSLIDGVMAFVHYNADKALMNLGYPPQYEEEAAKTEP--- 299

Query: 323 MSEVI-----DLKKEKNFFETRVTEYQQG---AELKWD 352
             E+I     D  +  +FF    + Y  G   +  + D
Sbjct: 300 --EIIAALAPDSNETHDFFSGSGSSYVIGRAESTEEDD 335


>gi|255325476|ref|ZP_05366578.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255297414|gb|EET76729.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 362

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/338 (17%), Positives = 118/338 (34%), Gaps = 44/338 (13%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +DL  W+    +T +ER +  R     
Sbjct: 53  NWNRVSDDKDLEVWN---RLTANFWLPEKVPLSNDLPAWQ---KMTPEERNLTMRVFTGL 106

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
            + +++ A    +   +              AF ++VH+ ++  + ++L   +   E + 
Sbjct: 107 TTLDTVQATVGEICQIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLSSTKEIDEAYR 166

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  + A+A   L +            +                       Y GF  
Sbjct: 167 WAVNNDLLQARAKKVLAHYFGPDPLKRKVSSTLLSSL---------------LLYAGFYL 211

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       +   A+  + I+RD+++H  +      +       L  KE    + ++L E
Sbjct: 212 PLHFSVHATLTNTADMIRLILRDKAVHGYYSGYKYQRGLESTTPLRQKEMHDFTISLLEE 271

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE+ Y+ E      +GL       ++++ AN+    +G    F   E   NP     
Sbjct: 272 LYALELDYSGELYE--PLGL-MDDVAVFVRYNANKALMNLGYPDYFPPEETEVNP----- 323

Query: 325 EVI-----DLKKEKNFFETRVTEYQQG-----AELKWD 352
           E++        +  +FF    + Y  G     ++  WD
Sbjct: 324 EILAALAPGADENHDFFSGSGSSYVIGTAEETSDDDWD 361


>gi|312865304|ref|ZP_07725532.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
 gi|311099415|gb|EFQ57631.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
          Length = 316

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/307 (22%), Positives = 122/307 (39%), Gaps = 28/307 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A    W+ T VP+ +DL  WK    L+D E+ ++K+ +G  A  ++L +   + AI 
Sbjct: 20  WDKATAQFWLDTRVPVSNDLLDWKQ---LSDLEKTVVKKAVGGLALLDTLQSEEGLYAIK 76

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWAL 163
           ++    +         F E++H+ T+  I+ SL   +    +++     P +  KA    
Sbjct: 77  KNARTQKELAVFSDFNFMESIHAKTYGTILISLNTFKDIEAIYDWMDNDPRMQFKAQRVN 136

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
            Y Q  S                  + V  +  EG+ +Y+ F   L     NK+  +AE 
Sbjct: 137 DYYQNGS---------------PLQVMVASIFLEGILYYSNFFIPLWYRGQNKLANLAEL 181

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + ++RDES+H  +      Q   E       +FQ+     L E    E AY  E     
Sbjct: 182 IKLVIRDESVHGTYLGYKFRQGFDELSPEDQADFQKWMYGFLDELLENEFAYTEEVYSD- 240

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFETR 339
            +GL     + ++++ AN+    +G    F+       NP   M+ +       +FF   
Sbjct: 241 -IGL-EDDIKTFVKYNANKSLQNMGFGIYFENATANDVNPIV-MNGISIETANHDFFSQV 297

Query: 340 VTEYQQG 346
              Y  G
Sbjct: 298 GAGYLMG 304


>gi|301066519|ref|YP_003788542.1| ribonucleotide reductase subunit beta [Lactobacillus casei str.
           Zhang]
 gi|300438926|gb|ADK18692.1| Ribonucleotide reductase, beta subunit [Lactobacillus casei str.
           Zhang]
          Length = 326

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 112/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+S   L  DE+ ++    G     ++L + + + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGLTLLDTLQSQDGMASLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           +++   +    L    F E+VH+ ++  I ++L       E+F+       +  KAN   
Sbjct: 79  QNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKANKIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                 S+                      V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 DIYHNGSALQKKI---------------ASVFLETFLFYSGFFTPLYYLGNNKLTNVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    +  +     +L +    E  Y ++   K 
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEAEQQTLKDWMYDLLFDLYENEEKYTNDLYAKT 243

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
                      ++++ AN+    +G E  F  T    NP   M+ +       +FF    
Sbjct: 244 NW---TDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MNGISTSTANHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|85726187|gb|ABC79616.1| ribonucleotide reductase beta subunit [Borrelia hermsii DAH]
          Length = 321

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 63/325 (19%), Positives = 122/325 (37%), Gaps = 26/325 (8%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
               + N+L    Y      +       W+  E+P+ DD  +W +   L  +ER + ++ 
Sbjct: 5   REAINWNRLNN-SYTKM--FWDQNIRQFWVDEEIPISDDKLVWNT---LDGEERDVYEKV 58

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEG 143
           LG     ++   +  +  +   + N + +  L      E +H+ ++  I +SL       
Sbjct: 59  LGGLTLLDTEQGSVGMPRLALAIDNLDYKPVLGFMGAMEHMHAKSYSSIFSSLSNIDRID 118

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F   +   +   K +  L    ++            D+  L       V  E   FY+
Sbjct: 119 HIFGWVKTYRNFQDKLDLILGKYNSI-----------HDRMSLYKALCTSVFLETFLFYS 167

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF   L L    KMV   E    I+RDES+H  F   +  +   +         Q+++  
Sbjct: 168 GFFYPLYLAGQGKMVNSGEIINLILRDESVHGVFVGLLAQEEFNKMTFKEQAFAQREATL 227

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPF 320
           +L     LE AY  +      +GL     + ++++ A++    +G +  F       NP 
Sbjct: 228 ILERLYYLESAYTKDLY--SSIGLEGA-VDVFVRYNADKALMNLGFDSAFNIRDIDVNPL 284

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQ 345
             ++ +    K  +FF T+   Y +
Sbjct: 285 V-LNGLRTNTKTHDFFSTKGNGYIK 308


>gi|295398337|ref|ZP_06808379.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
 gi|294973476|gb|EFG49261.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
          Length = 317

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 123/311 (39%), Gaps = 28/311 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A    W+ T VP+ +DL  WK    L+  E+ ++K+ +G  A  ++L +   + A+ 
Sbjct: 20  WDKATAQFWLDTRVPVSNDLLEWK---KLSTMEKEIVKKAVGGLALLDTLQSEEGLYALK 76

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
           +H    + R  L    F E++H+ T+  I+ SL   +   E+++     P +  KA    
Sbjct: 77  KHARTQKERAVLSNFMFMESIHAKTYGTILISLNTFKDIEEIYDWMNNDPMMQFKAEKIN 136

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              Q  +                       V  EG+ +Y+ F   L     NK+  +AE 
Sbjct: 137 NIYQNGTPIQVKV---------------ASVFLEGILYYSNFFIPLWYRGQNKLANLAEL 181

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + ++RDES+H  +      Q   E      + F Q   + L E    E A+  E     
Sbjct: 182 IKLVIRDESVHGTYLGYKFRQDFEELTQDEQEAFTQWMYSFLEELLEKEFAFTEELY--T 239

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNFFETR 339
            +GL A   + ++++ AN+    +G    F+       NP   M+ +       +FF   
Sbjct: 240 EIGL-AEDIKTFVKYNANKSLQNMGFGIYFENALAKDVNPIV-MNGISIETSNHDFFSQV 297

Query: 340 VTEYQQGAELK 350
              Y  G   +
Sbjct: 298 GAGYLMGNAEE 308


>gi|313665031|ref|YP_004046902.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           leachii PG50]
 gi|312949985|gb|ADR24581.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           leachii PG50]
          Length = 339

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 111/326 (34%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W+S   L+ + + ++ R     
Sbjct: 30  NWNVINDEKDLEVWN---RITQNFWLPEKIPVSNDLPSWRS---LSAEWQQLVTRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A   H      +      AF   VH+ ++  I ++L   E   E   
Sbjct: 84  TLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +  S+  +A   + Y                         V   +  G   Y GF  
Sbjct: 144 WVVKTESLQKRAKALIPYYAGTD---------------PLKSKVAAALMPGFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      +   +       E ++    +L+E
Sbjct: 189 PFYLSSRAKLPNTSDIVRLILRDKVIHNYYSGYKYQKKVAKLSVEKQAEMKEFVFKLLYE 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE  Y  E      +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 249 LIDLETDYLKELYAGFDI---ADDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 305

Query: 327 ID--LKKEKNFFETRVTEYQQGAELK 350
           +     +  +FF    + Y  G  ++
Sbjct: 306 LSARADENHDFFSGNGSSYVMGVSVE 331


>gi|294155961|ref|YP_003560345.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           crocodyli MP145]
 gi|291600208|gb|ADE19704.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           crocodyli MP145]
          Length = 340

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 109/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +D+  W++   L+D+ + +I R     
Sbjct: 31  NWNIINDDKDLEVWN---RVTQNFWLPEKIPVSNDIPSWRT---LSDEWQTLITRTFTGL 84

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A   +      +      AF  AVH+ ++  I ++L   +   E   
Sbjct: 85  TMLDTIQATVCDIAQIPNALTDHEQVIYANFAFMVAVHARSYGTIFSTLCSSDQIEEAHE 144

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   + Y                  E      V   +  G   Y GF  
Sbjct: 145 WVIANEELQERARILIPYYH---------------CEDPLKSKVAAALMPGFLLYGGFYL 189

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   +K+   ++  + I+RD+ +H  +      +   +       E ++    +L+ 
Sbjct: 190 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSDKRKAELKEFVFELLYR 249

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
               E  +  +      +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 250 LIDAEKKFLTKLYEGFDL---AEDAIRFSVYNAGKFLQNLGYDSPFTDEETRIEPEIFAQ 306

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 307 LSARADENHDFFSGNGSSYVMG 328


>gi|260904664|ref|ZP_05912986.1| ribonucleoside-diphosphate reductase beta chain [Brevibacterium
           linens BL2]
          Length = 341

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 112/324 (34%), Gaps = 41/324 (12%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +     N W+P +VP+ +D+  W+    LT  ER +  R        +++ A    + 
Sbjct: 43  EVWNRLTANFWLPEKVPLSNDIPAWQ---RLTQVERTLTMRVFTGLTMLDTVQATVGEIC 99

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANW 161
             +              AF ++VH+ ++  + ++L    +  + +        +  +   
Sbjct: 100 QIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLSTTVEIDDAYRWAVGNDLLQQRCKK 159

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            LQ+            +                       Y GF   L       +   A
Sbjct: 160 VLQHYYGDDPLKRKVSSTLLSSL---------------LLYAGFYLPLHFSVHATLTNTA 204

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RD+++H  +      +          +E ++ +  +L +   LE+AY+ E   
Sbjct: 205 DMIRLILRDKAVHGYYSGYKYQRGIENQTSARQEEMREFTYELLEDLYELELAYSGELYE 264

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI-----DLKKEK 333
              +GL       ++++ AN+    +G    F   E   NP     E++        +  
Sbjct: 265 --PLGL-MDDVAVFVRYNANKALMNLGYPARFNSDETQVNP-----EILAALAPGADENH 316

Query: 334 NFFETRVTEYQQG-----AELKWD 352
           +FF    + Y  G     ++  WD
Sbjct: 317 DFFSGSGSSYVIGKGEDTSDDDWD 340


>gi|116494955|ref|YP_806689.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           casei ATCC 334]
 gi|191638466|ref|YP_001987632.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           casei BL23]
 gi|227535043|ref|ZP_03965092.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239631445|ref|ZP_04674476.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|116105105|gb|ABJ70247.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Lactobacillus casei ATCC 334]
 gi|190712768|emb|CAQ66774.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus
           casei BL23]
 gi|227187358|gb|EEI67425.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|239525910|gb|EEQ64911.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|327382498|gb|AEA53974.1| hypothetical protein LC2W_1641 [Lactobacillus casei LC2W]
 gi|327385696|gb|AEA57170.1| hypothetical protein LCBD_1674 [Lactobacillus casei BD-II]
          Length = 326

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 112/303 (36%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+S   L  DE+ ++    G     ++L + + + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGLTLLDTLQSQDGMASLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
           +++   +    L    F E+VH+ ++  I ++L       E+F+       +  KAN   
Sbjct: 79  QNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKANKIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                 S+                      V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 DIYHNGSALQKKI---------------ASVFLETFLFYSGFFTPLYYLGNNKLTNVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          E P    +  +     +L +    E  Y ++   K 
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEAEQQTLKDWMYDLLFDLYENEEKYTNDLYAKT 243

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
                      ++++ AN+    +G E  F  T    NP   M+ +       +FF    
Sbjct: 244 NW---TDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MNGISTSTANHDFFSQVG 299

Query: 341 TEY 343
             Y
Sbjct: 300 NGY 302


>gi|46255232|ref|YP_006144.1| ribonucleoside-diphosphate reductase beta chain [Thermus
           thermophilus HB27]
 gi|46198081|gb|AAS82491.1| ribonucleoside-diphosphate reductase beta chain [Thermus
           thermophilus HB27]
          Length = 324

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 118/320 (36%), Gaps = 18/320 (5%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
                P +Y        +  +++W+ TE   Q DL          + ER +++R L   A
Sbjct: 7   RLAYRPYEYPELLRFRDAIRHSYWVHTEFSFQSDLQD---HALADEKERSLVERALLAIA 63

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E L        +Y     PE  +  L  A  E  H++ + +      L   E F    
Sbjct: 64  QVE-LAVKLFWARVYDRFPKPEIAEVGLTFAESEVRHANAYAH--LLELLGLEEAFGQAL 120

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           E  S       AL         +         +E+   LF+F    E +  ++ F  +++
Sbjct: 121 EGASALRDRAQAL-------GEALRRAQGKDLREYALALFLFSAFTEHVSLFSQFYVLMA 173

Query: 211 LGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
           L R   +  GI+   +   ++E++H  FG++++  ++ E+P    + FQ+++  +     
Sbjct: 174 LNRRGNRYKGISNAIEATSKEENVHGLFGVELLRLLRTEHPEALGEGFQEEALRLAQGLF 233

Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
             E A        G   L       ++++   N+     GL P F   E       W + 
Sbjct: 234 RAEEALLDWLFSAGEPALVGHRETLEFLKGRYNQVLALHGLPPPFPVDEKALRDTEWFTL 293

Query: 326 VIDLKKEKNFFETRVTEYQQ 345
            +   KE +FF  R   Y +
Sbjct: 294 ELLADKEVDFFNKRSVAYAR 313


>gi|171779436|ref|ZP_02920400.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282053|gb|EDT47484.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 316

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 127/316 (40%), Gaps = 31/316 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A    W+ T VP+ +DL  W+    L+D E+ ++K+ +G  A  ++L +   + A+ 
Sbjct: 20  WDKATAQFWLDTRVPVSNDLLDWR---KLSDMEKEVVKKAVGGLALLDTLQSEEGLYALK 76

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
           ++    + R  L    F E++H+ T+  I+ SL   +   E++N       +  KA    
Sbjct: 77  KNARTLKERAVLSDFTFMESIHAKTYGTILISLNTFKDIEEIYNWMNNDRRMQFKARKIN 136

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  Q  +                  + V  V  EG+ +Y+ F   L     NK+  +AE 
Sbjct: 137 EIYQNGT---------------PMQVKVASVFLEGILYYSNFFIPLWYRGQNKLANLAEL 181

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + ++RDES+H  +      Q   E      + F     + L E    E AY  E   + 
Sbjct: 182 IKLVIRDESVHGTYLGYKFRQDFNELAITEQENFTNWMYSFLEELLDNEFAYTEEVYSE- 240

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK----YTENPFPWMSEVIDLKKEKNFFETR 339
            +GL     + ++++ AN+    +G +  FK       NP   M+ +       +FF   
Sbjct: 241 -IGL-VEDIKTFVKYNANKSLQNMGFDIYFKDASANDVNPIV-MNGISIETANHDFFSQV 297

Query: 340 VTEYQQGAE---LKWD 352
              Y  G     L  D
Sbjct: 298 GAGYLMGEAEEMLDDD 313


>gi|260102934|ref|ZP_05753171.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus
           DSM 20075]
 gi|111610216|gb|ABH11600.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
           helveticus CNRZ32]
 gi|260083260|gb|EEW67380.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus
           DSM 20075]
          Length = 340

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 110/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 24  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
                  ++  A+   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 81  FTGLTLLDTTQASVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y                         V   +  G   Y 
Sbjct: 141 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 185

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 245

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE      +         +  + A +    +G +  F   E   +P 
Sbjct: 246 FLDKLIDLEKKYLHELYGDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 302

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339


>gi|328464295|gb|EGF35725.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           helveticus MTCC 5463]
          Length = 335

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 110/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 19  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
                  ++  A+   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 76  FTGLTLLDTTQASVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y                         V   +  G   Y 
Sbjct: 136 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 180

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE      +         +  + A +    +G +  F   E   +P 
Sbjct: 241 FLDKLIDLEKKYLHELYGDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334


>gi|313892092|ref|ZP_07825688.1| ribonucleoside-diphosphate reductase, beta subunit [Dialister
           microaerophilus UPII 345-E]
 gi|329121529|ref|ZP_08250153.1| ribonucleotide-diphosphate reductase subunit beta [Dialister
           micraerophilus DSM 19965]
 gi|313119484|gb|EFR42680.1| ribonucleoside-diphosphate reductase, beta subunit [Dialister
           microaerophilus UPII 345-E]
 gi|327469444|gb|EGF14914.1| ribonucleotide-diphosphate reductase subunit beta [Dialister
           micraerophilus DSM 19965]
          Length = 338

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 120/358 (33%), Gaps = 39/358 (10%)

Query: 5   TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
              SP++    +   + + +     + N +   K    W        N W+P  +PM +D
Sbjct: 9   KSQSPVEYAYAKDKKNMRSI-----NWNVMNDDKDLEVWN---RVTQNFWLPENIPMSND 60

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
           +  W +   L+DD + ++ R        +++ A+   +A  ++      +      AF  
Sbjct: 61  IPSWNT---LSDDWKQLVTRTFTGLTLLDTVQASIGDIAQIKNSVTDHEQVIYANFAFMV 117

Query: 125 AVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
            VH+ ++  I ++L   E   E         ++ A+A   + Y                 
Sbjct: 118 GVHARSYGTIFSTLCSSEQIEEAHEWVVNNDALQARAKLLIPYYTGDD------------ 165

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
                   V   +  G   Y GF     L    K+   ++  + I+RD+ +H  +     
Sbjct: 166 ---PLRSKVAAALMPGFLLYGGFYLPFYLASRAKLPNTSDMIRLILRDKVIHNYYSGYKY 222

Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
            Q   +       E ++    ++ E   LE  Y  +      +   A    ++  + A +
Sbjct: 223 QQKIAKENDARKAEMKKFVFDLMEEEIELEKIYLRDLYKGFDI---ADDAIRFSVYNAGK 279

Query: 303 RCHQIGLEPLFKYTENPF-PWMSEVID--LKKEKNFFETRVTEYQQGAELK-----WD 352
               +G +  F   E    P +   +     +  +FF    + Y  G   +     WD
Sbjct: 280 FLQNLGYDSPFSEEETHIAPEVFAQLSARADENHDFFSGSGSSYVIGTTEETTDEDWD 337


>gi|293363858|ref|ZP_06610594.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           alligatoris A21JP2]
 gi|292552348|gb|EFF41122.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           alligatoris A21JP2]
          Length = 340

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 108/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +D+  W++   L+D+ + +I R     
Sbjct: 31  NWNIIDDDKDLEVWN---RITQNFWLPEKIPVSNDIPSWRT---LSDEWQTLITRTFTGL 84

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A   +      +      AF  AVH+ ++  I ++L   E   E   
Sbjct: 85  TMLDTIQATVCDIAQIPNSLTDHEQVIYANFAFMVAVHARSYGTIFSTLCSSEQIEEAHE 144

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +   +  +A   L Y                         V   +  G   Y GF  
Sbjct: 145 WVIDNEDLQERARLLLPYYHNED---------------PLKSKVAAALMPGFLLYGGFYL 189

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   +K+   ++  + I+RD+ +H  +      +           E +     +L +
Sbjct: 190 PFWLSARSKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVARLSEARKAEMKTFVFELLDK 249

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
             + E  +  +      +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 250 LIVAEKKFLTKLYEGFDL---ADDAIRFSVYNAGKFLQNLGYDSPFTEEETRIEPEIFAQ 306

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 307 LSARADENHDFFSGNGSSYVMG 328


>gi|161508077|ref|YP_001578044.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           helveticus DPC 4571]
 gi|160349066|gb|ABX27740.1| ribonucleoside-diphosphate reductase [Lactobacillus helveticus DPC
           4571]
          Length = 340

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 110/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 24  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
                  ++  A+   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 81  FTGLTLLDTTQASVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y                         V   +  G   Y 
Sbjct: 141 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 185

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 245

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE      +         +  + A +    +G +  F   E   +P 
Sbjct: 246 FLDKLIDLEKKYLHELYGDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYISPE 302

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339


>gi|146322252|ref|YP_001174719.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis]
 gi|145968743|gb|ABQ00021.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis]
          Length = 316

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 70/316 (22%), Positives = 126/316 (39%), Gaps = 31/316 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A    W+ T VP+ +DL  W+    L+D E+ ++K+ +G  A  ++L +   + A+ 
Sbjct: 20  WDKATAQFWLDTRVPVSNDLLDWR---KLSDMEKEVVKKAVGGLALLDTLQSEEGLYALK 76

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
           ++    + R  L    F E++H+ T+  I+ SL   +   E++        +  KA    
Sbjct: 77  KNARTLKERAVLSDFTFMESIHAKTYGTILISLNTFKDIEEIYTWMNNDRRMQFKAKKIN 136

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  Q  +                  + V  V  EG+ +Y+ F   L     NK+  +AE 
Sbjct: 137 EIYQNGT---------------PMQVKVASVFLEGILYYSNFFIPLWYRGQNKLANLAEL 181

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + ++RDES+H  +      Q   E      + F     + L E    E AY  E   + 
Sbjct: 182 IKLVIRDESVHGTYLGYKFRQDFNELSITEQENFTNWMYSFLEELLDNEFAYTEEVYSE- 240

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK----YTENPFPWMSEVIDLKKEKNFFETR 339
            +GL     + ++++ AN+    +G +  FK       NP   M+ +       +FF   
Sbjct: 241 -IGL-VEDIKTFVKYNANKSLQNMGFDIYFKDASANDVNPIV-MNGISIETANHDFFSQV 297

Query: 340 VTEYQQGAE---LKWD 352
              Y  G     L  D
Sbjct: 298 GAGYLMGEAEEMLDDD 313


>gi|238852996|ref|ZP_04643394.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 202-4]
 gi|282851729|ref|ZP_06261093.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 224-1]
 gi|238834391|gb|EEQ26630.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 202-4]
 gi|282557132|gb|EFB62730.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 224-1]
          Length = 335

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 110/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 19  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 76  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y                         V   +  G   Y 
Sbjct: 136 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 180

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE      +         +  + A +    +G +  F   E   +P 
Sbjct: 241 FLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334


>gi|19745563|ref|NP_606699.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS8232]
 gi|19747686|gb|AAL97198.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes
           MGAS8232]
          Length = 337

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 108/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  ++   + Y                         V   +  G   Y GF  
Sbjct: 142 WVVSTQSLQDRSRVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|322411231|gb|EFY02139.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 337

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 110/322 (34%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I RN    
Sbjct: 28  NWNHLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRNYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF  A+H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y                         V   +  G   Y GF  
Sbjct: 142 WVVSTQSLQERARVLIPYYTGND---------------PLKSKVAAAMMPGFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAGLSPEKQTEMKTFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G E  F   E    P +   
Sbjct: 247 LIDLEKAYLKELYDGFDL---AEDAIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|86156146|gb|ABC86791.1| ribonucleotide reductase beta subunit [Borrelia turicatae]
          Length = 321

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 128/332 (38%), Gaps = 26/332 (7%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           M     + N+L    Y      +       W+  E+P+ DD  +W S   L  DER + +
Sbjct: 3   MNREAINWNRLNN-GYTKM--FWDQNIRQFWVDEEIPISDDKLVWNS---LDIDERDVYE 56

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           + LG     ++   +  +  I   + N   +  L      E +H+ ++  I +SL   E 
Sbjct: 57  KVLGGLTLLDTEQGSVGMPRIALAIDNLAYKPVLGFMGAMEHMHAKSYSSIFSSLSNIER 116

Query: 144 --ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
              +F+  +   +   K +  L     +            D+  L       V  E   F
Sbjct: 117 IDYIFDWVKTYRNFQDKLDLILGKYNNI-----------HDRMSLYKALCTSVFLETFLF 165

Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
           Y+GF   L L    KM+   E    I+RDES+H  F   +  +   +      +   +++
Sbjct: 166 YSGFFYPLYLAGQGKMINSGEIINLILRDESVHGVFVGLLAQEEFNKMTSREQEFAYKEA 225

Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTEN 318
             +L     LE AY  +      +GL +   + ++++ A++    +G EP F       N
Sbjct: 226 MFILDRLYDLEKAYTKDLY--SSIGLESA-VDVFVRYNADKALMNLGFEPTFNIQDIDVN 282

Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           P   ++ +    K  +FF T+   Y +  +++
Sbjct: 283 PLV-LNGLRTDTKTHDFFSTKGNGYIKPMKIE 313


>gi|293380788|ref|ZP_06626833.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 214-1]
 gi|290922652|gb|EFD99609.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 214-1]
          Length = 335

 Score =  116 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 110/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 19  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 76  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y                         V   +  G   Y 
Sbjct: 136 EAHEWVVNNDTLQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 180

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE      +         +  + A +    +G +  F   E   +P 
Sbjct: 241 FLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETTDDDWD 334


>gi|323467364|gb|ADX71051.1| Ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
           helveticus H10]
          Length = 340

 Score =  116 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 109/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W     L+DD + +I R 
Sbjct: 24  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSWNQ---LSDDWQQLITRT 80

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 81  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y                         V   +  G   Y 
Sbjct: 141 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 185

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFN 245

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE      +         +  + A +    +G +  F   E   +P 
Sbjct: 246 FLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYISPE 302

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339


>gi|300173988|ref|YP_003773154.1| ribonucleoside-diphosphate reductase subunit beta [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299888367|emb|CBL92335.1| ribonucleoside-diphosphate reductase, beta subunit [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 325

 Score =  116 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 113/303 (37%), Gaps = 26/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    ++D ER  +    G   + ++L + + +  + 
Sbjct: 26  WEKLTQQFWLDTRIPISNDLKTWR--GNMSDQERQTMNLVFGGLTTLDTLQSQDGMAQLK 83

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWAL 163
             + N +    L    F E+VH+ ++  I  +L        +F+       +  KAN   
Sbjct: 84  LDVVNQKEEAVLNNIQFMESVHAKSYSSIFETLNEKTEIEAIFDWADTNEFLQYKANRIN 143

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              QT S                       V  E   FY+GF   L     NKM+ +AE 
Sbjct: 144 GIYQTGSPLQKKI---------------ASVFLETFLFYSGFYTPLYFLGHNKMLNVAEI 188

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          + P     E Q     +L+E    E  Y H+     
Sbjct: 189 IKLIIRDESVHGTYIGYKFQIGFNQLPAEEKSELQSWMYDLLYELYENEEKYTHQLYDD- 247

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            +G        ++++ AN+    +G EP+F       NP   M+ +       +FF    
Sbjct: 248 -LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGADDVNPVV-MNGISTSTANHDFFSGVG 304

Query: 341 TEY 343
             Y
Sbjct: 305 NGY 307


>gi|256849455|ref|ZP_05554887.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
           crispatus MV-1A-US]
 gi|262046124|ref|ZP_06019087.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|256713571|gb|EEU28560.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
           crispatus MV-1A-US]
 gi|260573454|gb|EEX30011.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus MV-3A-US]
          Length = 335

 Score =  116 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 110/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 19  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 76  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y                         V   +  G   Y 
Sbjct: 136 EAHEWVVNNDTLQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 180

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE      +         +  + A +    +G +  F   E   +P 
Sbjct: 241 FLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334


>gi|326783253|ref|YP_004323801.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33]
 gi|310005200|gb|ADO99589.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33]
          Length = 296

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 66/267 (24%), Positives = 107/267 (40%), Gaps = 23/267 (8%)

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             +S+      +A   + S PE    +L   F E +HS ++ YII ++  D  E+F+   
Sbjct: 1   MLDSVQGRGPGMAFIPYCSLPELEASMLVWEFMEMIHSRSYTYIIKNVYPDPSEVFDTIL 60

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDAD-----------------QEFLQDLFVFY 193
           E   I  +A+   +      + +    T                     +  L       
Sbjct: 61  EDEKILDRASSVTESYDDFINHAHQYDTSTMWELAKDGHYAGQFDRRELKRKLYRAVANV 120

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
            + EG+ FYT FA   + G    M G A+    I RDES HL    +++N+ +  +    
Sbjct: 121 NILEGIRFYTSFACSFAFGENKLMEGSAKILSLIARDESQHLVLTQNILNKWRDGDDPEM 180

Query: 254 T---KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGL 309
               KE Q    +M   A   E  +A      G  +GLN      Y+++IANRR   I +
Sbjct: 181 DIIAKEEQSWVMSMFQRAVDEEKMWAEYLFKNGSMIGLNERLLHNYVEWIANRRMKAICI 240

Query: 310 EPLF--KYTENPFPWMSEVIDLKKEKN 334
           +P+F      NP PW    ++ K ++N
Sbjct: 241 KPMFDIPAKNNPLPWTEHWLNSKGQQN 267


>gi|25010526|ref|NP_734921.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae NEM316]
 gi|23094879|emb|CAD46097.1| unknown [Streptococcus agalactiae NEM316]
          Length = 336

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 113/322 (35%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P ++P+ +DL  W++   L  D + +I R     
Sbjct: 27  NWNKLNDDKDLEVWN---RVTQNFWLPEKIPVSNDLNSWRT---LDADWQQLITRTFTGL 80

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +S+ A    +A  +H      +      AF  A+H+ ++  I ++L   +   E   
Sbjct: 81  TLLDSVQATVGDIAQIKHSQTDHEQVIYANFAFMVAIHARSYGTIFSTLCTSQQIEEAHE 140

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +  S+ A++   + +                         V   +  G   Y GF  
Sbjct: 141 WVVDTESLQARSRILIPFYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 185

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      Q   +       E +     +L++
Sbjct: 186 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVAKLSVEKQAEMKTFVFDLLYQ 245

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY +E      +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 246 LIDLEKAYLYELYDGFDL---AEDAIRFSNYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 302

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 303 LSARADENHDFFSGNGSSYIMG 324


>gi|9625893|ref|NP_040141.1| ribonucleotide reductase subunit 2 [Human herpesvirus 3]
 gi|132630|sp|P09247|RIR2_VZVD RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           Short=R2; AltName: Full=Ribonucleotide reductase small
           subunit
 gi|259645448|sp|Q4JQV7|RIR2_VZVO RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           Short=R2; AltName: Full=Ribonucleotide reductase small
           subunit
 gi|60007|emb|CAA27901.1| ribonucleotide reductase (small subunit) [Human herpesvirus 3
           strain Dumas]
 gi|46981429|gb|AAT07700.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
 gi|46981500|gb|AAT07776.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
 gi|66865986|gb|AAY57634.1| ORF18 [Human herpesvirus 3]
 gi|66866058|gb|AAY57705.1| ORF18 [Human herpesvirus 3]
 gi|83721826|emb|CAI44861.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
 gi|90992817|gb|ABE03036.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
 gi|91980319|gb|ABE67126.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481816|gb|ABF21518.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481890|gb|ABF21591.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94481964|gb|ABF21664.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482038|gb|ABF21737.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482112|gb|ABF21810.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482186|gb|ABF21883.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482260|gb|ABF21956.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482334|gb|ABF22029.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482408|gb|ABF22102.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482482|gb|ABF22175.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|94482556|gb|ABF22248.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
 gi|111184743|gb|ABH08451.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
 gi|157965778|gb|ABW06924.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
          Length = 306

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 125/316 (39%), Gaps = 30/316 (9%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
                    + +N W+ ++  ++DD   ++  + LT+DE +  +    F ++++ LV  N
Sbjct: 16  PDINNLRALSISNRWLESDFIIEDD---YQYLDCLTEDELIFYRFIFTFLSAADDLVNVN 72

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
            + ++ +  S  +   Y + Q   E VH+  +  I   L   +  L   Y  V       
Sbjct: 73  -LGSLTQLFSQKDIHHYYIEQECIEVVHARVYSQIQLMLFRGDESLRVQYVNVTINNPSI 131

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
              +Q+ +     + +   K          ++  ++ EG++F + FA I  L      V 
Sbjct: 132 QQKVQWLEEKVRDNPSVAEK----------YILMILIEGIFFVSSFAAIAYLRNNGLFVV 181

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
             +    I RDE++H +    + N    E P +       +   +  EA  +E A+    
Sbjct: 182 TCQFNDLISRDEAIHTSASCCIYNNYVPEKPAIT------RIHQLFSEAVEIECAFLKSH 235

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNF 335
            PK  + +N  +  QY++F A+R    I +  LF      ++ P  +M       K  NF
Sbjct: 236 APKTRL-VNVDAITQYVKFSADRLLSAINVPKLFNTPPPDSDFPLAFM----IADKNTNF 290

Query: 336 FETRVTEYQQGAELKW 351
           FE   T Y  G  +  
Sbjct: 291 FERHSTSYA-GTVIND 305


>gi|296111477|ref|YP_003621859.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc
           kimchii IMSNU 11154]
 gi|295833009|gb|ADG40890.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc
           kimchii IMSNU 11154]
          Length = 325

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 115/303 (37%), Gaps = 26/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    ++D ER  +    G   + ++L + + +  + 
Sbjct: 26  WEKLTQQFWLDTRIPISNDLKNWR--GNMSDQERQTMNLVFGGLTTLDTLQSQDGMAQLK 83

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWAL 163
             + N +    L    F E+VH+ ++  I  +L        +F+       +  KAN   
Sbjct: 84  LDVVNQKEEAVLNNIQFMESVHAKSYSSIFETLNEKSEIEAIFDWADTNEFLQYKANRIN 143

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              QT +S                      V  E   FY+GF   L     NKM+ +AE 
Sbjct: 144 DIYQTGTSLQKKI---------------ASVFLETFLFYSGFYTPLYFLGHNKMLNVAEI 188

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          + P    +  Q     +L+E    E  Y HE     
Sbjct: 189 IKLIIRDESVHGTYIGYKFQIGFNKLPLAEQESLQSWMYDLLYELYENEEKYTHELYDD- 247

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            +G +      ++++ AN+    +G EP+F       NP   M+ +       +FF    
Sbjct: 248 -LGWS-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGISTSTANHDFFSGVG 304

Query: 341 TEY 343
             Y
Sbjct: 305 NGY 307


>gi|312984313|ref|ZP_07791656.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus CTV-05]
 gi|310894278|gb|EFQ43357.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus CTV-05]
          Length = 335

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 110/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 19  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 76  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y                         V   +  G   Y 
Sbjct: 136 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 180

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE      +         +  + A +    +G +  F   E   +P 
Sbjct: 241 FLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGYDTPFTAEETYISPE 297

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334


>gi|300362830|ref|ZP_07059004.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri JV-V03]
 gi|300353120|gb|EFJ68994.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri JV-V03]
          Length = 340

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 109/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W     L+DD + +I R 
Sbjct: 24  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSWNQ---LSDDWQQLITRT 80

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 81  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y                         V   +  G   Y 
Sbjct: 141 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 185

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 245

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE      +         +  + A +    +G +  F   E   +P 
Sbjct: 246 FLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYISPE 302

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339


>gi|71903000|ref|YP_279803.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS6180]
 gi|71802095|gb|AAX71448.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS6180]
          Length = 337

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 108/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  ++   + Y                         V   +  G   Y GF  
Sbjct: 142 WVVSTQSLQDRSRVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYDSPFTDEETRISPEVFAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|284931055|gb|ADC30993.1| Ribonucleoside-diphosphate reductase subunit beta [Mycoplasma
           gallisepticum str. F]
          Length = 339

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 107/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W     LT + + ++ R     
Sbjct: 30  NWNVINDPKDLEVWT---RVTQNFWLPEKIPVSNDLKSWNE---LTPEWKQLVTRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +A   +      +      +F   VH+ ++  I ++L   +   E   
Sbjct: 84  TLLDTIQCTLGDIAQIPNSLTDHEQFVYANFSFMVGVHARSYGTIFSTLNTSDEIEEAHE 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  + A+A + + Y  +                      +   +  G   Y GF  
Sbjct: 144 WVINNEKLQARAKFLVPYYTSDD---------------PLKSKIAAALMPGFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +          + P    +E+++    +L +
Sbjct: 189 PFYLAARGKLPNTSDIIRLILRDKVIHNYYSGYKYRLKVQKLPKEKQEEYKKFVFEILDK 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE  +  E       GL A     +  + A +     G E  F   E    P +   
Sbjct: 249 LIELEKDFLRELYDG--FGL-ADEAIAFSLYNAGKFLQNCGYESPFTPEETKISPEVFAQ 305

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 306 LSARADENHDFFSGNGSSYIMG 327


>gi|251781888|ref|YP_002996190.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390517|dbj|BAH80976.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|323126699|gb|ADX23996.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 337

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 109/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNHLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF  A+H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y                         V   +  G   Y GF  
Sbjct: 142 WVVSTQSLQERARVLIPYYTGND---------------PLKSKVAAAMMPGFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMSNTSDIIRLILRDKVIHNYYSGYKYQQKVAGLSPEKQAEMKTFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G E  F   E    P +   
Sbjct: 247 LIDLEKAYLKELYDGFDL---AEDAIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|139474322|ref|YP_001129038.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes str. Manfredo]
 gi|134272569|emb|CAM30835.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
           pyogenes str. Manfredo]
          Length = 337

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 108/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y                         V   +  G   Y GF  
Sbjct: 142 WVVSTQSLQDRARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYDSPFTDEETRISPEVFAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|227833718|ref|YP_002835425.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454734|gb|ACP33487.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 341

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/338 (17%), Positives = 118/338 (34%), Gaps = 44/338 (13%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +DL  W+    +T +ER +  R     
Sbjct: 32  NWNRVSDDKDLEVWN---RLTANFWLPEKVPLSNDLPAWQ---RMTPEERNLTMRVFTGL 85

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
            + +++ A    +   +              AF ++VH+ ++  + ++L   +   E + 
Sbjct: 86  TTLDTVQATVGEICQIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLSSTKEIDEAYR 145

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  + A+A   L +            +                       Y GF  
Sbjct: 146 WAVNNDLLQARAKKVLAHYFGPDPLKRKVSSTLLSSL---------------LLYAGFYL 190

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       +   A+  + I+RD+++H  +      +       L  KE    + ++L E
Sbjct: 191 PLHFSVHATLTNTADMIRLILRDKAVHGYYSGYKYQRGLESTTPLRQKEMHDFTISLLEE 250

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE+ Y+ E      +GL       ++++ AN+    +G    F   E   NP     
Sbjct: 251 LYALELDYSGELYE--PLGL-MDDVAVFVRYNANKALMNLGYPDYFPPEETEVNP----- 302

Query: 325 EVI-----DLKKEKNFFETRVTEYQQG-----AELKWD 352
           E++        +  +FF    + Y  G     ++  WD
Sbjct: 303 EILAALAPGADENHDFFSGSGSSYVIGTAEETSDDDWD 340


>gi|293572347|ref|ZP_06683339.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
 gi|291607581|gb|EFF36911.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
          Length = 316

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 126/316 (39%), Gaps = 31/316 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A    W+ T VP+ +DL  W+    L+D E+ ++K+ +G  A  ++L +   + A+ 
Sbjct: 20  WDKATAQFWLDTRVPVSNDLLDWR---KLSDMEKEVVKKAVGGLALLDTLQSEEGLYALK 76

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
           ++    + R  L    F E++H+ T+  I+ SL   +   E++        +  KA    
Sbjct: 77  KNARTLKERAVLSDFTFMESIHAKTYGTILISLNTFKDIEEIYTWMNNDRRMQFKAKKIN 136

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  Q  +                  + V  V  EG+ +Y+ F   L     NK+  +AE 
Sbjct: 137 EIYQNGT---------------PMQVKVASVFLEGILYYSNFFIPLWYRGQNKLANLAEL 181

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + ++RDES+H  +      Q   E      + +     + L E    E AY  E   + 
Sbjct: 182 IKLVIRDESVHGTYLGYKFRQDFNELSITEQENYTNWMYSFLEELLDNEFAYTEEVYSE- 240

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK----YTENPFPWMSEVIDLKKEKNFFETR 339
            +GL     + ++++ AN+    +G +  FK       NP   M+ +       +FF   
Sbjct: 241 -IGL-VEDIKTFVKYNANKSLQNMGFDIYFKDASANDVNPIV-MNGISIETANHDFFSQV 297

Query: 340 VTEYQQGAE---LKWD 352
              Y  G     L  D
Sbjct: 298 GAGYLMGEAEEMLDDD 313


>gi|222150734|ref|YP_002559887.1| ribonucleoside-diphosphate reductase minor subunit [Macrococcus
           caseolyticus JCSC5402]
 gi|222119856|dbj|BAH17191.1| ribonucleoside-diphosphate reductase minor subunit [Macrococcus
           caseolyticus JCSC5402]
          Length = 322

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 113/311 (36%), Gaps = 20/311 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +    +  W+ +E  +  D+A WK    LTDDE+      L      ++  A++ +  I
Sbjct: 16  FWRQNISQMWVESEFKVSKDIASWKE---LTDDEKFTFNHALAGLTGLDTHQADDGMPLI 72

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
             H  +   +         E +H+ ++ +I T+L         L N     P +  K+  
Sbjct: 73  GLHTQDLRKKAVYSFMGMMEQIHAKSYSHIFTTLLPSAETNDLLDNWVVNEPHLKFKSEK 132

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +     L         K+A         V  V  E   FY+GF   L L    +M    
Sbjct: 133 IVSRYHKL-------WGKEATIYDQYMARVASVFLETFLFYSGFYYPLYLAGQGRMTTSG 185

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  + I+ DES+H  F       ++ E          ++   +L E    E +Y      
Sbjct: 186 EIIRKILLDESIHGVFTGLDAQSLRNEMTEDEKIRADKEMYDLLKELYANEESYTKMLYD 245

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETR 339
           +  VGL       Y+Q+  N+    +G EP F+    NP   +   ++   K  +FF  +
Sbjct: 246 R--VGLT-EDVLNYVQYNGNKALANLGFEPYFEEKGFNPI--IENALNTSTKNHDFFSVK 300

Query: 340 VTEYQQGAELK 350
              Y     ++
Sbjct: 301 GDGYVIALNVE 311


>gi|227878534|ref|ZP_03996468.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus
           JV-V01]
 gi|227861868|gb|EEJ69453.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus
           JV-V01]
          Length = 352

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 109/337 (32%), Gaps = 31/337 (9%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W     L+DD + +I R 
Sbjct: 36  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSWNQ---LSDDWQQLITRT 92

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 93  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 152

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y                         V   +  G   Y 
Sbjct: 153 EAHEWVVNNDTLQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 197

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 198 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 257

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
            L +   LE  Y HE      +         +  + A +    +G +  F   E   +P 
Sbjct: 258 FLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 314

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
            +        +  +FF    + Y  G      +  WD
Sbjct: 315 VFAQLSAQADENHDFFSGNGSSYVMGTGEETTDDDWD 351


>gi|238594383|ref|XP_002393469.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553]
 gi|215460986|gb|EEB94399.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553]
          Length = 184

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 2   ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
            +   L     G+  +   ++ +L        L P++Y   W+ Y  A  + W   E+ +
Sbjct: 67  EDLEELRKQFVGDIELPESEEPLLKESKRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDL 126

Query: 62  QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
             DL  W   N + D+ER  I   L FFA+S+ +V  N+V      +   E R +   Q
Sbjct: 127 SKDLHDWN--NRMNDNERHFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQ 183


>gi|46401830|ref|YP_006922.1| putative aerobic ribonucleoside diphosphate reductase, small
           subunit [Enterobacteria phage T5]
 gi|45775008|gb|AAS77140.1| putative aerobic ribonucleoside diphosphate reductase, small
           subunit [Enterobacteria phage T5]
 gi|51512032|gb|AAU05231.1| ribonucleotide reductase beta subunit [Enterobacteria phage T5]
 gi|59897231|gb|AAX12026.1| ribonucleoside diphosphate reductase I beta chain [Enterobacteria
           phage T5]
          Length = 381

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 121/314 (38%), Gaps = 25/314 (7%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           +       L A +  W  TE+ ++ D   W     L  + + +   NL +   ++S ++ 
Sbjct: 32  HPELERLALLARSQFWTETEISLEADKKQW---PNLPREIQEITLLNLAWQTQTDSFISR 88

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
               AI   +S PE    L + ++ E +HS  +  II ++  D  E  +   +     A+
Sbjct: 89  APEAAIMPLVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAFAR 148

Query: 159 ANWALQYTQTL---------------SSPSFTTGTKDADQEFLQDLFVFYVVF---EGMW 200
              +++    L                +    T   +  +E    L   Y      E M 
Sbjct: 149 IADSVELFDELYQLGQYFIAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGLEAMQ 208

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  FA   +L   + + GIA+  Q I +DE+LH      +I  +  +       E   K
Sbjct: 209 FYASFACTFALAENDILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVDEAVAK 268

Query: 261 SRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFKYT 316
           +   L +    EI + H     +  +GLNA   E+Y+ F+       IG+E    L   T
Sbjct: 269 APAQLLKTLKTEIEWGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVEWPSHLPVIT 328

Query: 317 ENPFPWMSEVIDLK 330
           +NP PW+   +D  
Sbjct: 329 KNPIPWIMNWLDTT 342


>gi|269867180|ref|XP_002652512.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220062330|gb|EED41544.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 196

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +L  D
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142

Query: 142 EGE---LFNMYREVPSITAKANWALQYT 166
           + E   LFN    +PSI  KA WA ++ 
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWI 170


>gi|182682906|ref|YP_001837030.1| putative aerobic ribonucleoside diphosphate reductase, small
           subunit [Enterobacteria phage EPS7]
 gi|182630618|gb|ACB97550.1| putative aerobic ribonucleoside diphosphate reductase, small
           subunit [Enterobacteria phage EPS7]
          Length = 381

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/314 (22%), Positives = 121/314 (38%), Gaps = 25/314 (7%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           +       L   +  W  TE+ ++ D   W     L  D + +   NL +   ++S ++ 
Sbjct: 32  HPELERLALLQRSQFWTETEISLEADKKQW---PNLPRDIQEITLLNLAWQTQTDSFISR 88

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
               AI   +S PE    L + ++ E +HS  +  II ++  D  E  +   +     A+
Sbjct: 89  APEAAIMPLVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAFAR 148

Query: 159 ANWALQYTQTL---------------SSPSFTTGTKDADQEFLQDLFVFYVVF---EGMW 200
              +++    L                +    T   +  +E    L   Y      E M 
Sbjct: 149 IADSVELFDELYLLGQYFLAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGLEAMQ 208

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  FA   +L   + + GIA+  Q I +DE+LH      +I  +  +       E   K
Sbjct: 209 FYASFACTFALAENDILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVDEALAK 268

Query: 261 SRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFKYT 316
           + T L +    EI + H     +  +GLNA   E+Y+ F+       IG+E    L   T
Sbjct: 269 APTQLLKTLKTEIEWGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVEWPSHLPVIT 328

Query: 317 ENPFPWMSEVIDLK 330
           +NP PW+   +D  
Sbjct: 329 KNPIPWIMNWLDTT 342


>gi|56807592|ref|ZP_00365501.1| COG0208: Ribonucleotide reductase, beta subunit [Streptococcus
           pyogenes M49 591]
          Length = 311

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 108/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 2   NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 55

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 56  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 115

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y                         V   +  G   Y GF  
Sbjct: 116 WVVSTQSLQDRARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 160

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 161 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 220

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G E  F   E    P +   
Sbjct: 221 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYESPFTDEETRVSPEVFAQ 277

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 278 LSARADENHDFFSGNGSSYVMG 299


>gi|326632980|ref|YP_004306569.1| putative aerobic ribonucleoside diphosphate reductase small subunit
           [Enterobacteria phage SPC35]
 gi|321272174|gb|ADW80066.1| putative aerobic ribonucleoside diphosphate reductase small subunit
           [Enterobacteria phage SPC35]
          Length = 381

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 120/314 (38%), Gaps = 25/314 (7%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           +       L   +  W  TE+ ++ D   W     L  + + +   NL +   ++S ++ 
Sbjct: 32  HPELERLALLQRSQFWTETEISLEADKKQW---GNLPREIQEITLLNLAWQTQTDSFISR 88

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
               AI   +S PE    L + ++ E +HS  +  II ++  D  E  +   +     A+
Sbjct: 89  APEAAIMPLVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAFAR 148

Query: 159 ANWALQYTQTL---------------SSPSFTTGTKDADQEFLQDLFVFYVVF---EGMW 200
              +++    L                +    T   +  +E    L   Y      E M 
Sbjct: 149 IADSVELFDELYQLGQYFIAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGLEAMQ 208

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY  FA   +L   + + GIA+  Q I +DE+LH      +I  +  +       E   K
Sbjct: 209 FYASFACTFALAENDILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVNEAVAK 268

Query: 261 SRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFKYT 316
           +   L +    EI + H     +  +GLNA   E+Y+ F+       IG++    L   T
Sbjct: 269 APAQLLKTLKTEIEWGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVKWPSHLPVIT 328

Query: 317 ENPFPWMSEVIDLK 330
           +NP PW+   +D  
Sbjct: 329 KNPIPWIMNWLDTT 342


>gi|94993745|ref|YP_601843.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10750]
 gi|94547253|gb|ABF37299.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10750]
          Length = 337

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 108/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y                         V   +  G   Y GF  
Sbjct: 142 WVVSTQSLQDRARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G E  F   E    P +   
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|295397108|ref|ZP_06807219.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
 gi|294974650|gb|EFG50366.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
          Length = 338

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 108/316 (34%), Gaps = 31/316 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +    +  W+ T +P+ +D   W+    LT +ER ++ +      + ++L +      + 
Sbjct: 42  WEKLTSQFWLDTRIPVSNDRDDWR---ILTKEERDVVNKAFAGLTALDTLQSEEGANVMR 98

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
             +        L    F E+VH+ ++  I  SL       E+F+       +  KA    
Sbjct: 99  DAVRTQHEEAVLNNILFMESVHAKSYSTIFISLNTTREIDEIFDWANNNEYLQYKARRIN 158

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  Q  +                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 159 EIYQNGTGLQQKV---------------ASVFLETYLFYSGFYAPLWYLGNNKLENVAEI 203

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          +       E +     +L +    E  Y  E   + 
Sbjct: 204 IKLIIRDESVHGTYLGYKFQLGYNQLSIDEQNELKDWMYALLFDLMENEEKYTEEIYTQ- 262

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK----YTENPFPWMSEVIDLKKEKNFFETR 339
            VG        ++ + AN+    +G EP +        NP   M+ +       +FF   
Sbjct: 263 -VGWTKE-VNTFVHYNANKALQNLGFEPFYPDGTAENVNPIV-MNGISTDSSNHDFFSQV 319

Query: 340 VTEYQQG---AELKWD 352
              Y  G   A    D
Sbjct: 320 GNSYLMGESEAMGDDD 335


>gi|227504052|ref|ZP_03934101.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
 gi|227199382|gb|EEI79430.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
           6940]
          Length = 304

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 113/317 (35%), Gaps = 36/317 (11%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +     N W+P +VP+ +DL+ W+    +T  ER +  R      + +++ A    + 
Sbjct: 8   EVWNRLTANFWLPEKVPLSNDLSAWQ---KMTPSERNLTMRVFTGLTTLDTVQATVGEIC 64

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             +       +      AF ++VH+ ++  + ++L   +   E +        + A+A  
Sbjct: 65  QIQDARTEHEQAVYTNIAFMQSVHARSYSSVFSTLSSTKEIDEAYRWAVNNDLLQARAKK 124

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L +            +                       Y GF   L       +   A
Sbjct: 125 VLTHYYGPDPLKRKVSSTLLSSL---------------LLYAGFYLPLHFSVHATLTNTA 169

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RD+++H  +      +    +     +E +  + ++L E   LE+ Y+ E   
Sbjct: 170 DMIRLILRDKAVHGYYSGYKYQRGLESSSPQRQQEMKNFTISLLEELYSLELEYSGELYE 229

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI-----DLKKEK 333
              +GL       ++++ AN+    +G    F   E   NP     E++        +  
Sbjct: 230 --PLGL-MDDVAVFVRYNANKALMNLGYPDYFPPEETEVNP-----EILAALAPGADENH 281

Query: 334 NFFETRVTEYQQGAELK 350
           +FF    + Y  G   +
Sbjct: 282 DFFSGSGSSYVIGTAEE 298


>gi|209558898|ref|YP_002285370.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes NZ131]
 gi|209540099|gb|ACI60675.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
           [Streptococcus pyogenes NZ131]
          Length = 337

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 108/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y                         V   +  G   Y GF  
Sbjct: 142 WVVSTQSLQDRARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G E  F   E    P +   
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYESPFTDEETRVSPEVFAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|31544249|ref|NP_852827.1| ribonucleoside-diphosphate reductase subunit beta [Mycoplasma
           gallisepticum str. R(low)]
 gi|26398734|sp|Q9XC20|RIR2_MYCGA RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|5565932|gb|AAD45275.1|AF152114_3 ribonucleoside-diphosphate reductase beta chain [Mycoplasma
           gallisepticum]
 gi|31541093|gb|AAP56395.1| Ribonucleoside-diphosphate reductase subunit beta [Mycoplasma
           gallisepticum str. R(low)]
 gi|284930288|gb|ADC30227.1| Ribonucleoside-diphosphate reductase subunit beta [Mycoplasma
           gallisepticum str. R(high)]
          Length = 339

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 108/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W     LT + + ++ R     
Sbjct: 30  NWNVINDPKDLEVWT---RVTQNFWLPEKIPVSNDLKSWNE---LTPEWKQLVTRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++      +A   +      +      +F   VH+ ++  I ++L   +   E   
Sbjct: 84  TLLDTIQCTLGDIAQIPNSLTDHEQFVYANFSFMVGVHARSYGTIFSTLNTSDEIEEAHE 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  + A+A + + Y  +                      +   +  G   Y GF  
Sbjct: 144 WVINNEKLQARAKFLVPYYTSDD---------------PLKSKIAAALMPGFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +          + P    +E+++    +L++
Sbjct: 189 PFYLAARGKLPNTSDIIRLILRDKVIHNYYSGYKYRLKVQKLPKEKQEEYKKFVFEILYK 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE  +  E       GL A     +  + A +     G E  F   E    P +   
Sbjct: 249 LIELEKDFLRELYDG--FGL-ADEAIAFSLYNAGKFLQNCGYESPFTPEETKISPEVFAQ 305

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 306 LSARADENHDFFSGNGSSYIMG 327


>gi|255683173|ref|YP_003084381.1| UL40 [Duck enteritis virus]
 gi|158343199|gb|ABW35292.1| ribonucleotide reductase subunit 2 [Anatid herpesvirus 1]
 gi|208401182|gb|ACI26683.1| UL40 [Anatid herpesvirus 1]
 gi|254839988|gb|ACT83534.1| UL40 [Anatid herpesvirus 1]
          Length = 355

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 118/304 (38%), Gaps = 27/304 (8%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ +E+   DD A     + LT  E    +    F ++++ LV  N +  +       
Sbjct: 74  NRWLESELVFLDDAAD---VDKLTPSELDFYRFIFTFLSAADDLVNCN-LGNLMGLFEEK 129

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           + + Y + Q   EAVHS  +  I   L  ++      Y +           +++      
Sbjct: 130 DIQHYYVEQESIEAVHSRVYSIIQLILFKNDATARAEYVKKAIRETSIRSKVKWI----- 184

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                  +  + E + + ++  ++ EG++F   FA I  +   N  V   +    I RDE
Sbjct: 185 -----SERVEECEDIPEKYILMILIEGLFFAASFAAIAYMRTRNIFVVTCQANTMISRDE 239

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
           ++H      + N+   +      K    +   +  EA  LE  +     P     ++  +
Sbjct: 240 TIHTKASCVIYNKHLQKYK----KPSTCRIYKLFSEAVKLECEFLRARAPSDSAIIDTEA 295

Query: 292 CEQYMQFIANRRCHQIGLEPLFKYT----ENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
              Y++F A+R    IGL PLF       + P  +M+      ++ NFFE R T Y  G+
Sbjct: 296 ICSYVRFNADRLLSDIGLAPLFDEPPPKHDFPLAFMA----TSQQTNFFERRNTTYA-GS 350

Query: 348 ELKW 351
            L  
Sbjct: 351 VLND 354


>gi|48696741|ref|YP_024565.1| ORF20 [Ostreid herpesvirus 1]
 gi|81986458|sp|Q6R7K3|RIR2_OSHVF RecName: Full=Ribonucleoside-diphosphate reductase small chain
 gi|41352405|gb|AAS00912.1| ORF20 [Ostreid herpesvirus 1]
          Length = 579

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 143/347 (41%), Gaps = 40/347 (11%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           P+  G    + D    +  + D   L P  Y    +      ++ W  TE+  + D+  W
Sbjct: 53  PLYGGATDHHKD----IVGKYDHALLKPAVYQQLRDFATKMESSSWQQTEIDAESDIPTW 108

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           +    ++++ER  +++ L FFA  ++LV + I +        PEC+ ++  Q   E VH 
Sbjct: 109 EQ---ISENERDCVRKVLAFFAVGDTLVKDRIAI-FADEFPLPECKDFIDWQTVNEGVHQ 164

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSI-----TAKANWALQYTQTLSSPSFTTGTKDADQ 183
             +   + +L  D+  L ++              K +W  +     +             
Sbjct: 165 RVYNNYLDALVKDKIYLADLVNAYKDPEFAPIKKKVDWLGKIISVENDSRG--------- 215

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
               ++ V  V  E + F   FA +L   RA  M  +    ++I RDE+LH  F  +++ 
Sbjct: 216 ----EMVVGQVCTEAIMFAASFAILLKF-RAPYMRALVLGNEFIRRDETLHFRFYAELLR 270

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
                   +  +   ++   +L EAT +E+ +A   +P+G   +      Q+++   N+ 
Sbjct: 271 -------LMPDRPSDERIAELLTEATEIELEFAEYVVPEGVKYITKDRLIQHVKANTNQV 323

Query: 304 CHQIGLEPLF-----KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           C  + + P++         +P  +M+ +   +++ NFFE + TEY  
Sbjct: 324 CEMLDINPIYFDQKGNVLLSPLLYMNTLES-EQKINFFEGKATEYNT 369


>gi|240047145|ref|YP_002960533.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           conjunctivae HRC/581]
 gi|239984717|emb|CAT04689.1| Ribonucleoside-diphosphate reductase beta chai [Mycoplasma
           conjunctivae]
          Length = 344

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 111/322 (34%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W+S   L+   + +I R     
Sbjct: 35  NWNVINDPKDLEVWN---RVVQNFWIPEKIPVSNDLDTWRS---LSPVWQRLITRTFTGL 88

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF   VH+ ++  I ++L   E   E   
Sbjct: 89  TLLDTIQATIGDVAQIQHSLTDHEQVIYANFAFMVGVHARSYGTIFSTLCTSEEIEEAHE 148

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   + +  +                      V   +  G   Y GF  
Sbjct: 149 WVINNKKLQERAKALIPFYVSDD---------------PLKSKVAAAMMPGFLLYGGFYL 193

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   +K+   ++  + I+RD+ +H  +      +   +      +E +     +L++
Sbjct: 194 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKYQRKVEKLSPEKQQEMKDFVFDLLYK 253

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE  Y +E   +  +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 254 LIDLEKEYLYELYEEVDL---AEPAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 310

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 311 LSARADENHDFFSGNGSSYVMG 332


>gi|15674552|ref|NP_268726.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes M1 GAS]
 gi|71910160|ref|YP_281710.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS5005]
 gi|94987981|ref|YP_596082.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS9429]
 gi|94989855|ref|YP_597955.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10270]
 gi|94991863|ref|YP_599962.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS2096]
 gi|13621658|gb|AAK33447.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes M1 GAS]
 gi|71852942|gb|AAZ50965.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS5005]
 gi|94541489|gb|ABF31538.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS9429]
 gi|94543363|gb|ABF33411.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10270]
 gi|94545371|gb|ABF35418.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS2096]
          Length = 337

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 108/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y                         V   +  G   Y GF  
Sbjct: 142 WVVSTQSLQDRARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G E  F   E    P +   
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYESPFTDEETRVSPEVFAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|21909837|ref|NP_664105.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS315]
 gi|28896468|ref|NP_802818.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes SSI-1]
 gi|50913718|ref|YP_059690.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes MGAS10394]
 gi|21904023|gb|AAM78908.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes
           MGAS315]
 gi|28811719|dbj|BAC64651.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes SSI-1]
 gi|50902792|gb|AAT86507.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
           pyogenes MGAS10394]
          Length = 337

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 108/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y                         V   +  G   Y GF  
Sbjct: 142 WVVSTQSLQDRARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           E +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYDSPFTDEETRVSPEVFAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|207345015|gb|EDZ71971.1| YGR180Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 224

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 92/231 (39%), Gaps = 24/231 (10%)

Query: 122 FEEAVHSHTFQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
             E ++S  +  ++ +   D   +  F     +P +  K  +  ++              
Sbjct: 1   MMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKTAFIERWI------------- 47

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
             D     +  V +   EG++    +A +  L     M G+A   + I RD   + +F  
Sbjct: 48  SNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSC 107

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +   ++       TK   +    ++ EA  +E  Y   ++P    G++  S   Y++F+
Sbjct: 108 LLFAHLR-------TKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFV 160

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           A+      G E  +    NPF +M +V     +  FFE +V++YQ+ +++ 
Sbjct: 161 ADGLLQGFGNEKYYNAV-NPFEFMEDVATA-GKTTFFEKKVSDYQKASDMS 209


>gi|22536601|ref|NP_687452.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae 2603V/R]
 gi|76788476|ref|YP_329136.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae A909]
 gi|76798641|ref|ZP_00780867.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 18RS21]
 gi|77406064|ref|ZP_00783140.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae H36B]
 gi|77407720|ref|ZP_00784475.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae COH1]
 gi|77411308|ref|ZP_00787657.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae CJB111]
 gi|77414130|ref|ZP_00790296.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 515]
 gi|22533438|gb|AAM99324.1|AE014211_1 ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           agalactiae 2603V/R]
 gi|76563533|gb|ABA46117.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
           agalactiae A909]
 gi|76586006|gb|EAO62538.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 18RS21]
 gi|77159800|gb|EAO70945.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae 515]
 gi|77162644|gb|EAO73606.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae CJB111]
 gi|77173719|gb|EAO76833.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae COH1]
 gi|77175344|gb|EAO78137.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           agalactiae H36B]
 gi|319744439|gb|EFV96796.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           agalactiae ATCC 13813]
          Length = 336

 Score =  114 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 113/322 (35%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   K    W        N W+P ++P+ +DL  W++   L  D + +I R     
Sbjct: 27  NWNKLNDDKDLEVWN---RVTQNFWLPEKIPVSNDLNSWRT---LDADWQQLITRTFTGL 80

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +S+ A    +A  +H      +      AF  A+H+ ++  I ++L   +   E   
Sbjct: 81  TLLDSVQATVGDIAQIKHSQTDHEQVIYANFAFMVAIHARSYGTIFSTLCTSQQIEEAHE 140

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +  S+ A++   + +                         V   +  G   Y GF  
Sbjct: 141 WVVDTESLQARSRILIPFYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 185

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      Q   +       E +     +L++
Sbjct: 186 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVAKLSVEKQAEMKTFVFDLLYQ 245

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY +E      +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 246 LIDLEKAYLYELYDGFDL---AEDAIRFSIYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 302

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 303 LSARADENHDFFSGNGSSYIMG 324


>gi|312162814|ref|YP_003933799.1| ribonucleotide reductase subunit 2 [Saimiriine herpesvirus 1]
 gi|308096447|gb|ADO13787.1| ribonucleotide reductase subunit 2 [Saimiriine herpesvirus 1]
          Length = 338

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 114/309 (36%), Gaps = 34/309 (11%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D         LT  E    +    F ++++ LV  N +  +       
Sbjct: 54  NRWLETELVFAGDEED---VAALTPGELGFYRFLFTFLSAADDLVTEN-LGNLAALFPQK 109

Query: 112 ECRQYLLRQAFEEAVHSHTFQY----IITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   EAVH+  +      +  +      E        P+I  K  W      
Sbjct: 110 DILHYYVEQECIEAVHARVYGIVQLVLFANNEASRREYVAHTINHPAIRDKVEW------ 163

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + ++  ++ EG++F   FA I  L   N +    +    I
Sbjct: 164 --------LEARVGECSSVAEKYILMILIEGVFFAASFAAIAFLRTNNLLRVTCQSNDLI 215

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N      P    K    +   +  EA  +EI + H   P+    L
Sbjct: 216 SRDEAIHTTASCYIYNNYLTGYP----KPSTDRIHYLFREAVEIEIRFIHSQAPRDSHIL 271

Query: 288 NAPSCEQ---YMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNFFETRVTE 342
           +A +  Q   Y+ F A+R    I L PLF     +  FP    ++  +K  NFFE+R T 
Sbjct: 272 DAAALRQIDNYVHFCADRLLKMIKLPPLFDAPAPDCSFP--LALMFTEKHTNFFESRSTA 329

Query: 343 YQQGAELKW 351
           Y  G  +  
Sbjct: 330 YA-GTVVND 337


>gi|311741268|ref|ZP_07715092.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303438|gb|EFQ79517.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 341

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/338 (17%), Positives = 118/338 (34%), Gaps = 44/338 (13%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +DL  W+    +T +ER +  R     
Sbjct: 32  NWNRVSDDKDLEVWN---RLTTNFWLPEKVPLSNDLPAWQ---KMTPEERNLTMRVFTGL 85

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
            + +++ A    +   +              AF ++VH+ ++  + ++L   +   E + 
Sbjct: 86  TTLDTVQATVGEICQIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLSSTKEIDEAYR 145

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  + A+A   L +            +                       Y GF  
Sbjct: 146 WAVNNDLLQARAKKVLAHYFGPDPLKRKVSSTLLSSL---------------LLYAGFYL 190

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       +   A+  + I+RD+++H  +      +       L  KE    + ++L E
Sbjct: 191 PLHFSVHATLTNTADMIRLILRDKAVHGYYSGYKYQRGLESTTPLRQKEMHDFTISLLEE 250

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
              LE+ Y+ E      +GL       ++++ AN+    +G    F   E   NP     
Sbjct: 251 LYALELDYSGELYE--PLGL-MDDVAVFVRYNANKALMNLGYPDYFPPEETEVNP----- 302

Query: 325 EVI-----DLKKEKNFFETRVTEYQQG-----AELKWD 352
           E++        +  +FF    + Y  G     ++  WD
Sbjct: 303 EILAALAPGADENHDFFSGSGSSYVIGTAEETSDDDWD 340


>gi|15829010|ref|NP_326370.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089954|emb|CAC13712.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (RIBONUCLEOTIDE
           REDUCTASE) [Mycoplasma pulmonis]
          Length = 341

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 114/322 (35%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W      C N W+P ++P+ +DL  W+S   L    + +I R     
Sbjct: 32  NWNKIDDEKDLEVWN---RVCQNFWLPEKIPVSNDLETWRS---LDPIWQKVITRTFTGL 85

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A   H      +      AF  A+H+ ++  I ++L   E   E   
Sbjct: 86  TLLDTIQATIGDIAQLPHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSTEQINEAHE 145

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + +                         V   +  G   Y GF  
Sbjct: 146 WVINTKSLQDRAKILIPFYTGKD---------------PLKSKVAAALMPGFLLYGGFYL 190

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      +   +      KE ++    +L++
Sbjct: 191 PFYLSSRMKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVEKLSLEKQKEMKEFVFDLLYK 250

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325
              LE  Y +E   +  +GL A    ++  + A +    +G +  F   E        S+
Sbjct: 251 LIDLEKKYLYELYEE--IGL-AEDAIKFSLYNAGKFLQNLGYDSPFTSEETKIDAEIFSQ 307

Query: 326 VID-LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 308 LSARADENHDFFSGNGSSYVMG 329


>gi|269865675|ref|XP_002652006.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063328|gb|EED42049.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 183

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 6/157 (3%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           IK  L FFA+S+ +V  N+V      +   E + +   Q   E +HS  +  +I +L  D
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142

Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFT 175
           + E   LFN    +PSI  KA WA ++  + +S    
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFDTR 179


>gi|262184725|ref|ZP_06044146.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 306

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/324 (17%), Positives = 114/324 (35%), Gaps = 41/324 (12%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +     N W+P +VP+ +DL  W+    +T +ER +  R      + +++ A    + 
Sbjct: 8   EVWNRLTANFWLPEKVPLSNDLPAWQ---RMTPEERNLTMRVFTGLTTLDTVQATVGEIC 64

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             +              AF ++VH+ ++  + ++L   +   E +        + A+A  
Sbjct: 65  QIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLSSTKEIDEAYRWAVNNDLLQARAKK 124

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L +            +                       Y GF   L       +   A
Sbjct: 125 VLAHYFGPDPLKRKVSSTLLSSL---------------LLYAGFYLPLHFSVHATLTNTA 169

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RD+++H  +      +       L  KE    + ++L E   LE+ Y+ E   
Sbjct: 170 DMIRLILRDKAVHGYYSGYKYQRGLESTTPLRQKEMHDFTISLLEELYALELDYSGELYE 229

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI-----DLKKEK 333
              +GL       ++++ AN+    +G    F   E   NP     E++        +  
Sbjct: 230 --PLGL-MDDVAVFVRYNANKALMNLGYPDYFPPEETEVNP-----EILAALAPGADENH 281

Query: 334 NFFETRVTEYQQG-----AELKWD 352
           +FF    + Y  G     ++  WD
Sbjct: 282 DFFSGSGSSYVIGTAEETSDDDWD 305


>gi|116617385|ref|YP_817756.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096232|gb|ABJ61383.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 325

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 112/303 (36%), Gaps = 26/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    +++ ER  +    G   + ++L + + +  + 
Sbjct: 26  WEKLTQQFWLDTRIPISNDLRTWR--GNMSEQERQTMNLVFGGLTTLDTLQSQDGMAQLK 83

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWAL 163
              +N +    L    F E+VH+ ++  I  +L    +  ++F        +  KAN   
Sbjct: 84  LDATNQKEEAVLNNIQFMESVHAKSYSSIFETLNEKVEIEKIFEWADSNEFLQYKANRIN 143

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                 S+                      V  E   FY+GF   L     NKM+ +AE 
Sbjct: 144 DIYHNGSALQKKI---------------ASVFLETFLFYSGFYTPLYFLGHNKMLNVAEI 188

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          +       E Q     +L+E    E  Y HE     
Sbjct: 189 IKLIIRDESVHGTYIGYKFQIGFNKISAEERTELQSWMYDLLYELYENEEKYTHELYDD- 247

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            +G        ++++ AN+    +G EP+F       NP   M+ +       +FF    
Sbjct: 248 -LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGISTSTANHDFFSGVG 304

Query: 341 TEY 343
             Y
Sbjct: 305 NGY 307


>gi|184156148|ref|YP_001844488.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|227515317|ref|ZP_03945366.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|260662379|ref|ZP_05863274.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|183227492|dbj|BAG28008.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|227086331|gb|EEI21643.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
           14931]
 gi|260553070|gb|EEX26013.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|299783625|gb|ADJ41623.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum CECT 5716]
          Length = 316

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 118/308 (38%), Gaps = 26/308 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A    W+ T VP+ +D   W++   LTD E+ +I + +G  A  ++L +   V  + 
Sbjct: 20  WDKATAQFWLDTRVPVSNDRGDWRT---LTDSEKGVINKVVGGLALLDTLQSEEGVNVMR 76

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
                 +    +      E++H+ ++  I+++L  ++ +  +      +   +  + ++ 
Sbjct: 77  EDARTRKEVGVINDFLMMESIHAKSYGTILSTL--NDQKTIDDTFHWMNNDPRMQYKVRR 134

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
              +         K           V  V  EG+ +Y+ F   L     NK+  ++E  +
Sbjct: 135 INEIYQNGNNLEKK-----------VASVFLEGILYYSNFFTPLWYRGNNKLANLSEVIK 183

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGF 284
            ++RDES+H  +      Q   E        F+     +L +    E A+      P   
Sbjct: 184 LVIRDESVHGTYLGYKFQQAFAELTPDEQTRFRAWMDDLLADLLENEFAFTEVVYAPIQM 243

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFETRV 340
           V       +Q++++ AN+  + +G   +F +      NP   M+ +       +FF    
Sbjct: 244 V----EDVKQFVRYNANKAMNNMGFAAIFNHAAIEDINPIV-MNGISTETANHDFFSQVG 298

Query: 341 TEYQQGAE 348
             Y  G  
Sbjct: 299 AGYLMGNA 306


>gi|311993225|ref|YP_004010091.1| aerobic NDP reductase, small subunit [Enterobacteria phage CC31]
 gi|284178063|gb|ADB81729.1| aerobic NDP reductase, small subunit [Enterobacteria phage CC31]
          Length = 379

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 114/328 (34%), Gaps = 38/328 (11%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++    E      +  W P EV +  D A ++    L   ++ +   NL + +  +S+  
Sbjct: 20  RHRTFEELIEKQLSFFWRPEEVNLMTDRAQFE---KLPVGQQNVFLDNLKYQSLLDSIQG 76

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
                 +   +S+P    +     F E +HS ++ +I+ +L  D  ++F+      +I  
Sbjct: 77  RAPAAVLSALISDPSLDTWNQTWTFSETIHSRSYTHIMRNLLNDPAKVFDEIVLDEAIMK 136

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFL---------------------------QDLF 190
           +A     Y   +   +          E                                 
Sbjct: 137 RAETIGHYYDDVILKTRLWENAKERYEESLGSCQQNDIEMYEGYVIDAKRELMKALYLCL 196

Query: 191 VFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
                 E + FY  FA   +  +    M G ++  ++I RDE LHL     +I Q+++  
Sbjct: 197 HVINGLEAIRFYVSFACTFNFHKNMEIMEGNSKIMKFIARDEQLHLKGTQYIIRQLQLGT 256

Query: 250 PHLWT----KEFQQKSRTMLHEATLLEIAYAHE-TMPKGFVGLNAPSCEQYMQFIANRRC 304
                    +E +Q++  +  E    E  +A       G  GL+      ++ ++   R 
Sbjct: 257 DGEEWVQIARECEQEAVDIFMEINRQEKEWAVHLWRDGGVPGLSVKILHDFIDYLTVSRM 316

Query: 305 HQIGLE-PLFKY-TENPFPWMSEVIDLK 330
              GL  P+      +P PW+ E ++  
Sbjct: 317 RSCGLPCPITDAPVRHPIPWIREYLNSD 344


>gi|308490921|ref|XP_003107652.1| hypothetical protein CRE_13354 [Caenorhabditis remanei]
 gi|308250521|gb|EFO94473.1| hypothetical protein CRE_13354 [Caenorhabditis remanei]
          Length = 147

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 9/137 (6%)

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
            N +  +     Y  RDE LH +F   + + ++ +         Q++   ++ +A  +E 
Sbjct: 7   NNTISSVFRLINYFFRDEGLHRDFACLLYSMLQNKL-------TQERIFEIIKDAVCIEQ 59

Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
            +  E +P   +G+N     QY++F+A+    ++G + L+   +NPF +M E I +  + 
Sbjct: 60  EFLTEALPVDMIGMNCRLMSQYIEFVADHLLAELGCDKLYNV-KNPFDFM-ENISIDGKT 117

Query: 334 NFFETRVTEYQQGAELK 350
           NFFE RV+EYQ+   + 
Sbjct: 118 NFFEKRVSEYQRPGVMS 134


>gi|302190764|ref|ZP_07267018.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           iners AB-1]
 gi|309804064|ref|ZP_07698145.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 11V1-d]
 gi|309804878|ref|ZP_07698940.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 09V1-c]
 gi|309807870|ref|ZP_07701802.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 01V1-a]
 gi|309809732|ref|ZP_07703586.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners SPIN 2503V10-D]
 gi|312871305|ref|ZP_07731403.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 3008A-a]
 gi|312872703|ref|ZP_07732768.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2062A-h1]
 gi|312873302|ref|ZP_07733357.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2052A-d]
 gi|312874885|ref|ZP_07734904.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2053A-b]
 gi|315654122|ref|ZP_07907038.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           iners ATCC 55195]
 gi|325912248|ref|ZP_08174645.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners UPII 143-D]
 gi|325913678|ref|ZP_08176040.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners UPII 60-B]
 gi|329919824|ref|ZP_08276775.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners SPIN 1401G]
 gi|308163832|gb|EFO66098.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 11V1-d]
 gi|308165817|gb|EFO68038.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 09V1-c]
 gi|308168972|gb|EFO71058.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 01V1-a]
 gi|308169911|gb|EFO71950.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners SPIN 2503V10-D]
 gi|311089630|gb|EFQ48055.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2053A-b]
 gi|311091182|gb|EFQ49571.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2052A-d]
 gi|311091745|gb|EFQ50124.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311093319|gb|EFQ51665.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LEAF 3008A-a]
 gi|315488818|gb|EFU78464.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           iners ATCC 55195]
 gi|325475907|gb|EGC79076.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners UPII 143-D]
 gi|325477037|gb|EGC80187.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners UPII 60-B]
 gi|328937171|gb|EGG33599.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners SPIN 1401G]
          Length = 337

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 114/322 (35%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P ++P+ +DL  W S   L+ D + +I R     
Sbjct: 28  NWNKIDDDKDLEVWN---RVTQNFWLPEKIPVSNDLPSWNS---LSKDWQQLITRTFTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A+   +A  ++      +      AF  AVH+ ++  I ++L   +   E  N
Sbjct: 82  TLLDTIQASIGDVAQIKNAQTDHEQAIYANFAFMVAVHARSYGTIFSTLCNSDQIDEAHN 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 ++ A+A   + Y                         V   +  G   Y GF  
Sbjct: 142 WVINNEALQARAKALIPYYTGND---------------PLKSKVAAAMMPGFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   NK+   A+  + I+RD+ +H  +      Q   +       E +     +L++
Sbjct: 187 PFYLSSRNKLPNTADIIRLILRDKVIHNYYSGYKYQQKLAKLAPQRQAEMKDFVFALLYK 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 247 LIDLEKAYLRELYKGFDI---AEDAIRFSIYNAGKFLQNLGYDSPFTEAETHIAPEVLAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|306827912|ref|ZP_07461179.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes ATCC 10782]
 gi|304429831|gb|EFM32873.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
           pyogenes ATCC 10782]
          Length = 337

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 108/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N L   K    W        N W+P +VP+ +DL  W+S   L +D + +I R     
Sbjct: 28  NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF   +H+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y                         V   +  G   Y GF  
Sbjct: 142 WVVSTQSLQDRARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    KM   ++  + I+RD+ +H  +      Q           + +     +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAKMKAFVFDLLYE 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYDSPFTDEETRVSPEVFAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325


>gi|227431268|ref|ZP_03913322.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227353030|gb|EEJ43202.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 327

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 112/303 (36%), Gaps = 26/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    +++ ER  +    G   + ++L + + +  + 
Sbjct: 28  WEKLTQQFWLDTRIPISNDLRTWR--GNMSEQERQTMNLVFGGLTTLDTLQSQDGMAQLK 85

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWAL 163
              +N +    L    F E+VH+ ++  I  +L    +  ++F        +  KAN   
Sbjct: 86  LDATNQKEEAVLNNIQFMESVHAKSYSSIFETLNEKVEIEKIFEWADSNEFLQYKANRIN 145

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                 S+                      V  E   FY+GF   L     NKM+ +AE 
Sbjct: 146 DIYHNGSALQKKI---------------ASVFLETFLFYSGFYTPLYFLGHNKMLNVAEI 190

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          +       E Q     +L+E    E  Y HE     
Sbjct: 191 IKLIIRDESVHGTYIGYKFQIGFNKISAEERTELQSWMYDLLYELYENEEKYTHELYDD- 249

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            +G        ++++ AN+    +G EP+F       NP   M+ +       +FF    
Sbjct: 250 -LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGISTSTANHDFFSGVG 306

Query: 341 TEY 343
             Y
Sbjct: 307 NGY 309


>gi|308178758|ref|YP_003918164.1| ribonucleoside-diphosphate reductase subunit beta [Arthrobacter
           arilaitensis Re117]
 gi|307746221|emb|CBT77193.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter
           arilaitensis Re117]
          Length = 341

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 121/354 (34%), Gaps = 49/354 (13%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
               R+    + +     + N+++  K    W        N W+P +VP+ +DL  W+  
Sbjct: 23  NPAARI----RPI-----NWNRVVDDKDLEVWN---RLTANFWLPEKVPLSNDLPAWE-- 68

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             LT +ER +  R        +++ A    +   +              AF +AVH+ ++
Sbjct: 69  -KLTQEERTLTMRVFTGLTMLDTVQATVGEICQIQDSQTEHEEAVYTNIAFMQAVHARSY 127

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
             + ++L     E+ + YR   +         +                          V
Sbjct: 128 SSVFSTLTSTP-EIDSAYRWAIANDMLQERCKKVLTHYYGDD------------PLKRKV 174

Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
              +   +  Y GF   L       +   A+  + I+RD+++H  +      +       
Sbjct: 175 SSTLLSSLLLYAGFYLPLHFSVHATLTNTADMIRLILRDKAVHGYYSGYKYQRGLETQSP 234

Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
              +  ++ +  +L E   LE+ Y+ E      +GL       ++++ AN+    +G   
Sbjct: 235 ATQENMREFTYALLEELYELELQYSGELYE--PLGL-MDDVAVFVRYNANKALMNLGYPA 291

Query: 312 LFKYTE---NPFPWMSEVI-----DLKKEKNFFETRVTEYQQG-----AELKWD 352
            F   E   NP     E++        +  +FF    + Y  G     ++  WD
Sbjct: 292 RFTPEETNVNP-----EILAALAPGADENHDFFSGSGSSYIIGKAEDTSDDDWD 340


>gi|194246584|ref|YP_002004223.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Phytoplasma mali]
 gi|193806941|emb|CAP18373.1| Ribonucleoside-diphosphate reductase, beta chain [Candidatus
           Phytoplasma mali]
          Length = 348

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 118/327 (36%), Gaps = 18/327 (5%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           ++ NQ    +  +    Y    +  W P ++ +Q DL  WK  +    +        L F
Sbjct: 11  ANWNQ---FEDPYTHFFYEQNLSQFWRPEDISLQGDLQTWKDLSKFEKNVYSKNLLILTF 67

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146
             + +      I+ + ++   + +        A E AVH+ ++  I  +L   +   +LF
Sbjct: 68  LDTYQGDSGMFIISSSFKKEEHQKKATLNFMGAMENAVHAKSYSNIFMTLLNSKEIDDLF 127

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD------QEFLQDLFVFYVVFEGMW 200
                   +       +   + L    F     D +      +++     V  V  E   
Sbjct: 128 VWGGNQKYLQNIIGKIIDVYEDLEKKIFQRKYNDENITDLIFKKYQWKAMVTSVFLETWL 187

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
           FY+GF   L      K++   E    I+RDES+H  +   +   I      L   E  + 
Sbjct: 188 FYSGFYYPLFFYSQGKLMQSGEIINLIIRDESVHGVYIARLALNIYNSFDKLIKDELSKW 247

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319
              +L      +IA       + ++        +++++ AN+    +G  P F+  E NP
Sbjct: 248 MYDLLKYFYQEQIALVKSVYNEHYL---INDVNKFVRYNANKALMNLGFNPYFEKEEVNP 304

Query: 320 FPWMSEVIDLKKEK-NFFETRVTEYQQ 345
              +   ++ + +  + F  +   YQ+
Sbjct: 305 V--ILNGLNTETKTMDNFSMKGNGYQK 329


>gi|323342959|ref|ZP_08083190.1| ribonucleotide-diphosphate reductase subunit beta [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463023|gb|EFY08218.1| ribonucleotide-diphosphate reductase subunit beta [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 358

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 123/316 (38%), Gaps = 23/316 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y    +  W P ++ +Q DL LW S   L++D +L   RNL      ++   +  +  +
Sbjct: 31  FYEQNLSQFWRPEDISLQPDLNLWAS---LSEDVKLAYGRNLLVLTFLDTYQGDIGMPVV 87

Query: 105 YRHLSN--PECRQYLLRQA-FEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159
            R + +   + +  L   A  E AVH+ ++  I  +   +E   +L+    +  ++    
Sbjct: 88  SRSIDHKYHQRKSVLNFMAAMENAVHAKSYSNIFMTYMKNEEIDDLYRWGEQNKNMQNIL 147

Query: 160 NWALQYTQTLSSPSFTTGTKD-----ADQEF---LQDLFVFYVVFEGMWFYTGFAQILSL 211
              + Y + L   ++     D      D EF        V  V  E   FY+GF   L  
Sbjct: 148 ALIIGYYENLDRLTYRKQYADLGEPVDDFEFDVAQWKAMVASVFLESCLFYSGFYYPLYF 207

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
               K++   E    I+RDES+H  +  ++  ++  +          +   T L      
Sbjct: 208 YGQGKLMQAGEIINLILRDESIHGLYIGNLAMELYRKFDAETQASLYEWLTTYLDAIYEE 267

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK 330
           E+           +   +   + ++++ AN+    +G +  ++Y E NP   +   ++ +
Sbjct: 268 EVELIEAIYDPVEL---SHDVKIFVRYNANKAMMNLGFDAYYEYEEVNPV--VLNGLNTE 322

Query: 331 KEK-NFFETRVTEYQQ 345
            +  + F  +   YQ+
Sbjct: 323 TKTMDNFSMKGNGYQK 338


>gi|203288309|ref|YP_002223359.1| ribonucleoside-diphosphate reductase, beta subunit [Borrelia
           recurrentis A1]
 gi|203288575|ref|YP_002223482.1| ribonucleoside-diphosphate reductase beta subunit [Borrelia
           duttonii Ly]
 gi|201084282|gb|ACH93870.1| ribonucleoside-diphosphate reductase beta subunit [Borrelia
           duttonii Ly]
 gi|201085529|gb|ACH95102.1| ribonucleoside-diphosphate reductase, beta subunit [Borrelia
           recurrentis A1]
          Length = 321

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 65/325 (20%), Positives = 123/325 (37%), Gaps = 26/325 (8%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
               + N+L    Y      +       W+  E+P+ DD  +W +   L+ DER + ++ 
Sbjct: 5   REAINWNRLNN-GYTKM--FWDQNIRQFWVDEEIPISDDKLVWNT---LSVDERDVYEKV 58

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEG 143
           LG     ++   +  +  I   + N + +  L      E +H+ ++  I +SL       
Sbjct: 59  LGGLTLLDTEQGSVGMPRIALAIDNLDYKPILGFMGAMEHMHAKSYSSIFSSLSNIDRID 118

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
            +F+  +   +   K    L     +            D+  L       V  E   FY+
Sbjct: 119 YIFDWVKTYRNYQEKLELILGKYNNI-----------HDRMSLYQALCTSVFLETFLFYS 167

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF   L L    KMV   E    I+RDES+H  F   +  +   +      +   ++   
Sbjct: 168 GFFYPLYLAGQGKMVNSGEIINLILRDESVHGVFVGLLAQEEFDKMTMKEQELAYKEMLL 227

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
           +L +   LE  Y  E      VGL +   + ++++ A++    +G +  F   +   NP 
Sbjct: 228 ILEKLYSLEREYTKELYSC--VGLESA-VDVFVRYNADKALMNLGFDTKFNIKDTDVNPL 284

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQ 345
             ++ +    K  +FF T+   Y +
Sbjct: 285 V-LNGLRTDTKTHDFFSTKGNGYIK 308


>gi|325171172|ref|YP_004251147.1| ribonucleoside diphosphate reductase, beta chain [Vibrio phage
           ICP1]
 gi|323512567|gb|ADX88022.1| ribonucleoside diphosphate reductase, beta chain [Vibrio phage
           ICP1]
 gi|323513935|gb|ADX89384.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2001_A]
 gi|323514163|gb|ADX89611.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2004_A]
          Length = 450

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 64/302 (21%), Positives = 130/302 (43%), Gaps = 13/302 (4%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           Y   ++ +    +  W   E+ +  D   ++S +  T D   ++ + L +   ++SL + 
Sbjct: 37  YPELFKLFKLMKSLDWSEDEIRLHQDRMDFESVDQSTYD---VMIKTLSWQYEADSLASR 93

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
           +IV      ++N +  Q +LR +  EA+HS T+  II     +  ++F        +T +
Sbjct: 94  SIVTLFAPFITNSDLSQMMLRWSDNEALHSTTYSEIIRQCLKNPDDIFEEITSNKDVTER 153

Query: 159 ANWALQYTQTLS------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
           +    +    L       + S  + ++   +E +    V     E M F   FA   +L 
Sbjct: 154 SYKIAEAFSKLKTLGARYTLSKESVSEKEIREVILKTIVSLYCLEQMEFMASFACTFALA 213

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-QQKSRTMLHEATLL 271
                +G+A   Q IM DE++H      +IN +  +   L T E  +   + ++      
Sbjct: 214 EREIFLGVASLVQKIMIDETIHTRMDEAIINILLGDEVWLKTFEDIKPDIKEIVDSVYKQ 273

Query: 272 EIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID 328
           E++++     +G   VGLN    ++++Q+ +     ++G+E  F+    NP PWM   +D
Sbjct: 274 ELSWSEYIFSEGRSIVGLNTSLLKEWVQYKSQVVYKKLGIEQPFEDVINNPLPWMENWLD 333

Query: 329 LK 330
           + 
Sbjct: 334 ID 335


>gi|197294249|ref|YP_001798790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Phytoplasma australiense]
 gi|171853576|emb|CAM11447.1| Ribonucleotide reductase, beta subunit [Candidatus Phytoplasma
           australiense]
          Length = 344

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 125/329 (37%), Gaps = 21/329 (6%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           ++ NQL   +Y      Y    +  W P ++ +Q DLA W     L+D+E+    RNL  
Sbjct: 12  ANWNQLED-EYTHF--FYEQNLSQFWRPEDISLQGDLAAWNH---LSDEEKTTYTRNLLV 65

Query: 89  FASSESLVAN--NIVLAIYRHLSNPECRQYLLRQ-AFEEAVHSHTFQYIITSLGLDE--G 143
               ++   +    V+A     +  + +  L    A E AVH+ ++  I TS   +E   
Sbjct: 66  LTFLDTYQGDLGIPVIANSMDENKHQKKATLNFMGAMENAVHAKSYSNIFTSYLSNEDIN 125

Query: 144 ELFNMYREVPSITAKANWALQYTQTLS------SPSFTTGTKDADQEFLQDLFVFYVVFE 197
           +LF    +  ++        +  + L           +  ++   Q+         V  E
Sbjct: 126 QLFVWGEKQVNLQNIMKIIFRVYEDLEYNIYLKKYQLSEFSELQYQKNQWKAMAISVFLE 185

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
              FY+GF   L      K++   E    I+RDES+H  +   +  ++         KE 
Sbjct: 186 TWLFYSGFYYPLYFYGQGKLMQAGEIINLIIRDESIHGVYIGRLATELYHLFDDDTKKEL 245

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +      +      ++    E   K  +       ++++++ AN+    +G +  F   E
Sbjct: 246 KTWLDATMKTLYKEQMELVKEVYSK--LSYLEEDVQKFVRYNANKALMNLGFDAFFP-EE 302

Query: 318 NPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345
           N  P +   ++ + +  + F  +   YQ+
Sbjct: 303 NVNPVVLNGLNTETKTMDNFSMKGNGYQK 331


>gi|259500785|ref|ZP_05743687.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM
           13335]
 gi|259167479|gb|EEW51974.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM
           13335]
          Length = 339

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 114/322 (35%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P ++P+ +DL  W S   L+ D + +I R     
Sbjct: 30  NWNKIDDDKDLEVWN---RVTQNFWLPEKIPVSNDLPSWNS---LSKDWQQLITRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A+   +A  ++      +      AF  AVH+ ++  I ++L   +   E  N
Sbjct: 84  TLLDTIQASIGDVAQIKNAQTDHEQAIYANFAFMVAVHARSYGTIFSTLCNSDQIDEAHN 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 ++ A+A   + Y                         V   +  G   Y GF  
Sbjct: 144 WVINNEALQARAKALIPYYTGND---------------PLKSKVAAAMMPGFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   NK+   A+  + I+RD+ +H  +      Q   +       E +     +L++
Sbjct: 189 PFYLSSRNKLPNTADIIRLILRDKVIHNYYSGYKYQQKLAKLAPQRQAEMKDFVFALLYK 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE AY  E      +   A    ++  + A +    +G +  F   E    P +   
Sbjct: 249 LIDLEKAYLRELYKGFDI---AEDAIRFSIYNAGKFLQNLGYDSPFTEAETHIAPEVLAQ 305

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 306 LSARADENHDFFSGNGSSYVMG 327


>gi|323512793|gb|ADX88247.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2006_D]
 gi|323513021|gb|ADX88474.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2006_C]
 gi|323513246|gb|ADX88698.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2006_B]
 gi|323513473|gb|ADX88924.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2006_A]
 gi|323513704|gb|ADX89154.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
           ICP1_2005_A]
          Length = 450

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 64/302 (21%), Positives = 130/302 (43%), Gaps = 13/302 (4%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           Y   ++ +    +  W   E+ +  D   ++S +  T D   ++ + L +   ++SL + 
Sbjct: 37  YPELFKLFKLMKSLDWSEDEIRLHQDRMDFESVDQSTYD---VMIKTLSWQYEADSLASR 93

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
           +IV      ++N +  Q +LR +  EA+HS T+  II     +  ++F        +T +
Sbjct: 94  SIVTLFAPFITNSDLSQMMLRWSDNEALHSTTYSEIIRQCLKNPDDIFEEITSNKDVTER 153

Query: 159 ANWALQYTQTLS------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
           +    +    L       + S  + ++   +E +    V     E M F   FA   +L 
Sbjct: 154 SYKIAEAFSKLKTLGARYTLSKESVSEKEIREVILKTIVSLYCLEQMEFMASFACTFALA 213

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-QQKSRTMLHEATLL 271
                +G+A   Q IM DE++H      +IN +  +   L T E  +   + ++      
Sbjct: 214 EREIFLGVASLVQKIMIDETIHTRMDEAIINILLGDEVWLKTFEDIKPDIKEIVDSVYKQ 273

Query: 272 EIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID 328
           E++++     +G   VGLN    ++++Q+ +     ++G+E  F+    NP PWM   +D
Sbjct: 274 ELSWSEYIFSEGRSIVGLNTSLLKEWVQYKSQVVYKKLGIEQPFEDVINNPLPWMENWLD 333

Query: 329 LK 330
           + 
Sbjct: 334 ID 335


>gi|326692188|ref|ZP_08229193.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
           argentinum KCTC 3773]
          Length = 325

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 26/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+    ++  E+  +    G   + ++L + + +  + 
Sbjct: 27  WEKLTQQFWLDTRIPISNDLRHWR--GNMSPQEQKTMNLVFGGLTTLDTLQSQDGLAQLK 84

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWAL 163
               N +    L    F E++H+ ++  I  +L        +F+       +  KAN   
Sbjct: 85  FDSLNQKEEAVLNNIQFMESIHAKSYSSIFETLNEKSEIEAIFDWADNNEFLQYKANRIN 144

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              QT +S                      V  E   FY+GF   L     N+M+ +AE 
Sbjct: 145 DIYQTGTSLQKKI---------------ASVFLETFLFYSGFYTPLYFLGHNRMLNVAEI 189

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          +       E Q     +L++    E  Y HE     
Sbjct: 190 IKLIIRDESVHGTYIGYKFQIGFNQLSEDEQAELQAWMYDLLYDLYENEEKYTHELYDD- 248

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            +G        ++++ AN+    +G EP+F       NP   M+ +       +FF    
Sbjct: 249 -LGW-YEQVMTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGLSTSTANHDFFSGVG 305

Query: 341 TEY 343
             Y
Sbjct: 306 NGY 308


>gi|12045084|ref|NP_072895.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           genitalium G37]
 gi|255660230|ref|ZP_05405639.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           genitalium G37]
 gi|1350602|sp|P47471|RIR2_MYCGE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|3844832|gb|AAC71450.1| ribonucleoside-diphosphate reductase, beta chain [Mycoplasma
           genitalium G37]
 gi|166078981|gb|ABY79599.1| ribonucleoside-diphosphate reductase, beta chain [synthetic
           Mycoplasma genitalium JCVI-1.0]
          Length = 340

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 103/316 (32%), Gaps = 28/316 (8%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +     N W+P ++P+ +D+  WK    L+ D + +I +        +++ A    + 
Sbjct: 42  EVWNRIVQNFWLPEKIPVSNDIPSWK---KLSKDWQDLITKTFTGLTLLDTIQATIGDIC 98

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANW 161
              H      +      AF   VH+ ++  I ++L   E             S+  +A  
Sbjct: 99  QIDHALTDHEQVIYANFAFMVGVHARSYGTIFSTLCTSEQINAAHEWVVNTESLQKRAKA 158

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            + Y                         V   +  G   Y GF     L    ++   +
Sbjct: 159 LIPYYTGND---------------PLKSKVAAALMPGFLLYGGFYLPFYLSSRKQLPNTS 203

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RD+ +H  +      +   + P    KE +     +++    LE  Y  E   
Sbjct: 204 DIIRLILRDKVIHNYYSGYKYQRKLEKLPLAKQKEMKAFVFELMYRLIELEKDYLKELYE 263

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFET 338
               G+   + + +  + A +    +G +  F   E       +        +  +FF  
Sbjct: 264 G--FGIVDDAIK-FSVYNAGKFLQNLGYDSPFTAAETRIKPEIFAQLSARADENHDFFSG 320

Query: 339 RVTEYQQGA--ELKWD 352
             + Y  G   E   D
Sbjct: 321 NGSSYVMGVSEETNDD 336


>gi|326536370|ref|YP_004300811.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133]
 gi|299483451|gb|ADJ19545.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133]
          Length = 382

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 61/342 (17%), Positives = 120/342 (35%), Gaps = 20/342 (5%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +  I   +   N+D        + V +   +K+    E      +  W P EV +  D A
Sbjct: 1   MQTIFN-QNEFNIDQPMFFGDDTGVARYEIVKHEKFEELTTKQLSFFWRPEEVNLTTDKA 59

Query: 67  LWKSKNGLTDDE-RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
            +           + +   NLG+    +S+      + +    S+     +++   F E 
Sbjct: 60  QFDKLWETNRGHLQTIFTDNLGYQILMDSVQGRAPAIVLASICSDVALETWIMTWTFSET 119

Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD----- 180
           +HS ++ +II +L  D  ++F+       I A+A    +    L                
Sbjct: 120 IHSRSYTHIIRNLYSDPSKIFDGVLANKEIMARATSICERYDLLHKLIILYQADKIRGVA 179

Query: 181 ------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVGIAEQYQYIMRDESL 233
                   ++ L          E + FY  F    +     K M G  +  Q+I RDE+L
Sbjct: 180 TPGQLREVKKALYLCLHAINALEAIRFYVSFISTWNFFENMKIMEGNMKIMQFIARDENL 239

Query: 234 HLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
           H      ++ Q+         +E     ++++  M  E    E A+A      G   GL 
Sbjct: 240 HHQGTRYILQQMNKGIDGTEWREIALDCKEEAEAMFLEVRAQERAWATYVYRNGHPDGLT 299

Query: 289 APSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDL 329
                +++ +        +GL  P+ +   +P PW+++ +  
Sbjct: 300 TDLVHEFIDYQLVPAMKNVGLNCPIERPKRHPLPWVNKYLMA 341


>gi|257069911|ref|YP_003156166.1| ribonucleotide-diphosphate reductase subunit beta [Brachybacterium
           faecium DSM 4810]
 gi|256560729|gb|ACU86576.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Brachybacterium faecium DSM 4810]
          Length = 341

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 108/322 (33%), Gaps = 37/322 (11%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +     N W+P +VP+ +DL  W+    L + +R +  R        +++ A    + 
Sbjct: 43  EVWNRLTANFWLPEKVPLSNDLQAWQ---RLPEQDRTLTMRVFTGLTMLDTVQATVGEIC 99

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             +              AF ++VH+ ++  + ++L         +        +  +   
Sbjct: 100 QIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLTSTPEIDSAYRWAVNNDLLQERCKK 159

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            LQ+            +                       Y GF   L       +   A
Sbjct: 160 VLQHYYGADPLKRKVSSTLLSSL---------------LLYAGFYLPLHFSVRATLTNTA 204

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RD+++H  +      +          +E ++ +  +L E   LE+ Y+ E   
Sbjct: 205 DMIRLILRDKAVHGYYSGYKYQRGLAAATADKQEEMREFTVALLEELYALELEYSGELYE 264

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI------DLKKEKNF 335
              +GL       ++++ AN+    +G    F+  E     +S  I         +  +F
Sbjct: 265 --PLGL-MDDVAGFVRYNANKALMNLGYPARFEAHETV---VSPEILAALAPGSDENHDF 318

Query: 336 FETRVTEYQQG-----AELKWD 352
           F    + Y  G     ++  WD
Sbjct: 319 FSGSGSSYVIGKAEHTSDDDWD 340


>gi|82793227|ref|XP_727957.1| ribonucleotide reductase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484058|gb|EAA19522.1| ribonucleotide reductase, putative [Plasmodium yoelii yoelii]
          Length = 373

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 104/314 (33%), Gaps = 34/314 (10%)

Query: 16  RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
           +   +D+ +L        + P+KY   W  Y    +  W   +     D      K  L 
Sbjct: 14  KAQYNDE-ILKENQFRWVMFPIKYKTFWNYYKEIESLFWTAEDHNFDKD------KPFLN 66

Query: 76  DDERLMIKRNLGFFASSES------LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
             ++  + + L  F                I   +   +  PE R +   Q   E +H+ 
Sbjct: 67  SMDKTTLSKLLELFCFYSLKDLHLRDEQAIITSKLLDIIQIPEGRAFYGFQMCMENIHNE 126

Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
            +  I  S             +        +  L+Y       ++     +A+  F   L
Sbjct: 127 VYACIFESY----------SLDSKQKKEIIDKVLKYESVFKKQNWLYNEFEANIPFYNKL 176

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY-IMRDESLHLNFGIDVINQIKIE 248
            + Y+    + F  GF+ + S  + N ++         I RDE L  +F +   N +  +
Sbjct: 177 ILLYIS--KVLFNGGFSILASYCKENNILSSFTGVHAKIQRDEYLQGDFSVMCCNHLNNK 234

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
             +       +        A  LE  +  + +   F+ +     +Q++Q++A+     + 
Sbjct: 235 LRY-------ENVLNYFKAAVELEYNFCVDMLDFDFLKITKDQVKQFLQYLADTMLLNLK 287

Query: 309 LEPLFKYTENPFPW 322
               +  ++ PF W
Sbjct: 288 YPKHYN-SKYPFAW 300


>gi|144575330|gb|AAZ53597.2| ribonucleoside-diphosphate reductase beta chain [Mycoplasma
           hyopneumoniae 7448]
          Length = 314

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 113/322 (35%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W++   L+   + ++ R     
Sbjct: 5   NWNIINDPKDLEVWT---RIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 58

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF   VH+ ++  I ++L   E   E  N
Sbjct: 59  TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 118

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   + +                         V   +  G   Y GF  
Sbjct: 119 WVINNEKLQKRARILIPFYVGED---------------PLKSKVAAALMPGFLLYGGFYL 163

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   +K+   ++  + I+RD+ +H  +      +   +       E ++ +  +L++
Sbjct: 164 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 223

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE  Y ++   +  VGL   + + +  + A +    +G +  F   E    P +   
Sbjct: 224 LIELEKDYLYDLYSE--VGLAESAIK-FSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 280

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y   
Sbjct: 281 LSARADENHDFFSGNGSSYVMA 302


>gi|330718304|ref|ZP_08312904.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
           fallax KCTC 3537]
          Length = 326

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 108/303 (35%), Gaps = 27/303 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T VP+ +DL  W+     + +E+ ++    G   + ++L + + +  + 
Sbjct: 26  WEKLTQQFWLDTRVPISNDLRNWRDT---SAEEKKVLNLVFGGLTTLDTLQSQDGMAELK 82

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWAL 163
           +   N +    L    F E+VH+ ++  I  +L        +F        +  KA    
Sbjct: 83  KDAVNQKEEAVLNNIQFMESVHAKSYSSIFETLNDKAEIEAVFEWADNDEYLQYKAQRIN 142

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
                 +                       V  E   FY+GF   L     NKM+ +AE 
Sbjct: 143 DIYHNGTPLQKKV---------------ASVFLETFLFYSGFYTPLYFVGHNKMLNVAEI 187

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+RDES+H  +          +       E Q     +L E    E  + HE     
Sbjct: 188 IKLIIRDESVHGTYIGYKFQIGFNQLSEDEQSELQSWMYDLLFELYENEEKFTHELY--D 245

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
            +G    S   ++++ AN+    +G EP+F       NP   M+ +       +FF    
Sbjct: 246 EIGWT-DSVMTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGISTSTANHDFFSGVG 303

Query: 341 TEY 343
             Y
Sbjct: 304 NGY 306


>gi|300859142|ref|YP_003784125.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686596|gb|ADK29518.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206836|gb|ADL11178.1| Ribonucleoside-diphosphate reductase subunit beta [Corynebacterium
           pseudotuberculosis C231]
 gi|302331398|gb|ADL21592.1| Ribonucleoside-diphosphate reductase beta chain 2 [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277088|gb|ADO26987.1| Ribonucleoside-diphosphate reductase beta chain 2 [Corynebacterium
           pseudotuberculosis I19]
          Length = 340

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 115/333 (34%), Gaps = 41/333 (12%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +     E +    +N W+P +VP+ +D+  W+   G+ ++ R ++ R        +++ A
Sbjct: 30  EDPKDMEVWQRLTSNFWLPEKVPLSNDIPTWR---GMGENYRTLVTRTFTGLTLLDTVQA 86

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSI 155
               ++          +      AF +AVH+ ++  + ++L       E ++     P +
Sbjct: 87  TVGEISQIPDARTEHEQAVYTNIAFMQAVHARSYSSVFSTLCSSAEIDEAYSWAVSNPLL 146

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
             +A+  + +                         V   +   +  Y GF   L L    
Sbjct: 147 QQRASSVMSHYYGDD---------------PLKRKVASTLLSSLLLYAGFYLPLWLSTRG 191

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
           +++  A+  + I+RD+++H  +      +     P     E +  + +   E   LE  Y
Sbjct: 192 QLMNTADMIRLILRDKAVHGYYSGYKYQRGLDAKP-QRKDEMEDFTYSFCDELLALEKDY 250

Query: 276 AHETMPKGFVGL-----NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL- 329
           + +        L            ++ + A++    +G  P ++        +S  I   
Sbjct: 251 SADLY-ASVDTLEEPRPTIDGVMAFVYYNADKALMNLGYAPAYELQA---AHVSPEIIAA 306

Query: 330 -----KKEKNFFETRVTEYQQG-----AELKWD 352
                 +  +FF    + Y  G      E  WD
Sbjct: 307 LTPESNETHDFFSGSGSSYIIGRAENTTESDWD 339


>gi|303232548|ref|ZP_07319234.1| ribonucleoside-diphosphate reductase, beta subunit [Atopobium
           vaginae PB189-T1-4]
 gi|302481335|gb|EFL44409.1| ribonucleoside-diphosphate reductase, beta subunit [Atopobium
           vaginae PB189-T1-4]
          Length = 351

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 107/326 (32%), Gaps = 29/326 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P  +P+ +DL  W +   L +  + +I R     
Sbjct: 42  NWNRIADDKDLEVWN---RVTQNFWLPENIPVSNDLPSWNT---LDERWQQLIIRTFTGL 95

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A+   +A  RH      +      AF  AVH+ ++  I ++L   E   E   
Sbjct: 96  TLLDTVQASVGDVAQIRHAITDIEQANYANFAFMVAVHARSYGTIFSTLCSSEQIDEAQA 155

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 ++ A+A   + Y     +                       +  G   Y GF  
Sbjct: 156 WVVHNDALQARAQALIPYYTQDDALKSKV---------------AAALMPGFLLYGGFYL 200

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +      Q             ++    +L+ 
Sbjct: 201 PFYLSARGKLPNTSDMIRLILRDKVIHNYYSGYKYQQKLKRLAADEQAAMKEFVFDLLYH 260

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE  Y  E      +   A     +  + A +    +G +  F   E    P +   
Sbjct: 261 LIDLEKTYLRELYDGFDL---ADDAIAFSLYNAGKFLQNLGYDSPFTAQETHIEPEVFAQ 317

Query: 327 ID--LKKEKNFFETRVTEYQQGAELK 350
           +     +  +FF    + Y  G   +
Sbjct: 318 LSARADENHDFFSGSGSSYVIGTAEE 343


>gi|326803224|ref|YP_004321042.1| ribonucleoside-diphosphate reductase, beta subunit [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326650868|gb|AEA01051.1| ribonucleoside-diphosphate reductase, beta subunit [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 337

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 114/333 (34%), Gaps = 34/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+++  K    W        N W+P  +P+ +DL  W     L DD + +I R     
Sbjct: 28  NWNKIVDEKDLEVWN---RVTQNFWLPENIPVSNDLPSWNE---LDDDWQQLITRTFTGL 81

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ ++   +A  ++    + +      AF   VH+ ++  I ++L   E   E   
Sbjct: 82  TLLDTVQSSIGDVAQIKNSLTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIEEAHE 141

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +  ++ A+    + +                         +   +  G   Y GF  
Sbjct: 142 WVVDNEALQARPKALIPFYTADD---------------PLKSKIAAALMPGFLLYGGFYL 186

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ +H  +          +       E +Q    +L +
Sbjct: 187 PFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEKQAEMKQFVFDLLDK 246

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE  Y H+       GL A    ++  + A +    +G E  F   E    P +   
Sbjct: 247 MIGLEKTYLHQLYDG--FGL-ADEAIRFSLYNAGKFLQNLGYESPFTKEETRIAPEVFAQ 303

Query: 327 ID--LKKEKNFFETRVTEYQQGAELK-----WD 352
           +     +  +FF    + Y  G   +     WD
Sbjct: 304 LSARADENHDFFSGSGSSYIIGTSEETLDEDWD 336


>gi|293556439|ref|ZP_06675017.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
 gi|291601403|gb|EFF31677.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
          Length = 316

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 127/311 (40%), Gaps = 28/311 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A    W+ T VP+ +DL  WK    L+D E+ ++K+ +G  A  ++L +   + A+ 
Sbjct: 20  WDKATAQFWLDTRVPVSNDLLDWK---NLSDVEKKVVKKAVGGLALLDTLQSEEGLYALK 76

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
           ++    + +  L    F E++H+ T+  I+ SL   +   E+++     P +  KA    
Sbjct: 77  KNARTQKEKAVLSDFTFMESIHAKTYGTILISLNTFKDIEEIYDWMNNDPKMQFKAEKIN 136

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  Q  +                  + V  V  EG+ +Y+ F   L     NK+  +AE 
Sbjct: 137 EVYQNGT---------------PMQVKVASVFLEGILYYSNFFIPLWYRGQNKLANLAEL 181

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + ++RDES+H  +      Q   E       EF     T L+E    E AY  E   + 
Sbjct: 182 IKLVIRDESVHGTYLGYKFRQDFEELTLEEKDEFTNWMYTFLNELLKNEFAYTEEVYSE- 240

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK----YTENPFPWMSEVIDLKKEKNFFETR 339
            +GL     + ++++ AN+    +G    F+       NP   M+ +       +FF   
Sbjct: 241 -IGL-VEDIKTFVKYNANKSLQNMGFGIYFEDALVNDVNPIV-MNGISIETANHDFFSQV 297

Query: 340 VTEYQQGAELK 350
              Y  G   +
Sbjct: 298 GAGYLMGGAEE 308


>gi|237784654|ref|YP_002905359.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757566|gb|ACR16816.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 350

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 120/352 (34%), Gaps = 56/352 (15%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N+L   +     E +     N W+P +VP+ +D++ W S   L DD R +  +     
Sbjct: 25  NWNRL---QDPKDLEVWQRLTGNFWLPEKVPLSNDISSWNS---LPDDLRQLTVKIFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    ++          +      AF ++VH+ ++  + ++L       + + 
Sbjct: 79  TLLDTVQATVGEVSQIPDGRTEHEQAVYTNIAFMQSVHARSYSSVFSTLCSTPEITDAYG 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              +   +  +A   +++                         V   +   +  Y GF  
Sbjct: 139 WATQNTVLQRRATTVMKHYYARD---------------PLKRKVAATLLSSLLLYAGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L L    K++  A+  + I+RD+++H  +      +    +P     E Q+ + +++ E
Sbjct: 184 PLWLSCRAKLMNTADMIRLILRDKAVHGYYSGYKFQRGLDAHPE-RKNELQEFTYSLVDE 242

Query: 268 ATLLEIAYAHETMPKGFVGLNA------------------PSCEQYMQFIANRRCHQIGL 309
              LE  Y+ E       G+ A                       ++ + AN+    +G 
Sbjct: 243 LLNLEKIYSGELYG----GITAPNNSHKSAESSFTSRPNFAGVMAFVYYNANKALMNLGY 298

Query: 310 EPLFKYTENPFPWMSEVIDLK----KEKNFFETRVTEYQQGA-----ELKWD 352
             L++           +  L     +  +FF      Y  G      E  WD
Sbjct: 299 PALYEDEAERTE-PDILAALTPEASETHDFFSGSGASYVIGKTEATEESDWD 349


>gi|209877300|ref|XP_002140092.1| ribonucleoside-diphosphate reductase beta subunit family protein
           [Cryptosporidium muris RN66]
 gi|209555698|gb|EEA05743.1| ribonucleoside-diphosphate reductase beta subunit family protein
           [Cryptosporidium muris RN66]
          Length = 357

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 99/324 (30%), Gaps = 33/324 (10%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
               + +L        L P+KY   W  Y       W    +    DL        +++ 
Sbjct: 11  KQKQETILLDNPFRWVLFPIKYNRLWNFYKKYEVVFWTAEVISYIKDL------GIISEV 64

Query: 78  ERLMIKRNLGF-----FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           +R  +           F S+  L +  +       +  PE R Y       E ++   F 
Sbjct: 65  DRRFVDSIELLFSSRVFISNTGLDSVLVACEFLSQIQVPEARGYFSFTICMENIYKEVFM 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-------PSFTTGTKDADQEF 185
             I  +   + E     +E     AK  + L+    ++          F     D+   F
Sbjct: 125 NYIDVIRKYKSE---NIKEYDHKEAKMRYHLKLKDIITDNQHYQRKIEFANQLLDSSVPF 181

Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
            + L ++ ++           +     +    +  + +    I RDE     F + +   
Sbjct: 182 SEKLIIYTIIKRVFSSGIHLIRQSFFNKEGPVLEQLCDALDRIRRDELFQAEFCLSIAR- 240

Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
                  + TK   +   +ML  A  +E  +         + +       Y+ F A+   
Sbjct: 241 ------SMKTKPSNEYIISMLENAITIEKGFIFSIFNLEILEIPREDIVAYLLFSADEIL 294

Query: 305 HQIGLEPLFKYTENPFPWMSEVID 328
            ++     F  + NPF   SE+I 
Sbjct: 295 VELKYPRHFNVS-NPF---SELIS 314


>gi|144227519|gb|AAZ44308.2| ribonucleoside-diphosphate reductase beta chain [Mycoplasma
           hyopneumoniae J]
          Length = 353

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 113/322 (35%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W++   L+   + ++ R     
Sbjct: 44  NWNIINDPKDLEVWT---RIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 97

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF   VH+ ++  I ++L   E   E  N
Sbjct: 98  TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 157

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   + +                         V   +  G   Y GF  
Sbjct: 158 WVINNEKLQKRARILIPFYVGED---------------PLKSKVAAALMPGFLLYGGFYL 202

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   +K+   ++  + I+RD+ +H  +      +   +       E ++ +  +L++
Sbjct: 203 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 262

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE  Y ++   +  VGL   + + +  + A +    +G +  F   E    P +   
Sbjct: 263 LIELEKDYLYDLYSE--VGLAESAIK-FSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 319

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y   
Sbjct: 320 LSARADENHDFFSGNGSSYVMA 341


>gi|54020059|ref|YP_115670.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           hyopneumoniae 232]
 gi|53987232|gb|AAV27433.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma
           hyopneumoniae 232]
          Length = 353

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 113/322 (35%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W++   L+   + ++ R     
Sbjct: 44  NWNIINDPKDLEVWT---RIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 97

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    +A  +H      +      AF   VH+ ++  I ++L   E   E  N
Sbjct: 98  TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 157

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   + +                         V   +  G   Y GF  
Sbjct: 158 WVINNEKLQKRARILIPFYVGED---------------PLKSKVAAALMPGFLLYGGFYL 202

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   +K+   ++  + I+RD+ +H  +      +   +       E ++ +  +L++
Sbjct: 203 PFYLSARSKLPNTSDVIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 262

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE  Y ++   +  VGL   + + +  + A +    +G +  F   E    P +   
Sbjct: 263 LIELEKDYLYDLYSE--VGLAESAIK-FSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 319

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y   
Sbjct: 320 LSARADENHDFFSGNGSSYVMA 341


>gi|71893573|ref|YP_279019.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           hyopneumoniae J]
 gi|72080562|ref|YP_287620.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           hyopneumoniae 7448]
          Length = 339

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 113/322 (35%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W++   L+   + ++ R     
Sbjct: 30  NWNIINDPKDLEVWT---RIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A  +H      +      AF   VH+ ++  I ++L   E   E  N
Sbjct: 84  TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   + +                         V   +  G   Y GF  
Sbjct: 144 WVINNEKLQKRARILIPFYVGED---------------PLKSKVAAALMPGFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L   +K+   ++  + I+RD+ +H  +      +   +       E ++ +  +L++
Sbjct: 189 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE  Y ++   +  VGL   + + +  + A +    +G +  F   E    P +   
Sbjct: 249 LIELEKDYLYDLYSE--VGLAESAIK-FSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 305

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y   
Sbjct: 306 LSARADENHDFFSGNGSSYVMA 327


>gi|56694763|ref|YP_164483.1| ribonucleotide reductase subunit 2 [Cercopithecine herpesvirus 2]
 gi|52843315|gb|AAU88106.1| small subunit of ribonucleotide reductase [Cercopithecine
           herpesvirus 2]
          Length = 325

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 116/308 (37%), Gaps = 32/308 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ +E+    D        GLTD+E    +    F ++++ LV  N +  +       
Sbjct: 41  NRWLESELVFAGDEED---VGGLTDEELNFYRFLFTFLSAADDLVTEN-LGGLSGLFPQK 96

Query: 112 ECRQYLLRQAFEEAVHSHTFQYI----ITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I      + G    E        P+I  K +W     Q
Sbjct: 97  DILHYYVEQEAIEVVHSRVYSIIQLVLFRNDGQARREYVARTIHHPAIRVKVDWLEARVQ 156

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
              S                  F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 157 ACESVPEK--------------FILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 202

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K   ++   +  EA  +EI +     P     L
Sbjct: 203 SRDEAVHTTASCYIYNNYLA----GHHKPEPERVYRLFREAVEIEIGFIRSQAPADSRIL 258

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFP-WMSEVIDLKKEKNFFETRVTEY 343
           +A +    E Y++F A+R    I ++PLF     P P +   ++  +K  NFFE R T Y
Sbjct: 259 DAAALAAIENYVRFSADRLLALIRMKPLFGAPA-PAPSFPLSLMSTEKHTNFFECRSTAY 317

Query: 344 QQGAELKW 351
             GA +  
Sbjct: 318 A-GAVVND 324


>gi|45268714|dbj|BAD12266.1| p53-inducible ribonucleotide reductase small subunit 2 short form
           gamma [Homo sapiens]
          Length = 139

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 9/121 (7%)

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           +DE LH +F   +   +         K  +++ R ++ +A  +E  +  E +P G +G+N
Sbjct: 14  QDEGLHCDFACLMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMN 66

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
               +QY++F+A+R   ++G   +F   ENPF +M E I L+ + NFFE RV+EYQ+ A 
Sbjct: 67  CILMKQYIEFVADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAV 124

Query: 349 L 349
           +
Sbjct: 125 M 125


>gi|313607545|gb|EFR83848.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
           monocytogenes FSL F2-208]
          Length = 187

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 4/177 (2%)

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
            ++     +   E L    +   + EG+ FY+GFA   +L R NKM G  +   +I RDE
Sbjct: 2   DAYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQNKMTGTGKIISFINRDE 61

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
             H  F  +VI  I  ENP L T+E  + +      A  LE  ++ E + +G  G++   
Sbjct: 62  LAHSKFISEVIRAILGENPELQTEELVEYTHEAFRHAVELETEWSEEVL-QGIEGIDVEE 120

Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
              Y+++ AN+    +G+  L+  +++N   W+    D   + + +FFE R + Y++
Sbjct: 121 MVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTETKTDFFEMRNSSYKK 177


>gi|83722609|ref|YP_443887.1| ribonucleotide reductase subunit 2 [Papiine herpesvirus 2]
 gi|75905762|gb|ABA29294.1| UL40 [Papiine herpesvirus 2]
          Length = 339

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 70/308 (22%), Positives = 117/308 (37%), Gaps = 32/308 (10%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ +E+    D        GLTD+E    +    F ++++ LV  N +  +       
Sbjct: 55  NRWLESELVFAGDEED---VAGLTDEELNFYRFLFTFLSAADDLVTEN-LGGLSGLFPQK 110

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE----GELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  ++     E        P+I  K +W     Q
Sbjct: 111 DILHYYVEQEAIEVVHSRVYSIIQLVLFRNDEQARREYVARTIHHPAIRVKVDWLEARVQ 170

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
              S                  F+  ++ EG++F   FA I  +   N +    +    I
Sbjct: 171 ACESVPEK--------------FILMILIEGIFFAASFAAIAYMRTNNLLRVTCQSNDLI 216

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N     +         ++   +  EA  +EI +     P     L
Sbjct: 217 SRDEAVHTTASCYIYNNYLAGHRKPEP----ERVYRLFREAVEIEIGFIRSQAPADSRIL 272

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFP-WMSEVIDLKKEKNFFETRVTEY 343
           +A +    E Y++F A+R    I ++PLF     P P +   ++  +K  NFFE R T Y
Sbjct: 273 DAAALAAIENYVRFSADRLLALIEMKPLFGAPA-PAPSFPLNLMSTEKHTNFFERRSTAY 331

Query: 344 QQGAELKW 351
             GA +  
Sbjct: 332 A-GAVVND 338


>gi|269976951|ref|ZP_06183925.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris 28-1]
 gi|269934782|gb|EEZ91342.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris 28-1]
          Length = 333

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 118/333 (35%), Gaps = 35/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W       +N W+P +VP+ +DL  W   N L+D ER +  R     
Sbjct: 25  NWNNITDEKDREIWN---RLTSNFWLPEKVPLSNDLPSW---NQLSDMERSVTMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    ++  +       +      AF +AVH+ ++  I ++L         + 
Sbjct: 79  TMLDTVQATVGEISQIQDGITEHEQAIYANIAFMQAVHARSYSSIFSTLSNTPEIDAAYT 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   LQ+     S      +                       Y GF  
Sbjct: 139 WAVNNDLLQERAKMVLQHYYGEDSLKRKVASTLLSSL---------------LLYAGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       ++  A+  + I+RD+++H  +      +    +P     E +  +  +L +
Sbjct: 184 PLYFSARGILMNTADMIRLILRDKAVHGYYSGYKYQRGLDLHPE-RVAEMEDFTFQLLDD 242

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSE 325
              LE+ Y+ E       GL       ++++ AN+    +G    F  + TE     ++ 
Sbjct: 243 LYELELKYSGEIYE--PTGL-MDDVAVFVRYNANKAMMNLGYPTRFAPEETEVKADILAA 299

Query: 326 VIDLKKEK-NFFETRVTEYQQGAE-----LKWD 352
           +    +E  +FF    + Y  G+        WD
Sbjct: 300 LAPGSEETHDFFSGSGSSYVIGSAESTSDEDWD 332


>gi|51518029|ref|YP_067954.1| BaRF1 [Macacine herpesvirus 4]
 gi|18025480|gb|AAK95424.1| BaRF1 [Macacine herpesvirus 4]
          Length = 302

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 109/298 (36%), Gaps = 26/298 (8%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
            N W    + +  D    K    L + +    K    F A +E LV  N +  +     +
Sbjct: 22  RNRWFAAHIVLTKDCGCLK---LLNERDLEFYKFLFTFLAMAEKLVNFN-IDELVTSFES 77

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
            +   Y   Q   E VH  T+  I+  L   +    N Y E           + + +   
Sbjct: 78  HDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADGALQAKISWLRDKV 137

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
           + + T   K           + +++ EG++F + F  I  L     M G+     YI RD
Sbjct: 138 AAAVTLPEK----------ILVFLLIEGIFFISSFYSIALLRVRGLMPGVCLANNYISRD 187

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E LH      + N +         +  Q+    +   A  +E A+  E    G   ++  
Sbjct: 188 ELLHTRAASLLYNSMTAPADRPGAQWIQE----LFRTAVEVETAFI-EARGWGVTLVDVQ 242

Query: 291 SCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           +  Q+++  A+R    IGL PL+      + P  +M+ +    K+ NFFE    +Y  
Sbjct: 243 AIRQFLEATADRILGDIGLPPLYGTPPPRDCPLTYMTSI----KQTNFFEQESADYTM 296


>gi|227876139|ref|ZP_03994257.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC
           35243]
 gi|227843295|gb|EEJ53486.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC
           35243]
          Length = 333

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 118/333 (35%), Gaps = 35/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W       +N W+P +VP+ +DL  W   N L+D ER +  R     
Sbjct: 25  NWNNITDEKDREIWN---RLTSNFWLPEKVPLSNDLPSW---NQLSDMERNVTMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    ++  +       +      AF +AVH+ ++  I ++L         + 
Sbjct: 79  TMLDTVQATVGEISQIQDGITEHEQAIYANIAFMQAVHARSYSSIFSTLSNTPEIDAAYT 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   LQ+     S      +                       Y GF  
Sbjct: 139 WAVNNDLLQERAKMVLQHYYGEDSLKRKVASTLLSSL---------------LLYAGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       ++  A+  + I+RD+++H  +      +    +P     E +  +  +L +
Sbjct: 184 PLYFSARGILMNTADMIRLILRDKAVHGYYSGYKYQRGLDLHPE-RAAEMEDFTFQLLDD 242

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSE 325
              LE+ Y+ E       GL       ++++ AN+    +G    F  + TE     ++ 
Sbjct: 243 LYELELKYSGEIYE--PTGL-MDDVAVFVRYNANKAMMNLGYPTRFAPEETEVKADILAA 299

Query: 326 VIDLKKEK-NFFETRVTEYQQGAE-----LKWD 352
           +    +E  +FF    + Y  G+        WD
Sbjct: 300 LAPGSEETHDFFSGSGSSYVIGSAESTSDEDWD 332


>gi|9628063|ref|NP_042657.1| ribonucleotide reductase, small subunit [Equid herpesvirus 2]
 gi|82013696|sp|Q66662|RIR2_EHV2 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|695233|gb|AAC13848.1| ribonucleotide reductase, small subunit [Equid herpesvirus 2]
          Length = 305

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 109/299 (36%), Gaps = 26/299 (8%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
            N W P+++ +  D+A  +S   L   +    K    F A +E LV  N + A+     +
Sbjct: 25  QNRWFPSQISLTSDVACLQS---LNPRDLEFYKFLFSFLAMAEKLVNFN-IQALVADFHS 80

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
            +   Y   Q   E +H   +  I+             ++       K    +   + L+
Sbjct: 81  HDLEHYYTEQEAMENIHGKVYANILNMF----------FKNNVGEMQKYAREIVGDEALA 130

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
           +       + ++ +   +  + +++ EG++F + F  I +L     M G+     YI RD
Sbjct: 131 AKLHWLHGRVSEAKTRAEKVLVFLLIEGIFFISSFYSIATLRVRGLMNGVCMANDYISRD 190

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E +H      + N +  +      K   +    +  EA  +E  +      +G   +N  
Sbjct: 191 EWVHTRAAALLFNTLVPDE----EKPSPEWIGALFREAVEVEYNFIL-AKGRGVSHVNVA 245

Query: 291 SCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
              ++++  A+R    I + P++        P           K  NFFE   ++Y   
Sbjct: 246 DINRFLEATADRILKSINVGPVYGTQPPPNCPL----VYTGCLKNVNFFERESSDYTTA 300


>gi|306819415|ref|ZP_07453122.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35239]
 gi|307701705|ref|ZP_07638721.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris FB024-16]
 gi|304647707|gb|EFM45025.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
           mulieris ATCC 35239]
 gi|307613208|gb|EFN92461.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
           mulieris FB024-16]
          Length = 333

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 118/333 (35%), Gaps = 35/333 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W       +N W+P +VP+ +DL  W   N L+D ER +  R     
Sbjct: 25  NWNNITDEKDREIWN---RLTSNFWLPEKVPLSNDLPSW---NQLSDMERSVTMRVFTGL 78

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ A    ++  +       +      AF +AVH+ ++  I ++L         + 
Sbjct: 79  TMLDTVQATVGEISQIQDGITEHEQAIYANIAFMQAVHARSYSSIFSTLSNTPEIDAAYT 138

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  +  +A   LQ+     S      +                       Y GF  
Sbjct: 139 WAVNNDLLQERAKMVLQHYYGEDSLKRKVASTLLSSL---------------LLYAGFYL 183

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L       ++  A+  + I+RD+++H  +      +    +P     E +  +  +L +
Sbjct: 184 PLYFSARGILMNTADMIRLILRDKAVHGYYSGYKYQRGLDLHPE-RAAEMEDFTFQLLDD 242

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSE 325
              LE+ Y+ E       GL       ++++ AN+    +G    F  + TE     ++ 
Sbjct: 243 LYELELKYSGEIYE--PTGL-MDDVAVFVRYNANKAMMNLGYPTRFAPEETEVKADILAA 299

Query: 326 VIDLKKEK-NFFETRVTEYQQGAE-----LKWD 352
           +    +E  +FF    + Y  G+        WD
Sbjct: 300 LAPGSEETHDFFSGSGSSYVIGSAESTSDEDWD 332


>gi|301629349|ref|XP_002943805.1| PREDICTED: ribonucleoside-diphosphate reductase subunit beta-like,
           partial [Xenopus (Silurana) tropicalis]
          Length = 120

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/86 (62%), Positives = 70/86 (81%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
           ++RVN  DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M  D+ALWK  NG
Sbjct: 35  QRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 94

Query: 74  LTDDERLMIKRNLGFFASSESLVANN 99
           LT+DER +++RNLGFF +++SL ANN
Sbjct: 95  LTEDERRIVRRNLGFFTTADSLAANN 120


>gi|289677031|ref|ZP_06497921.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae pv. syringae FF5]
          Length = 151

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/88 (55%), Positives = 63/88 (71%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           +    GL+ ++    RV VD+K M+N R+D+NQL+P KY WAW+KYL  C NHWMP EV 
Sbjct: 64  LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGF 88
           M  D+ALWK+  GLTDDER ++ RNLGF
Sbjct: 124 MTADIALWKNPEGLTDDERRIVMRNLGF 151


>gi|269864962|ref|XP_002651756.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|269866721|ref|XP_002652369.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220062645|gb|EED41686.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063933|gb|EED42300.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 135

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 11/130 (8%)

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           M G+    + I RDE LH +F   +   I  +               ++ EA  +E  + 
Sbjct: 1   MPGLTFSNELISRDEGLHTDFACLLHKYINNK---------CTVIEDIVREAVAIEQEFL 51

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336
            E++P   +G+N     QY++F+A+R    +G + ++  + NPF +M E I L+ + NFF
Sbjct: 52  SESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFF 109

Query: 337 ETRVTEYQQG 346
           E R   YQ+G
Sbjct: 110 ERREANYQKG 119


>gi|82503214|ref|YP_401656.1| BaRF1 [Human herpesvirus 4]
 gi|139424488|ref|YP_001129453.1| BaRF1 [Human herpesvirus 4 type 2]
 gi|238055355|sp|P0CAP6|RIR2_EBVB9 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase 38 kDa subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|238055356|sp|P0CAP7|RIR2_EBVA8 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase 38 kDa subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|238055357|sp|P0C701|RIR2_EBVG RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase 38 kDa subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|1334857|emb|CAA24843.1| unnamed protein product [Human herpesvirus 4]
 gi|23893602|emb|CAD53406.1| ribonucleoside-diphosphate reductase small chain [Human herpesvirus
           4]
 gi|64173256|gb|AAY41106.1| unknown [Human herpesvirus 4]
 gi|82703964|gb|ABB89233.1| BaRF1 [Human herpesvirus 4]
          Length = 302

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 111/298 (37%), Gaps = 26/298 (8%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
            N W    + +  D    K    L + +    K    F A +E LV  N +  +     +
Sbjct: 22  RNRWFAAHIVLTKDCGCLK---LLNERDLEFYKFLFTFLAMAEKLVNFN-IDELVTSFES 77

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
            +   Y   Q   E VH  T+  I+  L   +    N Y E           + + +   
Sbjct: 78  HDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADEALQAKISWLRDKV 137

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
           + + T   K           + +++ EG++F + F  I  L     M GI     YI RD
Sbjct: 138 AAAVTLPEK----------ILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRD 187

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E LH      + N +  +         Q+    +   A  +E A+  E   +G   ++  
Sbjct: 188 ELLHTRAASLLYNSMTAKADRPRATWIQE----LFRTAVEVETAFI-EARGEGVTLVDVR 242

Query: 291 SCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           + +Q+++  A+R    IG  PL+      + P  +M+ +    K+ NFFE   ++Y  
Sbjct: 243 AIKQFLEATADRILGDIGQAPLYGTPPPKDCPLTYMTSI----KQTNFFEQESSDYTM 296


>gi|311993498|ref|YP_004010363.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj9]
 gi|295917455|gb|ADG60126.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj9]
          Length = 379

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 60/341 (17%), Positives = 123/341 (36%), Gaps = 22/341 (6%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           ++ I   + + N+D        + V +   +K+    E      +  W P EV +  D +
Sbjct: 1   MTTIFN-QAKFNIDQPMFFGPDTGVARYEIVKHQKFEELTTKQLSFFWRPEEVNLTTDKS 59

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +   + L    ++    NLG+    +S+      + +    S+     +++   F E +
Sbjct: 60  QF---DKLWAPYQIQFTDNLGYQILMDSVQGRAPAIVLASICSDVALETWIMTWTFSETI 116

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD------ 180
           HS ++ +II +L  D  ++F+       I A+A    +    L                 
Sbjct: 117 HSRSYTHIIRNLFSDPSKIFDGVLANKEIMARATSICERYDLLHKLIILYQADKIRGVAT 176

Query: 181 -----ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVGIAEQYQYIMRDESLH 234
                  ++ L          E + FY  F    +     K M G  +  Q+I RDE+LH
Sbjct: 177 PEQLREVKKALYMCLHAINALEAIRFYVSFISTWNFFENMKIMEGNMKIMQFIARDENLH 236

Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
                 ++ Q+         +    E + ++  +  E    E A+A      G   GL  
Sbjct: 237 HQGTRYILQQMNKGIDGTEWREIALECKAEAEELFIEVRNQERAWASYVYRDGCPPGLTV 296

Query: 290 PSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDL 329
                ++ +      + +GL  P+ +   +P PW+++ +  
Sbjct: 297 ELVHDFIDYQLVPAMNNVGLTCPVQRPKRHPLPWVNKYLMA 337


>gi|297724673|ref|NP_001174700.1| Os06g0257450 [Oryza sativa Japonica Group]
 gi|255676900|dbj|BAH93428.1| Os06g0257450 [Oryza sativa Japonica Group]
          Length = 162

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           +N     QY++F+A+R    +G + ++    NPF WM E+I L+ + NFFE RV +YQ+ 
Sbjct: 83  MNGDLMSQYIEFVADRLLMALGCKKMYNVA-NPFDWM-ELISLQGKTNFFEKRVGDYQKA 140

Query: 347 AELK 350
           + + 
Sbjct: 141 SVMS 144


>gi|294669615|ref|ZP_06734682.1| hypothetical protein NEIELOOT_01516 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308528|gb|EFE49771.1| hypothetical protein NEIELOOT_01516 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 296

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 106/284 (37%), Gaps = 26/284 (9%)

Query: 13  GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
            + + +   + M   +  +V +    KY    +      +  W P E+ +  D   +   
Sbjct: 7   PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
             L + E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++
Sbjct: 64  ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
            +II ++  D   +F+   +   I A+A     Y   L   +                  
Sbjct: 124 THIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLV 183

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           T   ++  ++    L    V+ E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 184 TVSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242

Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIA 274
           L     ++N ++             E Q +   +  +A   E  
Sbjct: 243 LTSTQHMLNLMRAGVDDPEMAEIAVELQDECFKLFKKAAEQEKN 286


>gi|13508061|ref|NP_110010.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           pneumoniae M129]
 gi|2500211|sp|P75461|RIR2_MYCPN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|1674208|gb|AAB96162.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma
           pneumoniae M129]
 gi|301633274|gb|ADK86828.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
           pneumoniae FH]
          Length = 339

 Score =  109 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 104/308 (33%), Gaps = 26/308 (8%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
           E +     N W+P ++P+ +D+  WK    L+ + + +I +        +++ A    + 
Sbjct: 41  EVWNRITQNFWLPEKIPVSNDIPSWKQ---LSKEWQDLITKTFTGLTLLDTIQATIGDIK 97

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
              +      +      AF   VH+ ++  I ++L   E   E      +  S+  +A  
Sbjct: 98  QIDYALTDHEQVIYANFAFMVGVHARSYGTIFSTLCTSEQITEAHEWVVKTESLQKRAKA 157

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            + Y                         V   +  G   Y GF     L    ++   +
Sbjct: 158 LIPYYTGKD---------------PLKSKVAAALMPGFLLYGGFYLPFYLSSRKQLPNTS 202

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I+RD+ +H  +      +   +       E ++    +++E   LE AY  E   
Sbjct: 203 DIIRLILRDKVIHNYYSGYKFQRKVEKMSKEKQAEMKRFVFDLMYELIELEKAYLKELYE 262

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFET 338
               G+   + + +  + A +    +G +  F   E       +        +  +FF  
Sbjct: 263 G--FGIVEDAIK-FSIYNAGKFLQNLGYDSPFTEEETRIKPEIFAQLSARADENHDFFSG 319

Query: 339 RVTEYQQG 346
             + Y  G
Sbjct: 320 NGSSYVMG 327


>gi|46519447|gb|AAT00095.1| JM118 [Macaca fuscata rhadinovirus]
          Length = 314

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 107/323 (33%), Gaps = 28/323 (8%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              D   L    +            N W P+++ + +D         L+  +R   +   
Sbjct: 12  ESPDRF-LYASDHPGFLALTQETWQNRWFPSQISLHEDSD---EVRLLSPTDREFYQFLF 67

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146
            F   +ESLV  N +  + +  SN +   Y   Q   E +H   +  I+           
Sbjct: 68  TFLGMAESLVNFN-IEDLVKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDL 126

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
             Y +     A     + +  +    + T   K           + ++V EG++F + F 
Sbjct: 127 MTYAKKIVEDATLAKKIDWLHSRVRKATTRAEK----------VLLFLVIEGIYFISSFY 176

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I        M G+     YI RDE LH      + N +   +              +  
Sbjct: 177 SIGLFRLRGVMRGVCLANDYISRDELLHTRAAGLLYNTMISRD----ESPSVAYIHGLFR 232

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWM 323
           EA  +E  +   +  +G   +N    EQ++Q  A+R    I + PLF        P  + 
Sbjct: 233 EAVEIETLFIR-SKSRGVTMVNVGDIEQFLQATADRILKSINVPPLFGARPPNACPLSY- 290

Query: 324 SEVIDLKKEKNFFETRVTEYQQG 346
                  K  NFFE   +EY   
Sbjct: 291 ----TSAKSVNFFERDNSEYVTS 309


>gi|24943146|ref|NP_733908.1| ORF54 [Callitrichine herpesvirus 3]
 gi|13676697|gb|AAK38263.1|AF319782_57 ORF54 [callitrichine herpesvirus 3]
          Length = 302

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 106/298 (35%), Gaps = 26/298 (8%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
            N W+   + +   +   +    L   +    K    F A +E LV  N +  +     +
Sbjct: 22  RNRWVAVHISL---VRDCEGVRELNPRDLEFYKFLFTFLAMAEKLVNFN-IDELLPQFCS 77

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
            +   Y   Q   E +H  T+  I+  L   + +    Y +           + +   + 
Sbjct: 78  HDIEHYYTEQKAMENIHGETYANILNMLFDGDKKAVAQYADEVIADKALQAKICWLNGMV 137

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
           + + T   K           + +++ EG++F + F  I  L     M GI     YI RD
Sbjct: 138 NSAVTKAEK----------ILIFLLIEGIFFISSFYSIAVLRTRGIMPGICLANNYISRD 187

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E LH      + N +  ++    +    +    +   A  +E  +  E   +G   ++  
Sbjct: 188 ELLHTTAATLLYNSMTSKSERPQS----EWIEALFRRAVDVEYNFI-EARGRGVTNIDLK 242

Query: 291 SCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
               +++  A+R    +G+  ++      + P  +M+      K  NFFE   +EY  
Sbjct: 243 GIRDFLEATADRILGDLGMTAIYDTRPPPDCPLTYMT----SVKHTNFFEQENSEYTM 296


>gi|167948644|ref|ZP_02535718.1| Ribonucleotide reductase, beta subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 124

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/127 (42%), Positives = 66/127 (51%), Gaps = 3/127 (2%)

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
           YIMRDE LH +FGI V  QI +E          Q  R M  E    E AYA   +    +
Sbjct: 1   YIMRDEVLHASFGIRVAKQIMLEENIAPDP---QAIREMWDECEAAEDAYAGYILRDPIL 57

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           G +        +++ANRR  QIGL   +   E   PW+ E  +L+KEKNFFET VTEYQ 
Sbjct: 58  GYSKDDHMGQFRYVANRRARQIGLSEPYPGAEATLPWLDEQANLRKEKNFFETTVTEYQT 117

Query: 346 GAELKWD 352
           G  L WD
Sbjct: 118 GGALNWD 124


>gi|71894414|ref|YP_278522.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           synoviae 53]
 gi|71851202|gb|AAZ43811.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma
           synoviae 53]
          Length = 339

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 108/322 (33%), Gaps = 29/322 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++P+ +DL  W     +    + ++ R     
Sbjct: 30  NWNFVNDPKDLEVWN---RVTQNFWLPEKIPVSNDLKSWNE---MDKSWQELLVRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +++ A    +A   +      +      AF   VH+ ++  I ++L   +   +   
Sbjct: 84  TLLDTIQATLGDIAQIPNSLTDHEQVIYANFAFMVGVHARSYGTIFSTLSNSDDIEKAHE 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                  + A+A + + Y  +                      +   +  G   Y GF  
Sbjct: 144 WVINNEKLQARAKFLVPYYTSKD---------------PLKSKIAAALMPGFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    K+   ++  + I+RD+ LH  +      Q   + P     E+++ +  +++E
Sbjct: 189 PFYLSARGKLPNTSDIIRLILRDKVLHNYYSGYKYRQKVEKLPKEKQAEYKEFTFKIMYE 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
              LE  +  E       GL A     +  + A +     G E  F   E    P +   
Sbjct: 249 LIELEKDFLRELYDG--FGL-ADEAIAFSLYNAGKFLQNCGYESPFTPEETKISPEVFAQ 305

Query: 327 ID--LKKEKNFFETRVTEYQQG 346
           +     +  +FF    + Y  G
Sbjct: 306 LSARADENHDFFSGNGSSYVMG 327


>gi|270000178|gb|ACZ57936.1| m015L [Myxoma virus]
          Length = 103

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++  +++ EA ++E  +  E +P   +G+N     QY++F+A+R   ++G   +F  T 
Sbjct: 1   EERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSAT- 59

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
           NPF +M E I L+ + NFFE RV++YQ+   +
Sbjct: 60  NPFDFM-ENISLEGKTNFFEKRVSDYQRMGVV 90


>gi|84997706|ref|XP_953574.1| ribonucleoside reductase [Theileria annulata]
 gi|65304571|emb|CAI72896.1| ribonucleoside reductase, putative [Theileria annulata]
          Length = 332

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 116/321 (36%), Gaps = 28/321 (8%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +D+ +L    +   + P+++   W  Y    NN W   +    DD+   K    L     
Sbjct: 16  NDEILLKENHNRWVMFPIEHDTFWILYKEVENNFWAAEDFIFTDDI---KLLYQLPKPIF 72

Query: 80  LMIKRNLGFFASSESLVANNIV---LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
             +   L F  + ++ +    V   L +   +   E R +   Q  +E +H+ T   +  
Sbjct: 73  NTLLNLLSFHINLDNKLICRPVDITLDLLSEVQIAEARAFYGFQLTDENIHTETISSMFQ 132

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
                   LFN   +   +++   +   Y   +    +     + ++ F +   +  V+ 
Sbjct: 133 --------LFNQQLDTNIVSSNTLFLSSY--GMDKIIWLYNECENNKCFFKR-VLLLVIM 181

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           + +++ +       L +   +      +  I  D  +H  F       ++        K 
Sbjct: 182 KLLFYCSINILRDYLLKEKLLPTFITAFDSITNDRIIHTRFAHCTFRLLQN-------KM 234

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
            + +   ++ +A  LE  +  +     F  L+    + Y+++I N      G + L+  +
Sbjct: 235 LESEVLEIIKQALKLEYQFILQYFTIQFFNLSTNVIKSYLEWIGNNILLVCGYKTLY-TS 293

Query: 317 ENPFPWMSEVI---DLKKEKN 334
           E    W++  I   +++K+ N
Sbjct: 294 EFDIDWLNHPIIDLNIQKQTN 314


>gi|291336893|gb|ADD96422.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
          Length = 172

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 66/159 (41%), Positives = 103/159 (64%), Gaps = 1/159 (0%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
           + VNQ+LP K+   W+ +L +  N+W P E+ M  D+  WK  + L+DDE+L++KR LGF
Sbjct: 13  AGVNQILPHKHKSVWDNFLKSVANNWSPAEINMSTDIKQWK-GDDLSDDEKLLVKRCLGF 71

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
           FA SESLVANN++L + R +++ ECRQY+LRQA+EE++H+ T      S GL   E+F  
Sbjct: 72  FAGSESLVANNLLLTVARWVTDAECRQYILRQAYEESLHNWTVVTCCDSFGLKVSEVFEA 131

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
           Y+ + SI AK ++ +  T  ++   F+T T +  + F +
Sbjct: 132 YQNIESIKAKDDFLMGITTDVNRQGFSTKTSEGKRIFKK 170


>gi|59912|emb|CAA24930.1| unnamed protein product [Human herpesvirus 2]
          Length = 337

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 113/307 (36%), Gaps = 30/307 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 53  NRWLETELVFVGDEED---VSKLSEGELGFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 108

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           +   Y + Q   E VHS  +  I   L  +  +    Y             + + +    
Sbjct: 109 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVARTINHPAIRVKVDWLEA--- 165

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                  +  + + + + F+  ++ EG++F   FA I  L   N +    +    I RDE
Sbjct: 166 -------RVRECDSVPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLISRDE 218

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA-- 289
           ++H      + N    ++     K    +   +  EA  +EI +     P     L+   
Sbjct: 219 AVHTTASCYIYNNYLGDH----AKPEAARVYRLFREAVDIEIGFIRSQAPTDSSILSPGA 274

Query: 290 -PSCEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
             + E Y++F A+R    I ++PL+         P      ++   K  NFFE R T Y 
Sbjct: 275 LAAIENYVRFSADRLLGLIHMQPLYSAPAPDASFPLS----LMSTDKHTNFFECRSTSYA 330

Query: 345 QGAELKW 351
            GA +  
Sbjct: 331 -GAVVND 336


>gi|26553540|ref|NP_757474.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
           penetrans HF-2]
 gi|26453546|dbj|BAC43878.1| ribonucleotide diphosphate reductase subunit beta [Mycoplasma
           penetrans HF-2]
          Length = 339

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 108/328 (32%), Gaps = 29/328 (8%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +   K    W        N W+P ++ + +DL  W   N L  + + ++ R     
Sbjct: 30  NWNFINDDKDLEVWN---RITQNFWLPEKIAISNDLPSW---NKLDSNWQELVVRTFTGL 83

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
              +S+ A    +A  ++      +      AF   VH+ ++  I ++    +      +
Sbjct: 84  TLLDSIQATIGDVAQVKNSLTDHEQVIYTNFAFMVGVHARSYGSIFSTFCSSDQINSAHD 143

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
                 S+  +A   + Y                         V   +  G   Y GF  
Sbjct: 144 WVVNCESLQKRAQVLIPYYIGDD---------------PLKSKVAAAMMPGFLLYGGFYL 188

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              LG  N +    +  + I+RD+ +H  +      +   + P     E ++    +L++
Sbjct: 189 PFYLGAKNLLPNTLDIIRLILRDKVIHNYYSGYKYQKKVAKLPPEKQAEMKKFVFDLLYQ 248

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMS 324
              LE  + +E      +   A    ++  + A +    +G +  F   E       ++ 
Sbjct: 249 VIDLEKEFLNELYAGFNI---ADQAIKFSVYNAGKFLQNLGYDSPFTPEETEIKPEIFVQ 305

Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352
                 +  +FF    + Y  G   + D
Sbjct: 306 LSARADENHDFFSGSGSSYIMGNVEETD 333


>gi|18653874|ref|NP_570808.1| small ribonucleotide reductase [Macacine herpesvirus 5]
 gi|4494972|gb|AAD21394.1| small ribonucleotide reductase [Macaca mulatta rhadinovirus 17577]
          Length = 314

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 107/323 (33%), Gaps = 28/323 (8%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              D   L    +            N W P+++ + +D         L+  +R   +   
Sbjct: 12  ESPDRF-LYASDHPGFLALTQETWQNRWFPSQISLHEDSD---EVRLLSPTDREFYQFLF 67

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146
            F   +ESLV  N +  + +  SN +   Y   Q   E +H   +  I+           
Sbjct: 68  TFLGMAESLVNFN-IEDLVKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDL 126

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
            +Y +     A     + +  +    + T   K           + ++V EG++F + F 
Sbjct: 127 MIYAKKIVEDATLAKKIDWLHSRVRKATTRAEK----------VLLFLVIEGIYFISSFY 176

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I        M G+     YI RDE LH      + N +   +              +  
Sbjct: 177 SIGLFRLRGIMRGVCLANDYISRDELLHTRAASLLYNTMISRD----ESPSVAYIHGLFR 232

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWM 323
           EA  +E  +   +  +    +N    EQ++Q  A+R    I + PLF        P  + 
Sbjct: 233 EAVEIETLFIR-SKSRDVTMVNVGDIEQFLQATADRILKSINIPPLFGARPPNACPLSY- 290

Query: 324 SEVIDLKKEKNFFETRVTEYQQG 346
                  K  NFFE   +EY   
Sbjct: 291 ----TSAKSVNFFERDNSEYVTS 309


>gi|321496611|ref|YP_004207896.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru]
 gi|320332513|gb|ADW24401.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru]
 gi|320332596|gb|ADW24483.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru]
          Length = 307

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 104/316 (32%), Gaps = 27/316 (8%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           +            N W P ++P+  D         L++ ++   K    F   +E LV  
Sbjct: 15  HPGFLALTEETWKNRWFPYQIPLAVDAKD---VTKLSETDKEFYKFLFIFLGLAEKLVNF 71

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
           N +  +   + + + + Y   Q   E +H   +  I+      +      Y         
Sbjct: 72  N-IDELLVGIHSHDAKHYYDEQEAMENIHGKVYANILNLFFEGDKAKMRQYAHFVVGNPG 130

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
               L +             K  +   + +  + +++ EG++F + F  I  L       
Sbjct: 131 LKAKLSWLHD----------KVREATTIAEKVLVFLLIEGIFFVSSFYSIGLLRVRGICN 180

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           G+     YI RDE LH      + N +   +              +  EA  +EI +  E
Sbjct: 181 GVCLANDYISRDELLHTRAAALLYNTLVDPDRKPPVH----WIHNLFREAVDVEIRFIRE 236

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNF 335
              +G   +N      +++  A+R   QI L  L+     +  P  +        K  NF
Sbjct: 237 -RGRGVTAVNIEDIISFLKATADRMLTQIKLPILYGELAPSGCPLAF----NACVKNINF 291

Query: 336 FETRVTEYQQGAELKW 351
           FE   T+Y   +    
Sbjct: 292 FEREGTDYS-SSVTND 306


>gi|290766061|gb|ADD60039.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
          Length = 340

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 56  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 111

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I AK +W      
Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 165

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 166 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K    +   +  +A  +EI +     P     L
Sbjct: 218 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 329

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 330 TSYA-GAVVND 339


>gi|308233466|ref|ZP_07664203.1| ribonucleotide-diphosphate reductase subunit beta [Atopobium
           vaginae DSM 15829]
 gi|328943412|ref|ZP_08240877.1| ribonucleotide-diphosphate reductase subunit beta [Atopobium
           vaginae DSM 15829]
 gi|327491381|gb|EGF23155.1| ribonucleotide-diphosphate reductase subunit beta [Atopobium
           vaginae DSM 15829]
          Length = 339

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 113/355 (31%), Gaps = 29/355 (8%)

Query: 1   MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
           M + + + P           DK              ++     E +     N W+P  +P
Sbjct: 1   MQSASNVQPTSQSPVDFAYADK---GCNMRAVNWNRIQDEKDLEVWNRVTQNFWLPENIP 57

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +DL  W     L    + +I R        +++ A    +A  RH      +      
Sbjct: 58  VSNDLPSWNE---LDSSWQQLIIRTFTGLTLLDTVQATVGDVAQIRHALTDIEQANYANF 114

Query: 121 AFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
           AF  AVH+ ++  + ++L   E   E         ++  +A   + Y             
Sbjct: 115 AFMVAVHARSYGTVFSTLCSSEQIDEAQAWVVNNDALQKRAKALIPYYTGSD-------- 166

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
                       V   +  G   Y GF     L   +K+   ++  + I+RD+ +H  + 
Sbjct: 167 -------PLKSKVAAALMPGFLLYGGFYLPFYLSARSKLPNTSDMIRLILRDKVIHNYYS 219

Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
                Q   +      +  +     ++++   LE AY  +      +   A    ++  +
Sbjct: 220 GYKFQQKVRKLTSDEQQTVKDFVFDLMYQLIDLEKAYLQDLYKDFDL---ADDAIRFSLY 276

Query: 299 IANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
            A +    +G +  F   E   +P  +        +  +FF    + Y  G   +
Sbjct: 277 NAGKFLQNLGYDSPFSEQETYISPEVFAQLSARADENHDFFSGSGSSYVIGTSEE 331


>gi|114318828|gb|ABI63502.1| UL40 [Human herpesvirus 1]
 gi|290766139|gb|ADD60116.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
          Length = 340

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 56  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 111

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I AK +W      
Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 165

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 166 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K    +   +  +A  +EI +     P     L
Sbjct: 218 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 329

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 330 TSYA-GAVVND 339


>gi|83642896|ref|YP_438184.1| ORF60 [Ovine herpesvirus 2]
 gi|61971010|gb|AAX58095.1| ORF60 [Ovine herpesvirus 2]
 gi|78127895|gb|ABB22279.1| ribonucleotide-reductase small subunit-like protein [Ovine
           herpesvirus 2]
          Length = 305

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 106/312 (33%), Gaps = 36/312 (11%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
            ++       N W P ++ +  D+   K    L++ E    K    F   +E+LV  N +
Sbjct: 16  FFDLTQETFQNRWFPAQINLTADV---KCLGSLSEKEVAFYKYLFTFLGMAETLVNFN-I 71

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELF-NMYREVPSITA 157
             +       + + Y   Q   E VH   +  I+  L  +   E   F     E   +  
Sbjct: 72  DELVAGFEIHDVKHYYCEQMAMECVHGKVYFNILNMLFKNNIAETRAFAESVLEDEPLRK 131

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           K  W     +T  S +                 + + + EG++F + F  I  L     M
Sbjct: 132 KLQWLEGKIKTAESAAEK--------------VLIFYLIEGIFFISSFYCIGLLRVKGVM 177

Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
            G+     YI RDE LH      + N +         K  +     +  EA  +E  +  
Sbjct: 178 PGVCMANDYISRDELLHTRAAALLYNTVI----PQEGKPSEAWIIDLFKEAVSIEDEFIR 233

Query: 278 ETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEK 333
                G VG +N     ++++  A+R  + IGL   F        P           K  
Sbjct: 234 --AKSGEVGFVNVADIRRFLEATADRLLNSIGLPVHFKSEPPKSCPLT----YTGCIKNV 287

Query: 334 NFFETRVTEYQQ 345
           +FFE   TEY  
Sbjct: 288 SFFERESTEYST 299


>gi|222478371|gb|ACM62263.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
          Length = 340

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 56  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 111

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I AK +W      
Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 165

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 166 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K    +   +  +A  +EI +     P     L
Sbjct: 218 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 329

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 330 TSYA-GAVVND 339


>gi|9629421|ref|NP_044642.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
 gi|132622|sp|P10224|RIR2_HHV11 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           Short=R2; AltName: Full=Ribonucleotide reductase 38 kDa
           subunit; AltName: Full=Ribonucleotide reductase small
           subunit; Flags: Precursor
 gi|59540|emb|CAA32303.1| ribonucleotide reductase small subunit [Human herpesvirus 1]
          Length = 340

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 56  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 111

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I AK +W      
Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 165

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 166 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K    +   +  +A  +EI +     P     L
Sbjct: 218 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 329

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 330 TSYA-GAVVND 339


>gi|9629310|ref|NP_044510.1| ribonucleotide reductase subunit 2 [Human herpesvirus 2]
 gi|61231410|sp|P69520|RIR2_HHV23 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase 38 kDa subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|61231418|sp|P69521|RIR2_HHV2H RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           Short=R2; AltName: Full=Ribonucleotide reductase 38 kDa
           subunit; AltName: Full=Ribonucleotide reductase small
           subunit
 gi|330200|gb|AAA45807.1| 38K protein [Human herpesvirus 2]
 gi|1869863|emb|CAB06726.1| ribonucleotide reductase small subunit [Human herpesvirus 2]
 gi|224613173|dbj|BAH24264.1| ribonucleotide reductase small subunit [Human herpesvirus 2]
 gi|224613175|dbj|BAH24265.1| ribonucleotide reductase small subunit [Human herpesvirus 2]
          Length = 337

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 111/307 (36%), Gaps = 30/307 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 53  NRWLETELVFVGDEED---VSKLSEGELGFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 108

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           +   Y + Q   E VHS  +  I   L  +  +    Y             + + +    
Sbjct: 109 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVARTINHPAIRVKVDWLEA--- 165

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                  +  + + + + F+  ++ EG++F   FA I  L   N +    +    I RDE
Sbjct: 166 -------RVRECDSIPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLISRDE 218

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA-- 289
           ++H      + N           K    +   +  EA  +EI +     P     L+   
Sbjct: 219 AVHTTASCYIYNNYL----GGHAKPEAARVYRLFREAVDIEIGFIRSQAPTDSSILSPGA 274

Query: 290 -PSCEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
             + E Y++F A+R    I ++PL+         P      ++   K  NFFE R T Y 
Sbjct: 275 LAAIENYVRFSADRLLGLIHMQPLYSAPAPDASFPLS----LMSTDKHTNFFECRSTSYA 330

Query: 345 QGAELKW 351
            GA +  
Sbjct: 331 -GAVVND 336


>gi|1172944|sp|P06474|RIR2_HHV1K RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase 38 kDa subunit;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|807641|gb|AAA66436.1| unknown protein [Human herpesvirus 1]
          Length = 340

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 112/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 56  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 111

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E  HS  +  I   L  +      E        P+I AK +W      
Sbjct: 112 DILHYYVEQECIEVAHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 165

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 166 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K    +   +  +A  +EI +     P     L
Sbjct: 218 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 329

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 330 TSYA-GAVVND 339


>gi|30960729|gb|AAP39158.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 114/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 23  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I AK +W      
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +  ++ + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 133 --------LEARVRECAYVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NA---PSCEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +     + E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPL----SLMSTDKHTNFFECRS 296

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 297 TSYA-GAVVND 306


>gi|12642668|gb|AAK00340.1| ribonucleotide reductase small subunit [Bovine herpesvirus 2]
          Length = 313

 Score =  106 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 67/307 (21%), Positives = 117/307 (38%), Gaps = 30/307 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ +E+    D       + L+  E    +    F ++++ LV    +  +       
Sbjct: 29  NRWLESELVFAGDEED---VDRLSPGELDFYRFLFTFLSAADDLVTEE-LGRLSGLFYQK 84

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           +   Y + Q   E VHS  +  I   L  ++     +Y          +  + + +    
Sbjct: 85  DILHYYVEQECIEVVHSRVYSIIQMVLFKNDDAARRIYVARTVGHPAIHAKVDWLEA--- 141

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                  +  D   + + F+  ++ EG++F   FA I  L  +N +    +    I RDE
Sbjct: 142 -------RVRDCPSVPEKFILMILIEGIFFAASFAAIAFLRTSNLLKVTCQSNDLISRDE 194

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN--- 288
           ++H      + N     +P       +Q    +  EA  +EIA+    MP+    L+   
Sbjct: 195 AVHTTASCCIYNNYIGAHPKPPPTRVRQ----LFLEAVDIEIAFIRAKMPRDGQVLSESA 250

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKY---TEN-PFPWMSEVIDLKKEKNFFETRVTEYQ 344
             S E Y++F A+R    IG +PLF       N P      ++   K  NFFE R T Y 
Sbjct: 251 VASIENYVRFSADRLLCLIGDQPLFNAPPPDANFPL----RLMSTDKHTNFFECRSTAYA 306

Query: 345 QGAELKW 351
            GA +  
Sbjct: 307 -GAVVND 312


>gi|7330057|gb|AAF60046.1|AF210726_67 small ribonuclease reductase [Rhesus monkey rhadinovirus H26-95]
          Length = 304

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 107/323 (33%), Gaps = 28/323 (8%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              D   L    +            N W P+++ + +D         L+  +R   +   
Sbjct: 2   ESPDRF-LYASDHPGFLALTQETWQNRWFPSQISLHEDSD---EVRLLSPTDREFYQFLF 57

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146
            F   +ESLV  N +  + +  SN +   Y   Q   E +H   +  I+           
Sbjct: 58  TFLGMAESLVNFN-IEDLVKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDL 116

Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
            +Y +     A     + +  +    + T   K           + ++V EG++F + F 
Sbjct: 117 MIYAKKIVEDATLAKKIDWLHSRVRKATTRAEK----------VLLFLVIEGIYFISSFY 166

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            I        M G+     YI RDE LH      + N +   +              +  
Sbjct: 167 SIGLFRLRGIMRGVCLANDYISRDELLHTRAASLLYNTMISRD----ESPSVAYIHGLFR 222

Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWM 323
           EA  +E  +   +  +    +N    EQ++Q  A+R    I + PLF        P  + 
Sbjct: 223 EAVEIETLFIR-SKSRDVTMVNVGDIEQFLQATADRILKSINIPPLFGARPPNACPLSY- 280

Query: 324 SEVIDLKKEKNFFETRVTEYQQG 346
                  K  NFFE   +EY   
Sbjct: 281 ----TSAKSVNFFERDNSEYVTS 299


>gi|32453719|ref|NP_861928.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
           RB69]
 gi|32350538|gb|AAP76137.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
           RB69]
          Length = 390

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 128/359 (35%), Gaps = 39/359 (10%)

Query: 7   LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
           +S +    ++V+V ++ M            ++    +E+ +   +  W P EV +  D A
Sbjct: 1   MSTVFN-TQQVDVLNEPMFFGSGLGLARYDIQRHKVFEELIEILSFFWRPEEVNLMLDSA 59

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F E +
Sbjct: 60  QF---NKLPQFQQDICTNNLKYQSLLDSIQGRAPSAVLMALISDPSLDTWVATWTFSETI 116

Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
           HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +          E  
Sbjct: 117 HSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGKYYDDVLVKTRNWENAKEVYECS 176

Query: 187 ---------------------------QDLFVFYVVFEGMWFYTGFAQILSLGRAN-KMV 218
                                                E + FY  FA   +  +    M 
Sbjct: 177 IGSCQQNDIEMYEEIMFNAKRDLMKSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIME 236

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLEIA 274
           G A+  ++I RDE LHL     +     +    +   +  +         L +  +    
Sbjct: 237 GNAKIMKFIARDEQLHLRVLSTLSVNFNLVLMAMSGFKLLKNVNKKQLTFLWKLIVKYKE 296

Query: 275 YAHETMPKGF-VGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
           +A      G   G+N  S   ++ ++   R  Q GL  P+    T++P+PW+ E ++  
Sbjct: 297 WAAHLFKDGTCPGINTQSMCAFVDYLTVSRMKQCGLPCPITDAPTKHPYPWIREYLNSD 355


>gi|30960831|gb|AAP39226.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 114/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 23  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I AK +W      
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K   ++   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPERVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 241 SPAALVAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 297 TSYA-GAVVND 306


>gi|30960813|gb|AAP39214.1| UL40 [Human herpesvirus 1]
 gi|30960819|gb|AAP39218.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 114/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 23  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I AK +W      
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K   ++   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPERVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 297 TSYA-GAVVND 306


>gi|33340378|gb|AAQ14729.1|AF320576_197 putative ribonucleoside diphosphate reductase beta chain
           [Enterobacteria phage Felix 01]
          Length = 377

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 131/346 (37%), Gaps = 22/346 (6%)

Query: 8   SPIQAGEKRVN---VDDKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           + ++  ++R N   ++   + L         L   Y   +E Y       W   E P + 
Sbjct: 8   TSLRNDKERRNHAMINQHPIFLGGERKTFDSLNKHYPKIFELYKQQKAQDWSEDEFPFEQ 67

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
               ++S          ++   L +   +++ VA ++  A    +S+      +++Q+  
Sbjct: 68  SRLDFESVPA---SMSGVMLEILKWQWEADTQVAKSLAFAFAPFISDDIYATAIMKQSEI 124

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------T 176
           E +H+ T+  I+     +   + +   +  ++  +     +  + L              
Sbjct: 125 ENLHALTYSEIVRQCIKNPETILDEINQNVAVQDRLKTVNRVLEELLDEGINYRLSYVRD 184

Query: 177 GTKDADQEFLQDLFVFYVVF----EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
              D D      + +  +      EG+ F   FA   +L   +K  GIA+  Q IM DE 
Sbjct: 185 SLLDKDPLHFHKVILKGLFAVTALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEI 244

Query: 233 LHLNFGIDVINQIKIENPHLW-TKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNA 289
           LH    I+V+ +   ++      ++   + + +L E    E  +++    +G   VGLN 
Sbjct: 245 LHTKIDIEVLKETLRDDEWQKAFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNT 304

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTEN-PFPWMSEVIDLKKEKN 334
               +++ + A       G+   F   +  P  +M + +++ KE+N
Sbjct: 305 KLLHEWVYYNAAPLYDMFGIPRDFVAPKEPPLKYMIKKMEIDKEQN 350


>gi|38707874|ref|NP_944994.1| Ribonucleoside triphosphate reductase, beta chain [Enterobacteria
           phage Felix 01]
 gi|238801854|ref|YP_002922904.1| ribonucleoside triphosphate reductase, beta chain [Enterobacteria
           phage WV8]
 gi|33340477|gb|AAQ14828.1| putative ribonucleoside diphosphate reductase beta chain
           [Enterobacteria phage Felix 01]
 gi|216263067|gb|ACJ71935.1| ribonucleoside triphosphate reductase, beta chain [Enterobacteria
           phage WV8]
          Length = 357

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 121/325 (37%), Gaps = 18/325 (5%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
           L         L   Y   +E Y       W   E P +     ++S          ++  
Sbjct: 9   LGGERKTFDSLNKHYPKIFELYKQQKAQDWSEDEFPFEQSRLDFESVPA---SMSGVMLE 65

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L +   +++ VA ++  A    +S+      +++Q+  E +H+ T+  I+     +   
Sbjct: 66  ILKWQWEADTQVAKSLAFAFAPFISDDIYATAIMKQSEIENLHALTYSEIVRQCIKNPET 125

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEFLQDLFVFYVVF- 196
           + +   +  ++  +     +  + L                 D D      + +  +   
Sbjct: 126 ILDEINQNVAVQDRLKTVNRVLEELLDEGINYRLSYVRDSLLDKDPLHFHKVILKGLFAV 185

Query: 197 ---EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG+ F   FA   +L   +K  GIA+  Q IM DE LH    I+V+ +   ++    
Sbjct: 186 TALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKETLRDDEWQK 245

Query: 254 -TKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLE 310
             ++   + + +L E    E  +++    +G   VGLN     +++ + A       G+ 
Sbjct: 246 AFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYNAAPLYDMFGIP 305

Query: 311 PLFKYTEN-PFPWMSEVIDLKKEKN 334
             F   +  P  +M + +++ KE+N
Sbjct: 306 RDFVAPKEPPLKYMIKKMEIDKEQN 330


>gi|269975299|gb|ACZ55523.1| ribonucleoside diphosphate reductase beta chain [Staphylococcus
           phage SA1]
          Length = 357

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 121/325 (37%), Gaps = 18/325 (5%)

Query: 25  LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
           L         L   Y   +E Y       W   E P +     ++S          ++  
Sbjct: 9   LGGERKTFDSLNKHYPKIFELYKQQKAQDWSEDEFPFEQSRLDFESVPA---SMSGVMLE 65

Query: 85  NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
            L +   +++ VA ++  A    +S+      +++Q+  E +H+ T+  I+     +   
Sbjct: 66  ILKWQWEADTQVAKSLAFAFAPFISDDIYATAIMKQSEIENLHALTYSEIVRQCIKNPET 125

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEFLQDLFVFYVVF- 196
           + +   +  ++  +     +  + L                 D D      + +  +   
Sbjct: 126 ILDEINQNIAVQDRLKTVNRVLEELLDEGINYRLSYVRDSLLDKDPLHFHKVILKGLFAV 185

Query: 197 ---EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              EG+ F   FA   +L   +K  GIA+  Q IM DE LH    I+V+ +   ++    
Sbjct: 186 TALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKETLRDDEWQK 245

Query: 254 -TKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLE 310
             ++   + + +L E    E  +++    +G   VGLN     +++ + A       G+ 
Sbjct: 246 AFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYNAAPLYDMFGIP 305

Query: 311 PLFKYTEN-PFPWMSEVIDLKKEKN 334
             F   +  P  +M + +++ KE+N
Sbjct: 306 RDFVAPKEPPLKYMIKKMEIDKEQN 330


>gi|30960492|gb|AAP39000.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 112/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 23  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I AK +W      
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      +             K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYTNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 297 TSYA-GAVVND 306


>gi|218296962|ref|ZP_03497648.1| ribonucleotide reductase [Thermus aquaticus Y51MC23]
 gi|218242665|gb|EED09201.1| ribonucleotide reductase [Thermus aquaticus Y51MC23]
          Length = 323

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/315 (17%), Positives = 117/315 (37%), Gaps = 18/315 (5%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P +Y        +  +++W+ TE     D+             + +++R+L   A  E L
Sbjct: 11  PYEYPGLLRFRDAIRHSYWVHTEFSYSADVQD---HALAEPPVQSLVERSLLAIAQVE-L 66

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
                   +Y     PE  +  +  A  E  H++ + +++  LGL+    F  Y E  + 
Sbjct: 67  SVKLFWARVYDRFPKPEVAEVGMTFAESEVRHANAYAHLLDLLGLEGR--FARYLEEATP 124

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA- 214
                                    + +E+   L +F    E +  ++ F  +++L R  
Sbjct: 125 LRDRA-------GALEGVLARSKNASLEEYALSLLLFSAFVEHISLFSQFYALMALNRRA 177

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
           N+  GIA   +   ++E++H  FG++++  ++ E P L+ + F ++      E    E A
Sbjct: 178 NRFKGIANAVEATSKEENIHGLFGVELLRLLREERPELFGEAFVEEVLRAAQELFRAEEA 237

Query: 275 YAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVIDLK 330
                        +      ++++   N+     GL   F+  +       W +  +   
Sbjct: 238 LVDWIFAGGDTPWVRGEEVLEFVKDRYNQVLALHGLPGPFQVRDEVLKDTAWFALELLAD 297

Query: 331 KEKNFFETRVTEYQQ 345
           K+ +FF  R   Y +
Sbjct: 298 KDVDFFNKRSVAYAR 312


>gi|30960429|gb|AAP38958.1| UL40 [Human herpesvirus 1]
 gi|30960468|gb|AAP38984.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 23  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I AK +W      
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 241 SPAALVAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 297 TSYA-GAVVND 306


>gi|30960231|gb|AAP38826.1| UL40 [Human herpesvirus 1]
 gi|30960234|gb|AAP38828.1| UL40 [Human herpesvirus 1]
 gi|30960237|gb|AAP38830.1| UL40 [Human herpesvirus 1]
 gi|30960240|gb|AAP38832.1| UL40 [Human herpesvirus 1]
 gi|30960243|gb|AAP38834.1| UL40 [Human herpesvirus 1]
 gi|30960246|gb|AAP38836.1| UL40 [Human herpesvirus 1]
 gi|30960249|gb|AAP38838.1| UL40 [Human herpesvirus 1]
 gi|30960252|gb|AAP38840.1| UL40 [Human herpesvirus 1]
 gi|30960255|gb|AAP38842.1| UL40 [Human herpesvirus 1]
 gi|30960258|gb|AAP38844.1| UL40 [Human herpesvirus 1]
 gi|30960261|gb|AAP38846.1| UL40 [Human herpesvirus 1]
 gi|30960264|gb|AAP38848.1| UL40 [Human herpesvirus 1]
 gi|30960267|gb|AAP38850.1| UL40 [Human herpesvirus 1]
 gi|30960270|gb|AAP38852.1| UL40 [Human herpesvirus 1]
 gi|30960273|gb|AAP38854.1| UL40 [Human herpesvirus 1]
 gi|30960276|gb|AAP38856.1| UL40 [Human herpesvirus 1]
 gi|30960279|gb|AAP38858.1| UL40 [Human herpesvirus 1]
 gi|30960282|gb|AAP38860.1| UL40 [Human herpesvirus 1]
 gi|30960285|gb|AAP38862.1| UL40 [Human herpesvirus 1]
 gi|30960288|gb|AAP38864.1| UL40 [Human herpesvirus 1]
 gi|30960291|gb|AAP38866.1| UL40 [Human herpesvirus 1]
 gi|30960294|gb|AAP38868.1| UL40 [Human herpesvirus 1]
 gi|30960297|gb|AAP38870.1| UL40 [Human herpesvirus 1]
 gi|30960300|gb|AAP38872.1| UL40 [Human herpesvirus 1]
 gi|30960303|gb|AAP38874.1| UL40 [Human herpesvirus 1]
 gi|30960306|gb|AAP38876.1| UL40 [Human herpesvirus 1]
 gi|30960309|gb|AAP38878.1| UL40 [Human herpesvirus 1]
 gi|30960312|gb|AAP38880.1| UL40 [Human herpesvirus 1]
 gi|30960315|gb|AAP38882.1| UL40 [Human herpesvirus 1]
 gi|30960318|gb|AAP38884.1| UL40 [Human herpesvirus 1]
 gi|30960321|gb|AAP38886.1| UL40 [Human herpesvirus 1]
 gi|30960324|gb|AAP38888.1| UL40 [Human herpesvirus 1]
 gi|30960327|gb|AAP38890.1| UL40 [Human herpesvirus 1]
 gi|30960330|gb|AAP38892.1| UL40 [Human herpesvirus 1]
 gi|30960333|gb|AAP38894.1| UL40 [Human herpesvirus 1]
 gi|30960336|gb|AAP38896.1| UL40 [Human herpesvirus 1]
 gi|30960339|gb|AAP38898.1| UL40 [Human herpesvirus 1]
 gi|30960342|gb|AAP38900.1| UL40 [Human herpesvirus 1]
 gi|30960345|gb|AAP38902.1| UL40 [Human herpesvirus 1]
 gi|30960348|gb|AAP38904.1| UL40 [Human herpesvirus 1]
 gi|30960351|gb|AAP38906.1| UL40 [Human herpesvirus 1]
 gi|30960354|gb|AAP38908.1| UL40 [Human herpesvirus 1]
 gi|30960357|gb|AAP38910.1| UL40 [Human herpesvirus 1]
 gi|30960360|gb|AAP38912.1| UL40 [Human herpesvirus 1]
 gi|30960363|gb|AAP38914.1| UL40 [Human herpesvirus 1]
 gi|30960366|gb|AAP38916.1| UL40 [Human herpesvirus 1]
 gi|30960369|gb|AAP38918.1| UL40 [Human herpesvirus 1]
 gi|30960372|gb|AAP38920.1| UL40 [Human herpesvirus 1]
 gi|30960375|gb|AAP38922.1| UL40 [Human herpesvirus 1]
 gi|30960378|gb|AAP38924.1| UL40 [Human herpesvirus 1]
 gi|30960381|gb|AAP38926.1| UL40 [Human herpesvirus 1]
 gi|30960384|gb|AAP38928.1| UL40 [Human herpesvirus 1]
 gi|30960387|gb|AAP38930.1| UL40 [Human herpesvirus 1]
 gi|30960390|gb|AAP38932.1| UL40 [Human herpesvirus 1]
 gi|30960393|gb|AAP38934.1| UL40 [Human herpesvirus 1]
 gi|30960396|gb|AAP38936.1| UL40 [Human herpesvirus 1]
 gi|30960399|gb|AAP38938.1| UL40 [Human herpesvirus 1]
 gi|30960402|gb|AAP38940.1| UL40 [Human herpesvirus 1]
 gi|30960405|gb|AAP38942.1| UL40 [Human herpesvirus 1]
 gi|30960408|gb|AAP38944.1| UL40 [Human herpesvirus 1]
 gi|30960411|gb|AAP38946.1| UL40 [Human herpesvirus 1]
 gi|30960414|gb|AAP38948.1| UL40 [Human herpesvirus 1]
 gi|30960417|gb|AAP38950.1| UL40 [Human herpesvirus 1]
 gi|30960432|gb|AAP38960.1| UL40 [Human herpesvirus 1]
 gi|30960435|gb|AAP38962.1| UL40 [Human herpesvirus 1]
 gi|30960438|gb|AAP38964.1| UL40 [Human herpesvirus 1]
 gi|30960441|gb|AAP38966.1| UL40 [Human herpesvirus 1]
 gi|30960444|gb|AAP38968.1| UL40 [Human herpesvirus 1]
 gi|30960447|gb|AAP38970.1| UL40 [Human herpesvirus 1]
 gi|30960450|gb|AAP38972.1| UL40 [Human herpesvirus 1]
 gi|30960453|gb|AAP38974.1| UL40 [Human herpesvirus 1]
 gi|30960456|gb|AAP38976.1| UL40 [Human herpesvirus 1]
 gi|30960459|gb|AAP38978.1| UL40 [Human herpesvirus 1]
 gi|30960462|gb|AAP38980.1| UL40 [Human herpesvirus 1]
 gi|30960471|gb|AAP38986.1| UL40 [Human herpesvirus 1]
 gi|30960474|gb|AAP38988.1| UL40 [Human herpesvirus 1]
 gi|30960477|gb|AAP38990.1| UL40 [Human herpesvirus 1]
 gi|30960480|gb|AAP38992.1| UL40 [Human herpesvirus 1]
 gi|30960483|gb|AAP38994.1| UL40 [Human herpesvirus 1]
 gi|30960486|gb|AAP38996.1| UL40 [Human herpesvirus 1]
 gi|30960489|gb|AAP38998.1| UL40 [Human herpesvirus 1]
 gi|30960495|gb|AAP39002.1| UL40 [Human herpesvirus 1]
 gi|30960498|gb|AAP39004.1| UL40 [Human herpesvirus 1]
 gi|30960501|gb|AAP39006.1| UL40 [Human herpesvirus 1]
 gi|30960504|gb|AAP39008.1| UL40 [Human herpesvirus 1]
 gi|30960507|gb|AAP39010.1| UL40 [Human herpesvirus 1]
 gi|30960510|gb|AAP39012.1| UL40 [Human herpesvirus 1]
 gi|30960513|gb|AAP39014.1| UL40 [Human herpesvirus 1]
 gi|30960516|gb|AAP39016.1| UL40 [Human herpesvirus 1]
 gi|30960519|gb|AAP39018.1| UL40 [Human herpesvirus 1]
 gi|30960522|gb|AAP39020.1| UL40 [Human herpesvirus 1]
 gi|30960528|gb|AAP39024.1| UL40 [Human herpesvirus 1]
 gi|30960531|gb|AAP39026.1| UL40 [Human herpesvirus 1]
 gi|30960534|gb|AAP39028.1| UL40 [Human herpesvirus 1]
 gi|30960537|gb|AAP39030.1| UL40 [Human herpesvirus 1]
 gi|30960540|gb|AAP39032.1| UL40 [Human herpesvirus 1]
 gi|30960543|gb|AAP39034.1| UL40 [Human herpesvirus 1]
 gi|30960546|gb|AAP39036.1| UL40 [Human herpesvirus 1]
 gi|30960549|gb|AAP39038.1| UL40 [Human herpesvirus 1]
 gi|30960552|gb|AAP39040.1| UL40 [Human herpesvirus 1]
 gi|30960555|gb|AAP39042.1| UL40 [Human herpesvirus 1]
 gi|30960558|gb|AAP39044.1| UL40 [Human herpesvirus 1]
 gi|30960561|gb|AAP39046.1| UL40 [Human herpesvirus 1]
 gi|30960564|gb|AAP39048.1| UL40 [Human herpesvirus 1]
 gi|30960567|gb|AAP39050.1| UL40 [Human herpesvirus 1]
 gi|30960570|gb|AAP39052.1| UL40 [Human herpesvirus 1]
 gi|30960573|gb|AAP39054.1| UL40 [Human herpesvirus 1]
 gi|30960576|gb|AAP39056.1| UL40 [Human herpesvirus 1]
 gi|30960579|gb|AAP39058.1| UL40 [Human herpesvirus 1]
 gi|30960582|gb|AAP39060.1| UL40 [Human herpesvirus 1]
 gi|30960585|gb|AAP39062.1| UL40 [Human herpesvirus 1]
 gi|30960588|gb|AAP39064.1| UL40 [Human herpesvirus 1]
 gi|30960591|gb|AAP39066.1| UL40 [Human herpesvirus 1]
 gi|30960594|gb|AAP39068.1| UL40 [Human herpesvirus 1]
 gi|30960597|gb|AAP39070.1| UL40 [Human herpesvirus 1]
 gi|30960600|gb|AAP39072.1| UL40 [Human herpesvirus 1]
 gi|30960603|gb|AAP39074.1| UL40 [Human herpesvirus 1]
 gi|30960606|gb|AAP39076.1| UL40 [Human herpesvirus 1]
 gi|30960609|gb|AAP39078.1| UL40 [Human herpesvirus 1]
 gi|30960612|gb|AAP39080.1| UL40 [Human herpesvirus 1]
 gi|30960615|gb|AAP39082.1| UL40 [Human herpesvirus 1]
 gi|30960618|gb|AAP39084.1| UL40 [Human herpesvirus 1]
 gi|30960621|gb|AAP39086.1| UL40 [Human herpesvirus 1]
 gi|30960624|gb|AAP39088.1| UL40 [Human herpesvirus 1]
 gi|30960627|gb|AAP39090.1| UL40 [Human herpesvirus 1]
 gi|30960630|gb|AAP39092.1| UL40 [Human herpesvirus 1]
 gi|30960633|gb|AAP39094.1| UL40 [Human herpesvirus 1]
 gi|30960636|gb|AAP39096.1| UL40 [Human herpesvirus 1]
 gi|30960639|gb|AAP39098.1| UL40 [Human herpesvirus 1]
 gi|30960642|gb|AAP39100.1| UL40 [Human herpesvirus 1]
 gi|30960645|gb|AAP39102.1| UL40 [Human herpesvirus 1]
 gi|30960648|gb|AAP39104.1| UL40 [Human herpesvirus 1]
 gi|30960651|gb|AAP39106.1| UL40 [Human herpesvirus 1]
 gi|30960657|gb|AAP39110.1| UL40 [Human herpesvirus 1]
 gi|30960660|gb|AAP39112.1| UL40 [Human herpesvirus 1]
 gi|30960663|gb|AAP39114.1| UL40 [Human herpesvirus 1]
 gi|30960666|gb|AAP39116.1| UL40 [Human herpesvirus 1]
 gi|30960669|gb|AAP39118.1| UL40 [Human herpesvirus 1]
 gi|30960672|gb|AAP39120.1| UL40 [Human herpesvirus 1]
 gi|30960675|gb|AAP39122.1| UL40 [Human herpesvirus 1]
 gi|30960678|gb|AAP39124.1| UL40 [Human herpesvirus 1]
 gi|30960681|gb|AAP39126.1| UL40 [Human herpesvirus 1]
 gi|30960684|gb|AAP39128.1| UL40 [Human herpesvirus 1]
 gi|30960687|gb|AAP39130.1| UL40 [Human herpesvirus 1]
 gi|30960690|gb|AAP39132.1| UL40 [Human herpesvirus 1]
 gi|30960693|gb|AAP39134.1| UL40 [Human herpesvirus 1]
 gi|30960696|gb|AAP39136.1| UL40 [Human herpesvirus 1]
 gi|30960699|gb|AAP39138.1| UL40 [Human herpesvirus 1]
 gi|30960702|gb|AAP39140.1| UL40 [Human herpesvirus 1]
 gi|30960711|gb|AAP39146.1| UL40 [Human herpesvirus 1]
 gi|30960714|gb|AAP39148.1| UL40 [Human herpesvirus 1]
 gi|30960717|gb|AAP39150.1| UL40 [Human herpesvirus 1]
 gi|30960720|gb|AAP39152.1| UL40 [Human herpesvirus 1]
 gi|30960723|gb|AAP39154.1| UL40 [Human herpesvirus 1]
 gi|30960726|gb|AAP39156.1| UL40 [Human herpesvirus 1]
 gi|30960732|gb|AAP39160.1| UL40 [Human herpesvirus 1]
 gi|30960735|gb|AAP39162.1| UL40 [Human herpesvirus 1]
 gi|30960738|gb|AAP39164.1| UL40 [Human herpesvirus 1]
 gi|30960741|gb|AAP39166.1| UL40 [Human herpesvirus 1]
 gi|30960744|gb|AAP39168.1| UL40 [Human herpesvirus 1]
 gi|30960747|gb|AAP39170.1| UL40 [Human herpesvirus 1]
 gi|30960750|gb|AAP39172.1| UL40 [Human herpesvirus 1]
 gi|30960756|gb|AAP39176.1| UL40 [Human herpesvirus 1]
 gi|30960759|gb|AAP39178.1| UL40 [Human herpesvirus 1]
 gi|30960762|gb|AAP39180.1| UL40 [Human herpesvirus 1]
 gi|30960765|gb|AAP39182.1| UL40 [Human herpesvirus 1]
 gi|30960768|gb|AAP39184.1| UL40 [Human herpesvirus 1]
 gi|30960771|gb|AAP39186.1| UL40 [Human herpesvirus 1]
 gi|30960774|gb|AAP39188.1| UL40 [Human herpesvirus 1]
 gi|30960780|gb|AAP39192.1| UL40 [Human herpesvirus 1]
 gi|30960783|gb|AAP39194.1| UL40 [Human herpesvirus 1]
 gi|30960786|gb|AAP39196.1| UL40 [Human herpesvirus 1]
 gi|30960789|gb|AAP39198.1| UL40 [Human herpesvirus 1]
 gi|30960792|gb|AAP39200.1| UL40 [Human herpesvirus 1]
 gi|30960795|gb|AAP39202.1| UL40 [Human herpesvirus 1]
 gi|30960798|gb|AAP39204.1| UL40 [Human herpesvirus 1]
 gi|30960801|gb|AAP39206.1| UL40 [Human herpesvirus 1]
 gi|30960804|gb|AAP39208.1| UL40 [Human herpesvirus 1]
 gi|30960807|gb|AAP39210.1| UL40 [Human herpesvirus 1]
 gi|30960810|gb|AAP39212.1| UL40 [Human herpesvirus 1]
 gi|30960816|gb|AAP39216.1| UL40 [Human herpesvirus 1]
 gi|30960822|gb|AAP39220.1| UL40 [Human herpesvirus 1]
 gi|30960825|gb|AAP39222.1| UL40 [Human herpesvirus 1]
 gi|30960828|gb|AAP39224.1| UL40 [Human herpesvirus 1]
 gi|30960834|gb|AAP39228.1| UL40 [Human herpesvirus 1]
 gi|30960840|gb|AAP39232.1| UL40 [Human herpesvirus 1]
 gi|30960843|gb|AAP39234.1| UL40 [Human herpesvirus 1]
 gi|30960846|gb|AAP39236.1| UL40 [Human herpesvirus 1]
 gi|30960849|gb|AAP39238.1| UL40 [Human herpesvirus 1]
 gi|30960852|gb|AAP39240.1| UL40 [Human herpesvirus 1]
 gi|30960855|gb|AAP39242.1| UL40 [Human herpesvirus 1]
 gi|30960858|gb|AAP39244.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 23  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I AK +W      
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 297 TSYA-GAVVND 306


>gi|30960705|gb|AAP39142.1| UL40 [Human herpesvirus 1]
 gi|30960777|gb|AAP39190.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 23  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I AK +W      
Sbjct: 79  DIIHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 297 TSYA-GAVVND 306


>gi|30960420|gb|AAP38952.1| UL40 [Human herpesvirus 1]
 gi|30960423|gb|AAP38954.1| UL40 [Human herpesvirus 1]
 gi|30960426|gb|AAP38956.1| UL40 [Human herpesvirus 1]
 gi|30960465|gb|AAP38982.1| UL40 [Human herpesvirus 1]
 gi|30960525|gb|AAP39022.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 23  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I AK +W      
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----SGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 297 TSYA-GAVVND 306


>gi|30960654|gb|AAP39108.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 23  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-MGGLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I AK +W      
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 297 TSYA-GAVVND 306


>gi|30960708|gb|AAP39144.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 23  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I AK +W      
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 297 TSYA-GAVVND 306


>gi|332672470|ref|YP_004421714.1| Ribonucleotide reductase, small subunit [Campylobacter phage
           NCTC12673]
 gi|327493647|gb|AEA86506.1| Ribonucleotide reductase, small subunit [Campylobacter phage
           NCTC12673]
          Length = 378

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 122/314 (38%), Gaps = 24/314 (7%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGW-----AWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +   ++         Q    +Y W                 W P E+ M   +   KS  
Sbjct: 11  DRSKEKFFFGEYSGFQ----RYDWYSHNQLESLDRKQQAQLWFPEEISM---IHEPKSFI 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L +  +  IK NL F    +S     +   +   +++      L  QA+ E +HS ++ 
Sbjct: 64  ELPEHNQRQIKANLTFQTLMDSGQNRGLDNILIPLVTSSGLEGCLKTQAYFEYIHSRSYS 123

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           +II S+  +  ++F+ Y E P I  + N  +   ++L          D ++  + +  + 
Sbjct: 124 HIIKSVFPNPTDVFDEYCEYPEIKTRINDEIDTYESLEGS---LEENDENKLKILEACLR 180

Query: 193 YVVFEGMWFYTGFAQILSLGRA----NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
               EG+ FY  F     + +     NK+  + +  + I  DE +HL     ++  ++ E
Sbjct: 181 IQFLEGVKFYVSFLTTYMINKYSAGGNKIPNLTKIIKLINNDEDIHLVIFSFILKTLRSE 240

Query: 249 NPHLWTKEFQQ----KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRR 303
               ++  F      K+R +  +    E+ +A   +  G   GL   + + +++F  + R
Sbjct: 241 QHQGFSHLFDDSLSRKARKIAKKVYQDELEWAKYLLSMGPIPGLTIENIDGFLKFFVDDR 300

Query: 304 CHQIGLEPLFKYTE 317
             + G +P++   +
Sbjct: 301 LKKCGFQPIWNAPK 314


>gi|159146681|gb|ABW90785.1| ribonucleotide reductase subunit 2 [Leporid herpesvirus 4]
          Length = 316

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 113/307 (36%), Gaps = 30/307 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ +E+    D       + L+ +E    +    F ++++ LV    +  +    S  
Sbjct: 32  NRWLESELVFSGDERD---VDKLSPEELDFYRFLFTFLSAADDLVTEE-LGRLSSLFSQK 87

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           +   Y + Q   E VHS  +  I   L   +      Y      ++     +++ +    
Sbjct: 88  DILHYYVEQECIEVVHSRVYSIIQMVLFKSDETARRNYVANTVHSSAIQPKVRWLEA--- 144

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                  +  D   + + F+  ++ EG++F   FA I  L   N +    +    I RDE
Sbjct: 145 -------RVRDCPSVPEKFILMILIEGIFFAASFAAIAFLRTHNILKVTCQSNDLISRDE 197

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG---FVGLN 288
           ++H      + N    +     ++  +Q    +   A  +EIA+     P       G  
Sbjct: 198 AVHTTASCCLYNNYLGQYAKPPSERIKQ----LFSNAVEIEIAFIKAKAPANSRILDGAA 253

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
             + E Y++F A+R    IG   LF         P      ++  +K  NFFE R T Y 
Sbjct: 254 IAAIESYVRFSADRLLKLIGEPALFDEPPPNDGFPL----RLMSTEKHTNFFECRSTAYA 309

Query: 345 QGAELKW 351
            GA +  
Sbjct: 310 -GAVVND 315


>gi|30960753|gb|AAP39174.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 67/311 (21%), Positives = 114/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 23  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I AK +W      
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +  I +    I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVICQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 297 TSYA-GAVVND 306


>gi|30960837|gb|AAP39230.1| UL40 [Human herpesvirus 1]
          Length = 307

 Score =  104 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 112/311 (36%), Gaps = 38/311 (12%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ TE+    D       + L++ E    +    F ++++ LV  N +  +       
Sbjct: 23  NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
           +   Y + Q   E VHS  +  I   L  +      E        P+I  K +W      
Sbjct: 79  DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRTKVDW------ 132

Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
                      +  +   + + F+  ++ EG++F   FA I  L   N +    +    I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184

Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
            RDE++H      + N           K    +   +  +A  +EI +     P     L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240

Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
           +  +    E Y++F A+R    I ++PLF         P      ++   K  NFFE R 
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296

Query: 341 TEYQQGAELKW 351
           T Y  GA +  
Sbjct: 297 TSYA-GAVVND 306


>gi|70921511|ref|XP_734071.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56506464|emb|CAH78308.1| hypothetical protein PC000956.02.0 [Plasmodium chabaudi chabaudi]
          Length = 87

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
           +   ++P   +G+N+    QY++F+A+R    +G   +F +++NPF WM  +I L+ + N
Sbjct: 1   FLVWSLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HSKNPFSWMD-LISLQGKTN 58

Query: 335 FFETRVTEYQQGAEL 349
           FFE RV +YQ+   +
Sbjct: 59  FFEKRVADYQKSGVM 73


>gi|67592960|ref|XP_665685.1| ribonucleotide reductase small subunit [Cryptosporidium hominis
           TU502]
 gi|54656484|gb|EAL35456.1| ribonucleotide reductase small subunit [Cryptosporidium hominis]
          Length = 369

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 96/323 (29%), Gaps = 31/323 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
              ++ +L        L P+KY   W  Y     + W    +   +D         + + 
Sbjct: 11  QQKNESILLDNPFRWVLFPIKYSRLWSLYKKYEVSFWTAEVISPMEDKT---KLMNMDER 67

Query: 78  ERLMIKRNLGFFASSE--SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
               I+         +   L    +   +   +  PE R Y       E ++   F   +
Sbjct: 68  LLDYIEMVFAKRIYIDNTCLDTVLLTCELLGQVQVPEARGYFSFTMCMENIYKELFMNYV 127

Query: 136 TSLGLDEGELFNMYREVPSITA-------KANWALQYTQTLSSPSFTTGTKD------AD 182
             L  ++ +                    K  +     + L+     T  K+       +
Sbjct: 128 EMLRKNKEKNEKTDEVEKKDENNLNSKISKEEYEYNLEKKLNELEDFTKMKELVGNFYDE 187

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN-----KMVGIAEQYQYIMRDESLHLNF 237
                +  ++YV+ + ++  +     LS    N         + +    I RDE   + F
Sbjct: 188 DTLFSEKLIYYVIIKKIFSSSIHLLRLSFSMRNISESELPTQLCDGLDRIRRDEQYQVEF 247

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
            + +          + TK    +   +L +A +LE  +    +    + +       ++ 
Sbjct: 248 CLSIAE-------SMKTKPSNDQVVNLLEQAIMLEKNFIFSIVDPQVLQIEREDIVAFLL 300

Query: 298 FIANRRCHQIGLEPLFKYTENPF 320
           F A+     +     F  + NPF
Sbjct: 301 FNADEILVDLKYPRQFNVS-NPF 322


>gi|301750612|gb|ADK88940.1| ribonucleotide reductase subunit 2 [Leporid herpesvirus 4]
          Length = 316

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 112/307 (36%), Gaps = 30/307 (9%)

Query: 52  NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
           N W+ +E+    D       + L+ +E    +    F ++++ LV    +  +    S  
Sbjct: 32  NRWLESELVFSGDERD---VDKLSPEELDFYRFLFTFLSAADDLVTEE-LGRLSSLFSQK 87

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           +   Y + Q   E VHS  +  I   L   +      Y       +     +++ +    
Sbjct: 88  DILHYYVEQECIEVVHSRVYSIIQMVLFKSDETARRNYVANTVHNSAIQAKVRWLEA--- 144

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
                  +  D   + + F+  ++ EG++F   FA I  L   N +    +    I RDE
Sbjct: 145 -------RVRDCPSVPEKFILMILIEGIFFAASFAAIAFLRTHNILKVTCQSNDLISRDE 197

Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG---FVGLN 288
           ++H      + N    +     ++  +Q    +   A  +EIA+     P       G  
Sbjct: 198 AVHTTASCCLYNNYLGQYAKPPSERIKQ----LFSNAVEIEIAFIKAKAPANSRILDGAA 253

Query: 289 APSCEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
             + E Y++F A+R    IG   LF         P      ++  +K  NFFE R T Y 
Sbjct: 254 IAAIESYVRFSADRLLKLIGEPALFDEPPPNDGFPL----RLMSTEKHTNFFECRSTAYA 309

Query: 345 QGAELKW 351
            GA +  
Sbjct: 310 -GAVVND 315


>gi|126649263|ref|XP_001388304.1| ribonucleotide reductase small subunit [Cryptosporidium parvum Iowa
           II]
 gi|126117398|gb|EAZ51498.1| ribonucleotide reductase small subunit [Cryptosporidium parvum Iowa
           II]
          Length = 339

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 97/323 (30%), Gaps = 31/323 (9%)

Query: 18  NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
              ++ +L        L P+KY   W  Y     + W    +   +D         + + 
Sbjct: 11  QQKNESILLDNPFRWVLFPIKYSRLWSLYKKYEVSFWTAEVISPMEDKT---KLMNMDEK 67

Query: 78  ERLMIKRNLGFFASSE--SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
               I+         +   L    +   +   +  PE R Y       E ++   F   +
Sbjct: 68  LLDYIEMAFAKRIYIDNTCLDTVLLTCELLGQVQVPEARGYFSFTMCMENIYKELFMNYV 127

Query: 136 TSLGLDEGELFNMYREVPSITA-------KANWALQYTQTLSSPSFTTGTKD------AD 182
             +  ++ ++                   K  +     + L+     T  K+       +
Sbjct: 128 EMIRKNKEKIERTDEVEKKDENNLNSKISKEEYEYNLEKKLNELEDFTKMKELVGNFYDE 187

Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN-----KMVGIAEQYQYIMRDESLHLNF 237
                +  ++YV+ + ++  +     LS    N         + +    I RDE   + F
Sbjct: 188 DTLFSEKLIYYVIIKKIFSSSIHLLRLSFSMRNISESELPTQLCDGLDRIRRDEQYQVEF 247

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
            + +          + TK    +   +L +A +LE  +    +    + +       ++ 
Sbjct: 248 CLSIAK-------SMKTKPSNDQVVNLLEQAIMLEKNFIFSIVDPQVLQIEREDIVAFLL 300

Query: 298 FIANRRCHQIGLEPLFKYTENPF 320
           F A+     +     F  + NPF
Sbjct: 301 FNADEILVDLKYPRQFNVS-NPF 322


>gi|238584957|ref|XP_002390722.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553]
 gi|215454468|gb|EEB91652.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553]
          Length = 155

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 11  QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
             G+  +   ++ +L        L P++Y   W+ Y  A  + W   E+ +  DL  W  
Sbjct: 62  FVGDVELPESEEPLLKESKRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWN- 120

Query: 71  KNGLTDDERLMIKRNLGFFASSESL 95
            N + D+ER  I   L FFA+S+ +
Sbjct: 121 -NRMNDNERHFISHVLAFFAASDGI 144


>gi|330949821|gb|EGH50081.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
           syringae Cit 7]
          Length = 65

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/65 (64%), Positives = 48/65 (73%)

Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           N    E Y++FIANRR  QIGL+  +  T NPFPWMSE++DLKKEKNFFETRV EYQ G 
Sbjct: 1   NGAGMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGG 60

Query: 348 ELKWD 352
            L WD
Sbjct: 61  ALSWD 65


>gi|10140982|ref|NP_065559.1| ribonucleotide-reductase, small subunit [Alcelaphine herpesvirus 1]
 gi|81984051|sp|O36410|RIR2_ALHV1 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|2338023|gb|AAC58107.1| ribonucleotide-reductase, small subunit [Alcelaphine herpesvirus 1]
          Length = 305

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 104/309 (33%), Gaps = 26/309 (8%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           +   +E       N W P ++ +  D+   K  + +++ +    K    F   +E+LV  
Sbjct: 13  HPGFFELTQETFQNRWFPAQINLSVDV---KCLSLMSEADVNFYKYLFTFLGMAETLVNF 69

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
           N +  +       + + Y   Q   E VH   +  I+  L  +         E      K
Sbjct: 70  N-IDELLVDFECHDIKHYYCEQMAMECVHGKVYFNILNMLFKNN---LAATWEFAEAVLK 125

Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
                +  + L S      TK               + EG++F + F  I  L     M 
Sbjct: 126 DEALQKKLEWLESKIKMAKTKAEKVLIFY-------LIEGVFFISSFYCIGLLRVKGVMP 178

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           G+     YI RDE LH      + N +         +   +   ++  EA  +E A+  E
Sbjct: 179 GVCMANDYISRDELLHTRAAALLYNTMI----PKEERPSSEWVVSLFKEAVEIECAFI-E 233

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNF 335
              K    ++      +++  A+R  + I L   +K       P           K  +F
Sbjct: 234 AKTKQVTFVSMDDIRAFLEATADRLLNSIELPRYYKSDPPQSCPLT----YTGCIKNVSF 289

Query: 336 FETRVTEYQ 344
           FE   TEY 
Sbjct: 290 FERESTEYS 298


>gi|213023521|ref|ZP_03337968.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 256

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 92/267 (34%), Gaps = 25/267 (9%)

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 1   TLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYA 60

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L +  +                         V  E   FY+GF  
Sbjct: 61  WSEENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWL 105

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            +      K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E
Sbjct: 106 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREELKLFALDLLME 165

Query: 268 ATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWM 323
               EI Y        G+V       + ++ + AN+    +G E LF       NP    
Sbjct: 166 LYDNEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILA 221

Query: 324 SEVIDLKKEKNFFETRVTEYQQGAELK 350
           +   +  +  +FF    + Y  G  ++
Sbjct: 222 ALSPNADENHDFFSGSGSSYVMGKTVE 248


>gi|284504289|ref|YP_003407004.1| ribonucleotide reductase small chain [Marseillevirus]
 gi|282935727|gb|ADB04042.1| ribonucleotide reductase small chain [Marseillevirus]
          Length = 280

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 122/287 (42%), Gaps = 25/287 (8%)

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--PECRQYLLRQAF 122
           ++ W   + LT  E+  +K  L FFA  + +V  N+V    + +S+   E   + + QA 
Sbjct: 1   MSDW---SKLTKGEKKFVKLELAFFAQFDGIVVENLVRNFQQEVSSYAKEIEWFYILQAA 57

Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
            E +H+ T+  +I +L     +     +     PSI   ANW  ++              
Sbjct: 58  NELIHNETYMNLIDNLLPSPKKREKALDAISNYPSIRLIANWVERWMDRRIPLP------ 111

Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
                   +  + +   EG+ F   FA I      N++ G+ +  ++I +DE+LH  F  
Sbjct: 112 --------ERIIAFAALEGVIFTGSFAAIHYFTITNRLKGLRKANEWISKDEALHQRFA- 162

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
           + + +  ++    + +  Q++ + +L  A      + H+ +    V ++A     YM+  
Sbjct: 163 EAVYRYIVDVIKAFPRVSQERVQEILGSAIDAVSPFIHDCLRFKNVNIDAERMIGYMKNA 222

Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           A+     +G E  F    +   +M  +I +  + NFFE  V +Y +G
Sbjct: 223 ADGLAFSLGYEKFFNSDSS-LDYML-LIGMDNKTNFFEEVVADYAKG 267


>gi|30348565|emb|CAC84357.1| RRsmall [Saimiriine herpesvirus 2]
          Length = 305

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 111/307 (36%), Gaps = 28/307 (9%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
             E       N W P++VP+Q D+      + L + +    K    F   +E LV  N +
Sbjct: 16  FLELTKETWKNRWFPSQVPLQGDVCC---VDMLNERDLEFYKFLFTFLGMAEKLVNIN-I 71

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-GELFNMYREVPSITAKAN 160
             +     + +   Y   Q   E +H   +  I++ L  +   E+++   ++ + +A   
Sbjct: 72  EDLLSQFDSHDVSHYYAEQMAMENIHGKVYANILSMLFKNNITEVYSYACDIMNDSALQE 131

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
             L++             +  +     +  + +++ EG++F + F  I        M GI
Sbjct: 132 -KLKWLN----------GRVTEASDKAEKILLFLLVEGIFFISSFFSIGLFRVRGIMNGI 180

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
                YI RDE LH +    + N +         +  +     +  EA  +E  +     
Sbjct: 181 CLANDYIARDEMLHTSAAALLYNTMTK----SSERPSEDWIYKLFREAVEVEFKFIA-AK 235

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFE 337
             G   +N     Q++Q  A+R    I L P++        P           K  NFFE
Sbjct: 236 GHGVSLVNVHEIRQFLQATADRILESINLNPIYGSLPPENCPL----AYTSSTKSVNFFE 291

Query: 338 TRVTEYQ 344
              ++Y 
Sbjct: 292 RDNSDYT 298


>gi|330861133|emb|CBX71396.1| ribonucleoside-diphosphate reductase 2 subunit beta [Yersinia
           enterocolitica W22703]
          Length = 239

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 92/255 (36%), Gaps = 28/255 (10%)

Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQY 165
            S P         +F EAVH+ ++  I ++L +     E +    E   +  KA+  LQ+
Sbjct: 2   PSPPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSEENGPLQKKADIILQH 61

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
                                       V  E   FY+GF   +      ++   A+  +
Sbjct: 62  YNNDDPLKKKI---------------ASVFLESFLFYSGFYLPMYWSSRARLTNTADLIR 106

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I+RDE++H  +      +   +  +   +E +  +  +L +    EI Y         V
Sbjct: 107 LIIRDEAVHGYYIGYKFQKGLEKLDNNRRQEIKNFAFDLLQDLYDNEIHYTESLYDG--V 164

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTE 342
           G      ++++ + AN+    +G E LF  ++   NP    +   +  +  +FF    + 
Sbjct: 165 GWT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSPNADENHDFFSGSGSS 223

Query: 343 YQQGAEL-----KWD 352
           Y  G  +      WD
Sbjct: 224 YVIGKAVNTEDEDWD 238


>gi|156096873|ref|XP_001614470.1| ribonucleotide reductase small subunit [Plasmodium vivax SaI-1]
 gi|148803344|gb|EDL44743.1| ribonucleotide reductase small subunit, putative [Plasmodium vivax]
          Length = 335

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 101/313 (32%), Gaps = 39/313 (12%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           ++  +L        + P+KY   W  Y    +  W   +     D         L   ++
Sbjct: 17  NNDDILKENQFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFDKDKK------FLESIDK 70

Query: 80  LMIKRNLGFFASSESLVANNIVL------AIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
            M+ +             +           +   +  PE R +   Q   E +H   +  
Sbjct: 71  NMLVKLFELICFYSLKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYAC 130

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           I  +   D  +   + N   ++ S+  K  W              T   + +  F   L 
Sbjct: 131 IFETYIPDAKQKRVIINKVIQLDSVLKKQKW-------------LTELFETNIPFYNKLV 177

Query: 191 VFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
           + Y+    + F      ++   + N  +  +   ++ I RDE LH +F +   N +  + 
Sbjct: 178 LIYIS--KVLFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCNHLNNKL 235

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
            +       +        A  LE  ++ E +    + +     + +++++A+     +  
Sbjct: 236 KY-------ESLLDYFKMAVELEYQFSMEMLELSVLKIKKEQVKSFLEYLADTMLVNLKH 288

Query: 310 EPLFKYTENPFPW 322
              F  ++ PF W
Sbjct: 289 PKYFN-SKYPFTW 300


>gi|9631250|ref|NP_048031.1| small subunit of ribonucleotide reductase [Ateline herpesvirus 3]
 gi|4019286|gb|AAC95584.1| small subunit of ribonucleotide reductase [Ateline herpesvirus 3]
          Length = 305

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 105/313 (33%), Gaps = 27/313 (8%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
             E       N W P++VP+Q D+      + L + +    K    F   +E LV  N +
Sbjct: 16  FLELTKETWKNRWFPSQVPLQGDVCC---VDLLNERDIEFYKFLFTFLGMAEKLVNIN-I 71

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
             +     + +   Y   Q   E +H   +  I+  L  +       Y            
Sbjct: 72  EDLLGQFESHDISHYYAEQMAMENIHGKVYANILNMLFKNNITEVYSYAHDIMNDCALQE 131

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +++             +  +     +  + +++ EG++F + F  I  L     M GI 
Sbjct: 132 KIRWLN----------GRVTETSDKAEKILLFLLVEGIFFISSFFSIGLLRVRGIMNGIC 181

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
               YI RDE LH +    + N +         +  ++    +  EA  +E  +      
Sbjct: 182 LANDYIARDEMLHTSAAALLYNTMTK----PSERPPEKWIYELFREAVEVEFKFIS-AKV 236

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFET 338
            G   +N     Q++Q  A+R    I L P++        P           K  NFFE 
Sbjct: 237 HGVSHVNVHEIRQFLQATADRILESINLNPIYHSVPPANCPL----VYTSSTKSVNFFER 292

Query: 339 RVTEYQQGAELKW 351
             ++Y  G     
Sbjct: 293 DNSDY-TGTVTND 304


>gi|22550280|gb|AAN01603.1| ribonucleotide reductase small subunit [Human herpesvirus 2 strain
           G]
          Length = 342

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 114/308 (37%), Gaps = 27/308 (8%)

Query: 52  NHW--MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
           N W    TE+    D    +  + L++ E    +    F ++++ LV  N +  +     
Sbjct: 53  NRWLETETELVFVGDEE--EDVSKLSEGELGFYRFLFAFLSAADDLVTEN-LGGLSGLFE 109

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
             +   Y + Q   E VHS  +  I   L  +  +    Y             + + +  
Sbjct: 110 QKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVARTITHPAIRVKVDWLEA- 168

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                    +  + + + + F+  ++ EG++F   FA I  L   N +    +    I R
Sbjct: 169 ---------RVRECDSIPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLISR 219

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           DE++H      + N           K    +   +  EA  +EI +     P     L+ 
Sbjct: 220 DEAVHTTASCYIYNNYL----GGHAKPEAARVYRLFREAVDIEIGFIRSQAPTDSSILSP 275

Query: 290 ---PSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEY 343
               + E Y++F A+R    I ++PL+  +  P P   +   ++   K  NFFE R T Y
Sbjct: 276 GALAAIENYVRFSADRLLGLIHMQPLYSASA-PAPDASFPLSLMSTDKHTNFFECRSTSY 334

Query: 344 QQGAELKW 351
             GA +  
Sbjct: 335 A-GAVVND 341


>gi|221055321|ref|XP_002258799.1| Ribonucleotide reductase small subunit [Plasmodium knowlesi strain
           H]
 gi|193808869|emb|CAQ39572.1| Ribonucleotide reductase small subunit,putative [Plasmodium
           knowlesi strain H]
          Length = 335

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 101/313 (32%), Gaps = 39/313 (12%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           ++  +L        + P+KY   W  Y    +  W   +     D         L   ++
Sbjct: 17  NNDDILKENQFRWVMFPIKYKTFWSYYKEVESLFWTAEDYNFDKDKK------FLESIDK 70

Query: 80  LMIKRNLGFFASSESLVANNIVL------AIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
            M+ +             +           +   +  PE R +   Q   E +H   +  
Sbjct: 71  NMLVKLFELICFYSLKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYAC 130

Query: 134 IITSLGL---DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           I  +       +  + N   ++ S+  K  W              T   + +  F   L 
Sbjct: 131 IFETYIPDAKQKRTIINKVIQLDSVLKKQKW-------------LTELFETNIPFYNKLV 177

Query: 191 VFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
           + Y+    + F      ++   + N  +  +   ++ I RDE LH +F +   N +  + 
Sbjct: 178 LIYIS--KVLFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCNHLNNKL 235

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
            +       ++       A  LE  +A E +    + +     + +++++A+     +  
Sbjct: 236 KY-------ERLLDYFKMAVKLEYQFAIEMLDLSVLKIKKEQVKSFLEYLADTMLVNLKH 288

Query: 310 EPLFKYTENPFPW 322
              F  ++ PF W
Sbjct: 289 PKYFN-SKYPFTW 300


>gi|9629622|ref|NP_044898.1| ribonucleotide reductase subunit 2 [Murid herpesvirus 4]
 gi|6625623|gb|AAF19324.1|AF105037_56 60 [murid herpesvirus 4]
 gi|1850859|emb|CAA70275.1| ribonucleotide reductase, small subunit [Murid herpesvirus 4]
 gi|2317992|gb|AAB66450.1| ribonucleotide reductase small [murid herpesvirus 4]
          Length = 305

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 104/307 (33%), Gaps = 26/307 (8%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
             E       N W P+++P+  D+A       L + +R   K    F   +E LV  N +
Sbjct: 16  FLELTTETWKNMWFPSQIPLSSDVA---GIAQLNETDREFYKFLFVFLGLAERLVNFN-I 71

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
             + +  +  +   Y   Q   E +H   +  I+      +      Y            
Sbjct: 72  EDLVKEFNCHDATHYYAEQMAMENIHGKVYANILQLFFNGDMMKLKEYAVKVVADPTLKA 131

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L +            T+  + +   +  + +++ EG++F + F  I        + GI 
Sbjct: 132 KLDWLH----------TRVKNTKTRAEKVLIFLLIEGIFFISSFYSISLFRVRGMLNGIC 181

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
               YI +DE LH      + N +         +      + +  EA  +E ++      
Sbjct: 182 LANDYISKDELLHTRAAAVLYNSLI----PAKERPDAAWIKRLFQEAVEVEYSFIA-AKS 236

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFET 338
           K    +     ++++Q   +R    IG+EP++        P           K  NFFE 
Sbjct: 237 KNVTLVVPGEIKKFLQATCDRILQSIGVEPIYGSHAPVTCPL----SYNGCIKSVNFFER 292

Query: 339 RVTEYQQ 345
             T+Y  
Sbjct: 293 EGTDYST 299


>gi|9626016|ref|NP_040262.1| ribonucleotide reductase, small subunit [Saimiriine herpesvirus 2]
 gi|266917|sp|Q01038|RIR2_SHV21 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
           AltName: Full=Ribonucleotide reductase small subunit
 gi|66391|pir||WMBEP5 ribonucleoside-diphosphate reductase (EC 1.17.4.1) small chain -
           saimiriine herpesvirus 1 (strain 11)
 gi|60381|emb|CAA45683.1| ribonucleotide reductase, small subunit [Saimiriine herpesvirus 2]
 gi|330989|gb|AAA46136.1| ribonucleotide reductase small subunit [Saimiriine herpesvirus 2]
          Length = 305

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 108/307 (35%), Gaps = 28/307 (9%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
             E       N W P++VP+Q D+      + L + +    K    F   +E LV  N +
Sbjct: 16  FLELTKETWKNRWFPSQVPLQGDVCC---VDMLNERDLEFYKFLFTFLGMAEKLVNIN-I 71

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-GELFNMYREVPSITAKAN 160
             +     + +   Y   Q   E +H   +  I+  L  +   E+++   ++ + +A   
Sbjct: 72  EDLLSQFDSHDISHYYAEQMAMENIHGKVYANILNMLFKNNITEVYSYACDIMNDSA--- 128

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
                   L         +  +     +  + +++ EG++F + F  I        M GI
Sbjct: 129 --------LQEKLRWLNGRVTEASDKAEKILLFLLVEGIFFISSFFSIGLFRVRGIMNGI 180

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
                YI RDE LH +    + N +         +  +     +  EA  +E  +     
Sbjct: 181 CLANDYIARDEMLHTSAAALLYNTMTK----SSERPSEDWIYKLFREAVEVEFKFIA-AK 235

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFE 337
             G   +N     Q++Q  A+R    I L P++        P           K  NFFE
Sbjct: 236 GYGVSLVNVHEIRQFLQATADRILESINLNPIYGSLPPENCPL----AYTSSTKSVNFFE 291

Query: 338 TRVTEYQ 344
              ++Y 
Sbjct: 292 RDNSDYT 298


>gi|68068657|ref|XP_676239.1| ribonucleotide reductase small subunit [Plasmodium berghei strain
           ANKA]
 gi|56495842|emb|CAH97095.1| ribonucleotide reductase small subunit, putative [Plasmodium
           berghei]
          Length = 299

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 100/291 (34%), Gaps = 28/291 (9%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            + P+KY   W  Y    +  W   +     D      K  L   +++ + + L      
Sbjct: 1   VMFPIKYKTFWNYYKE-ESLFWTAEDHNFDKD------KPFLNSMDKITLSKLLELLYLH 53

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
                  I   +   +  PE R +   Q   E +H+  +  I  S   D  +        
Sbjct: 54  LCDEQAIITSKLLDIIQIPEGRAFYGFQMCMENIHNEVYACIFESYSSDSKQ-------- 105

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
                  +  L+Y       ++     +A+  F   L + Y+    + F  GF+ + S  
Sbjct: 106 --KKEIIDKVLKYESVFKKQNWLYSEFEANIPFYNKLILLYIS--KVLFNGGFSILASHC 161

Query: 213 R-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
           +  N +      ++ I RDE L  +F +   N +  +  +       +        A  L
Sbjct: 162 KENNILSCFTGVHEKIQRDEYLQGDFSVMCCNHLNNKLKY-------ESVLYYFKSAVEL 214

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
           E  +  + +   F+ +     +Q++Q++A+     +     F  ++ PF W
Sbjct: 215 EYNFCVDMLDFNFLKITKEQVKQFLQYLADTMLLNLKYPKHFN-SKYPFTW 264


>gi|294955280|ref|XP_002788462.1| ribonucleoside-diphosphate reductase small chain, putative
           [Perkinsus marinus ATCC 50983]
 gi|239903931|gb|EER20258.1| ribonucleoside-diphosphate reductase small chain, putative
           [Perkinsus marinus ATCC 50983]
          Length = 157

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           W    + +   + + A  +E  +  + +P G +G+NA    +Y++F+A+R    +G   +
Sbjct: 23  WETLTKNEQHFIKNSAVNVEREFITDALPVGLIGMNAELMGRYIEFVADRLLVALGYAKI 82

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVT 341
           +  + NPF WM+ +I L+ + NFFE RV 
Sbjct: 83  YN-SANPFDWMT-MISLQGKTNFFEKRVG 109



 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
          Y     + W   E+ +  DL  W++   LT +E+  IK 
Sbjct: 1  YKQHEASFWTAEEIDLGQDLRDWET---LTKNEQHFIKN 36


>gi|213021870|ref|ZP_03336317.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 277

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 97/236 (41%), Gaps = 23/236 (9%)

Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-- 171
             ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y   L    
Sbjct: 7   ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMT 66

Query: 172 ---------------PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
                           +     ++  ++    L     + E + FY  FA   +      
Sbjct: 67  SYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 125

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLE 272
           M G A+  + I RDE+LHL     ++N  +  +++P +    +E +Q+   +  +A   E
Sbjct: 126 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQE 185

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 186 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 241


>gi|50404173|gb|AAT76849.1| ribonucleotide reductase small subunit [Plasmodium falciparum]
          Length = 324

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 98/307 (31%), Gaps = 38/307 (12%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           ++  +L        + P+KY   W  Y    +  W   +     D               
Sbjct: 17  NNDEILKENKFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFDKDKQ-----------YL 65

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
             I +N+             I   +   +  PE R +   Q   E +H   +  I  +  
Sbjct: 66  ENIDKNMLVKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYACIFETYI 125

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            D  +   + N   E+ S+  K  W              T   +++  +   L + Y+  
Sbjct: 126 PDSKQKRVIINKVIELDSVLKKQKW-------------LTEIFESNIPYYNKLVLLYIS- 171

Query: 197 EGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
             + F      ++   + N  +  +   ++ I RDE LH +F +   N +  +  +    
Sbjct: 172 -KVLFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCNHLVNKLKY---- 226

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
              +        A  LE  ++ E +    + +       +++++ +     +     +  
Sbjct: 227 ---EHVLDYFKMAVDLEYQFSLEMLELNVLKIKKEQVRAFLEYLTDTMLTNLKYPKHYN- 282

Query: 316 TENPFPW 322
           ++ PF W
Sbjct: 283 SKYPFSW 289


>gi|258597037|ref|XP_001347439.2| ribonucleotide reductase small subunit, putative [Plasmodium
           falciparum 3D7]
 gi|254922415|gb|AAN35352.2| ribonucleotide reductase small subunit, putative [Plasmodium
           falciparum 3D7]
          Length = 335

 Score = 99.9 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 101/313 (32%), Gaps = 39/313 (12%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           ++  +L        + P+KY   W  Y    +  W   +     D         L + ++
Sbjct: 17  NNDEILKENKFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFDKDKQ------YLENIDK 70

Query: 80  LMIKRNLGFFASSESLVANNIVL------AIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
            M+ +             +           +   +  PE R +   Q   E +H   +  
Sbjct: 71  NMLVKLFELICFYSLKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYAC 130

Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           I  +   D  +   + N   E+ S+  K  W              T   +++  +   L 
Sbjct: 131 IFETYIPDSKQKRVIINKVIELDSVLKKQKW-------------LTEIFESNIPYYNKLV 177

Query: 191 VFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
           + Y+    + F      ++   + N  +  +   ++ I RDE LH +F +   N +  + 
Sbjct: 178 LLYIS--KVLFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCNHLVNKL 235

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
            +       +        A  LE  ++ E +    + +       +++++ +     +  
Sbjct: 236 KY-------EHVLDYFKMAVDLEYQFSLEMLELNVLKIKKEQVRAFLEYLTDTMLTNLKY 288

Query: 310 EPLFKYTENPFPW 322
              +  ++ PF W
Sbjct: 289 PKHYN-SKYPFSW 300


>gi|269861752|ref|XP_002650564.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220065950|gb|EED43491.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 106

 Score = 99.5 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
              ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G + ++  + NPF
Sbjct: 7   IEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPF 65

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
            +M E I L+ + NFFE R   YQ+G
Sbjct: 66  DFM-ENISLQGKTNFFERREANYQKG 90


>gi|221104331|ref|XP_002154681.1| PREDICTED: similar to ribonucleotide reductase small subunit,
           partial [Hydra magnipapillata]
          Length = 261

 Score = 99.1 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 96/243 (39%), Gaps = 26/243 (10%)

Query: 9   PIQAGEKRVNVDDKRMLNARSDVNQLLPL--KYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
              A +++    ++ +LN       + P+  K+   W+ Y    + +W   E+   +D  
Sbjct: 26  EYDANDEKKKDSEEEILNKDLSRLVVKPINSKHKVIWDLYKKQKDAYWTAEEIDFSNDRH 85

Query: 67  LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
            +   +    + +  IKR L FFA ++S+V  NI   + +     E       Q   E  
Sbjct: 86  DFLKVDK---NIQHFIKRILAFFAGADSIVNINIKKKLSKITVK-EAEIAYGFQQMMEDT 141

Query: 127 HSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           HS  +  ++  +  D     EL N ++ V SI     WA ++  +     ++        
Sbjct: 142 HSEVYADMLIKIITDPVERDELINAFKTVASIKRMIQWAQRWINSKRRIGYS-------- 193

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGR---ANKMVGIAEQYQYIMRDESLHLNFGID 240
                  V + +FEG+ F   FA I  L +    + M G+ +    I +DE +H  FG  
Sbjct: 194 ------IVVFCIFEGLMFSGAFAGIYWLKKILGEDIMKGLIQSNNLIAKDEGMHTIFGCV 247

Query: 241 VIN 243
           +  
Sbjct: 248 IYT 250


>gi|269866968|ref|XP_002652448.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220062479|gb|EED41609.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 100

 Score = 98.7 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
            + ++ EA  +E  +  E++P   +G+N     QY++F+A+R    +G + ++  + NPF
Sbjct: 1   MKDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPF 59

Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
            +M E I L+ + NFFE R   YQ+G
Sbjct: 60  DFM-ENISLQGKTNFFERREANYQKG 84


>gi|298256099|gb|ADI71328.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Epizootic haematopoietic necrosis virus]
          Length = 202

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 15/189 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 29  CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 88  DVEVGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +                +    L    +  V+ EG+  +  F  +L+  
Sbjct: 147 EEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193

Query: 213 RANKMVGIA 221
           R  KM G+ 
Sbjct: 194 RRGKMKGMG 202


>gi|298256109|gb|ADI71333.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Short-finned eel ranavirus]
          Length = 202

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 15/189 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 29  CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E        
Sbjct: 88  DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCEY------- 140

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
                       Y +      F      +    L       V+ EG+  +  F  +++  
Sbjct: 141 -------QAFADYEEMTDKLDFMREMDCSTLPGLARSLFRAVLNEGVSLFAAFVMLMTFQ 193

Query: 213 RANKMVGIA 221
           R  KM G+ 
Sbjct: 194 RRGKMKGMG 202


>gi|32709417|gb|AAP86727.1| NrdB [Enterobacteria phage LZ2]
          Length = 313

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 112/319 (35%), Gaps = 43/319 (13%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    E    + +  W P EV +  
Sbjct: 1   MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHRVFEELTEKSLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-------------- 169
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +              
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKTREWENAKEFV 174

Query: 170 ------SSPSFTTGTKDADQEFLQDLFVFYVV--------FEGMWFYTGFAQILSLGRAN 215
                     F        +   +   +  +          E + FY  FA   +  +  
Sbjct: 175 ELSKESPDADFRLNRAIKQEAEAKRALMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234

Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
             M G A+  ++I RDE LHL     +I Q+++           +E +Q++  +  E   
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNR 294

Query: 271 LEIAYAHETMPKG-FVGLN 288
            E  +A      G   GLN
Sbjct: 295 QEKDWAVHLFKDGDVPGLN 313


>gi|298256097|gb|ADI71327.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [European catfish virus]
 gi|298256101|gb|ADI71329.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [European sheatfish virus]
          Length = 202

 Score = 97.5 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 15/189 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HWM TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 29  CFKPFRYAWAEDIRTKHEKVHWMETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E        
Sbjct: 88  DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCEY------- 140

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
                       Y +      F      +    L       V+ EG+  +  F  +L+  
Sbjct: 141 -------QAFADYEEMTDKLDFMREMDCSTLPGLARSLFRAVLNEGVSLFAAFVMLLTFQ 193

Query: 213 RANKMVGIA 221
           R  KM G+ 
Sbjct: 194 RRGKMKGMG 202


>gi|225619347|ref|YP_002720573.1| ribonucleoside-diphosphate reductase subunit beta [Brachyspira
           hyodysenteriae WA1]
 gi|225214166|gb|ACN82900.1| ribonucleoside-diphosphate reductase, beta subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 356

 Score = 97.2 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 135/352 (38%), Gaps = 19/352 (5%)

Query: 16  RVNVDDKRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
                ++++         ++  + +  A +   ++  N W   EV  + D   +   + L
Sbjct: 7   DKKPQNEKIFFGDFGHYLRIDSVSHEVARKLKEASEGNTWFSKEVDYKSDKTRF---SSL 63

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
            +D +   K N+ +    +S V +     + R +++        R A EE +H+ ++ Y 
Sbjct: 64  PEDAQRAFKLNIAYQTLMDSGVTSGFSSILNRIVTSSIWSILYARIAIEENIHAESYSYG 123

Query: 135 ITSLGLDEG----ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
           ++ +   E     +L      V     K          L +   +  T D  ++ +  L 
Sbjct: 124 LSEVFGHEATDTLDLVYNDEFVKHRMEKEVELFGNVDELCNLENSPATLDEKKQAVLKLL 183

Query: 191 VFYVVFEGMWFYTGFAQILSLGRA--NKMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKI 247
           +   + E + F   F    ++     N + G  +  + I  DE + H+  G +V+N ++ 
Sbjct: 184 IGIYLLESVKFPFSFLVTFTINNNYDNAIAGFTKTIKLIAHDELNTHVPTGKNVMNILRK 243

Query: 248 ENPHLWTKEFQ-----QKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIAN 301
           EN   +T  F+     + +R M       EI +A          G+N+   E ++++ A 
Sbjct: 244 ENEQGFTHLFKSGWFNETARAMAEFTVNEEIKWAKYLFDGYQVAGINSSVSEHFIKYWAG 303

Query: 302 RRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKW 351
            R   +G+E  +   + +   W +   D+ K      ET  T YQ+GA    
Sbjct: 304 VRLRDLGVESPYNEKKSDVIDWFNSYRDINKQNAALQETTNTSYQKGALKND 355


>gi|298256093|gb|ADI71325.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Bohle iridovirus]
          Length = 202

 Score = 96.4 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 15/189 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 29  CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 88  DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +                +    L    +  V+ EG+  +  F  +L+  
Sbjct: 147 GEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193

Query: 213 RANKMVGIA 221
           R+ KM G+ 
Sbjct: 194 RSGKMKGMG 202


>gi|55978391|ref|YP_145447.1| ribonucleoside-diphosphate reductase, beta subunit [Thermus
           thermophilus HB8]
 gi|55773564|dbj|BAD72004.1| ribonucleoside-diphosphate reductase, beta subunit [Thermus
           thermophilus HB8]
          Length = 294

 Score = 96.0 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 18/296 (6%)

Query: 55  MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
           M TE   Q DL          + ER +++R L   A  E L        +Y     PE  
Sbjct: 1   MHTEFSFQSDLQD---HALADEKERSLVERALLAIAQVE-LAVKLFWARVYDRFPKPEIA 56

Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
           +  L  A  E  H++ + +      L   E F    E  S       AL         + 
Sbjct: 57  EVGLTFAESEVRHANAYAH--LLELLGLEEAFGQALEGASALRDRAQAL-------GEAL 107

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESL 233
                   +E+   LF+F    E +  ++ F  +++L R   +  GI+   +   ++E++
Sbjct: 108 RRAQGKDLREYALALFLFSAFTEHVSLFSQFYVLMALNRRGNRYKGISNAIEATSKEENV 167

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL-NAPSC 292
           H  FG++++  ++ E+P    + FQ+++  +       E A        G   L      
Sbjct: 168 HGLFGVELLRLLRTEHPEALGEGFQEEALRLAQGLFRAEEALLDWLFSAGEPALVGHRET 227

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQ 345
            ++++   N+     GL P+F   E       W +  +   KE +FF  R   Y +
Sbjct: 228 LEFLKGRYNQVLALHGLPPVFSVDEKALRDTEWFTLELLADKEVDFFNKRSVAYAR 283


>gi|298256095|gb|ADI71326.1| ribonucleoside diphosphate reductase beta subunit-like protein [Cod
           iridovirus/15/04.11.92/DNK]
 gi|298256103|gb|ADI71330.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Pike-perch iridovirus]
          Length = 202

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 15/189 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 29  CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 88  DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +                +    L    +  V+ EG+  +  F  +L+  
Sbjct: 147 EEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193

Query: 213 RANKMVGIA 221
           R+ KM G+ 
Sbjct: 194 RSGKMKGMG 202


>gi|262285102|gb|ACY41130.1| ribonucleotide reductase subunit 2 [Wood mouse herpesvirus]
          Length = 305

 Score = 96.0 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 101/307 (32%), Gaps = 26/307 (8%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
             E       N W P+++P+  D+A       L   +R   K    F   +E LV  N +
Sbjct: 16  FLELTTETWKNRWFPSQIPLSSDVA---GIAQLNATDREFYKFLFVFLGLAEKLVNFN-I 71

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
             + +  +  +   Y   Q   E +H   +  I+      +      Y            
Sbjct: 72  EDLVKEFNCHDATHYYAEQMAMENIHGKVYANILQLFFNGDMMKLKEYAVKVVADPTLKA 131

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            L +            T+  + +   +  + +++ EG++F + F  I        + GI 
Sbjct: 132 KLDWLH----------TRVKNTKTRAEKVLIFLLIEGIFFISSFYSISLFRVRGMLNGIC 181

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
               YI +DE LH      + N +         +      + +  EA  +E A+      
Sbjct: 182 LANDYISKDELLHTRAAAVLYNTLI----PAKERPDPAWIKRLFQEAVEVEYAFIA-AKS 236

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFET 338
           K    +     ++++Q   +R    IG+  L+        P           K  NFFE 
Sbjct: 237 KNVTLVVPGEIKRFLQATCDRILQSIGVGALYGSHAPVTCPL----SYNGCIKSVNFFER 292

Query: 339 RVTEYQQ 345
             T+Y  
Sbjct: 293 EGTDYST 299


>gi|298256105|gb|ADI71331.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Ranavirus maxima/9995205/DNK]
          Length = 202

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 15/189 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA +        HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 29  CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E +  + + 
Sbjct: 88  DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +T K ++  +                +    L    +  V+ EG+  +  F  +L+  
Sbjct: 147 EEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193

Query: 213 RANKMVGIA 221
           R+ KM G+ 
Sbjct: 194 RSGKMKGMG 202


>gi|13095637|ref|NP_076552.1| ribonucleotide reductase small subunit [Bovine herpesvirus 4]
 gi|12802587|gb|AAK07979.1|AF318573_59 ribonucleotide reductase small subunit [Bovine herpesvirus 4]
          Length = 305

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 107/309 (34%), Gaps = 36/309 (11%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
            N W P++V +  D+   KS   L   +R   K    F   +ESLV  N +  I +   +
Sbjct: 25  QNRWFPSQVSLHGDVNHLKS---LNVQDREFYKFLFTFLGMAESLVNFN-IEDIIKQFES 80

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE----GELFNMYREVPSITAKANWALQYT 166
            +   Y   Q   E +H+  ++ I+     ++         M     ++  K +W     
Sbjct: 81  HDMLHYYTEQMAMENIHARMYENILNMFFNNDPAEMYRYTQMIINDRALIRKLDWLHSRI 140

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
           +++S+ +                 + +++ EG++F + F  I  L       G+     Y
Sbjct: 141 KSVSNKAEK--------------VLLFLLVEGIFFVSSFYSIGLLRVRGMFNGVCLANDY 186

Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
           I RDE LH      + N +                  +  EA  +E  +       G   
Sbjct: 187 ISRDELLHTRAAALLYNTMVSGADKPHML----WVHNLFKEAVEVEHEFIL-VKSSGVSA 241

Query: 287 LNAPSCEQYMQFIANRRCHQIGL---EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
           +N      +++  A+R    I L          + P           K  NFFE   ++Y
Sbjct: 242 VNVDDIRSFLEATADRILKSINLPPIYGTPPPPKCPL----VYTGCVKNVNFFERDNSDY 297

Query: 344 QQGAELKWD 352
              + +K D
Sbjct: 298 T--SSIKDD 304


>gi|139472853|ref|YP_001129417.1| ORF60 [Human herpesvirus 8]
 gi|1718316|gb|AAC57145.1| ORF 60 [Human herpesvirus 8 type M]
 gi|2246534|gb|AAB62659.1| ORF 60 [Human herpesvirus 8]
 gi|87196889|gb|ABD28915.1| ORF60 [Human herpesvirus 8]
 gi|261853541|gb|ACY00463.1| ORF60 [Human herpesvirus 8]
 gi|312275208|gb|ADQ57945.1| core gene UL40 family protein [Human herpesvirus 8]
          Length = 305

 Score = 95.2 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 105/298 (35%), Gaps = 26/298 (8%)

Query: 51  NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
            N W P+++P+  D++       L+D ++   +    F   +E LV  N +  +  + ++
Sbjct: 25  QNRWFPSQIPLHLDVSHVHQ---LSDADKDFYRFLFTFLGMAERLVNFN-IEDLVTNFNS 80

Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
            +   Y   Q   E +H   +  I+     +       Y     +       L++  +  
Sbjct: 81  HDVAHYYAEQVAMENIHGVVYANILKIFFNNSRGELLAYAAKIILDPALCEKLEWLHSRV 140

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
             + T   K           + +++ EG++F + F  I        M G+     YI RD
Sbjct: 141 RKATTKAQK----------ILMFLIVEGIYFISSFYSISLCRVRGIMPGVCLANDYISRD 190

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E LH      + N +          E Q     +  EA  +EI +       G   +N  
Sbjct: 191 ELLHTKAASMLYNTMVEIQEKPSHAEVQA----LFREAVNIEIRFIQ-AKAAGVTLVNVV 245

Query: 291 SCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
              ++++  A+R    I + P+F        P           K  NFFE   ++Y  
Sbjct: 246 DIRRFLEATADRILRDIFVPPIFGTPPPEACPL----SYTGSFKAVNFFERDNSDYTT 299


>gi|254992907|ref|ZP_05275097.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
           monocytogenes FSL J2-064]
          Length = 229

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 15/217 (6%)

Query: 24  MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
           ++N  +  +     + Y   +  Y     N+W+P EV M+ D   +     L++ E+   
Sbjct: 25  IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81

Query: 83  KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
              +G  A+ +S     I   I  ++++P         A +E +H+ ++ Y++ S+    
Sbjct: 82  DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
           ++  +F + R  P+I  +    +       +        +   E L    +   + EG+ 
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGIN 192

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
           FY+GFA   +L R NKM G  +   +I RDE  H  F
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKF 229


>gi|298256107|gb|ADI71332.1| ribonucleoside diphosphate reductase beta subunit-like protein
           [Rana esculenta virus]
          Length = 202

 Score = 94.1 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 15/189 (7%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              P +Y WA          HW+ TE+ ++DD+  WKS   +T  E+  +   L  F   
Sbjct: 29  CFKPFRYAWAEAIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V    +  + +     E R  L   A  EA+H   +  +  +LG+ + E        
Sbjct: 88  DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCEY------- 140

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
                       Y +      F      +    L    +  V+ EG+  +  F  +L+  
Sbjct: 141 -------QAFADYEEMTDKLDFMREMDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193

Query: 213 RANKMVGIA 221
           R+ KM G+ 
Sbjct: 194 RSGKMKGMG 202


>gi|311992719|ref|YP_004009587.1| NrdB ribonucleotide reductase beta subunit [Acinetobacter phage
           Ac42]
 gi|298684502|gb|ADI96463.1| NrdB ribonucleotide reductase beta subunit [Acinetobacter phage
           Ac42]
          Length = 372

 Score = 93.7 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 105/313 (33%), Gaps = 20/313 (6%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           ++   W+ Y       W   +      L  +K            +  N+ +   ++S+ +
Sbjct: 36  RFDKIWDLYKEMKALDWDEQDFDFAQCLTDFKRVPK---KVADTMIYNIMWQWETDSVAS 92

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
               + I  +    E     LR    E VH  T+  I+        E+            
Sbjct: 93  QVPFVLIAPYDPCSEIVAAELRINDNETVHGATYSEIVKLSFDMPKEVLKELLAKTEAHR 152

Query: 158 KANWA-------LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
           + +          + +  L+    T  +++     +   +    V E + F   F    +
Sbjct: 153 RLHVVGTELAALKRRSVELAYHGSTHFSEEEKTIDMMLFYYLMYVLERVQFMISFGVTFT 212

Query: 211 LGRANKMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEA 268
           +  +     I    + I +DE  +H  + ++V+ ++   E+      + + K   +L E 
Sbjct: 213 ICESGVFQAIGSAVKKICQDEFEIHCEYRLEVLKELLASEHGQAAFAKLRPKMIKILKEV 272

Query: 269 TLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEP-----LFKYTENPFP 321
              EI +A      G   VG+NA    Q+  F A       G        +F   ENP P
Sbjct: 273 IESEITWAKFLFEDGQAIVGMNADVLIQWALFNAKAVAQNFGFTEEELGFVFP-EENPMP 331

Query: 322 WMSEVIDLKKEKN 334
            +   I++ K +N
Sbjct: 332 HLESWININKTQN 344


>gi|189490606|ref|YP_001957176.1| hypothetical ribonucleotide reductase beta subunit [Pseudomonas
           phage 201phi2-1]
 gi|164609671|gb|ABY63280.1| hypothetical ribonucleotide reductase beta subunit [Pseudomonas
           phage 201phi2-1]
          Length = 386

 Score = 93.3 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 124/357 (34%), Gaps = 32/357 (8%)

Query: 1   MANNTGLS-PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
           M+    L   I    K      + +L     +   +   +   ++ Y    +  W   E 
Sbjct: 1   MSKKVDLPIKIFNNTKTDYNSPEIILGQEPGLFDSIHNHHPALFDLYKRLRSMDWDENEF 60

Query: 60  PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
           P  D L  +++ +        M+ + L +   +++  +  IV  +   L++       +R
Sbjct: 61  PYGDCLHEFETCDK---QFYDMMIKTLAWQWEADATASRAIVNILGPVLTDSRVWAGYVR 117

Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS--FTTG 177
               E +H+ T+  I+ +   D   +      V     +     +        S  +   
Sbjct: 118 INDNENLHALTYSEIVRNSFKDPQVILEEILRVEEAQQRLVTVAKIMGEAHDASHAYACR 177

Query: 178 TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES-L 233
           T   DQ     +F F++     E + F   FA   +LG+      I    Q I +DE  +
Sbjct: 178 TIPNDQALYNKIFKFFMALYYLERIQFMASFAVTFALGKLGMFQPIVMGVQKIAQDEYEI 237

Query: 234 HLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAP 290
           H  FG +VI  +   E   +  ++ + +   +  E  + E+ +      +G    G+   
Sbjct: 238 HAQFGQEVIKALLKTERGLIAYEDTKAECIKLFWEILMSEVNWLIYLFSEGRELPGVTLK 297

Query: 291 SCEQYMQFIAN---------------RRCHQI---GLEPLFKYTENPFPWMSEVIDL 329
              Q++ F  N                R   +   G E  F   +NP P+M E +DL
Sbjct: 298 KMVQWVLFNCNAAGTFTGHKDGITDEMRAEFLATTGFELEFP-DKNPLPYMVEYLDL 353


>gi|281207436|gb|EFA81619.1| hypothetical protein PPL_05610 [Polysphondylium pallidum PN500]
          Length = 1292

 Score = 92.9 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 86/227 (37%), Gaps = 26/227 (11%)

Query: 61  MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
           + +D+  W+    L D+ER +I   LGFF S   ++  NI+      +  PE R +   Q
Sbjct: 60  LLNDVRDWQC--KLDDNERYLISNILGFFVSIAGIINENIITHFMSEVQIPEARTFYSMQ 117

Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
              E + S  +  +I +   D  E   +FN    +P +  K  W L+      S +    
Sbjct: 118 IAMENIQSEKYSLLIDAYIKDTDEKSKIFNAIESIPCVKRKCEWLLKSMNNSKSLA---- 173

Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
                     +  + +   E + +   F  IL   + + M  ++E Y +I+ +E  H  F
Sbjct: 174 ----------ERLIAFAAVESILYSASFCVILWFHKRSLMPKLSEYYSFIVSNEYTHCEF 223

Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           G  + +++  +          +   +++ +A   E            
Sbjct: 224 GRLLYSKLINKLDT-------EMIESIIRDAVDCEKQIMESETGDSI 263


>gi|269865992|ref|XP_002652118.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063125|gb|EED41939.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 134

 Score = 92.9 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
           IK  L FFA+S+ +V  N+V      +   E + +   Q   +  
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAMKTS 127


>gi|226349643|ref|YP_002776757.1| hypothetical protein ROP_pROB01-04060 [Rhodococcus opacus B4]
 gi|226245558|dbj|BAH55905.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 326

 Score = 92.5 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 15/269 (5%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--N 99
           A + +       W P  +    D   +    GL+D+E+ +       F + E  VA    
Sbjct: 29  AMKLFRKGNKKFWDPEAIDFSQDAQDF---AGLSDEEKRLTCILAAHFIAGEESVAQDLQ 85

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             ++            YL +  FEEA H   F+    ++GL      + Y +      + 
Sbjct: 86  PFMSAMAAEGRLADEAYLTQFTFEEAKHMQAFRLWFDAVGLSSD--LHEYVDYSEPYQRI 143

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMV 218
                +T+ L    +   T  +    ++    +  V EG    TG+     + +  N + 
Sbjct: 144 -----FTEELPKSLYALTTDPSPAAQIRASVTYNHVVEGCLALTGYYAWAKVCKSRNILP 198

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           G+ E  ++I  DE  H+ +G     +    +   W  +   +    L E  L  I    +
Sbjct: 199 GMQEVIKHIGDDERRHMAWGTFTCRRHVAADDRNW--DVVDERMQELLEPALQLIVRIFD 256

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           T  +   G+       Y     NRR   I
Sbjct: 257 TFDEIPFGITIDEMTDYGMDKLNRRLESI 285


>gi|269864086|ref|XP_002651449.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220064500|gb|EED42605.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 130

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
           IK  L FFA+S+ +V  N+V      +   E + +   Q   +  
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAMKTS 127


>gi|156086328|ref|XP_001610573.1| ribonucleoside-diphosphate reductase beta subunit [Babesia bovis
           T2Bo]
 gi|154797826|gb|EDO07005.1| ribonucleoside-diphosphate reductase beta subunit, putative
           [Babesia bovis]
          Length = 329

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 101/291 (34%), Gaps = 35/291 (12%)

Query: 17  VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
           +   ++ +L   ++   + P+ Y   W  Y    N+ W   +    ++     + + L  
Sbjct: 16  LEQHNETLLKENANRWVMFPIHYDALWAMYKEIENSFWAAEDFRFANERD---TYSSLPT 72

Query: 77  DERLMIKRNLGFFASSESLVANNIV---LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           + R ++ + + +    +           L +      PE R +   Q   E +HS  F  
Sbjct: 73  ELRQLVVKLISYHNRLDRSEVARPATITLDLLADTQIPEARAFYGFQVSYENIHSELFGI 132

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
           + +++            +VP   AK  W              T    +   F   + +  
Sbjct: 133 MSSAIPGT--------IDVPEADAKIEW-------------LTRNLTSTSCFYIKVILQC 171

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
           +         G      L  + K+  +      + +D S+HL F +  +  +K+      
Sbjct: 172 ISKAIFRSAFG-ILADYLRNSKKLPTLLSALDTVAKDVSIHLKFAMAALEHLKL------ 224

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
            +  ++    +L+ A  LE+AY    +P   +GL+     QY++   N+  
Sbjct: 225 -RPTRETVMELLNSAYDLEMAYCRSVLPMDHMGLSEYHLSQYIKNNVNQCL 274


>gi|300870141|ref|YP_003785012.1| ribonucleotide-diphosphate reductase subunit beta [Brachyspira
           pilosicoli 95/1000]
 gi|300687840|gb|ADK30511.1| ribonucleotide-diphosphate reductase beta subunit [Brachyspira
           pilosicoli 95/1000]
          Length = 359

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 132/355 (37%), Gaps = 20/355 (5%)

Query: 14  EKRVNVDDKRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           EK+ N++++R+         ++  + +  A +   ++  N W   EV  + D   +   +
Sbjct: 7   EKKPNLENERIFFGDFGHYIRIDSVSHEIARKLKEASEGNTWFSKEVDYKSDKTRF---S 63

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L +D +   K N+ +    +S V +     + R +++        R A EE +H+ ++ 
Sbjct: 64  SLPEDAQRAFKLNIAYQTLMDSGVTSGFSSILNRIVTSSIWSILYSRIAIEEVIHAESYS 123

Query: 133 Y-IITSLGLDEGELFNMYREVPSITAKANWALQYT---QTLSSPSFTTGTKDADQEFLQD 188
           Y +    G    E  ++      +  +    ++       L +   +  T +  ++ +  
Sbjct: 124 YGLSEVFGHLATETLDLVYNDEFVKHRMEKEVELFSCVDDLCNIENSNATLEEKKKAVLK 183

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGR--ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
           L     + E + F   F    ++     + + G  +  + I  DE          +  I 
Sbjct: 184 LLTGIYLLESVKFPFSFLVTFTINNSYNDAITGFTKTIKLIAHDELNTHVPTGKNVIGIL 243

Query: 247 IENPHLWTKEFQQ--KSRTMLHEATLL----EIAYAHETM-PKGFVGLNAPSCEQYMQFI 299
            ++ +   KE         M  E T      EI +A      K   G+N+   E ++++ 
Sbjct: 244 RKDANQGFKELFDSGWYNDMAKEMTEFTVNEEIKWAKYLFDGKEVSGINSSVSEHFIKYW 303

Query: 300 ANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKW 351
           A  R   +G+E  +  +   +   W +   D+ K      ET  T YQ+GA    
Sbjct: 304 AGVRLKDLGVETEYLKEPKSDIIDWFNAYRDINKQNAALQETTNTSYQKGALKND 358


>gi|221783|dbj|BAA00748.1| UL40 [Human herpesvirus 2]
          Length = 262

 Score = 91.8 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 100/281 (35%), Gaps = 27/281 (9%)

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           E    +    F ++++ LV  N +  +       +   Y + Q   E VHS  +  I   
Sbjct: 1   ELGFYRFLFAFLSAADDLVTEN-LGGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLV 59

Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           L  +  +    Y             + + +           +  + + + + F+  ++ E
Sbjct: 60  LFHNNDQARRAYVARTINHPAIRVKVDWLEA----------RVRECDSIPEKFILMILIE 109

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L   N +    +    I RDE++H      + N           K  
Sbjct: 110 GVFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYL----GGHAKPE 165

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNA---PSCEQYMQFIANRRCHQIGLEPLF- 313
             +   +  EA  +EI +     P     L+     + E Y++F A+R    I ++PL+ 
Sbjct: 166 AARVYRLFREAVDIEIGFIRSQAPTDSSILSPGALAAIENYVRFSADRLLGLIHMQPLYS 225

Query: 314 ---KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
                   P      ++   K  NFFE R T Y  GA +  
Sbjct: 226 APAPDASFPLS----LMSTDKHTNFFECRSTSYA-GAVVND 261


>gi|300362837|ref|ZP_07059008.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri JV-V03]
 gi|300353073|gb|EFJ68950.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri JV-V03]
          Length = 275

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 93/291 (31%), Gaps = 28/291 (9%)

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
           N L+DD + +I R        ++  ++   +A  ++      +      AF  AVH+ ++
Sbjct: 2   NQLSDDWQQLITRTFTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSY 61

Query: 132 QYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
             I ++L   E   E         ++ A+A   + Y                        
Sbjct: 62  GTIFSTLCTSEQIEEAHEWVVNNDALQARAKAVIPYYTGND---------------PLKS 106

Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
            V   +  G   Y GF     L    K+   A+  + I+RD+ +H  +          + 
Sbjct: 107 KVAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKL 166

Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                 E ++     L +   LE  Y HE      +         +  + A +    +G 
Sbjct: 167 APAKQAEMKKFVFDFLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGY 223

Query: 310 EPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
           +  F   E   +P  +        +  +FF    + Y  G      +  WD
Sbjct: 224 DSPFTAEETYISPEVFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 274


>gi|213612729|ref|ZP_03370555.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 234

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 83/231 (35%), Gaps = 22/231 (9%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
           +II ++  D   +F+       I  +A     Y   L                    +  
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKTVV 184

Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
              ++  ++    L     + E + FY  FA   +      M G A+  + 
Sbjct: 185 VNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRL 234


>gi|71034151|ref|XP_766717.1| ribonucleotide-diphosphate reductase small subunit [Theileria parva
           strain Muguga]
 gi|68353674|gb|EAN34434.1| ribonucleotide-diphosphate reductase small subunit, putative
           [Theileria parva]
          Length = 326

 Score = 91.4 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 92/303 (30%), Gaps = 38/303 (12%)

Query: 20  DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
           +D+ +L    +   + P+++   W  Y    NN W   +    DDL    S   L     
Sbjct: 20  NDEILLKENHNRWVMFPIEHDTFWIMYKEVENNFWAAEDFIFSDDL---NSLFKLPKPLF 76

Query: 80  LMIKRNLGFFASSE---SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
             +   L F  + +        ++ L +   +   E R +   Q  +E +H+ T   +  
Sbjct: 77  NSLFHLLSFHINLDNKWVCRPVDMTLELLSEVQIAEARAFYGFQLTDENIHTETIGTMFQ 136

Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
                   L N   +      K  W                 +    +      +  V+ 
Sbjct: 137 --------LLNQPLDNTIGQDKITW--------------LYNECEKNKCFFKRVLLVVIS 174

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           + ++  T       L +   +         + +D  +H  F       +         K 
Sbjct: 175 KLLFTATFNILRDYLVKEKLLPTFTLALDAVSKDRHIHTRFAHCTFTLL-------QHKM 227

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA---PSCEQYMQFIANRRCHQIGLEPLF 313
            +     ++ EA  LE  +A++ +P   + +          YM+++ N      G   L+
Sbjct: 228 LESDVVQLIKEALKLEYDFANKFLPLSLMAITQMLTDVLRGYMEWVGNNVLMVCGYRTLY 287

Query: 314 KYT 316
              
Sbjct: 288 SSD 290


>gi|296127719|ref|YP_003634971.1| ribonucleotide reductase [Brachyspira murdochii DSM 12563]
 gi|296019535|gb|ADG72772.1| ribonucleotide reductase [Brachyspira murdochii DSM 12563]
          Length = 357

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 135/353 (38%), Gaps = 20/353 (5%)

Query: 16  RVNVDDKRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
               + +++         ++  + +  A +   ++  N W   EV  + D   +   + L
Sbjct: 7   DKKPESEKIFFGDFGHYIRIDSVSHEIARKLKEASEGNTWFSKEVDYKSDKTRF---SSL 63

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY- 133
            +D +   K N+ +    +S V +     + R +++        R A EE +H+ ++ Y 
Sbjct: 64  PEDAQRAFKLNIAYQTLMDSGVTSGFSSILNRIVTSSIWSILYARIAIEENIHAESYSYG 123

Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQ---YTQTLSSPSFTTGTKDADQEFLQDLF 190
           +    G    E  ++      +  +    ++       L +   +  + D  ++ +  L 
Sbjct: 124 LSEVFGHQASETLDLVYNDEFVKHRMEKEVELFGNVDELCNLENSNASLDEKKQAVLKLL 183

Query: 191 VFYVVFEGMWFYTGFAQILSLGR--ANKMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKI 247
           +   + EG+ F   F    ++     N + G  +  + I  DE ++H+  G +++  ++ 
Sbjct: 184 IGIYLLEGIKFPFSFLVTFTINNSYDNAIAGFTKTIKLIAHDELNVHVPTGKNLMTILRK 243

Query: 248 ENPHLWTKEFQ-----QKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIAN 301
           E    ++  F+       +R M       EI +A      K   G+N+   E ++++ A 
Sbjct: 244 EAHQGFSHLFKNGWFYDTARAMTEYTVNEEIKWAKYLFDGKEVSGINSSVSEHFIKYWAG 303

Query: 302 RRCHQIGLEPLF--KYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKW 351
            R   I +E  +  +   +   W +   D+ K      ET  T YQ+GA    
Sbjct: 304 IRLKDIDVETEYLSEKKSDIIDWFNSYRDINKQNAALQETTNTSYQKGALKND 356


>gi|256844583|ref|ZP_05550068.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256613124|gb|EEU18328.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
          Length = 276

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 87/259 (33%), Gaps = 20/259 (7%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W   N L+DD + +I R 
Sbjct: 25  GKNMRAINWNDIKDEKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 81

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 82  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 141

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y                         V   +  G   Y 
Sbjct: 142 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 186

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 187 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 246

Query: 264 MLHEATLLEIAYAHETMPK 282
            L +   LE  Y HE    
Sbjct: 247 FLDKLIDLEKKYLHELYDD 265


>gi|295695705|ref|YP_003588943.1| ribonucleotide reductase [Bacillus tusciae DSM 2912]
 gi|295411307|gb|ADG05799.1| ribonucleotide reductase [Bacillus tusciae DSM 2912]
          Length = 296

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 111/268 (41%), Gaps = 28/268 (10%)

Query: 34  LLPLKYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           +LP++       Y  A     W P E+    D   WK+   LT D++ +I +    F + 
Sbjct: 16  ILPMR------LYHKAKKLGIWDPKELDFTQDREDWKT---LTTDQKELILKLCSLFQAG 66

Query: 93  ESLVANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
           E  V  +   ++ +       E   YL    FEEA H+ +F+  +  +          YR
Sbjct: 67  EEAVTRDLLPLIRVVASEGRLEEEMYLTTFLFEEAKHTESFRLFLDEV--------AEYR 118

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-QIL 209
              +I  K N+   + + L           + +   +    + ++ EG+   TG+     
Sbjct: 119 GDLAIYHKENYKKVFYEYLPQAMERLIHDPSPEAQAEASVTYNMIVEGVLAETGYHGFSN 178

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
           +LGR  KM G+ +  +Y+ RDES H+ +G  +++++  EN ++W     +     + E  
Sbjct: 179 ALGRQGKMPGLLKAVEYLKRDESRHIGYGTYLLSRLIAENENVW-----KTINNKMGELL 233

Query: 270 LLEIAYAHETMPKG--FVGLNAPSCEQY 295
              I   +E + +G    GL+     QY
Sbjct: 234 PYAIGVVNELLGEGPHPFGLDPEEFVQY 261


>gi|269862477|ref|XP_002650854.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220065515|gb|EED43201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 122

 Score = 90.2 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 3/100 (3%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
           IK  L FFA+S+ +V  N+V      +   E + +   + 
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGSKC 122


>gi|256843983|ref|ZP_05549470.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256613888|gb|EEU19090.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
          Length = 287

 Score = 89.5 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 86/259 (33%), Gaps = 20/259 (7%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
                      +K     E +     N W+P ++P+ +D++ W     L+DD + +I R 
Sbjct: 36  GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSWNQ---LSDDWQQLITRT 92

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
                  ++  ++   +A  ++      +      AF  AVH+ ++  I ++L   E   
Sbjct: 93  FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 152

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           E         ++ A+A   + Y                         V   +  G   Y 
Sbjct: 153 EAHEWVVNNDTLQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 197

Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           GF     L    K+   A+  + I+RD+ +H  +          +       E ++    
Sbjct: 198 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 257

Query: 264 MLHEATLLEIAYAHETMPK 282
            L +   LE  Y HE    
Sbjct: 258 FLDKLIDLEKKYLHELYDD 276


>gi|294998842|gb|ADF58156.1| ribonucleoside-diphosphate reductase beta subunit [Pseudomonas
           phage JG004]
          Length = 348

 Score = 89.5 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 104/308 (33%), Gaps = 26/308 (8%)

Query: 38  KYGWAWEKYLSA-CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           KY    E          W  +E+ ++ D    K    L   +   +K  L  F   E +V
Sbjct: 30  KYPVIVELANQQLEEKLWFSSEMKVELDKLNLK--FKLEPHQLHAVKTVLQLFLKYELIV 87

Query: 97  ANNIVL-AIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
                +  + R    PE +         E AVH+  +  I   LG+D    +  Y++ P 
Sbjct: 88  GEEFWMGKVVRTFPRPEVKLAASILCMMELAVHAEFYNQINVVLGMDTDADYVAYKDDPE 147

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  + +W                             + + + E    ++ FA + S    
Sbjct: 148 LMGRMDWLESVLGDEDDVL---------------SVIIFSLTETALLFSSFAILKSFQCN 192

Query: 215 NK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIE--NPHLWTKEFQQKSRTMLHEATL 270
               +  IA        DE LH     ++INQ   E   P        +K R  +     
Sbjct: 193 GYNDIPVIARGANQSAVDEDLHGVVSAEIINQYYAEIGRPLSEDTRRVEKIRQAIDHVYA 252

Query: 271 LEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID 328
            E       +P G + G +A + + ++++  N  C ++GLE  F+  + P   W      
Sbjct: 253 HECRIVDMAIPGGELNGESAENYKAFVRYRLNVWCRRLGLEDHFENDDTPIKDWFEMNTY 312

Query: 329 LKKEKNFF 336
             K  +FF
Sbjct: 313 AYKMIDFF 320


>gi|229489433|ref|ZP_04383296.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
           erythropolis SK121]
 gi|229323530|gb|EEN89288.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
           erythropolis SK121]
          Length = 318

 Score = 89.5 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 85/266 (31%), Gaps = 15/266 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
            +       W PT++    D   W+    LT +++         F + E  V       +
Sbjct: 28  LFTKGNAKFWNPTDLDFSQDARDWQE---LTSEQQRSATFLCAQFIAGEEAVTEDIQPFM 84

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
                        YL +  FEEA H+  F+  +  +GL              +     + 
Sbjct: 85  KAMSTEGRFGDEMYLTQFCFEEAKHTQVFRLWMDEVGLTSD-------LHSYVADNPYYR 137

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIA 221
             + + L S      T  +    ++    +  V EG    TG+     +      + G+ 
Sbjct: 138 QLFYEELPSSLRILETDPSPVNQVRASVTYNHVIEGSLALTGYYAWQKVCATRGILPGMQ 197

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I  DE  H+ +G     +    + H W    Q+    M     +  I + ++   
Sbjct: 198 QLVRKIGDDERRHMAWGTFTCRRHVAADDHNWDVVQQRMGELMPMALGM--INWVNDQFE 255

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQI 307
               GL+     +Y    A RR   I
Sbjct: 256 VQPFGLDNQEFLEYAADRAQRRLSAI 281


>gi|254230294|ref|ZP_04923683.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio sp.
           Ex25]
 gi|151937191|gb|EDN56060.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio sp.
           Ex25]
          Length = 242

 Score = 89.5 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 81/211 (38%), Gaps = 9/211 (4%)

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWAL--QYTQTLSSPSFTTGTKDADQEFL 186
             F  I+ +  + +      +     I A  ++    +    L+  +      D  ++  
Sbjct: 1   MVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHVLNGETVKVSLYDLKKKLY 60

Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
             L     + E + FY  FA   +      M G A+  + I RDE+LHLN    +IN ++
Sbjct: 61  ICLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLR 119

Query: 247 IENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIAN 301
                       +E +Q    +  EA   E  +A      G  +GLN     QY+++I N
Sbjct: 120 NGQDDFTFMQIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITN 179

Query: 302 RRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
            R   +GL   +   T NP PW++  +    
Sbjct: 180 IRMQAVGLPAAYPEATTNPIPWINAWLSSDN 210


>gi|226305446|ref|YP_002765406.1| hypothetical protein RER_19590 [Rhodococcus erythropolis PR4]
 gi|226184563|dbj|BAH32667.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 318

 Score = 89.5 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 85/266 (31%), Gaps = 15/266 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
            +       W PT++    D   W+    LT +++         F + E  V       +
Sbjct: 28  LFTKGNAKFWNPTDLDFSQDARDWQE---LTSEQQRSATFLCAQFIAGEEAVTEDIQPFM 84

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
                        YL +  FEEA H+  F+  +  +GL              +     + 
Sbjct: 85  KAMSTEGRFGDEMYLTQFCFEEAKHTQVFRLWMDEVGLTSD-------LHSYVADNPYYR 137

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIA 221
             + + L S      T  +    ++    +  V EG    TG+     +      + G+ 
Sbjct: 138 QLFYEELPSSLRILETDPSPVNQVRASVTYNHVIEGSLALTGYYAWQKVCATRGILPGMQ 197

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           +  + I  DE  H+ +G     +    + H W    Q+    M     +  I + ++   
Sbjct: 198 QLVRKIGDDERRHMAWGTFTCRRHVAADDHNWDVVQQRMGELMPMALGM--INWVNDQFE 255

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQI 307
               GL+     +Y    A RR   I
Sbjct: 256 VQPFGLDNQEFLEYAADRAQRRLSAI 281


>gi|308183791|ref|YP_003927923.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308047717|gb|ADO00260.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 242

 Score = 89.1 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 92/251 (36%), Gaps = 25/251 (9%)

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
           +   +   +    L      E++H+ ++  I+TSL       E+F      P +  KA  
Sbjct: 1   MRPDVRTRKEAAVLNDFLMMESIHAKSYGTILTSLNDQATVDEVFKWMNNNPRMQYKAKR 60

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
                QT ++                      V  EG+ +YT F   L     NK+  ++
Sbjct: 61  INDIYQTGNNLEKKV---------------ASVFLEGILYYTNFFTPLWYRGNNKLANLS 105

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  + ++RDES+H  +          E      K F++    +L +    E A+  E   
Sbjct: 106 EVIKLVIRDESVHGTYLGYKFQLGYNELSATEQKTFKKWMDELLDDLLENEFAFTEEVY- 164

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFE 337
              +GL A   +Q++ + AN+    +GLE  F   E    NP   M+ +       +FF 
Sbjct: 165 -APIGL-AEDVKQFVHYNANKALQNMGLESRFPNAEIKDINPIV-MNGISTETANHDFFS 221

Query: 338 TRVTEYQQGAE 348
                Y  G  
Sbjct: 222 QVGAGYLMGNA 232


>gi|326804460|ref|YP_004327264.1| ribonucleotide-diphosphate reductase beta subunit [Pseudomonas
           phage PAK_P1]
 gi|290873873|gb|ADD65076.1| ribonucleotide-diphosphate reductase beta subunit [Pseudomonas
           phage PAK_P1]
          Length = 348

 Score = 89.1 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 103/308 (33%), Gaps = 26/308 (8%)

Query: 38  KYGWAWEKYLSA-CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           KY    E          W  +E+ ++ D    K    L   +   +K  L  F   E +V
Sbjct: 30  KYPVIVELANQQLEEKLWFSSEMKVELDKLNLK--FKLEPHQLHAVKTVLQLFLKYELIV 87

Query: 97  ANNIVL-AIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
                +  + R    PE +         E AVH+  +  I   LG+D    +  Y++ P 
Sbjct: 88  GEEFWMGKVVRTFPRPEVKLAASILCMMELAVHAEFYNQINVVLGMDTDADYVAYKDDPE 147

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  +  W                             + + + E    ++ FA + S    
Sbjct: 148 LMGRMEWLESVLGDEDDVL---------------SVIIFSLTETALLFSSFAILKSFQCN 192

Query: 215 NK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIE--NPHLWTKEFQQKSRTMLHEATL 270
               +  IA        DE LH     ++INQ   E   P        +K R  +     
Sbjct: 193 GYNDIPVIARGANQSAVDEDLHGVVSAEIINQYYAEIGRPLSEDTRRVEKIRQAIDHVYA 252

Query: 271 LEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID 328
            E       +P G + G +A + + ++++  N  C ++GLE  F+  + P   W      
Sbjct: 253 HECRIVDMAIPGGELNGESAENYKAFVRYRLNVWCRRLGLEDHFENDDTPIKDWFEMNTY 312

Query: 329 LKKEKNFF 336
             K  +FF
Sbjct: 313 AYKMIDFF 320


>gi|70937204|ref|XP_739440.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56516443|emb|CAH87750.1| hypothetical protein PC302623.00.0 [Plasmodium chabaudi chabaudi]
          Length = 72

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
              QY++F+A+R    +G   +F +++NPF WM  +I L+ + NFFE RV +YQ+   +
Sbjct: 2   LMSQYIEFVADRLLECLGCSKVF-HSKNPFSWMD-LISLQGKTNFFEKRVADYQKSGVM 58


>gi|153819185|ref|ZP_01971852.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
           cholerae NCTC 8457]
 gi|126510271|gb|EAZ72865.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
           cholerae NCTC 8457]
          Length = 171

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 6/137 (4%)

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KE 256
           FY  FA   +      M G A+  + I RDE+LHL     ++N ++            +E
Sbjct: 3   FYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEE 62

Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK- 314
            +Q+S  +  EA   E  +A      G  +GLN     QY+++I N R   +GLEP +  
Sbjct: 63  CKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPA 122

Query: 315 YTENPFPWMSEVIDLKK 331
            T NP PW++  +    
Sbjct: 123 ATNNPIPWINAWLSSDN 139


>gi|66802406|ref|XP_629985.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4]
 gi|60463390|gb|EAL61578.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4]
          Length = 257

 Score = 88.7 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 22/191 (11%)

Query: 41  WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
             W+ Y     N W+  E+   DD   W+    LT+DER      L FF +S  ++  N+
Sbjct: 86  DIWKMYKKTLANQWVVEEIESSDDGLDWEK--KLTNDERDFFSNVLAFFVASCGIINKNL 143

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMYREVPSITA 157
                  +  PE + +   Q   + +HS T+  +I +   D+    +LFN    +P +  
Sbjct: 144 N-RFMSKVQIPEAKCFYNYQIHIKYLHSETYSLLIETCIKDKNIKDKLFNAIETIPCVKK 202

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
           KA WAL++                     +   V  V FE ++F   F  I  L + + M
Sbjct: 203 KAEWALKWINES----------------FEKRLVALVAFESIFFSGSFRIISLLKKRSLM 246

Query: 218 VGIAEQYQYIM 228
            G+    + I 
Sbjct: 247 QGLTFSNELIN 257


>gi|163784572|ref|ZP_02179421.1| ribonucleotide-diphosphate [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880158|gb|EDP73813.1| ribonucleotide-diphosphate [Hydrogenivirga sp. 128-5-R1-1]
          Length = 139

 Score = 88.3 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 3/138 (2%)

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHE 267
            ++    KM  +    + ++ DESLHL  GI+ I  I  ENP +    +F +  R  + +
Sbjct: 1   FAMKDTGKMKNVVSGVELVLIDESLHLQNGIEAILTIIEENPEIVDDIKFVENIRDTIID 60

Query: 268 ATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
           A  LE+ Y           G++    E YM++IA+RR  ++G +P F   +NP  ++ + 
Sbjct: 61  AVELELNYLKTKFGGTTIFGVSYKELEMYMKYIADRRLEELGFDPQFNIQQNPLKFLQKE 120

Query: 327 IDLKKEKNFFETRVTEYQ 344
            D+KK  NFFE   TEY 
Sbjct: 121 -DVKKLTNFFEVSSTEYT 137


>gi|29135241|ref|NP_803871.1| ORF305 [Pseudomonas phage phiKZ]
 gi|18996770|gb|AAL83206.1|AF399011_305 PHIKZ305 [Pseudomonas phage phiKZ]
          Length = 387

 Score = 87.9 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 126/349 (36%), Gaps = 31/349 (8%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
             I    K      + +L     +   +   Y   WE Y       W   E      L  
Sbjct: 9   KKIFNVAKSDYHLPEIILGDDPGLLDSIHTHYPKMWELYKRLKMLDWDELEFDFSTCLVE 68

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
           +++ +  T D   M+ + L +   ++S+ + +IV  +   +++       +R    E VH
Sbjct: 69  FETCDKSTYD---MMIKTLAWQWEADSVASRSIVNILSPVMTDSRVWAGYVRINDNEDVH 125

Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS--PSFTTGTKDADQEF 185
           + T+  I+ +   D   + +    V     +     +          ++       DQE 
Sbjct: 126 ALTYSEIVRNSFKDPKVILDEILRVEEAQERMVAVARTMGEAHDAVHAYALNQVPNDQEL 185

Query: 186 LQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE-SLHLNFGIDV 241
              +F+F++     E + F   FA   ++GR      IA   + I +DE  +H  +G +V
Sbjct: 186 YNKVFMFFIALYFLERIQFMASFAVTFAIGRTGAFQQIAAAVKKIAQDEFEIHAQYGQEV 245

Query: 242 INQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQF 298
           I  +   E   L   + + K   +L E    E+ + +    +G    G+NA     ++ F
Sbjct: 246 IRALLATERGKLAYSQCKDKIIELLWEIVKTEVTWINYLFSEGRELTGVNATKLINWVLF 305

Query: 299 IANRRCHQI------------------GLEPLFKYTENPFPWMSEVIDL 329
            AN     +                  G + ++   +NP  +M + +D+
Sbjct: 306 NANAAATFLSIENDVVEQYQVEFKESAGFDFVWP-EKNPLLYMEDYLDI 353


>gi|297521777|ref|ZP_06940163.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           OP50]
          Length = 174

 Score = 87.5 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL-- 252
           E + FY  FA   +      M G A+  + I RDE+LHL     ++N  +   ++P +  
Sbjct: 3   EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAE 62

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEP 311
             +E +Q+   +  +A   E  +A      G  +GLN     QY+++I N R   +GL+ 
Sbjct: 63  IAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL 122

Query: 312 LFKYTENPFPWMSEVI 327
            F+   NP PW++  +
Sbjct: 123 PFQTRSNPIPWINTWL 138


>gi|213646443|ref|ZP_03376496.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|289824706|ref|ZP_06544205.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 240

 Score = 87.1 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           T T++  +     ++  ++    L     + E + FY  FA   +      M G A+  +
Sbjct: 39  THTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIR 97

Query: 226 YIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
            I RDE+LHL     ++N  +  +++P +    +E +Q+   +  +A   E  +A     
Sbjct: 98  LIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFR 157

Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            G  +GLN     QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 158 DGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 204


>gi|256111767|ref|ZP_05452742.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 3 str. Ether]
          Length = 190

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 8/165 (4%)

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
            V  E   FY+GF   +      K+   A+  + I+RDE++H  +      +        
Sbjct: 25  SVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEE 84

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             +E +  +  +L E    E+ Y         VGL     ++++ + AN+    +G E L
Sbjct: 85  KRQEIKDFAFELLLELYDNEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEAL 141

Query: 313 FKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
           F       NP    +   +  +  +FF    + Y   +    + +
Sbjct: 142 FPAEACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAVATEDE 186


>gi|13274105|emb|CAC33823.1| ribonucleotide reductase beta-subunit [Corynebacterium glutamicum]
          Length = 201

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 81/217 (37%), Gaps = 27/217 (12%)

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
            + F    E  ++  KA   L Y +                       +  V+ E   FY
Sbjct: 1   NDAFRWSEENENLQRKAKIILSYYEGDD---------------PLKRKIASVILESFLFY 45

Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           +GF   +     +K+   A+  + I+RDE++H  +      +   +      +E ++ + 
Sbjct: 46  SGFYLPMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTF 105

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----- 317
            +L++    E  Y+ +      +G      ++++++ AN+  + +G E LF   E     
Sbjct: 106 DLLYDLYDNETQYSEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETKVSP 162

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
           N    +S   +  +  +FF    + Y   +    + D
Sbjct: 163 NILSALSP--NADENHDFFSGSGSSYVIGKAENTEDD 197


>gi|323945045|gb|EGB41110.1| nrdB protein [Escherichia coli H120]
 gi|333002093|gb|EGK21659.1| ribonucleoside-diphosphate reductase 1 subunit beta domain protein
           [Shigella flexneri K-218]
          Length = 178

 Score = 87.1 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL-- 252
           E + FY  FA   +      M G A+  + I RDE+LHL     ++N  +   ++P +  
Sbjct: 7   EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAE 66

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEP 311
             +E +Q+   +  +A   E  +A      G  +GLN     QY+++I N R   +GL+ 
Sbjct: 67  IAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL 126

Query: 312 LFKYTENPFPWMSEVI 327
            F+   NP PW++  +
Sbjct: 127 PFQTRSNPIPWINTWL 142


>gi|265993236|ref|ZP_06105793.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 3 str. Ether]
 gi|262764106|gb|EEZ10138.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 3 str. Ether]
          Length = 189

 Score = 86.8 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 8/165 (4%)

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
            V  E   FY+GF   +      K+   A+  + I+RDE++H  +      +        
Sbjct: 24  SVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEE 83

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
             +E +  +  +L E    E+ Y         VGL     ++++ + AN+    +G E L
Sbjct: 84  KRQEIKDFAFELLLELYDNEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEAL 140

Query: 313 FKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
           F       NP    +   +  +  +FF    + Y   +    + +
Sbjct: 141 FPAEACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAVATEDE 185


>gi|297520407|ref|ZP_06938793.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
           OP50]
          Length = 225

 Score = 86.8 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 4/159 (2%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 25  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 81

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 82  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 141

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           +II ++  D   +F+       I  +A     Y   L  
Sbjct: 142 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIE 180


>gi|333001770|gb|EGK21336.1| ribonucleoside-diphosphate reductase 1 subunit beta domain protein
           [Shigella flexneri K-218]
          Length = 197

 Score = 86.8 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 4/159 (2%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           +II ++  D   +F+       I  +A     Y   L  
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIE 163


>gi|323945044|gb|EGB41109.1| nrdB protein [Escherichia coli H120]
          Length = 197

 Score = 86.4 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 4/159 (2%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF E +HS ++ 
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           +II ++  D   +F+       I  +A     Y   L  
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIE 163


>gi|289810170|ref|ZP_06540799.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 215

 Score = 86.0 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 8/162 (4%)

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
            V  E   FY+GF   +      K+   A+  + I+RDE++H  +          +   +
Sbjct: 50  SVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAI 109

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
             +E +  +  +L E    EI Y        G+V       + ++ + AN+    +G E 
Sbjct: 110 EREELKLFALDLLMELYDNEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEA 165

Query: 312 LFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           LF       NP    +   +  +  +FF    + Y  G  ++
Sbjct: 166 LFPPEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVE 207


>gi|32709427|gb|AAP86732.1| NrdB [Enterobacteria phage RB3]
          Length = 258

 Score = 86.0 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 89/260 (34%), Gaps = 38/260 (14%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    +      +  W P EV +  
Sbjct: 1   MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-------------- 169
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +              
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKTREWENAKEFV 174

Query: 170 ------SSPSFTTGTKDADQEFLQDLFVFYVV--------FEGMWFYTGFAQILSLGRAN 215
                     F        +   +   +  +          E + FY  FA   +  +  
Sbjct: 175 ELAKESPDADFRLNRAIKQEAEAKRALMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234

Query: 216 -KMVGIAEQYQYIMRDESLH 234
             M G A+  ++I RDE LH
Sbjct: 235 EIMEGNAKIMKFIARDEQLH 254


>gi|312140626|ref|YP_004007962.1| ribonucleoside-diphosphate reductase nrdb [Rhodococcus equi 103S]
 gi|325675746|ref|ZP_08155430.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
 gi|311889965|emb|CBH49283.1| ribonucleoside-diphosphate reductase NrdB [Rhodococcus equi 103S]
 gi|325553717|gb|EGD23395.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
           ATCC 33707]
          Length = 323

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 92/267 (34%), Gaps = 18/267 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
            ++      W P ++    D   W S   LT +E+         F + E  V       +
Sbjct: 28  LFVKGNAKFWNPADIDFTQDAEDWAS---LTSEEKRSSTYLCTQFIAGEEAVTEDIQPFM 84

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
                        YL +  FEEA H   F+  + ++GLD           P +    ++ 
Sbjct: 85  KAMAAEGRFNDEMYLTQFCFEEAKHVQVFRRWMDAVGLD-------GDLHPFVAENPHYR 137

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIA 221
             + + L        T  +    ++    +  V EG    TG+     +        G+ 
Sbjct: 138 TLFYEELPRSLRILETDPSPANQIRASVTYNHVIEGSLALTGYYAWQRVCTERGIFPGMQ 197

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  + I  DE  H+ +G     +    +        QQ+   +L  A  + I + ++   
Sbjct: 198 ELVRRIGDDERRHMAWGTFTCRRHVAADDS-NWDLVQQRMGELLPHALDM-IQWVNDQFE 255

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIG 308
           +   G++      Y+++ A+R   ++G
Sbjct: 256 EPPFGIDPAV---YLEYAADRAQRRLG 279


>gi|213612975|ref|ZP_03370801.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 205

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 8/162 (4%)

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
            V  E   FY+GF   +      K+   A+  + I+RDE++H  +          +   +
Sbjct: 40  SVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAI 99

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
             +E +  +  +L E    EI Y        G+V       + ++ + AN+    +G E 
Sbjct: 100 EREELKLFALDLLMELYDNEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEA 155

Query: 312 LFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           LF       NP    +   +  +  +FF    + Y  G  ++
Sbjct: 156 LFPPEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVE 197


>gi|328958551|ref|YP_004375937.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
 gi|328674875|gb|AEB30921.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
           sp. 17-4]
          Length = 328

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 89/271 (32%), Gaps = 19/271 (7%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +    +  W+ T +P+ ++ + W+    L ++ER +  + L   AS  +  +    + I 
Sbjct: 32  WEKLTSLFWLDTRIPVTNEKSQWED---LPENERKVFLKTLAGLASVATFQSERGFMVIE 88

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
                 +         F E+VH+  +  I+      +            +     WA   
Sbjct: 89  EGEHTQQEAAIYNNIQFIESVHAKAYNTILIGFNEPK-----------EVDDILIWADNN 137

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            +                   + +    ++ EG+  Y+G    L      +   +AE  +
Sbjct: 138 IELKYRLDRILEVYKTGTTLQKRVA--NLILEGVLTYSGLFTPLLYWTQKRFTSVAEIIK 195

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            ++ +ESLH  +          E       E +  +  +  +    E+ Y  +   +   
Sbjct: 196 LVLTNESLHCFYISHKFQLGFSELSQQEQTELRDWTFDLFVDLVNNELNYIEQIYYRTDW 255

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
                  + +++  AN     +G + ++  +
Sbjct: 256 ---LEEVKDFIRQQANNALKSLGFDTIYPES 283


>gi|296167463|ref|ZP_06849862.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897211|gb|EFG76818.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 305

 Score = 85.2 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 20/264 (7%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+    LT+DER    R    F + E  V       ++  R
Sbjct: 19  GNAKFWNPADIDFSRDRADWEQ---LTEDERHYAIRLCAEFIAGEEAVTEDIQPFMSAMR 75

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H   F+  + ++G+ E            +     +   + 
Sbjct: 76  VEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTED-------LHQYLDDIPTYRTIFY 128

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
           + L           +    ++    +  + EGM   TG+     +      + G+ E  +
Sbjct: 129 EELPDCLNALSVDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVR 188

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY-AHETMPKGF 284
            I  DE  H+ +G     +    +   W     + +  M     L+E  +  ++ MP G 
Sbjct: 189 RIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFSLYDPMPFGL 248

Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
                 S +++MQ+ A++   + G
Sbjct: 249 ------SVDEFMQYAADKGMRRFG 266


>gi|301331892|gb|ADK70922.1| U27.5 [Elephant endotheliotropic herpesvirus 2]
          Length = 301

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/306 (20%), Positives = 116/306 (37%), Gaps = 27/306 (8%)

Query: 41  WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
              + Y +   N W+  ++     L  +K    L +  +   K    F   +E LV  N+
Sbjct: 12  DFRQLYRTVTENRWLEGQISF---LNDYKHILLLDEKTKEYYKFIFCFLGMAEHLVNFNL 68

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
              I R L +P+   Y + Q   E VH+ T++ I+     ++ +         +I   A+
Sbjct: 69  FDMIER-LEDPDVIHYYIEQMSIECVHARTYRRILNIFYDNDEK---------AIMCAAD 118

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
           + L+    L   SF   T        + + V  ++ EG++F + F  I  L       G 
Sbjct: 119 FYLKDPALLKKISFLEKTIRECDTLGKKIIVL-ILIEGIFFLSSFVSIAMLRTIG-FDGT 176

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
            E   YI RDES+H      +             +       ++  +   +E  + +   
Sbjct: 177 TEANTYICRDESIHTTAATKLYLNYV----TPENRPSYSFIYSLFSDVIRIEKEFIN-AK 231

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFE 337
             G   +N       ++ +A++   +I ++PL+        P P    +  ++K   FFE
Sbjct: 232 VDGVGLINKKVIFDTLEGVADQLLARINMQPLYATQIPNNCPLP----LSTIEKNVCFFE 287

Query: 338 TRVTEY 343
            R TEY
Sbjct: 288 KRNTEY 293


>gi|111023180|ref|YP_706152.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
           jostii RHA1]
 gi|123045538|sp|Q0S392|RIR2H_RHOSR RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|110822710|gb|ABG97994.1| probable ribonucleoside-diphosphate reductase [Rhodococcus jostii
           RHA1]
          Length = 324

 Score = 84.8 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 86/266 (32%), Gaps = 15/266 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
            +       W PT++    D   W+   GL  +++      +  F + E  V       +
Sbjct: 34  LFTKGNAKFWNPTDLDFSRDAEDWE---GLNSEQQRNSTYLVAQFIAGEEAVTEDIQPFM 90

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
                        YL +  FEEA H+  F+  + ++GL            P +     + 
Sbjct: 91  KAMAAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGLTRD-------LHPFVAENPYYR 143

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIA 221
             + + L        T  +    ++    +  V EG    TG+     +      + G+ 
Sbjct: 144 QLFYEELPGSLKVLETDPSPVNQVRASVTYNHVIEGSLALTGYYAWQKVCTTRGILPGMQ 203

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  + I  DE  H+ +G     +    +   W    ++ +  M     +  I + ++   
Sbjct: 204 ELVRRIGDDERRHMAWGTFTCRRHVAADDSNWGVVQERMAELMPLALGM--IDWVNKQFE 261

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQI 307
               GL+      Y    A RR   I
Sbjct: 262 VQPYGLDDQEFIAYAADRAQRRLGAI 287


>gi|257057366|ref|YP_003135198.1| ribonucleotide-diphosphate reductase subunit beta
           [Saccharomonospora viridis DSM 43017]
 gi|256587238|gb|ACU98371.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis
           DSM 43017]
          Length = 328

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 100/288 (34%), Gaps = 29/288 (10%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
               D N L PL+       +       W P ++    D   W+    LTD +RL     
Sbjct: 19  RGGLDWNTL-PLR------LFAKGNRKFWDPADIDFSVDARDWE---KLTDRQRLSATYL 68

Query: 86  LGFFASSESLVAN--NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
              FA+ E  V       L             YL +  FEEA H+  F+  + ++GL + 
Sbjct: 69  CAQFAAGEEAVTEDIQPFLRAMAAEGRLGDEMYLAQFCFEEAKHTEAFRRWMDAVGLTDD 128

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
                    P +    ++   + + L           + +  ++    +  V EG    T
Sbjct: 129 -------LHPFVAENPHYRKLFYEELPESLGVLAEDPSPRNQVRASVTYNHVIEGSLALT 181

Query: 204 GFAQILSLG-RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           G+     L      + G+ E  + +  DE  H+ +G     +    +  LW    Q+   
Sbjct: 182 GYYAWQKLCVSRGILPGMRELVRRVSDDERRHMAWGTFTCRRHVAADDSLWEVVQQRMDE 241

Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN---RRCHQI 307
            + H   ++E  + +    +   G NA     ++++ A+   RR   I
Sbjct: 242 LLPHALGMIE--WVNRQFDESSDGDNAE----FVRYAADRAQRRLSAI 283


>gi|134097201|ref|YP_001102862.1| ribonucleotide-diphosphate reductase subunit beta
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291005341|ref|ZP_06563314.1| ribonucleotide-diphosphate reductase subunit beta
           [Saccharopolyspora erythraea NRRL 2338]
 gi|238055312|sp|A4F7B2|RIR2H_SACEN RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|133909824|emb|CAL99936.1| ribonucleoside-diphosphate reductase beta chain [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 317

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 83/263 (31%), Gaps = 14/263 (5%)

Query: 48  SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIY 105
                 W P ++    D   W+   GLT++ER  +      F + E  V       +A  
Sbjct: 31  KGNAKFWDPADIDFTRDAEDWQ---GLTEEERRSVAMLCSQFIAGEEAVTQDLQPFMAAM 87

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
                     YL +  FEEA H+  F+  + ++GL              +     +   +
Sbjct: 88  AAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGL-------TGDLHSHVAENPGYRAIF 140

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQY 224
            + L           +    ++    +  V EG    TG+     + R    + G+ E  
Sbjct: 141 YEELPRSLNALHDDPSPANQVRASVTYNHVVEGTLALTGYFAWQKICRSRGILPGMQEVV 200

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
           + I  DE  H+ +G     +    +   W    +Q    +    T ++           F
Sbjct: 201 RRIGDDERRHMAWGTFTCRRHVAADESNWDVVQEQMQHLLPLAVTQIQWRPEDAPEETPF 260

Query: 285 VGLNAPSCEQYMQFIANRRCHQI 307
             L+      Y    A RR   I
Sbjct: 261 R-LDIDELAAYASDRAGRRLGAI 282


>gi|207108882|ref|ZP_03243044.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
           pylori HPKX_438_CA4C1]
          Length = 79

 Score = 83.7 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE-K 333
                     +GL +   EQY+QF+A+ R  ++G+  ++   ++P  W+       ++  
Sbjct: 1   MGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYGV-QHPIKWVESFSSFNEQRS 59

Query: 334 NFFETRVTEYQQGAELKWD 352
           NFFE RV+ Y +G+    D
Sbjct: 60  NFFEARVSNYAKGSVSFDD 78


>gi|120404438|ref|YP_954267.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           vanbaalenii PYR-1]
 gi|238055311|sp|A1TAR1|RIR2H_MYCVP RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|119957256|gb|ABM14261.1| ribonucleotide reductase [Mycobacterium vanbaalenii PYR-1]
          Length = 312

 Score = 83.7 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 93/263 (35%), Gaps = 18/263 (6%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+S   LTD ER    R    F + E  V       +A  R
Sbjct: 27  GNAKFWDPADIDFSRDRADWES---LTDLERDWATRLCAEFIAGEEAVTQDIQPFMAAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ E            +     +   + 
Sbjct: 84  AEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGITED-------LQGYLDELPAYCQMFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
           + L +      T  +    ++    +  V EGM   TG+     +      + G+ E  +
Sbjct: 137 EELPASLDALATDPSPAAQVRASVTYNHVIEGMMALTGYYAWHRICVDRGILPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I  DE  H+ +G     +    +   W     + +  +       E  +A     +   
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWAVFETRMNELIPLALRNTEDGFALY--DEVPF 254

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
           GL     E++ Q+ A++   + G
Sbjct: 255 GLT---MEEFQQYAADKGMRRFG 274


>gi|258510152|ref|YP_003183586.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476878|gb|ACV57197.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 317

 Score = 83.3 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 108/278 (38%), Gaps = 33/278 (11%)

Query: 34  LLPLKYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           +LP++       Y  A     W P ++    D   W+   G+ + ER +I R    F + 
Sbjct: 22  ILPMR------LYHKAKKLGTWDPRDIDFTKDKEDWQ---GMNEAERRVILRLCSLFVAG 72

Query: 93  ESLVANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
           E  V  +   ++         E   YL    FEEA H+  F+  +  +  +  +L     
Sbjct: 73  EEAVTLDLLPLIMAVAREGRLEEEMYLTTFLFEEAKHTEVFRRFLDEVAGETSDL----- 127

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FAQIL 209
              S+  K ++   + + L           + +   +    + +V EG+   TG +A   
Sbjct: 128 ---SVFHKDHYRKIFYEYLPQAMGRLVHDPSPEAQAEASVTYNMVVEGVLAETGYYAFYT 184

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK--------- 260
           +L + NK+ G+ +  + + RDES H+ +G  +++++  EN H+W    ++          
Sbjct: 185 ALQKENKLPGLIQAIRLLQRDESRHIGYGTYLLSRLISENAHIWDVVNRRINLLLPHAIG 244

Query: 261 -SRTMLHEATLLEIAYAHETMPKGFV--GLNAPSCEQY 295
             + +  E    E     E +    V  GLN      Y
Sbjct: 245 VVQDLNAELDTEEAQKLAEELGITDVPFGLNPDEFVAY 282


>gi|226365685|ref|YP_002783468.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
           opacus B4]
 gi|226244175|dbj|BAH54523.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 324

 Score = 82.9 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 86/266 (32%), Gaps = 15/266 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
            +       W PT++    D   W+   GL  +++      +  F + E  V       +
Sbjct: 34  LFTKGNAKFWNPTDLDFSRDAEDWE---GLNSEQQRNSTYLVAQFIAGEEAVTEDIQPFM 90

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
                        YL +  FEEA H+  F+  + ++GL            P +     + 
Sbjct: 91  KAMAAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGLTRD-------LHPFVADNPFYR 143

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIA 221
             + + L        T  +    ++    +  V EG    TG+     +      + G+ 
Sbjct: 144 QLFYEELPGSLKVLETDPSPANQVRASVTYNHVIEGSLALTGYYAWQKVCTTRGILPGMQ 203

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  + I  DE  H+ +G     +    +   W    ++ +  M     +  I + ++   
Sbjct: 204 ELVRRIGDDERRHMAWGTFTCRRHVAADDGNWGVVQERMAELMPLALGM--IDWVNKQFE 261

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQI 307
               GL+      Y    A RR   I
Sbjct: 262 VQPYGLDDQEFIAYAADRAQRRLGAI 287


>gi|218291056|ref|ZP_03495088.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1]
 gi|218239010|gb|EED06216.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1]
          Length = 317

 Score = 82.9 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 106/279 (37%), Gaps = 33/279 (11%)

Query: 33  QLLPLKYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
            +LP++       Y  A     W P ++    D   WK    + + ER +I R    F +
Sbjct: 21  NILPMR------LYHKAKKLGVWDPRDIDFSKDKEDWK---AMNEAERRVILRLCSLFVA 71

Query: 92  SESLVANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
            E  V  +   ++         E   YL    FEEA H+  F+  +  +  +  +L    
Sbjct: 72  GEEAVTLDLLPLIMAVAREGRLEEEMYLTTFLFEEAKHTEVFRRFLDEVAGESSDL---- 127

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FAQI 208
               S   K ++   + + L           + +   +    + +V EG+   TG +A  
Sbjct: 128 ----STFHKDHYRKIFYEYLPQAMGRLVHDPSPEAQAEASVTYNMVVEGVLAETGYYAFY 183

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ--------- 259
            +L + NK+ G+ +  + + RDES H+ +G  +++++  EN ++W    ++         
Sbjct: 184 TALQKENKLPGLIQAIRLLQRDESRHIGYGTYLLSRLISENEYIWDVVNRRTNLLLPHAI 243

Query: 260 -KSRTMLHEATLLEIAYAHETMPKGFV--GLNAPSCEQY 295
              + +  E    E     E +    V  GLN      Y
Sbjct: 244 GVVQDLNAELDTEEAQKLAEELGITDVPFGLNPDEFVAY 282


>gi|226331040|ref|ZP_03806558.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198]
 gi|225201835|gb|EEG84189.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198]
          Length = 182

 Score = 82.9 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 20/191 (10%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           +      ++     E +     N W+P ++P+ +D+  W +   LT  E+ +  R     
Sbjct: 10  NAINWNRIEDEKDLEVWNRLTMNFWLPEKIPLSNDIPSWST---LTQAEKQLTIRVFTGL 66

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++        +      P     L    F EAVH+ ++  I ++L L     E + 
Sbjct: 67  TLLDTIQNTVGAPTLMPDALTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDEAYR 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              E P +  KA   L+Y Q                          V  E   FY+GF  
Sbjct: 127 WSEENPYLQKKAEIILRYYQDEDPLKKKI---------------ASVFLESFLFYSGFYL 171

Query: 208 ILSLGRANKMV 218
            +      K+ 
Sbjct: 172 PMYWSSRGKIN 182


>gi|146189565|emb|CAM91784.1| hypothetical protein [Platynereis dumerilii]
          Length = 87

 Score = 82.9 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 40  GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
              W+ Y  A  + W   EV +  D+A W+S   L  DER  I   L FFA+S+ +V  N
Sbjct: 1   PDIWQFYKRAEASFWTAEEVDLSKDVAQWES---LKKDERHFISHVLAFFAASDGIVNEN 57

Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
           +V    + +   E R +   Q   E +HS 
Sbjct: 58  LVERFSKEVQVTEARFFYGFQIAIENIHSE 87


>gi|269863385|ref|XP_002651202.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|269865188|ref|XP_002651836.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220063788|gb|EED42221.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220064957|gb|EED42855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 111

 Score = 82.5 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           + +L+       + P++Y   WE Y    +  W   EV M  D   + +   LT +E+  
Sbjct: 26  EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82

Query: 82  IKRNLGFFASSESLVANNIVLAIYRHLSN 110
           IK  L FFA+S+ +V  N+V      +  
Sbjct: 83  IKYVLAFFAASDGIVNENLVERFSSEVQI 111


>gi|302321458|gb|ADL16651.1| RNR2 [Abalone herpesvirus Victoria/AUS/2007]
          Length = 642

 Score = 82.5 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 120/320 (37%), Gaps = 44/320 (13%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           +Y    +       N W   E+    DLA+W     L +  R  IK  L F A  + +V 
Sbjct: 73  RYPVLADLADKLQANQWKANEIEPSKDLAVWVD---LPEPVRKCIKGALTFVAVGDIVVK 129

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL------FNMYRE 151
             I + +       EC ++   Q   E+ H   +   +T+   ++ EL      +    E
Sbjct: 130 EAIPMHMSNFPLT-ECGKFFQEQLINESEHQKLYTKFLTTFAHNKEELETLMHAYTNVEE 188

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
              + AK +   +  ++ S           +      LF   ++  G             
Sbjct: 189 FAPLKAKVDLINEIYKSGSRAEQVLYQTVMELIGFCSLFSIMLMPTG------------- 235

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                +  + E  Q +  DE+LH +F   + N        +  +   +K + ++ +A  +
Sbjct: 236 -----LKTLIEGNQSVRNDETLHGSFYAALHN-------IMPDRASPEKVKEIIVKAVEI 283

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-------KYTENPFPWMS 324
           EIA+A   + +    +N  S + +++  AN  C  +G+EP++            P  +M+
Sbjct: 284 EIAFAMSIVTEDLEHINPSSMQLHIKATANLCCEFLGVEPIYFDRWTKLPVVS-PLSYMN 342

Query: 325 EVIDLKKEKNFFETRVTEYQ 344
               L+K  NFFE R  +Y 
Sbjct: 343 NYETLQKF-NFFEVRNMDYS 361


>gi|196040724|ref|ZP_03108023.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           NVH0597-99]
 gi|196028514|gb|EDX67122.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           NVH0597-99]
          Length = 193

 Score = 82.5 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 12/187 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   E+F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L     T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKSEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMR 229
               I+R
Sbjct: 187 IINLIIR 193


>gi|229172092|ref|ZP_04299657.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           MM3]
 gi|228611435|gb|EEK68692.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           MM3]
          Length = 193

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 12/187 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIV 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMR 229
               I+R
Sbjct: 187 IINLIIR 193


>gi|113951975|gb|AAP86729.2| NrdB [Enterobacteria phage RB23]
          Length = 251

 Score = 82.1 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 90/257 (35%), Gaps = 9/257 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    +      +  W P EV +  
Sbjct: 1   MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +       AD 
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKTRYWENAKADI 174

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E+ +++     V E    +  + +   +      + +    + I    S    F      
Sbjct: 175 EYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234

Query: 244 QIKIENPHLWTKEFQQK 260
           +I   N  +     + +
Sbjct: 235 EIMEGNAKIMKFIARDE 251


>gi|206968243|ref|ZP_03229199.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH1134]
 gi|228951833|ref|ZP_04113931.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228957726|ref|ZP_04119470.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229069003|ref|ZP_04202296.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           F65185]
 gi|206737163|gb|EDZ54310.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH1134]
 gi|228714115|gb|EEL65997.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           F65185]
 gi|228801969|gb|EEM48842.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228807756|gb|EEM54277.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 193

 Score = 82.1 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 12/187 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F+     P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMR 229
               I+R
Sbjct: 187 IINLIIR 193


>gi|217958930|ref|YP_002337478.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH187]
 gi|222095086|ref|YP_002529146.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           Q1]
 gi|229138141|ref|ZP_04266739.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST26]
 gi|229195650|ref|ZP_04322416.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           m1293]
 gi|217065393|gb|ACJ79643.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH187]
 gi|221239144|gb|ACM11854.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           Q1]
 gi|228587899|gb|EEK45951.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           m1293]
 gi|228645486|gb|EEL01720.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
           BDRD-ST26]
          Length = 193

 Score = 81.8 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 12/187 (6%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +       W   E+ +  D   W     L+ +E++  KR LG     ++      +  +
Sbjct: 17  FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
             HL N + +  L      E VH+ ++ +I T+L  +E   ++F      P +  KA   
Sbjct: 74  LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
             Y + L  P  T               V  V  E   FY+GF   L L    K+    E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186

Query: 223 QYQYIMR 229
               I+R
Sbjct: 187 IINLIIR 193


>gi|329575046|gb|EGG56598.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecalis TX1467]
          Length = 212

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 78/207 (37%), Gaps = 20/207 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W++   L+D E+  +    G     +++ + + +  + 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGMDQLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
             +  P     L    F E+VH+ ++  I ++L   +   ++F        +  KA    
Sbjct: 79  NDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAERIN 138

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
           +  +  +                       V  E   FY+GF   L     NK+  +AE 
Sbjct: 139 EIYKNGTPLEKKI---------------ASVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENP 250
            + I+RDES+H  +          E P
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELP 210


>gi|297563117|ref|YP_003682091.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847565|gb|ADH69585.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 331

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 94/275 (34%), Gaps = 29/275 (10%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIV 101
           + +       W P ++ +  D   W+   GL +  R  I R   FF + E  V       
Sbjct: 35  KLFAKGNARFWNPADIDLSRDAEDWE---GLGEGARARILRLCAFFVAGEEAVTEDIQPF 91

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
           L             YL + AFEEA H   F+  + +LG+ E            + A   +
Sbjct: 92  LRAMAAEGRLGDEMYLTQFAFEEARHVQAFRLWLDALGVHED-------LHGYVDANPGY 144

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGI 220
              + + L S         + +  ++    +  V EG    TG+     L  A +   G+
Sbjct: 145 RTLFYEELPSSLEALLEDPSPRNQVRASVTYNHVIEGSLALTGYYAWNHLCTALDVFPGM 204

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I  DE  H+ +G     +    +   W          ++ +     + +   T+
Sbjct: 205 RRIVRMIGDDERRHMAWGTFTCRRHVAADDANW---------DVVRDRLDELLPHVTSTV 255

Query: 281 PKGFVGLNAPSCEQY-------MQFIANRRCHQIG 308
            +G      P+  +Y       +++  +R   ++G
Sbjct: 256 ERGEEPSGDPATRRYELPPGELVRYAGDRALRRLG 290


>gi|113951985|gb|AAP86733.2| NrdB [Enterobacteria phage RB61]
          Length = 251

 Score = 81.4 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 89/257 (34%), Gaps = 38/257 (14%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    +      +  W P EV +  
Sbjct: 1   MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +       AD 
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMKRAESIGRYYDDVIEKTRYWQNAKADI 174

Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
           E+ ++                                    E + FY  FA   +  +  
Sbjct: 175 EYQKEINADEDDIKDAIEHEMYWKRELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234

Query: 216 -KMVGIAEQYQYIMRDE 231
             M G A+  ++I RDE
Sbjct: 235 EIMEGNAKIMKFIARDE 251


>gi|70606887|ref|YP_255757.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           acidocaldarius DSM 639]
 gi|68567535|gb|AAY80464.1| hypothetical protein Saci_1112 [Sulfolobus acidocaldarius DSM 639]
          Length = 308

 Score = 81.0 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 105/289 (36%), Gaps = 19/289 (6%)

Query: 22  KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
           K +     D   L P+K       Y       W P+ + +  D A W   + L D ++ +
Sbjct: 14  KSIKKGGIDW-SLFPMK------LYQLGKKLFWDPSTIDLTQDRADW---DKLRDIDKFL 63

Query: 82  IKRNLGFFASSESLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
           +      F + E  VA   + ++         E   YL +  FEEA H   F+  + ++G
Sbjct: 64  MVNVTSKFGAGEEAVALDLHPLIVTLVKEGRVEEVMYLEQFIFEEAKHVEAFRRFLDAVG 123

Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
           + E           +     N+A  + + L    +      + +  ++    + +V EG+
Sbjct: 124 VKE------DLVELTKDVSPNYAKIFYEELPKAMWNLNRDPSPENQVRAAVTYNLVVEGV 177

Query: 200 WFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
               G+     + R  N   G+A+   YI  DES H+ FG  +I ++  E      K   
Sbjct: 178 AAEGGYNIFKYITRTFNIFPGLAKMVNYIATDESRHIAFGTYLIARLIKEGGESVYKAAM 237

Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
           +    +   A  +          +  + LN     +Y + + N R   I
Sbjct: 238 EHINYLGPYAVGIFSEPNVPQGVEIPLKLNPEVTVEYAKKLLNVRIQAI 286


>gi|113951998|gb|AAP86736.2| NrdB [Enterobacteria phage T6]
          Length = 247

 Score = 80.6 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 88/253 (34%), Gaps = 34/253 (13%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      VN+  + M            +   ++    E    + +  W P EV +  
Sbjct: 1   MSTVFN-TSPVNILTEPMFFGSGLGLARYDIQ--RHRVFEELIEKSLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +          
Sbjct: 115 ETIHSRSYTHIMRNLFADPSKVFDEILLDEAIMKRAESIGKYYDDVLLKTRAWENAKDMV 174

Query: 184 EFLQD------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN-KMV 218
           ++ +D                                E + FY  FA   +  +    M 
Sbjct: 175 KYYKDQGLILADKDVEQRAKRDLMKSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIME 234

Query: 219 GIAEQYQYIMRDE 231
           G A+  ++I RDE
Sbjct: 235 GNAKIMKFIARDE 247


>gi|168702485|ref|ZP_02734762.1| ribonucleotide-diphosphate reductase small chain [Gemmata
           obscuriglobus UQM 2246]
          Length = 70

 Score = 80.6 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
             GL+      Y ++ A+RR   +G+ P+F  T+NPF +M  + D+++  NFFE RV+ Y
Sbjct: 1   MAGLSCRDLRSYPEYAADRRLESLGIAPVFG-TKNPFGFMD-LQDVQELTNFFERRVSAY 58

Query: 344 QQGAEL 349
           Q G   
Sbjct: 59  QLGVTG 64


>gi|157310978|ref|YP_001468974.1| putative ribonucleotide reductase [Corynebacterium phage P1201]
 gi|95832126|gb|ABF57526.1| putative ribonucleotide reductase [Corynebacterium phage P1201]
          Length = 237

 Score = 80.6 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 87/241 (36%), Gaps = 26/241 (10%)

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSF 174
           + +  F E VH+ ++  + ++L   E     F       +   K    L + +      +
Sbjct: 1   MKQIGFMEEVHAKSYSSVFSTLFGSEDIDGAFAWVENNKATQVKK---LVFDEAYDISDY 57

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
                +     ++      V+ E   FYTGF   L      K+   A+  + IMRDE +H
Sbjct: 58  NDRRVEYYGAIIR---ASSVLLESFLFYTGFYLPLHFASQGKLTNTADLIRLIMRDEGVH 114

Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
             +      ++            +++   +     + EI    E      +GL+A   + 
Sbjct: 115 GYYLGYKFQKVMEGALPYERDAVKERVTNLACRLFVNEIPLIEEIYE--PLGLSAQ-VQT 171

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEV---------IDLKKEKNFFETRVTEYQQ 345
           ++++  N+    +GLE +F         M+ V         +D ++  +FF    + Y  
Sbjct: 172 FLRYNLNKAMQNLGLENVFPAE------MTRVEPRILSQLSVDSEETHDFFSGSGSSYVI 225

Query: 346 G 346
           G
Sbjct: 226 G 226


>gi|209523562|ref|ZP_03272116.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima
           CS-328]
 gi|209495967|gb|EDZ96268.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima
           CS-328]
          Length = 112

 Score = 79.8 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 8/107 (7%)

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               Q +   M   A   E  + +  +    +G+   S EQY +++AN R   IGLE L+
Sbjct: 4   FPHSQDRIYEMFDAAVQHECRWTNHIVGNNILGITEHSTEQYTKYLANIRLRSIGLESLY 63

Query: 314 ---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
              KY ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 64  SDPKYQKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVSGWD 110


>gi|291570484|dbj|BAI92756.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira
           platensis NIES-39]
          Length = 123

 Score = 79.8 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 8/107 (7%)

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
               Q +   M   A   E  + +  +    +G+   S EQY +++AN R   IGLE L+
Sbjct: 15  FPHSQDRIYEMFDAAVQHECRWTNHIVGNNILGITEHSTEQYTKYLANIRLRSIGLESLY 74

Query: 314 ---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
              KY ++P+  +    D KK    + NFFE  VT Y   + +  WD
Sbjct: 75  SDPKYQKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVSGWD 121


>gi|327197767|ref|YP_004301465.1| gp132 [Brochothrix phage A9]
 gi|299810367|gb|ADJ53166.1| gp132 [Brochothrix phage A9]
          Length = 203

 Score = 79.4 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 78/192 (40%), Gaps = 21/192 (10%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA-I 104
           +    +  W  T VP+ +DL  W++   L    + +  +  G     ++L + + +L+ +
Sbjct: 30  WEKLNSQFWTATRVPVSNDLDDWRT---LDPVAKDLYGKVFGGLTLLDTLQSQDGMLSLL 86

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA 162
                +P  R  L    F EA+H+ ++  I ++L   +    +F+       +  KA+  
Sbjct: 87  NNETQSPHMRAVLSNMLFMEAIHAQSYSTIFSTLMTPQEIANVFDFTHTNEHLQKKAHLI 146

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
            +  Q  + P                  +  V  E   FY+GF   L      KM  +AE
Sbjct: 147 NEVYQNGTVPQK---------------MIASVFLESGLFYSGFYTPLYYLGNGKMANVAE 191

Query: 223 QYQYIMRDESLH 234
             + I+RDES++
Sbjct: 192 VIRLILRDESVN 203


>gi|15899238|ref|NP_343843.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           solfataricus P2]
 gi|227829337|ref|YP_002831116.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus L.S.2.15]
 gi|229578110|ref|YP_002836508.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus Y.G.57.14]
 gi|229583322|ref|YP_002841721.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus Y.N.15.51]
 gi|284996696|ref|YP_003418463.1| ribonucleotide reductase [Sulfolobus islandicus L.D.8.5]
 gi|13815800|gb|AAK42633.1| Ribonuleotide reductase small subunit, probable (nrdB) [Sulfolobus
           solfataricus P2]
 gi|227455784|gb|ACP34471.1| ribonucleotide reductase [Sulfolobus islandicus L.S.2.15]
 gi|228008824|gb|ACP44586.1| ribonucleotide reductase [Sulfolobus islandicus Y.G.57.14]
 gi|228014038|gb|ACP49799.1| ribonucleotide reductase [Sulfolobus islandicus Y.N.15.51]
 gi|284444591|gb|ADB86093.1| ribonucleotide reductase [Sulfolobus islandicus L.D.8.5]
          Length = 308

 Score = 79.4 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 96/278 (34%), Gaps = 18/278 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K       Y       W P  + +  D   WK    L D E++ I      FA+ E
Sbjct: 25  LFPMK------LYQLGKKLFWDPANIDLSKDAEDWK---KLNDLEKMFIINVGSKFAAGE 75

Query: 94  SLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
             VA   + ++         E   YL +  +EE+ H   F+       ++  E  + Y +
Sbjct: 76  EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFD--IVNVMEDLSAYTK 133

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
             S     N+   + + L    +      + +  ++ +  + ++ EG+    G+     +
Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQI 189

Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A+    I  DES H+ FGI +I ++  E      K        +   A  
Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKAAMDHINYLAPYAIG 249

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           +        +      L       Y + + N R   I 
Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287


>gi|227826697|ref|YP_002828476.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus M.14.25]
 gi|229583861|ref|YP_002842362.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus M.16.27]
 gi|227458492|gb|ACP37178.1| ribonucleotide reductase [Sulfolobus islandicus M.14.25]
 gi|228018910|gb|ACP54317.1| ribonucleotide reductase [Sulfolobus islandicus M.16.27]
          Length = 308

 Score = 79.4 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 94/278 (33%), Gaps = 18/278 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K       Y       W P  + +  D   WK    L D E++ I      FA+ E
Sbjct: 25  LFPMK------LYQLGKKLFWDPANIDLSKDAEDWK---KLNDLEKMFIINVGSKFAAGE 75

Query: 94  SLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
             VA   + ++         E   YL +  +EE+ H   F+    ++ + E         
Sbjct: 76  EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFDAVNVME------DLS 129

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
             +     N+   + + L    +      + +  ++ +  + ++ EG+    G+     +
Sbjct: 130 TYTKDLSPNYKKIFYEELPKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQI 189

Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A+    I  DES H+ FGI +I ++  E      K        +   A  
Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKAAMDHINYLAPYAIG 249

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           +        +      L       Y + + N R   I 
Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287


>gi|113951972|gb|AAP86728.2| NrdB [Enterobacteria phage RB14]
          Length = 251

 Score = 79.1 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 91/257 (35%), Gaps = 9/257 (3%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      V+V  + M            +   ++    E    + +  W P EV +  
Sbjct: 1   MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHRVFEELTEKSLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +       AD 
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKTRYWENAKADI 174

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
           E+ +++     V E    +  + +   +      + +    + I    S    F      
Sbjct: 175 EYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234

Query: 244 QIKIENPHLWTKEFQQK 260
           +I   N  +     + +
Sbjct: 235 EIMEGNAKIMKFIARDE 251


>gi|323476430|gb|ADX81668.1| ribonucleotide reductase [Sulfolobus islandicus HVE10/4]
          Length = 308

 Score = 79.1 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 96/278 (34%), Gaps = 18/278 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K       Y       W P  + +  D   WK    L D E++ I      FA+ E
Sbjct: 25  LFPMK------LYQLGKKLFWDPANIDLSKDAEDWK---KLNDLEKMFIINVGSKFAAGE 75

Query: 94  SLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
             VA   + ++         E   YL +  +EE+ H   F+       ++  E  + Y +
Sbjct: 76  EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFD--IVNVMEDLSAYTK 133

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
             S     N+   + + L    +      + +  ++ +  + ++ EG+    G+     +
Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPKNQVRAVVTYNLIVEGVAAEGGYNIFRQI 189

Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A+    I  DES H+ FGI +I ++  E      K        +   A  
Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKTAMDHINYLAPYAIG 249

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           +        +      L       Y + + N R   I 
Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287


>gi|254823272|ref|ZP_05228273.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           intracellulare ATCC 13950]
          Length = 313

 Score = 79.1 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 96/264 (36%), Gaps = 20/264 (7%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D   W+    LT+DER    R    F + E  V       +A  R
Sbjct: 27  GNAKFWNPADIDFSRDREDWE---RLTEDERSYATRLCAEFIAGEESVTQDIQPFMAAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H   F+  + ++G+ E   +        +     +   + 
Sbjct: 84  AEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGITEDLHY-------FLDDVPTYRTIFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
           + L +         +    ++    +  + EGM   TG+     +      + G+ E  +
Sbjct: 137 EELPACLNALTLDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY-AHETMPKGF 284
            I  DE  H+ +G     +    +   W     + +  M     L+E  +  ++ MP G 
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFALYDPMPFGL 256

Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
                 S +++MQ+ +++   + G
Sbjct: 257 ------SVDEFMQYASDKGMRRFG 274


>gi|227902816|ref|ZP_04020621.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           acidophilus ATCC 4796]
 gi|227869479|gb|EEJ76900.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           acidophilus ATCC 4796]
          Length = 326

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 90/298 (30%), Gaps = 29/298 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N +       AW       +  W P  VP+++D   +     L    R  +    
Sbjct: 7   EAINWNDMEDKVDKSAWA---RLNDIIWEPRHVPVKEDKKEF---LQLPSPVRCTLLHVF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
              + S  L   + +  I      PE    L    + E++ + ++ Y++  L   E    
Sbjct: 61  SALSFSSGLQMKSGIEQIKVDAITPEEAAVLNALQYLESIANKSYSYVLRELATPEEVDN 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            F+     P +  K +   +  Q   +     G                V+ E   +++G
Sbjct: 121 AFDWANNSPYLQKKIHILNKIYQRGDALQKKAG---------------NVILETALYHSG 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L L    KMV  AE  +  +R  S    +          +      ++ +     +
Sbjct: 166 FFAPLYLFGQGKMVRTAEIIKLALRGTSFSGIYPGYKFRLGYKKLGKTEQEDLKHWIDNL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
             E    E  +          G    +   YM +  N+    +G    +  T    NP
Sbjct: 226 YDELVKNEEKHIRLLYKG--TGWTEDALH-YMYYSVNKAYLNLGFPGKYPDTSDTINP 280


>gi|323473782|gb|ADX84388.1| ribonucleotide reductase [Sulfolobus islandicus REY15A]
          Length = 308

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 96/278 (34%), Gaps = 18/278 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K       Y       W P  + +  D   WK    L D E++ I      FA+ E
Sbjct: 25  LFPMK------LYQLGKKLFWDPANIDLSKDAEDWK---KLNDLEKMFIINVGSKFAAGE 75

Query: 94  SLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
             VA   + ++         E   YL +  +EE+ H   F+       ++  E  + Y +
Sbjct: 76  EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFD--IVNVMEDLSAYTK 133

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
             S     N+   + + L    +      + +  ++ +  + ++ EG+    G+     +
Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQI 189

Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A+    I  DES H+ FGI +I ++  E      K        +   A  
Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKTAMDHINYLAPYAIG 249

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           +        +      L       Y + + N R   I 
Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287


>gi|169631086|ref|YP_001704735.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           abscessus ATCC 19977]
 gi|238055304|sp|B1MHK0|RIR2H_MYCA9 RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|169243053|emb|CAM64081.1| Ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           abscessus]
          Length = 313

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 88/263 (33%), Gaps = 17/263 (6%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P  +    D A W+S   LT+ ER    R    F + E  V       ++  R
Sbjct: 27  GNAKFWDPAGIDFSRDRADWES---LTERERDYATRLCAQFIAGEESVTQDIQPFMSAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ E            +     +   + 
Sbjct: 84  AEGRLGDEMYLTQFAFEEAKHTQVFRLWLDAVGVSED-------LHGYLDDLPAYREIFF 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
             L           +    ++    +  V EGM   TG+     +      + G+ E   
Sbjct: 137 DRLPDALGMLAADPSPAAQVRASVTYNHVVEGMLALTGYFAWHKICVDRGILPGMQELVH 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I  DE  H+ +G     +    +       F+ +   ++  A  L              
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDA-NWSVFEARMNELIPIALRLTEEGFELYGDDTPF 255

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
           GL+     ++MQ+ A++   + G
Sbjct: 256 GLSLD---EFMQYSADKGMRRFG 275


>gi|294994707|ref|ZP_06800398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 210]
          Length = 317

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+    L+DDER    R    F + E  V       ++  R
Sbjct: 27  GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ E            +     +   + 
Sbjct: 84  AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
             L           +    ++    +  + EGM   TG+     +      + G+ E  +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I  DE  H+ +G     +    +   WT  F+ +   ++  A  L          +   
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
            L+      ++Q+  ++   + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275


>gi|58338007|ref|YP_194592.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           acidophilus NCFM]
 gi|58255324|gb|AAV43561.1| ribonucleotide reductase [Lactobacillus acidophilus NCFM]
          Length = 311

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 90/298 (30%), Gaps = 29/298 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N +       AW       +  W P  VP+++D   +     L    R  +    
Sbjct: 7   EAINWNDMEDKVDKSAWA---RLNDIIWEPRHVPVKEDKKEF---LQLPSPVRCTLLHVF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
              + S  L   + +  I      PE    L    + E++ + ++ Y++  L   E    
Sbjct: 61  SALSFSSGLQMKSGIEQIKVDAITPEEAAVLNALQYLESIANKSYSYVLRELATPEEVDN 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            F+     P +  K +   +  Q   +     G                V+ E   +++G
Sbjct: 121 AFDWANNSPYLQKKIHILNKIYQRGDALQKKAG---------------NVILETALYHSG 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L L    KMV  AE  +  +R  S    +          +      ++ +     +
Sbjct: 166 FFAPLYLFGQGKMVRTAEIIKLALRGTSFSGIYPGYKFRLGYKKLGKTEQEDLKHWIDNL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
             E    E  +          G    +   YM +  N+    +G    +  T    NP
Sbjct: 226 YDELVKNEEKHIRLLYKG--TGWTEDALH-YMYYSVNKAYLNLGFPGKYPDTSDTINP 280


>gi|153820502|ref|ZP_01973169.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
           cholerae NCTC 8457]
 gi|126508955|gb|EAZ71549.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
           cholerae NCTC 8457]
          Length = 155

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 4/146 (2%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +  +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L D E+ +   NL +    +S+   +  +A+   +S PE   ++   +F E +HS ++ 
Sbjct: 65  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAK 158
           +II ++  D   +F+   E   I  +
Sbjct: 125 HIIRNIVNDPAVVFDDIVENEHIIKR 150


>gi|294887656|ref|XP_002772196.1| ribonucleoside-diphosphate reductase small chain, putative
           [Perkinsus marinus ATCC 50983]
 gi|239876179|gb|EER04012.1| ribonucleoside-diphosphate reductase small chain, putative
           [Perkinsus marinus ATCC 50983]
          Length = 82

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           Y     + W   E+ +  DL  W++   LT +E+  IK  L FFA+S+ +V  N+     
Sbjct: 1   YKQHEASFWTAEEIDLGQDLRDWET---LTKNEQHFIKNVLAFFAASDGIVMENLASKFS 57

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHT 130
             +  PE R +   Q   E +HS T
Sbjct: 58  CEVQIPEARAFYGFQTGMETIHSET 82


>gi|306806029|ref|ZP_07442697.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu007]
 gi|306970425|ref|ZP_07483086.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu009]
 gi|308347482|gb|EFP36333.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu007]
 gi|308352109|gb|EFP40960.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu009]
          Length = 323

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+    L+DDER    R    F + E  V       ++  R
Sbjct: 27  GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ E            +     +   + 
Sbjct: 84  AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
             L           +    ++    +  + EGM   TG+     +      + G+ E  +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I  DE  H+ +G     +    +   WT  F+ +   ++  A  L          +   
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
            L+      ++Q+  ++   + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275


>gi|66394974|ref|YP_240948.1| ORF025 [Staphylococcus phage G1]
 gi|62636996|gb|AAX92107.1| ORF025 [Staphylococcus phage G1]
          Length = 265

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 87/251 (34%), Gaps = 19/251 (7%)

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANWAL 163
           H   P+ +         E +H+ ++ +I T+L  ++   +       E   +  KA +  
Sbjct: 7   HEPRPKYQAVFAFMGGMEEIHAKSYSHIFTTLLSNKETSYLLDTWVEENDFLKVKAQFIG 66

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
            Y   L  P+ T   +           V     E   FY+GF   L L    +M      
Sbjct: 67  YYYDQLLKPNPTIFDR-------YMAKVASAFLESALFYSGFYYPLLLAGRGQMTQSGAI 119

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
              I +DE+ H +                  K+  +++  +L      E+AY H      
Sbjct: 120 IYKITQDEAYHGSAVGLTAQYDYNLLTEEEKKQADKETYELLDILYTNEVAYTHSLYDPL 179

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK--KEKNFFETRV 340
            +   +     Y+Q+  NR    +G E  F     NP   +    ++   +  +FF  + 
Sbjct: 180 EL---SEDVINYVQYNFNRALQNLGREDYFNPEPYNPI--VENQTNVDRLRNVDFFSGKA 234

Query: 341 TEYQQGAELKW 351
            +Y++   +K 
Sbjct: 235 -DYEKSTNIKD 244


>gi|254233615|ref|ZP_04926941.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis C]
 gi|124603408|gb|EAY61683.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis C]
          Length = 321

 Score = 78.7 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+    L+DDER    R    F + E  V       ++  R
Sbjct: 27  GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ E            +     +   + 
Sbjct: 84  AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
             L           +    ++    +  + EGM   TG+     +      + G+ E  +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I  DE  H+ +G     +    +   WT  F+ +   ++  A  L          +   
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
            L+      ++Q+  ++   + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275


>gi|284033796|ref|YP_003383727.1| ribonucleotide reductase [Kribbella flavida DSM 17836]
 gi|283813089|gb|ADB34928.1| ribonucleotide reductase [Kribbella flavida DSM 17836]
          Length = 319

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 81/269 (30%), Gaps = 21/269 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
            +       W P ++    D   W+    LT +E+         F + E  V       L
Sbjct: 30  LFDKGNRKFWNPRDLDFSQDAEDWQ---RLTPNEKDNAMMLCAQFIAGEEAVTEDLQPFL 86

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
                        YL +  FEEA H+  F+  + ++G+ E            +     + 
Sbjct: 87  QAMAAEGRFGDEMYLTQFCFEEAKHTAVFRLWLDAVGVTED-------LHRYVENNPGYR 139

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIA 221
             + + L     +     +    ++    +  V EG    TG+     L      + G+ 
Sbjct: 140 AIFYEALPVALKSLADDPSPANQVRASVTYNHVVEGTLALTGYHAWNLLCTGRRILPGMQ 199

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  ++I  DE  H+ +G     +    +   W     +     + +     +      M 
Sbjct: 200 ELIRHIGDDERRHMAWGTFTCRRHVAADAANW-----KVVTDTMEDLLPHALVQIQWAME 254

Query: 282 KGFVG---LNAPSCEQYMQFIANRRCHQI 307
                   ++  +   Y    A RR   I
Sbjct: 255 NSPELPPEIDPTALMTYAGDRATRRLGAI 283


>gi|15839613|ref|NP_334650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis CDC1551]
 gi|31791410|ref|NP_853903.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           bovis AF2122/97]
 gi|121636145|ref|YP_976368.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148821426|ref|YP_001286180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis F11]
 gi|215406230|ref|ZP_03418411.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|215414101|ref|ZP_03422758.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215425440|ref|ZP_03423359.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T92]
 gi|215433154|ref|ZP_03431073.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|215448517|ref|ZP_03435269.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|218755972|ref|ZP_03534768.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis GM 1503]
 gi|224988618|ref|YP_002643305.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253797156|ref|YP_003030157.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis KZN 1435]
 gi|260199231|ref|ZP_05766722.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T46]
 gi|260203377|ref|ZP_05770868.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis K85]
 gi|289441609|ref|ZP_06431353.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T46]
 gi|289552485|ref|ZP_06441695.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis KZN 605]
 gi|289572811|ref|ZP_06453038.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis K85]
 gi|289748002|ref|ZP_06507380.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289748709|ref|ZP_06508087.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T92]
 gi|289756298|ref|ZP_06515676.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289760339|ref|ZP_06519717.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|289764349|ref|ZP_06523727.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis GM 1503]
 gi|297632713|ref|ZP_06950493.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN 4207]
 gi|297729687|ref|ZP_06958805.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN R506]
 gi|298527626|ref|ZP_07015035.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306779065|ref|ZP_07417402.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu002]
 gi|306782854|ref|ZP_07421176.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu003]
 gi|306787222|ref|ZP_07425544.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu004]
 gi|306791778|ref|ZP_07430080.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu005]
 gi|306801818|ref|ZP_07438486.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu008]
 gi|313657013|ref|ZP_07813893.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis KZN V2475]
 gi|81422934|sp|Q7U2I1|RIR2H_MYCBO RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|238055305|sp|A1KF53|RIR2H_MYCBP RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|13879730|gb|AAK44464.1| ribonucleoside-diphosphate reductase, beta subunit, putative
           [Mycobacterium tuberculosis CDC1551]
 gi|31616995|emb|CAD93102.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB
           (RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium
           bovis AF2122/97]
 gi|121491792|emb|CAL70254.1| Probable ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148719953|gb|ABR04578.1| ribonucleoside-diphosphate reductase beta subunit nrdB
           [Mycobacterium tuberculosis F11]
 gi|224771731|dbj|BAH24537.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253318659|gb|ACT23262.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis KZN 1435]
 gi|289414528|gb|EFD11768.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T46]
 gi|289437117|gb|EFD19610.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis KZN 605]
 gi|289537242|gb|EFD41820.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis K85]
 gi|289688530|gb|EFD56018.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis 02_1987]
 gi|289689296|gb|EFD56725.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T92]
 gi|289696885|gb|EFD64314.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis EAS054]
 gi|289711855|gb|EFD75871.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis GM 1503]
 gi|289715903|gb|EFD79915.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T85]
 gi|298497420|gb|EFI32714.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308327916|gb|EFP16767.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu002]
 gi|308332374|gb|EFP21225.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu003]
 gi|308336125|gb|EFP24976.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu004]
 gi|308339757|gb|EFP28608.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu005]
 gi|308351381|gb|EFP40232.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu008]
 gi|323717223|gb|EGB26432.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis CDC1551A]
 gi|326905988|gb|EGE52921.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis W-148]
 gi|328456943|gb|AEB02366.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis KZN 4207]
          Length = 314

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+    L+DDER    R    F + E  V       ++  R
Sbjct: 27  GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ E            +     +   + 
Sbjct: 84  AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
             L           +    ++    +  + EGM   TG+     +      + G+ E  +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I  DE  H+ +G     +    +   WT  F+ +   ++  A  L          +   
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
            L+      ++Q+  ++   + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275


>gi|268320098|ref|YP_003293754.1| ribonucleoside-diphosphate reductase beta chain [Lactobacillus
           johnsonii FI9785]
 gi|262398473|emb|CAX67487.1| ribonucleoside-diphosphate reductase beta chain [Lactobacillus
           johnsonii FI9785]
          Length = 313

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 89/275 (32%), Gaps = 22/275 (8%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
              K    L  +E+ +I  + G    S +L     +  I +   N E         + E+
Sbjct: 41  KDQKEFLHLPKNEQTVILHSFGSLTLSSTLQMKVALSEIKKDAENSEEVAVYNALQYLES 100

Query: 126 VHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +++  + Y++        + + +    + P +  K  +     Q+ ++            
Sbjct: 101 INNKAYSYVLAEFSDSKKQEDAYEWANQNPYLQKKMKFLNTVYQSGNAIQKK-------- 152

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
                      +  G++  + F  +   G+  K+   AE  +Y +R  +L+  +      
Sbjct: 153 ------AAHVFLSTGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITTLNGIYTGIKFR 205

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           +   +       +       +       E+++         +       E Y+ +  N+ 
Sbjct: 206 RDFFKLSKKEQNKVHDWVYDLCDNLYDNELSHIKLLYQNTDL---EDKVEHYIHYTLNKA 262

Query: 304 CHQIGLEPLFKYTENPFPWM--SEVIDLKKEKNFF 336
              +G EP +         +  + +++    K+FF
Sbjct: 263 LMNLGQEPKYPENVETLDPILTTGLMESAMIKDFF 297


>gi|306795820|ref|ZP_07434122.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu006]
 gi|308343762|gb|EFP32613.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu006]
          Length = 314

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+    L+DDER    R    F + E  V       ++  R
Sbjct: 27  GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ E            +     +   + 
Sbjct: 84  AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
             L           +    ++    +  + EGM   TG+     +      + G+ E  +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I  DE  H+ +G     +    +   WT  F+ +   ++  A  L          +   
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
            L+      ++Q+  ++   + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275


>gi|260185097|ref|ZP_05762571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis CPHL_A]
 gi|289445765|ref|ZP_06435509.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis CPHL_A]
 gi|289418723|gb|EFD15924.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis CPHL_A]
          Length = 314

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+    L+DDER    R    F + E  V       ++  R
Sbjct: 27  GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ E            +     +   + 
Sbjct: 84  AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
             L           +    ++    +  + EGM   TG+     +      + G+ E  +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I  DE  H+ +G     +    +   WT  F+ +   ++  A  L          +   
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
            L+      ++Q+  ++   + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275


>gi|238618784|ref|YP_002913609.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           islandicus M.16.4]
 gi|238379853|gb|ACR40941.1| ribonucleotide reductase [Sulfolobus islandicus M.16.4]
          Length = 308

 Score = 78.3 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 96/278 (34%), Gaps = 18/278 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K       Y       W P  + +  D   WK    L D E++ I      FA+ E
Sbjct: 25  LFPMK------LYQLGKKLFWDPANIDLSKDAEDWK---KLNDLEKMFIINVGSKFAAGE 75

Query: 94  SLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
             VA   + ++         E   YL +  +EE+ H   F+    ++ +   E  + Y +
Sbjct: 76  EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFDAVNV--MEDLSAYTK 133

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
             S     N+   + + L    +      + +  +  +  + ++ EG+    G+     +
Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPENQVGAVVTYNLIVEGVAAEGGYNIFRQI 189

Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A+    I  DES H+ FGI +I ++  E      K        +   A  
Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKAAMDHINYLAPYAIG 249

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           +        +      L       Y + + N R   I 
Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287


>gi|226438223|pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS
          Length = 323

 Score = 77.9 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+    L+DDER    R    F + E  V       ++  R
Sbjct: 36  GNAKFWHPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 92

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ E            +     +   + 
Sbjct: 93  AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 145

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
             L           +    ++    +  + EGM   TG+     +      + G+ E  +
Sbjct: 146 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 205

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I  DE  H+ +G     +    +   WT  F+ +   ++  A  L          +   
Sbjct: 206 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 264

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
            L+      ++Q+  ++   + G
Sbjct: 265 DLSKDD---FLQYSTDKGMRRFG 284


>gi|254549173|ref|ZP_05139620.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
          Length = 311

 Score = 77.9 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+    L+DDER    R    F + E  V       ++  R
Sbjct: 27  GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ E            +     +   + 
Sbjct: 84  AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
             L           +    ++    +  + EGM   TG+     +      + G+ E  +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I  DE  H+ +G     +    +   WT  F+ +   ++  A  L          +   
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
            L+      ++Q+  ++   + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275


>gi|15607374|ref|NP_214747.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Rv]
 gi|148659997|ref|YP_001281520.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|167968770|ref|ZP_02551047.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis H37Ra]
 gi|306774323|ref|ZP_07412660.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu001]
 gi|306974656|ref|ZP_07487317.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu010]
 gi|307082365|ref|ZP_07491535.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu011]
 gi|307082709|ref|ZP_07491822.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu012]
 gi|81556745|sp|P96416|RIR2H_MYCTU RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|238055310|sp|A5TYV8|RIR2H_MYCTA RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|1871607|emb|CAB07000.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB
           (RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|148504149|gb|ABQ71958.1| ribonucleoside-diphosphate reductase subunit beta NrdB
           [Mycobacterium tuberculosis H37Ra]
 gi|308217156|gb|EFO76555.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu001]
 gi|308356059|gb|EFP44910.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu010]
 gi|308360014|gb|EFP48865.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu011]
 gi|308367580|gb|EFP56431.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis SUMu012]
          Length = 314

 Score = 77.9 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+    L+DDER    R    F + E  V       ++  R
Sbjct: 27  GNAKFWHPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ E            +     +   + 
Sbjct: 84  AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
             L           +    ++    +  + EGM   TG+     +      + G+ E  +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I  DE  H+ +G     +    +   WT  F+ +   ++  A  L          +   
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
            L+      ++Q+  ++   + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275


>gi|300362937|ref|ZP_07059107.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri JV-V03]
 gi|300352987|gb|EFJ68865.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri JV-V03]
          Length = 314

 Score = 77.9 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 87/269 (32%), Gaps = 24/269 (8%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P  VP+  D   +   + L   E+ M+  + G  A S +L     +  I +   N E   
Sbjct: 34  PRRVPIHKDRDEF---SHLPKAEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 90

Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSP 172
                 + E++++  + + ++     +    E FN   + P +  K              
Sbjct: 91  VYNALQYLESINNKAYGHALSEFSTSDEQRDEAFNWANQNPYLQKKM------------- 137

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                T    +  +Q       +  G++  + F  +   G+  K+   AE  +Y +R  +
Sbjct: 138 -RLLNTVYQSENAIQKKAAHVFLSTGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITT 195

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
           L+  +      +   +      +        +       E+ + H        GL     
Sbjct: 196 LNGIYTGIKFRRDYFKLSKEEQENVHNWVYGLCDRLYANELNHIHLLYED--TGL-EDKV 252

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP 321
           E Y+ +  N+    +G EP +        
Sbjct: 253 EHYIHYTLNKALMNLGQEPKYPENVETLD 281


>gi|323167149|gb|EFZ52867.1| ribonucleoside-diphosphate reductase 2 subunit beta domain protein
           [Shigella sonnei 53G]
          Length = 150

 Score = 77.9 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
           +      K+   A+  + I+RDE++H  +      +   +      +E +  +  +L E 
Sbjct: 1   MYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLEL 60

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSE 325
              E+ Y  E   +      A   + ++ + AN+    +G EPLF       NP    + 
Sbjct: 61  YDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAAL 117

Query: 326 VIDLKKEKNFFETRVTEYQQGAELK 350
             +  +  +FF    + Y  G  ++
Sbjct: 118 SPNADENHDFFSGSGSSYVMGKAVE 142


>gi|118465897|ref|YP_884058.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium 104]
 gi|254777375|ref|ZP_05218891.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|238055303|sp|A0QMC0|RIR2H_MYCA1 RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|118167184|gb|ABK68081.1| ribonucleotide-diphosphate reductase beta subunit [Mycobacterium
           avium 104]
          Length = 311

 Score = 77.9 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 94/264 (35%), Gaps = 20/264 (7%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+    LTDDER    R    F + E  V       +A  R
Sbjct: 27  GNAKFWNPADIDFSRDRADWE---RLTDDERSYATRLCAEFIAGEESVTQDIQPFMAAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H   F+  + ++G+ +            +    ++   + 
Sbjct: 84  AEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTDD-------LHHFLDDVPSYRTIFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
           + L           +    ++    +  + EGM   TG+     +      + G+ E  +
Sbjct: 137 EELPDCLNALTIDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY-AHETMPKGF 284
            I  DE  H+ +G     +    +   W     + +  M     L+E  +  ++ MP   
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFALYDPMPFDL 256

Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
                 S +++M + +++   + G
Sbjct: 257 ------SVDEFMAYASDKGMRRFG 274


>gi|41409770|ref|NP_962606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           avium subsp. paratuberculosis K-10]
 gi|81413257|sp|Q73TP6|RIR2H_MYCPA RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|41398602|gb|AAS06222.1| NrdB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 311

 Score = 77.5 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 94/264 (35%), Gaps = 20/264 (7%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+    LTDDER    R    F + E  V       +A  R
Sbjct: 27  GNAKFWNPADIDFSRDRADWE---RLTDDERSYATRLCAEFIAGEESVTQDIQPFMAAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H   F+  + ++G+ +            +    ++   + 
Sbjct: 84  AEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTDD-------LHHFLDDVPSYRTIFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
           + L           +    ++    +  + EGM   TG+     +      + G+ E  +
Sbjct: 137 EELPDCLNALTIDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY-AHETMPKGF 284
            I  DE  H+ +G     +    +   W     + +  M     L+E  +  ++ MP   
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFALYDPMPFDL 256

Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
                 S +++M + +++   + G
Sbjct: 257 ------SVDEFMAYASDKGMRRFG 274


>gi|145223648|ref|YP_001134326.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           gilvum PYR-GCK]
 gi|315443974|ref|YP_004076853.1| ribonucleotide reductase subunit beta [Mycobacterium sp. Spyr1]
 gi|238055306|sp|A4TB76|RIR2H_MYCGI RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|145216134|gb|ABP45538.1| putative ribonucleoside-diphosphate reductase (beta chain)
           [Mycobacterium gilvum PYR-GCK]
 gi|315262277|gb|ADT99018.1| ribonucleotide reductase, beta subunit [Mycobacterium sp. Spyr1]
          Length = 312

 Score = 77.5 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 94/263 (35%), Gaps = 18/263 (6%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+S   L+  ER    R    F + E  V       +A  R
Sbjct: 27  GNAKFWDPADIDFSRDRADWES---LSTMERDWATRLCAEFIAGEEAVTQDIQPFMAAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ E            +     +   + 
Sbjct: 84  AEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGITED-------LQGYLDDLPAYRQMFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
           + L +      T  + Q  ++    +  V EGM   TG+     +    + + G+ E  +
Sbjct: 137 EELPASLDALATDPSPQAQVRASVTYNHVIEGMMALTGYYAWHRICVDRHILPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I  DE  H+ +G     +    +   WT  F+ +   ++  A       A     +   
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FEDRMNELIPLALQNTDD-AFALYDEIPF 254

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
           GL     +QY    A++   + G
Sbjct: 255 GLTIEEFQQY---AADKGMRRFG 274


>gi|291092706|gb|ADD74390.1| ribonucleotide reductase small subunit [uncultured virus]
          Length = 181

 Score = 77.1 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 22/200 (11%)

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
              K  L FFA S+ +V  N+V   Y  +   E R +   QA  E +H+  +  +I +L 
Sbjct: 1   DFFKCILAFFAPSDGIVGENLVTRFYEMVVYTEARYFYAFQAAMENIHAEVYSQLIKTLI 60

Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
            +E E   +F+ +   P IT K  WA Q+ +              +  F++ L  F VV 
Sbjct: 61  PNEDEQRSIFSSFMTTPGITEKTRWAKQWLER------------ENLSFVERLVAFAVV- 107

Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           EG+ F   FA I  L +   M G+    + I RDE LH +F   +  +       +  K 
Sbjct: 108 EGLLFSGSFASIFWLKKRGLMHGLTFSNELISRDEGLHCDFACLLYTKH------IVHKL 161

Query: 257 FQQKSRTMLHEATLLEIAYA 276
                  ++ EA   E  + 
Sbjct: 162 PNNVIYNIVREAVHAESIFF 181


>gi|284174067|ref|ZP_06388036.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           solfataricus 98/2]
 gi|261600997|gb|ACX90600.1| ribonucleotide reductase [Sulfolobus solfataricus 98/2]
          Length = 308

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 95/278 (34%), Gaps = 18/278 (6%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           L P+K       Y       W P  + +  D   WK    L D E++ I      FA+ E
Sbjct: 25  LFPMK------LYQLGKRLFWDPANIDLSKDAEDWK---KLNDLEKMFIINVGSKFAAGE 75

Query: 94  SLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
             VA   + ++         E   YL +  +EE+ H   F+    ++ + E         
Sbjct: 76  EAVALDLHPLIVTLVKEGKVEEVMYLEQFVYEESKHVEAFRRFFDAVNVIE------DLS 129

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
             +     N+   + + L    +      + +  ++ +  + +V EG+    G+     +
Sbjct: 130 AYTKDLSPNYRKIFYEELPKAMWNLSKDPSPENQVKAVVTYNLVVEGIAAEGGYNIFRRI 189

Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
                 + G+A+    I  DES H+ FG+ +I ++  E+     K        +   A  
Sbjct: 190 TNTRKILPGLAKMINLIATDESRHIAFGVYLIARLVKEHGEGIYKVAMDHINYLAPYAIG 249

Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           +        +      L       Y + + N R   I 
Sbjct: 250 IFSEPTMPQVTNLPFDLTNMELVDYAKKLLNTRIDAIN 287


>gi|14970916|emb|CAC44510.1| putative ribonucleotide reductase small subunit [Sphaerechinus
           granularis]
          Length = 141

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 16/154 (10%)

Query: 84  RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--- 140
             L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I +      
Sbjct: 1   HVLAFFAASDGIVNENLVERFSQEVQIAEARCFYGFQIAIENIHSEMYSLLIDAYIKDAV 60

Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
               LFN    +P +T KA WAL +  +  S  F T              V +   EG++
Sbjct: 61  QRDYLFNAVETMPCVTKKAQWALDWISS-DSADFGT------------RIVAFAAVEGIF 107

Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           F   FA I  L +   M G+    + I RDE LH
Sbjct: 108 FSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLH 141


>gi|42519734|ref|NP_965664.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           johnsonii NCC 533]
 gi|41584023|gb|AAS09630.1| hypothetical protein LJ_0591 [Lactobacillus johnsonii NCC 533]
          Length = 313

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 89/275 (32%), Gaps = 22/275 (8%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
              K    L  +E+ +I  + G    S +L     +  I +   N E         + E+
Sbjct: 41  KDQKEFLHLPKNEQTVILHSFGSLTLSSTLQMKVALSEIKKDAENSEEVAVYNALQYLES 100

Query: 126 VHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +++  + Y++        + + +    + P +  K                   T     
Sbjct: 101 INNKAYSYVLAEFSDSKKQEDAYEWANQNPYLQKKMK--------------LLNTVYQSG 146

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             +Q       +  G++  + F  +   G+  K+   AE  +Y +R  +L+  +      
Sbjct: 147 NTIQKKAAHVFLSTGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITTLNGIYTGIKFR 205

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           +   + P    K+       +  +    E+ +         +       E Y+ +  N+ 
Sbjct: 206 RDFFKLPKKEQKKVHDWVYDLCDKLYDNELRHIKLLYKHTDL---EDKVEHYIHYTLNKA 262

Query: 304 CHQIGLEPLFKYTENPFPWM--SEVIDLKKEKNFF 336
              +G EP +         +  + +++    ++FF
Sbjct: 263 LMNLGQEPKYPENVETLDPILTTGLMESAMIEDFF 297


>gi|240168452|ref|ZP_04747111.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           kansasii ATCC 12478]
          Length = 314

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 91/265 (34%), Gaps = 21/265 (7%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    +   W   + LTD ER    R    F + E  V       +A  R
Sbjct: 27  GNAKFWDPADIDFSREREDW---DRLTDTERDYAIRLCAQFVAGEEAVTEDIQPFMAAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + S+G+              +    ++   + 
Sbjct: 84  AEGRLADEMYLTQFAFEEAKHTQVFRMWLDSVGV-------TGDLHGYLDDLPSYRQMFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
             L        T  +    ++    +  + EGM   TG+     +      + G+    +
Sbjct: 137 DELPECLSALTTDPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERGILPGMQRLVR 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLW--TKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
           +I  DE  H+ +G     +    N   W   +E   +   +  + T    A   + MP  
Sbjct: 197 HISDDERRHMAWGTFTCRRHVAANDANWTVFEERMNELIPLALQLTQDGFALYGDPMPFD 256

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIG 308
                  S E++M + +++   + G
Sbjct: 257 L------SVEEFMTYSSDKGMRRFG 275


>gi|329667981|gb|AEB93929.1| ribonucleoside-diphosphate reductase beta chain [Lactobacillus
           johnsonii DPC 6026]
          Length = 313

 Score = 76.7 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 89/275 (32%), Gaps = 22/275 (8%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
              K    L  +E+ +I  + G    S +L     +  I +   N E         + E+
Sbjct: 41  KDQKEFLHLPKNEQTVILHSFGSLTLSSTLQMKVALSEIKKDAENSEEVAVYNALQYLES 100

Query: 126 VHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +++  + Y++        + + +    + P +  K                   T     
Sbjct: 101 INNKAYSYVLAEFSDSKKQEDAYEWANQNPYLQKKMK--------------LLNTVYQSG 146

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
             +Q       +  G++  + F  +   G+  K+   AE  +Y +R  +L+  +      
Sbjct: 147 TTIQKKAAHVFLSTGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITTLNGIYTGIKFR 205

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           +   + P    K+       +  +    E+ +         +       E Y+ +  N+ 
Sbjct: 206 RDFFKLPKKEQKKVHDWVYDLCDKLYDNELRHIKLLYKHTDL---EDKIEHYIHYTLNKA 262

Query: 304 CHQIGLEPLFKYTENPFPWM--SEVIDLKKEKNFF 336
              +G EP +         +  + +++    ++FF
Sbjct: 263 LMNLGQEPKYPENVETLDPILTTGLMESAMIEDFF 297


>gi|116630259|ref|YP_815456.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           gasseri ATCC 33323]
 gi|116095841|gb|ABJ60993.1| ribonucleoside-diphosphate reductase class Ib beta subunit
           [Lactobacillus gasseri ATCC 33323]
          Length = 320

 Score = 76.4 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 86/269 (31%), Gaps = 24/269 (8%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P  VP+ +D   +   + L   E+ M+  + G  A S +L     +  I +   N E   
Sbjct: 40  PRRVPIHEDRDEF---SHLPKTEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 96

Query: 116 YLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172
                 + E++++  + + +T          E FN   + P +  K              
Sbjct: 97  VYNALQYLESINNKAYGHALTEFSTSNEQRDEAFNWANQNPYLQKKM------------- 143

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                T       +Q       +  G++  + F  +   G+  K+   AE  +Y +R  +
Sbjct: 144 -RLLNTVYQSDNAIQKKAAHVFISTGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITT 201

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
           L+  +      +          K   +    +       E+ + H        GL     
Sbjct: 202 LNGIYTGIKFRRDFFNLSKEEQKNIHKWVYDLCDRLYANELNHIHLLYED--TGL-EDKV 258

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP 321
           E Y+ +  N+    +G EP +        
Sbjct: 259 EHYIHYTLNKALMNLGQEPKYPENVETLD 287


>gi|238853136|ref|ZP_04643525.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 202-4]
 gi|238834244|gb|EEQ26492.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 202-4]
          Length = 330

 Score = 76.4 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 86/269 (31%), Gaps = 24/269 (8%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P  VP+  D   +   + L   E+ M+  + G  A S +L     +  I +   N E   
Sbjct: 34  PRRVPIHKDRDEF---SHLPKAEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 90

Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSP 172
                 + E++++  + + ++     +    E FN   + P +  K        Q+    
Sbjct: 91  VYNALQYLESINNKAYGHALSEFSTSDEQRDEAFNWANQNPYLQKKMRLLNTVYQS---- 146

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                    +    +     ++   G++  + F  +   G+  K+   AE  +Y +R  +
Sbjct: 147 ---------ENAIQKKAAHVFLS-TGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITT 195

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
           L+  +      +   +      +        +       E+ + H               
Sbjct: 196 LNGIYTGIKFRRDYFKLSKEEQENVHNWVYGLCDRLYANELNHIHLLYEDTGF---EDKV 252

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP 321
           E Y+ +  N+    +G EP +        
Sbjct: 253 EHYIHYTLNKALMNLGQEPKYPENVETLD 281


>gi|311110156|ref|ZP_07711553.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri MV-22]
 gi|311065310|gb|EFQ45650.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri MV-22]
          Length = 332

 Score = 76.4 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 86/269 (31%), Gaps = 24/269 (8%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P  VP+ +D   +   + L   E+ M+  + G  A S +L     +  I +   N E   
Sbjct: 34  PRRVPIHEDRDEF---SHLPKTEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 90

Query: 116 YLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172
                 + E++++  + + +T          E FN   + P +  K              
Sbjct: 91  VYNALQYLESINNKAYGHALTEFSTSNEQRDEAFNWANQNPYLQKKM------------- 137

Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
                T       +Q       +  G++  + F  +   G+  K+   AE  +Y +R  +
Sbjct: 138 -RLLNTVYQSDNAIQKKAAHVFISTGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITT 195

Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
           L+  +      +          K   +    +       E+ + H        GL     
Sbjct: 196 LNGIYTGIKFRRDFFNLSKEEQKNIHKWVYDLCDRLYANELNHIHLLYED--TGL-EDKV 252

Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP 321
           E Y+ +  N+    +G EP +        
Sbjct: 253 EHYIHYTLNKALMNLGQEPKYPENVETLD 281


>gi|300790300|ref|YP_003770591.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
           mediterranei U32]
 gi|299799814|gb|ADJ50189.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
           mediterranei U32]
          Length = 322

 Score = 76.0 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 88/266 (33%), Gaps = 15/266 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
            ++      W P ++    +   W +   L  +++      +  F + E  V       +
Sbjct: 29  LFVKGNKKFWNPADIDFSREREGWDT---LNPEQQRSTTYLVAQFIAGEEAVTEDIQPFM 85

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
                        YL +  FEEA H+  F+  + ++GL E          P +    ++ 
Sbjct: 86  RAMSATGRFGDEMYLTQFCFEEAKHTEVFRRWMDAVGLTED-------LHPFVAENPHYR 138

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIA 221
             + + L           +    ++    +  V EG    TG+     +  + + + G+ 
Sbjct: 139 KLFYEELPQSLRALEDDPSPLNQIRASVTYNHVIEGSLALTGYYSWQLICTQHDILPGMQ 198

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  + I  DE  H+ +G     +    +  LW    Q+    + H   +  I +  +   
Sbjct: 199 ELVRRIGDDERRHMAWGTFTCRRHVAADDSLWDAVLQRMGELLPHALNM--IQWVQDQFE 256

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQI 307
           +     +     QY    A RR   I
Sbjct: 257 ELPFDNDPQEIVQYAADRAQRRLGAI 282


>gi|126437012|ref|YP_001072703.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. JLS]
 gi|238055308|sp|A3Q4Y5|RIR2H_MYCSJ RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|126236812|gb|ABO00213.1| putative ribonucleotide reductase small chain [Mycobacterium sp.
           JLS]
          Length = 312

 Score = 76.0 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 95/264 (35%), Gaps = 20/264 (7%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+S + L  D      R    F + E  V       +A  R
Sbjct: 27  GNAKFWDPADIDFSKDRADWESLSNLERDWA---TRLCAQFIAGEEAVTQDIQPFMAAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ +            +    ++   + 
Sbjct: 84  AEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGMTDD-------LQCYLDDLPSYRQMFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
           + L +      T  +    ++    +  V EGM   TG+     +      + G+ E  +
Sbjct: 137 EELPASLEALATDPSPAAQVRASATYNHVIEGMMALTGYYAWHRICVDRKVLPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
            I  DE  H+ +G       +  ++ +    E +      L  +   +    ++ +P GF
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWEVFENRMNELIPLALSNTDDSFALYDEIPFGF 256

Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
                   E++ Q+ A++   + G
Sbjct: 257 AK------EEFQQYAADKGMRRFG 274


>gi|226311199|ref|YP_002771093.1| hypothetical protein BBR47_16120 [Brevibacillus brevis NBRC 100599]
 gi|226094147|dbj|BAH42589.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 297

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 95/256 (37%), Gaps = 16/256 (6%)

Query: 43  WEKYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
           ++ Y  A     W P ++    D   + + N   + +   + R  GF    E++  + + 
Sbjct: 22  YQLYQKAKRYGIWNPQDIDFTQDREDYANMN--PEQKEETLGRIAGFLGGEEAVTLDLLP 79

Query: 102 LAI-YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
           L +        E   +L    FEEA H+  F+ ++ ++G                     
Sbjct: 80  LIMVIAEEGRLEEEMFLTTFLFEEAKHTEFFRLVLDNIGES---------GDLHHFHDDV 130

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FAQILSLGRANKMVG 219
           +   + + L +      T  + +   +   V+ +  EG+   TG +A   +L +   M G
Sbjct: 131 YKRIFHEILPNALHRLLTDKSPEAIAEASTVYNMFVEGVLAETGYYAFYEALSKTGLMPG 190

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
           + +   Y+  DES H+++G  ++ ++  E+ H++    ++               +  + 
Sbjct: 191 LMQGIGYLKTDESRHISYGTFLLQRLICEHRHIYDVIAKKMDELA--PMATHLYDWMDDP 248

Query: 280 MPKGFVGLNAPSCEQY 295
                 G+     +Q+
Sbjct: 249 QGVSAFGVKITDLKQF 264


>gi|118470345|ref|YP_884771.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           smegmatis str. MC2 155]
 gi|238055307|sp|A0QPD3|RIR2H_MYCS2 RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|118171632|gb|ABK72528.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
           smegmatis str. MC2 155]
          Length = 320

 Score = 75.6 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 91/263 (34%), Gaps = 17/263 (6%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+    LT+ ER    R    F + E  V       ++  R
Sbjct: 27  GNAKFWDPADIDFSRDRADWE---ALTEREREYATRLCAEFIAGEEAVTKDIQPFMSAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ +            I     +   + 
Sbjct: 84  AEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGVTDD-------LHSLIEEVPAYVQIFC 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
           + L +      +  +    ++   V+  V EGM   TG+     +      + G+ E  +
Sbjct: 137 EELPAALEALTSDPSPAAQVRASVVYNHVVEGMLALTGYYAWHRICVDRGILPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I  DE  H+ +G     +    +       F+     ++  A  L              
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDA-NWAVFETHMNELIPVALRLTQEGFALYGDDIPF 255

Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
           GL      +++Q+ ++R   + G
Sbjct: 256 GLEEG---EFLQYSSDRGMRRFG 275


>gi|295693640|ref|YP_003602250.1| ribonucleotide reductase [Lactobacillus crispatus ST1]
 gi|295031746|emb|CBL51225.1| Ribonucleotide reductase [Lactobacillus crispatus ST1]
          Length = 311

 Score = 75.2 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 91/296 (30%), Gaps = 29/296 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +       AW       +  W P  VP+++D   +     L    +  +    G  
Sbjct: 10  NWNDMEDRVDKSAWS---RLNDIIWEPRNVPVREDKKEF---LQLDKPVQDALLHAFGAL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
           + S  L   N +  I      PE    L    + E++ +  + Y+I  L       ++ N
Sbjct: 64  SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNTAKDVIN 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  K     +  Q   +                      V+ E   +++GF  
Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKK---------------AANVILETALYHSGFYA 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L L    KMV  AE  +  +R  S    +          +       E ++    +   
Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFGGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDM 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
               E  +  E M KG   +       Y+ +  N+    +G    +  T    NP 
Sbjct: 229 LIDNEKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281


>gi|70607897|ref|YP_256767.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           acidocaldarius DSM 639]
 gi|68568545|gb|AAY81474.1| ribonucleoside-diphosphate reductase [Sulfolobus acidocaldarius DSM
           639]
          Length = 314

 Score = 75.2 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 92/239 (38%), Gaps = 19/239 (7%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           D N   P+K       Y       W P ++    D   WK    L+ DE+  +   +  F
Sbjct: 26  DWNT-FPMK------LYQIGKRLFWDPAKIDFSKDKEDWK---KLSKDEKNYLLNIVSLF 75

Query: 90  ASSESLVANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147
            + E  VA +   +++   +    E   YL + AFEEA H+  F+    SL +++     
Sbjct: 76  MAGEEAVAVDITPLISTMINEGRVEDVIYLEQFAFEEAKHAEAFRRFCDSLEINDDLTIF 135

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-A 206
                P           + + L S  +      + +     +  + +  EG+   +G+  
Sbjct: 136 TTEYNPWYQKI------FYEELPSVMWKLRVDPSPENLAVAVTTYNLYVEGVAAESGYKT 189

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
                   N M G+++    I  DES H+ +G  +I ++ +EN     ++  ++   ++
Sbjct: 190 FKHIFNSLNIMPGLSKTVNLIATDESRHIAYGTYLITRLIVENGESIYRKAIEQFNKLV 248


>gi|262047451|ref|ZP_06020407.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|260572221|gb|EEX28785.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus MV-3A-US]
          Length = 311

 Score = 75.2 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 91/296 (30%), Gaps = 29/296 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +       AW       +  W P  VP+++D   +     L    +  +    G  
Sbjct: 10  NWNDMEDRVDKSAWS---RLNDIIWEPRNVPVREDKKEF---LQLDKPVQDALLHAFGAL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
           + S  L   N +  I      PE    L    + E++ +  + Y+I  L       ++ N
Sbjct: 64  SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNTAKDVIN 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  K     +  Q   +                      V+ E   +++GF  
Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKK---------------AANVILETALYHSGFYA 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L L    KMV  AE  +  +R  S    +          +       E ++    +   
Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDV 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
               E  +  E M KG   +       Y+ +  N+    +G    +  T    NP 
Sbjct: 229 LIDNEKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281


>gi|302530556|ref|ZP_07282898.1| ribonucleotide-diphosphate reductase subunit beta [Streptomyces sp.
           AA4]
 gi|302439451|gb|EFL11267.1| ribonucleotide-diphosphate reductase subunit beta [Streptomyces sp.
           AA4]
          Length = 323

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 88/266 (33%), Gaps = 15/266 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
            ++      W P ++    +   W   + LT +++      +  F + E  V       +
Sbjct: 29  LFVKGNKKFWNPADLDFSKEREGW---DSLTPEQQRSTTYLVAQFIAGEEAVTEDIQPFM 85

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
                        YL +  FEEA H   F+  + ++GLD+            +    ++ 
Sbjct: 86  RAMSATGRFGDEMYLTQFCFEEAKHVEVFRRWMDAVGLDDD-------LHSYVAENPHYR 138

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIA 221
             + + L           +    ++    +  V EG    TG+     +  +   + G+ 
Sbjct: 139 KLFYEELPQSLRALEDDPSPLNQIRASVTYNHVIEGSLALTGYYSWQLICTQNQILPGMQ 198

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
           E  ++I  DE  H+ +G     +    +        Q++   +L  A  + I +  +   
Sbjct: 199 ELVRHIGDDERRHMAWGTFTCRRHVAADDA-MWDAVQERMGELLPHALGM-IQWVQDQFE 256

Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQI 307
           +     +     QY    A RR   I
Sbjct: 257 EVPFDNDPEELLQYAADRAQRRLGAI 282


>gi|108801178|ref|YP_641375.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. MCS]
 gi|119870310|ref|YP_940262.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           sp. KMS]
 gi|123069734|sp|Q1B465|RIR2H_MYCSS RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|238055309|sp|A1UKW4|RIR2H_MYCSK RecName: Full=R2-like ligand binding oxidase; AltName:
           Full=Ribonucleotide reductase R2 subunit homolog;
           AltName: Full=Ribonucleotide reductase small subunit
           homolog
 gi|108771597|gb|ABG10319.1| putative ribonucleoside-diphosphate reductase (beta chain) NrdB
           (ribonucleotide reductase small chain) [Mycobacterium
           sp. MCS]
 gi|119696399|gb|ABL93472.1| putative ribonucleoside-diphosphate reductase [Mycobacterium sp.
           KMS]
          Length = 312

 Score = 74.8 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 95/264 (35%), Gaps = 20/264 (7%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+S + L  D      R    F + E  V       +A  R
Sbjct: 27  GNAKFWDPADIDFSRDRADWESLSNLERDWA---TRLCAQFIAGEEAVTQDIQPFMAAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ +            +    ++   + 
Sbjct: 84  AEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGMTDD-------LQCYLDDLPSYRQMFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
           + L +      T  +    ++    +  V EGM   TG+     +      + G+ E  +
Sbjct: 137 EELPASLEALATDPSPAAQVRASATYNHVIEGMMALTGYYAWHRICVDRKVLPGMQELVR 196

Query: 226 YIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
            I  DE  H+ +G       +  ++ +    E +      L  +   +    ++ +P GF
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWEVFENRMNELIPLALSNTDDSFALYDEIPFGF 256

Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
                   E++ Q+ A++   + G
Sbjct: 257 AK------EEFQQYAADKGMRRFG 274


>gi|298247783|ref|ZP_06971588.1| ribonucleotide reductase [Ktedonobacter racemifer DSM 44963]
 gi|297550442|gb|EFH84308.1| ribonucleotide reductase [Ktedonobacter racemifer DSM 44963]
          Length = 293

 Score = 74.8 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 20/228 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKR-NLGF 88
            + +LP++       Y  A     W P ++ +  D   W+    L +D R  ++   L F
Sbjct: 18  RHDILPMR------LYHKAKKLGTWDPRDIDLSQDCQDWQQ---LAEDPRTRLRNLILSF 68

Query: 89  FASSESLVANNIVLAIY-RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147
            A  E++  + + L +        E   +L    +EE  H+  F+ I+  +   EG+L  
Sbjct: 69  QAGEEAVTLDLLPLIMTVAREGRLEEELFLTTFLWEEGKHTEFFRRILDEVMQAEGDL-- 126

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FA 206
                  +    N    ++  L        T  +     +   ++ ++ EG+   TG F+
Sbjct: 127 -----HGVRTANNTRDLFSDDLPREMNLLLTDPSPVNQARASVLYNMIVEGVLAETGYFS 181

Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
               L + N M G+ +  QYI RDES H+ +G+ +I+++  ++  LW 
Sbjct: 182 FFRLLTQNNIMPGLQQGIQYIKRDESRHIAYGVFLISRLVAQDKSLWP 229


>gi|261418216|ref|YP_003251898.1| ribonucleotide-diphosphate reductase subunit beta [Geobacillus sp.
           Y412MC61]
 gi|319767824|ref|YP_004133325.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
 gi|261374673|gb|ACX77416.1| ribonucleotide reductase [Geobacillus sp. Y412MC61]
 gi|317112690|gb|ADU95182.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
          Length = 302

 Score = 74.8 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 91/272 (33%), Gaps = 26/272 (9%)

Query: 38  KYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           ++   ++ Y  A  N  W P ++    D   +     LT +E++     +  F++ E  V
Sbjct: 17  EHP-MYKLYEKAKRNGKWNPADIDFSQDKEDF---ARLTSEEKIAALPLVAGFSAGEEAV 72

Query: 97  ANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
             +   +          E   +L     +EA H   F      +G+   +L        S
Sbjct: 73  TLDILPMAHALARQGRLEDVMFLTTFMHDEAKHVEMFSRWQQEVGIGAMDL--------S 124

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-QILSLGR 213
           +    ++   + + L        T D+ +  ++   V+ ++ EG    +G+        +
Sbjct: 125 VFHNDHYKRIFYEALPEAMNRLYTDDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKK 184

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----------TKEFQQKSRT 263
           A    G+ +   Y+  DE  H+ FG+  I ++  EN   +                    
Sbjct: 185 AGLFPGLLQGIDYLNMDEGRHIQFGLYTIQRLVNENERYYDLFIQYMDELWPHVVGYVAY 244

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
           +       +       +   +  LN    +Q+
Sbjct: 245 LTELGKRQQQLARTYALEIDYDMLNNYVVKQF 276


>gi|148688625|gb|EDL20572.1| mCG1032193 [Mus musculus]
          Length = 150

 Score = 74.4 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 20/145 (13%)

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P +  KA+WAL++              D +  + + +  F  V EG++F   FA IL L
Sbjct: 1   MPCVKKKADWALRWI------------GDKEAAYGERVVAFAAV-EGIFFSGSFASILWL 47

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            +   M G+    + I RDE LH +F   +   +         K  +Q+ + ++  A  +
Sbjct: 48  KKRGLMPGLTFSNELISRDEGLHWDFACLMFKHLA-------HKPSEQRVKEIITTAVRI 100

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYM 296
           E  +  E +P   +G++    +QY+
Sbjct: 101 EQEFLTEALPVKLIGMSCTLMKQYI 125


>gi|297529069|ref|YP_003670344.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
 gi|297252321|gb|ADI25767.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
          Length = 315

 Score = 74.4 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 91/272 (33%), Gaps = 26/272 (9%)

Query: 38  KYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           ++   ++ Y  A  N  W P ++    D   +     LT +E++     +  F++ E  V
Sbjct: 30  EHP-MYKLYEKAKRNGKWNPADIDFSQDKEDF---ARLTSEEKIAALPLVAGFSAGEEAV 85

Query: 97  ANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
             +   +          E   +L     +EA H   F      +G+   +L        S
Sbjct: 86  TLDILPMTNALARQGRLEDVMFLTTFMHDEAKHVEMFSRWQQEVGIGAMDL--------S 137

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-QILSLGR 213
           +    ++   + + L        T D+ +  ++   V+ ++ EG    +G+        +
Sbjct: 138 VFHNDHYKRIFYEALPEAMNRLYTDDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKK 197

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----------TKEFQQKSRT 263
           A    G+ +   Y+  DE  H+ FG+  I ++  EN   +                    
Sbjct: 198 AGLFPGLLQGIDYLNMDEGRHIQFGLYTIQRLVNENERYYDLFIQYMDELWPHVVGYVAY 257

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
           +       +       +   +  LN    +Q+
Sbjct: 258 LTELGKRQQQLARTYALEIDYDMLNNYVVKQF 289


>gi|74419022|gb|ABA03237.1| ribonucleoside diphosphate reductase small subunit [Enterobacteria
           phage LZ7]
          Length = 244

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 69/185 (37%), Gaps = 9/185 (4%)

Query: 7   LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
           +S +      VN+  + M            +   ++    E    + +  W P EV +  
Sbjct: 1   MSTVFN-TSPVNILTEPMFFGSGLGLARYDIQ--RHRVFEELIEKSLSFFWRPEEVNLMM 57

Query: 64  DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           D A +   N L   ++ +   NL + +  +S+        +   +S+P    ++    F 
Sbjct: 58  DAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +HS ++ +I+ +L  D  ++F+      +I  +A    +Y   +   +        + 
Sbjct: 115 ETIHSRSYTHIMRNLYADPSKVFDEIVLDKAIMKRAESIGRYYDDVLDKTRIWENAKENF 174

Query: 184 EFLQD 188
            +  +
Sbjct: 175 SYFAE 179


>gi|227878195|ref|ZP_03996169.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           crispatus JV-V01]
 gi|256844086|ref|ZP_05549573.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256850509|ref|ZP_05555936.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           crispatus MV-1A-US]
 gi|312976830|ref|ZP_07788579.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus CTV-05]
 gi|227862226|gb|EEJ69771.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           crispatus JV-V01]
 gi|256613991|gb|EEU19193.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|256712714|gb|EEU27708.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           crispatus MV-1A-US]
 gi|310896158|gb|EFQ45223.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus CTV-05]
          Length = 311

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 90/296 (30%), Gaps = 29/296 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +       AW       +  W P  VP+++D   +     L    +  +    G  
Sbjct: 10  NWNDMEDRVDKSAWS---RLNDIIWEPRNVPVREDKKEF---LQLDKPVQDALLHAFGAL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
           + S  L   N +  I      PE    L    + E++ +  + Y+I  L       ++ N
Sbjct: 64  SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNIAKDVIN 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  K     +  Q   +                      V+ E   +++ F  
Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKKV---------------ANVILETALYHSAFYA 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L L    KMV  AE  +  +R  S    +          +       E ++    +   
Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDV 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
               E  +  E M KG   +       Y+ +  N+    +G    +  T    NP 
Sbjct: 229 LIDNEKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281


>gi|332976575|gb|EGK13416.1| ribonucleotide-diphosphate reductase subunit beta [Desmospora sp.
           8437]
          Length = 295

 Score = 74.1 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 96/263 (36%), Gaps = 20/263 (7%)

Query: 34  LLPLKYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           +LP++       Y  A     W P ++    D   W + N +     L +          
Sbjct: 15  MLPMR------LYHKAKKLGTWDPKDIDFSQDRKDWATFNEIEKGMSLRLNSVFLG-GEE 67

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
                   ++ +  +    E   YL    +EEA H   F+ ++  LG+            
Sbjct: 68  AVTKDLLPLIQVIANEGRLEEEMYLTTFLWEEAKHVEVFRRMVDELGIT---------GD 118

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-QILSL 211
            SI    N+   + + L           + +   +    + ++ EGM   TG+    +S 
Sbjct: 119 LSIYHSDNYKKIFYEYLPEAMERLTRDPSPEAQAEASVTYNMIVEGMLAETGYHSTFMSY 178

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
            R   M G  + ++Y+ RDES H+ +G+ +++++  E+ H+W    ++    M   A  L
Sbjct: 179 KRLGIMPGTVQAFEYLKRDESRHICYGVYLLSRLIAEHDHIWDVVNKRMELLMAP-AIGL 237

Query: 272 EIAYAHETMPKGFVGLNAPSCEQ 294
                 E     F GL+     Q
Sbjct: 238 VNDLIAEVEELPF-GLDKNEMVQ 259


>gi|317122349|ref|YP_004102352.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885]
 gi|315592329|gb|ADU51625.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885]
          Length = 359

 Score = 73.7 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 20/226 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
            L P++       Y  A     W P  + ++ D   WK    L D ++  + R +  FA+
Sbjct: 35  DLPPMR------LYHKAKKFGTWDPRAIDLRQDKEDWK---LLNDAQKDALLRLVSLFAA 85

Query: 92  SESLVANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
            E  V  +   ++ +       E   +L    +EEA H+   +  +  +    GE  + Y
Sbjct: 86  GEESVTLDLLPLIMVIAREGRLEEEMFLTTFLWEEAKHTEFMRRFLDEVAGVSGEDLHHY 145

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FAQI 208
                     ++   + + L           +     +    + ++ EG+   TG +A  
Sbjct: 146 HT-------PSYKKIFYEELPQAMNRLLDDPSPAAQAEASVTYNLIVEGVLAETGYYAFY 198

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
            +L R   M G  +  +   RDES HL +G+ ++ ++   +  +W 
Sbjct: 199 RTLQRQGVMPGFVQGIRNFQRDESRHLAYGVFLLQRLVAADDSIWN 244


>gi|296169397|ref|ZP_06851020.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895947|gb|EFG75639.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 313

 Score = 73.7 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 85/245 (34%), Gaps = 14/245 (5%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYRHLSNP 111
           W P  +    D A W+    L+D ER+ + R    F + E  V       +A  R     
Sbjct: 32  WDPANIDFSRDSADWE---ALSDRERVYVTRLCAGFIAGEEAVTQDIQPFMAAMRAEGRL 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
               YL + AFEEA H+  F+  + ++G+ +            +     +   + + L  
Sbjct: 89  GDEMYLTQFAFEEAKHTQAFRLWLDAVGVRDD-------LHSFLDQTPAYRQLFDEELHE 141

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRD 230
              T     +    ++    +  + EGM   TG+     +      + G+ +  ++I  D
Sbjct: 142 SLNTLYVDPSPAAQVRASVTYNHIIEGMLALTGYYAWHKICVEHGILPGMQQLIRHIGDD 201

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           E  H+ +G     +    +   WT  F+ +   ++     L    +          L+  
Sbjct: 202 ERRHMAWGTFTCRRHVAADDTNWTV-FETRMNELIPLGQRLIDEGSALYGDDIPFNLSID 260

Query: 291 SCEQY 295
               Y
Sbjct: 261 EMRTY 265


>gi|221309910|ref|ZP_03591757.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221314233|ref|ZP_03596038.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221319156|ref|ZP_03600450.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221323429|ref|ZP_03604723.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. SMY]
          Length = 195

 Score = 73.3 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 15/186 (8%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   +    +  KA  
Sbjct: 78  AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKKART 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   +T+         K  D+  L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVSVYKTI---------KKNDEISLFKGMVASVFLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYI 227
           E    I
Sbjct: 189 EIINLI 194


>gi|219847941|ref|YP_002462374.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus
           aggregans DSM 9485]
 gi|219542200|gb|ACL23938.1| ribonucleotide reductase [Chloroflexus aggregans DSM 9485]
          Length = 297

 Score = 73.3 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 109/270 (40%), Gaps = 19/270 (7%)

Query: 45  KYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN--IV 101
            +  A     W P+ +    D+  W   N L+D+ER ++ R    F + E  V  +   +
Sbjct: 22  LFEKAKQFGIWNPSLLDFSRDIDDW---NRLSDEERDLLLRLTALFQAGEEAVTLDLLPL 78

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
           +    H    E   +L    FEEA H+  F   I+ +   + +L        S     ++
Sbjct: 79  IKAIAHDGRLEEELFLTTFLFEEAKHTDFFARFISEVARVDPDL--------SRYHTPSY 130

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGI 220
                  L           +     +    + ++ EG+   TG+    + L   N M G+
Sbjct: 131 RALIYDALPRAMQRLEHDPSPFNLAEASLTYNMIVEGVLAETGYHGYFTILDTHNLMPGV 190

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE-ATLLEIAYAHET 279
            E  + + +DES H+ +GI +++++   +  +W    ++ +  ++H    + EI  +++T
Sbjct: 191 REGIRLLKQDESRHIAYGIYLLSRLIAADRQIWDHIVERMNELVIHALGVIDEIFTSYDT 250

Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
           MP    GL   +   +      RR +++ L
Sbjct: 251 MP---FGLQIETFSTFALNQFQRRLNRLEL 277


>gi|90018206|gb|ABD83916.1| ribonucleotide reductase M2 polypeptide [Ictalurus punctatus]
          Length = 139

 Score = 73.3 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 20/150 (13%)

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
           LFN    +P +  KA+WAL +              + D +F + +  F  V EG++F   
Sbjct: 10  LFNAVETLPCVKKKADWALNWI------------GNKDAQFGERVVAFAAV-EGIFFSGS 56

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           FA I  L +   M G+    + I RDE LH +F   +   +         K  +   +++
Sbjct: 57  FASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVN-------KPSEATVKSI 109

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
           +  A  +E  +  + +P   +G+N    +Q
Sbjct: 110 IVNAVQIEQEFLTQALPVKLIGMNCDLMKQ 139


>gi|227889328|ref|ZP_04007133.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           johnsonii ATCC 33200]
 gi|227850130|gb|EEJ60216.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           johnsonii ATCC 33200]
          Length = 313

 Score = 72.9 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 88/275 (32%), Gaps = 22/275 (8%)

Query: 66  ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
              K    L  +E+ +I  + G    S +L     +  I +   N E         + E+
Sbjct: 41  KDQKEFLHLPRNEQTVILHSFGSLTLSSTLQMKVALSEIKKDAENSEEVAVYNALQYLES 100

Query: 126 VHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           +++  + Y++        + + +    + P +  K        Q+ ++            
Sbjct: 101 INNKAYSYVLAEFSDSKKQEDAYEWANQNPYLQKKMKLLNTVYQSGNAIQKK-------- 152

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
                      +  G++  + F  +   G+  K+   AE  +Y +R  +L+  +      
Sbjct: 153 ------AAHVFLSTGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITTLNGIYTGIKFR 205

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           +   +       +       +       E+++         +       E Y+ +  N+ 
Sbjct: 206 RDFFKLSKKEQNKVHDWVYDLCDNLYDNELSHIKLLYQNTDL---ENKVEHYIHYTLNKA 262

Query: 304 CHQIGLEPLFKYTENPFPWM--SEVIDLKKEKNFF 336
              +G EP +         +  + +++    ++FF
Sbjct: 263 LMNLGQEPKYPENVETLDPILTTGLMESAMIEDFF 297


>gi|156743708|ref|YP_001433837.1| ribonucleotide-diphosphate reductase subunit beta [Roseiflexus
           castenholzii DSM 13941]
 gi|156235036|gb|ABU59819.1| ribonucleotide reductase [Roseiflexus castenholzii DSM 13941]
          Length = 295

 Score = 72.9 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 108/257 (42%), Gaps = 16/257 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN--IVLAIYRHLSNP 111
           W P+++    D+  W++   LTDDER ++ R    F + E  V  +   ++A        
Sbjct: 33  WNPSDIDFSQDMRDWQT---LTDDERDLVLRLTSLFQAGEEAVTLDLLPLVATIAAEGRI 89

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           E   +L    +EEA H+  F   +T +    G+L + +         AN+     + L +
Sbjct: 90  EEELFLTSFLWEEAKHTDFFNRFLTEVAGVTGDLSHYHT--------ANYRALIHEALPA 141

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIMRD 230
                    + +        + ++ EG+   TG+ A    L R N M G  +    + +D
Sbjct: 142 AMERLRDDPSPEAQAIASLTYNMIVEGVLAETGYHAYFTMLERRNLMPGTRKGIGLLKQD 201

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           ES H+ +G+ +++++    P LW    ++ +  +++   +++ A+A         GL+  
Sbjct: 202 ESRHIAYGVYLLSRLINAEPRLWDVVVERMNELVVYAMGVIDDAFACY--EVVPFGLSHD 259

Query: 291 SCEQYMQFIANRRCHQI 307
              Q+      RR  +I
Sbjct: 260 DFMQFAMGQFERRLDRI 276


>gi|328553048|gb|AEB23540.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           amyloliquefaciens TA208]
          Length = 195

 Score = 72.9 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 15/186 (8%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   +    +  KA  
Sbjct: 78  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEKINEVFEWVKNNRFLQKKART 137

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            +   + +         +  D   L    V  V  E   FY+GF   L      K++   
Sbjct: 138 IVLIYKAV---------QKNDDISLFKAMVASVFLESFLFYSGFYYPLYFYGQGKLMQSG 188

Query: 222 EQYQYI 227
           E    I
Sbjct: 189 EIINLI 194


>gi|148656105|ref|YP_001276310.1| ribonucleotide-diphosphate reductase subunit beta [Roseiflexus sp.
           RS-1]
 gi|148568215|gb|ABQ90360.1| ribonucleotide reductase [Roseiflexus sp. RS-1]
          Length = 297

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 106/257 (41%), Gaps = 16/257 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN--IVLAIYRHLSNP 111
           W P+++    D+  W++   LT DER ++ R    F + E  V  +   ++A        
Sbjct: 32  WNPSDIDFSQDVRDWQT---LTADERDLVLRLTSLFQAGEEAVTLDLLPLVATIAAEGRI 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           E   +L    +EEA H+  F   +T +    G+L + +         +N+     + L +
Sbjct: 89  EEELFLTSFLWEEAKHTDFFNRFLTEVTGVTGDLSHYHT--------SNYRALIHEALPA 140

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIMRD 230
                    + +        + ++ EG+   TG+ A    L R + M G  +    + +D
Sbjct: 141 AMGRLRDDPSPEAQAIASLTYNMIVEGVLAETGYHAYFTMLERRDLMPGTRKGIGLLKQD 200

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
           ES H+ +G+ +++++    P LW    ++ +  +++   +++ A+A         GL+  
Sbjct: 201 ESRHIAYGVYLLSRLINAEPRLWDVIVERMNELVVYAMGVIDDAFACY--EVVPFGLSHD 258

Query: 291 SCEQYMQFIANRRCHQI 307
               +      RR  +I
Sbjct: 259 DFMHFAMGQFQRRLDRI 275


>gi|325003309|ref|ZP_08124421.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia
           sp. P1]
          Length = 326

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 88/276 (31%), Gaps = 19/276 (6%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P++       +      HW P+ +    D   +     +TDDER         F + E 
Sbjct: 29  FPMR------LFSKGNGKHWDPSAIDFTQDAEDF---AAMTDDERWQTCALAAQFMAGEE 79

Query: 95  LVAN--NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V       +A            YL +  +EEA H+  F+    ++G+            
Sbjct: 80  SVTQDLQPFVAAMAAEGRLGDEMYLTQFVYEEAKHTQAFRLWFDAVGM-------TGDLH 132

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             I    ++   +T+ L    +      +    L+    +  V EG    TG+     + 
Sbjct: 133 SYIEHNEHYLEIFTRALPESLYALADDPSPANQLRASVTYNHVVEGTLALTGYFTWHKIC 192

Query: 213 -RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                + G+ +  ++I  DE  H+ +G     +    +  LW     +    M+    ++
Sbjct: 193 AERGILPGMQKVIKHIGDDERRHMAWGTFTCRRHVAADDALWDVVDGRMQELMVPAMGVV 252

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
                     +   G++     +Y      RR   I
Sbjct: 253 TGTVDRWPDGQAPFGIDLNELAEYAMDKVGRRLGAI 288


>gi|313902757|ref|ZP_07836155.1| ribonucleotide reductase [Thermaerobacter subterraneus DSM 13965]
 gi|313467054|gb|EFR62570.1| ribonucleotide reductase [Thermaerobacter subterraneus DSM 13965]
          Length = 349

 Score = 72.1 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 84/226 (37%), Gaps = 20/226 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
            L P++       Y  A     W P  + +  D   W   N L D ++  + R +  FA+
Sbjct: 41  DLPPMR------LYHKAKKFGTWDPRAIDLSQDREDW---NLLNDAQKDALLRLVSLFAA 91

Query: 92  SESLVANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
            E  V  +   ++ +       E   +L    +EEA H+   +  +  +    G   + Y
Sbjct: 92  GEESVTLDLLPLIMVIAREGRLEEEMFLTTFLWEEAKHTEFMRRFLDEVAGVSGADLHHY 151

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FAQI 208
                     ++   + + L           +     +    + ++ EG+   TG +A  
Sbjct: 152 HT-------PSYRKIFYEELPRAMNRLLEDPSPAAQAEASVTYNLIVEGVLAETGYYAFY 204

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
            +L R   M G  +  +   RDES HL +G+ ++ ++   +  +W 
Sbjct: 205 RTLQRQGVMPGFIQGIRNFQRDESRHLAYGVFLLQRLVAADDAIWQ 250


>gi|293380498|ref|ZP_06626562.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 214-1]
 gi|290922932|gb|EFD99870.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           crispatus 214-1]
          Length = 311

 Score = 72.1 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 89/296 (30%), Gaps = 29/296 (9%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N +       AW       +  W P  VP+++D   +     L    +  +    G  
Sbjct: 10  NWNDMEDRVDKSAWS---RLNDIIWEPRNVPVREDKKEF---LQLDKPVQDALLHAFGAL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
           + S  L   N +  I      PE    L    + E++ +  + Y+I  L       ++ N
Sbjct: 64  SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNIAKDVIN 123

Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
              + P +  K     +  Q   +                      V+ E   +++ F  
Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKKV---------------ANVILETALYHSAFYA 168

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
            L L    KMV  AE  +  +R  S    +          +       E ++    +   
Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDV 228

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
                  +  E M KG   +       Y+ +  N+    +G    +  T    NP 
Sbjct: 229 LIDNAKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281


>gi|331699199|ref|YP_004335438.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953888|gb|AEA27585.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia
           dioxanivorans CB1190]
          Length = 324

 Score = 72.1 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 95/277 (34%), Gaps = 20/277 (7%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            P++       +      HW P ++    D         +TDDER         F + E 
Sbjct: 26  FPMR------LFAKGNARHWNPADIDFSQDARD---IAAMTDDERWWTFALAAQFMAGEE 76

Query: 95  LVAN--NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V       +A            YL +  FEEA H+  F+    ++G+ E          
Sbjct: 77  SVTQDLQPFVAAMAAEGRLADEMYLTQFVFEEAKHTDAFRRWFDAVGMTED-------LH 129

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
           P I    ++   +TQ L +  +      + +  ++    +  + EG    TG+     + 
Sbjct: 130 PFIEFNEHYMQIFTQELPASLYALAADPSPRNQVRASVTYNHIVEGTLALTGYFTWAKIC 189

Query: 213 -RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                + G+ +  ++I  DE  H+ +G     +    +  ++    ++    M+    ++
Sbjct: 190 TSRGILPGMQQVIKHIGDDERRHMAWGTFTCRRHVAADDAMFDVVDERMQELMVPSMGVV 249

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
              +       G V  +     +  ++  ++   ++G
Sbjct: 250 TGTFEKVEADGGQVPFDV-DMNELAEYAMDKLGRRLG 285


>gi|323167150|gb|EFZ52868.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
           sonnei 53G]
          Length = 177

 Score = 71.7 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 8/140 (5%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W       +N W+P +VP+ +D+  W++   LT  E+ +  R     
Sbjct: 10  NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              ++L       ++      P     L   +F EAVH+ ++  I ++L   +     + 
Sbjct: 64  TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123

Query: 148 MYREVPSITAKANWALQYTQ 167
              E   +  KA    Q+ +
Sbjct: 124 WSEENAPLQRKAQIIQQHYR 143


>gi|320450740|ref|YP_004202836.1| ribonucleoside-diphosphate reductase subunit beta [Thermus
           scotoductus SA-01]
 gi|320150909|gb|ADW22287.1| ribonucleoside-diphosphate reductase, subunit beta [Thermus
           scotoductus SA-01]
          Length = 299

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 87/272 (31%), Gaps = 31/272 (11%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
            PLK       Y  A    W P  + +++D    K+   L+ +++         F + E 
Sbjct: 17  FPLK------LYHKAKRYFWDPQTIDLEEDQ---KTFQKLSPEQKEASLHLASLFVAGEE 67

Query: 95  LVANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
            V  +   ++ +       E   +L     +EA H   F  ++ +               
Sbjct: 68  AVTLDLLPLVQVIAREGRLEEEMFLTTFLVDEAKHVEFFSLLLQAT---------AGEAN 118

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
                 +N+   + + L           + +  ++    + ++ EG+   TG+       
Sbjct: 119 LERFHGSNYRKIFYEELPQAMGRLLNDPSPEAQVEAAVTYNMIVEGVLAETGYYAYYRSA 178

Query: 213 RANKMVGIA-----EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
                 G A     E  ++I RDES H+ +GI +I +    NP     E        +  
Sbjct: 179 ELLNAQGFALPGTLEGIRHIQRDESRHIAYGIYLIARHVAANP-----ELFPVVERRMST 233

Query: 268 ATLLEIAYAHETMPKGFVGLNAP-SCEQYMQF 298
                +    +       G        +++Q+
Sbjct: 234 LLPYALGVVQDIFQAYPEGFPLKLDMNEFIQY 265


>gi|213609160|ref|ZP_03368986.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 144

 Score = 71.0 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 225 QYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETM 280
           + I RDE+LHL     ++N  +  +++P +    +E +Q+   +  +A   E  +A    
Sbjct: 1   RLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLF 60

Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
             G  +GLN     QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 61  RDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 108


>gi|157135887|ref|XP_001663605.1| hypothetical protein AaeL_AAEL013412 [Aedes aegypti]
 gi|108870103|gb|EAT34328.1| conserved hypothetical protein [Aedes aegypti]
          Length = 244

 Score = 71.0 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 58  EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
           EV +  DLA W+    L   E+  I   L FF +S+  +  N+V    + L   E R + 
Sbjct: 142 EVDLSKDLADWE---KLKSGEKHFISHVLAFFVASDGSMNENLVERFSQELQVTEARCFY 198

Query: 118 LRQAFEEAVHSHTFQYIITSLGL---DEGELFNMYREVPSITAKAN 160
             Q   E VHS  +  +I +          LFN    +P +  KA 
Sbjct: 199 GFQIAMENVHSEMYSLLIDTYIRDSKQREYLFNAIDNLPCVKKKAE 244


>gi|163848862|ref|YP_001636906.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526817|ref|YP_002571288.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus sp.
           Y-400-fl]
 gi|163670151|gb|ABY36517.1| ribonucleotide reductase [Chloroflexus aurantiacus J-10-fl]
 gi|222450696|gb|ACM54962.1| ribonucleotide reductase [Chloroflexus sp. Y-400-fl]
          Length = 297

 Score = 70.2 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 103/260 (39%), Gaps = 18/260 (6%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN--IVLAIYRHLSNP 111
           W P+ + +  D+  W+    L D+ER ++ R    F + E  V  +   ++         
Sbjct: 32  WNPSLIDLSRDIRDWEQ---LRDEERDLLLRLTALFQAGEEAVTLDLLPLIRTIAREGRL 88

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
           E   YL    FEEA H+  F   I+ +   + +L        S    A++     + L +
Sbjct: 89  EEELYLTTFLFEEAKHTDFFARFISEVARVDPDL--------SRYHTASYRALIYEALPA 140

Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIMRD 230
                    +     +    + ++ EG+   TG+ A    L   + M G  E  + + +D
Sbjct: 141 ALHRLDHDPSPLNLAEASLTYNMIVEGVLAETGYHAYFTILDSQDIMPGTREGIRLLKQD 200

Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQ-KSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
           ES H+ +G+ +++++   +P +W    ++     +     + EI   ++ MP     L  
Sbjct: 201 ESRHIAYGVYLLSRLIATDPQVWDHIVERMNELVLYAMGVIDEIFACYDPMP---FNLQI 257

Query: 290 PSCEQYMQFIANRRCHQIGL 309
            +   +      RR +++ L
Sbjct: 258 ETFSTFALNQFQRRLNRLEL 277


>gi|56421306|ref|YP_148624.1| ribonucleotide-diphosphate reductase subunit beta [Geobacillus
           kaustophilus HTA426]
 gi|10800082|dbj|BAB16601.1| unnamed protein product [Geobacillus thermoleovorans]
 gi|56381148|dbj|BAD77056.1| ribonuleotide reductase small subunit [Geobacillus kaustophilus
           HTA426]
          Length = 302

 Score = 70.2 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 100/283 (35%), Gaps = 29/283 (10%)

Query: 38  KYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           ++   ++ Y  A  N  W P ++    D   + S    ++++   +    GF A  E++ 
Sbjct: 17  EHP-MFKLYEKAKRNGKWNPADIDFSQDQKDFASLT--SEEKISALPLVAGFSAGEEAVT 73

Query: 97  ANNIVLAIY-RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
            + + +A         E   +L     +EA H   F     ++G+ + +L        S+
Sbjct: 74  LDILPMAHALARQGRLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDL--------SV 125

Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-QILSLGRA 214
               ++   + + L          D+ +  ++   V+ ++ EG    +G+        +A
Sbjct: 126 FHNDHYKRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKKA 185

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
               G+ +   Y+  DE  H+ FGI  I +I  E+   +     +     + E     I 
Sbjct: 186 GLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERYY-----ELFIRYMDELWPHVIG 240

Query: 275 YAHETMPKGF----------VGLNAPSCEQYMQFIANRRCHQI 307
           Y       G           + ++      Y+    N R  QI
Sbjct: 241 YVDYLTELGKRQQQLARTYALEIDYDLLRHYVIKQFNLRKKQI 283


>gi|227894062|ref|ZP_04011867.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           ultunensis DSM 16047]
 gi|227864144|gb|EEJ71565.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           ultunensis DSM 16047]
          Length = 269

 Score = 69.8 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 91/286 (31%), Gaps = 26/286 (9%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
              + N +       AW       +  W P  VP+++D   +     L   ++  + R  
Sbjct: 7   EAINWNDMEDRVDRSAWA---RLNDIIWEPRHVPVKEDQKEF---LKLDKPKQTAVLRAF 60

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
           G  A +  L     +  I +    PE    L    + E++ +  + Y+I  LG+D+   E
Sbjct: 61  GSLALASGLQMRIGLDQIKQDAITPEESAVLNALQYLESIANKGYSYVIHELGIDDDVQE 120

Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
            F+       +  K +   +  Q+  +                      VV E   ++  
Sbjct: 121 TFDWANNNYYLQRKIHILNKIYQSGDALQKKAAD---------------VVLETALYHAD 165

Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
           F   L L    KMV  AE  +  +R  S    +          +       + ++    +
Sbjct: 166 FYAPLLLFGEGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGFQKLGKEEKSKLKKWIDNL 225

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
             +   +E  +          G      + Y+ +  N+    +GL 
Sbjct: 226 FSKLVTIEEKHIEAMYKD--TGW-IDDAKHYLYYSTNKAYLNLGLP 268


>gi|121730673|ref|ZP_01682814.1| ATP-dependent Zn proteases [Vibrio cholerae V52]
 gi|121627739|gb|EAX60372.1| ATP-dependent Zn proteases [Vibrio cholerae V52]
          Length = 129

 Score = 69.8 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           +E +Q+S  +  EA   E  +A      G  +GLN     QY+++I N R   +GLEP +
Sbjct: 19  EECKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAY 78

Query: 314 K-YTENPFPWMSEVIDLKK 331
              T NP PW++  +    
Sbjct: 79  PAATNNPIPWINAWLSSDN 97


>gi|122892861|gb|ABM67449.1| NrdB [Xanthomonas campestris]
 gi|122892863|gb|ABM67450.1| NrdB [Xanthomonas campestris]
 gi|122892865|gb|ABM67451.1| NrdB [Xanthomonas campestris]
 gi|122892867|gb|ABM67452.1| NrdB [Xanthomonas campestris]
 gi|122892869|gb|ABM67453.1| NrdB [Xanthomonas campestris]
 gi|122892871|gb|ABM67454.1| NrdB [Xanthomonas campestris]
 gi|122892873|gb|ABM67455.1| NrdB [Xanthomonas campestris]
 gi|122892875|gb|ABM67456.1| NrdB [Xanthomonas campestris]
 gi|122892877|gb|ABM67457.1| NrdB [Xanthomonas campestris]
 gi|122892879|gb|ABM67458.1| NrdB [Xanthomonas campestris]
 gi|122892881|gb|ABM67459.1| NrdB [Xanthomonas campestris]
 gi|122892883|gb|ABM67460.1| NrdB [Xanthomonas campestris]
 gi|122892885|gb|ABM67461.1| NrdB [Xanthomonas campestris]
 gi|122892887|gb|ABM67462.1| NrdB [Xanthomonas campestris]
 gi|122892889|gb|ABM67463.1| NrdB [Xanthomonas campestris]
 gi|122892891|gb|ABM67464.1| NrdB [Xanthomonas campestris]
 gi|122892893|gb|ABM67465.1| NrdB [Xanthomonas campestris]
 gi|122892895|gb|ABM67466.1| NrdB [Xanthomonas campestris]
 gi|122892897|gb|ABM67467.1| NrdB [Xanthomonas campestris]
 gi|122892899|gb|ABM67468.1| NrdB [Xanthomonas campestris]
 gi|122892901|gb|ABM67469.1| NrdB [Xanthomonas campestris]
 gi|122892903|gb|ABM67470.1| NrdB [Xanthomonas campestris]
 gi|122892905|gb|ABM67471.1| NrdB [Xanthomonas campestris]
 gi|122892907|gb|ABM67472.1| NrdB [Xanthomonas campestris]
 gi|122892909|gb|ABM67473.1| NrdB [Xanthomonas campestris]
 gi|122892911|gb|ABM67474.1| NrdB [Xanthomonas campestris]
 gi|122892913|gb|ABM67475.1| NrdB [Xanthomonas campestris]
 gi|122892915|gb|ABM67476.1| NrdB [Xanthomonas campestris]
 gi|122892917|gb|ABM67477.1| NrdB [Xanthomonas campestris]
 gi|122892919|gb|ABM67478.1| NrdB [Xanthomonas campestris]
 gi|122892921|gb|ABM67479.1| NrdB [Xanthomonas campestris]
 gi|122892923|gb|ABM67480.1| NrdB [Xanthomonas campestris]
 gi|122892925|gb|ABM67481.1| NrdB [Xanthomonas campestris]
 gi|122892927|gb|ABM67482.1| NrdB [Xanthomonas campestris]
 gi|122892929|gb|ABM67483.1| NrdB [Xanthomonas campestris]
 gi|122892931|gb|ABM67484.1| NrdB [Xanthomonas campestris]
 gi|122892933|gb|ABM67485.1| NrdB [Xanthomonas campestris]
 gi|122892935|gb|ABM67486.1| NrdB [Xanthomonas campestris]
 gi|122892937|gb|ABM67487.1| NrdB [Xanthomonas campestris]
          Length = 175

 Score = 69.4 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 14/185 (7%)

Query: 56  PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
           P EV M+ D   +     L+  E+      +G  A+ +S     I   +  ++++P    
Sbjct: 1   PDEVDMKGDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHA 56

Query: 116 YLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
                  +E +H+ ++ Y++ S+    D+  +F + R  P+I  +    +          
Sbjct: 57  NAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYDDF---- 112

Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
                +D   E L    +   + EG+ FY+GFA   +L R N+M G  +   +I RDE  
Sbjct: 113 ----MRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELA 168

Query: 234 HLNFG 238
           H  F 
Sbjct: 169 HSKFI 173


>gi|293556438|ref|ZP_06675016.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
 gi|291601402|gb|EFF31676.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E1039]
          Length = 317

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 102/292 (34%), Gaps = 25/292 (8%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A +  W+ T +P+++D   W+    L+  ER  + R L F A+  +  +   V  I 
Sbjct: 25  WERATSLFWLDTRIPIEEDREKWE---KLSLQERKQLNRLLLFLANLSTYQSIESVEVIR 81

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
               + +    L    F E V++  +  I+     +    E F+     P +        
Sbjct: 82  NSERSQQEIAILNNLQFTEMVNTKAYNRILRVFNKEIDLQEEFDWIDTEPLVREYLEKID 141

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              Q         GT    + F+       V  EG+  Y   + +  L      V +   
Sbjct: 142 TIYQ---------GTNPMKKRFM------VVCVEGLLNYAYLSYLFELWIEKGFVNLGSM 186

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP-K 282
              I+R+ESLH  +    I  +  E      KEF+     ++     L I   ++    +
Sbjct: 187 LGMIVRNESLHCYYLNHKIRLLLRETKLEQVKEFKNWGVYIVDYFVELAIRLINDFYNLE 246

Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
               +     +Q     AN     IGL   ++  E     ++  ++  ++ +
Sbjct: 247 NSKTVAINLVKQ----EANHILTGIGLNKAYQIDEKKLVTINRYLNELRKHD 294


>gi|282852893|ref|ZP_06262234.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 224-1]
 gi|282556001|gb|EFB61622.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           gasseri 224-1]
          Length = 277

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 77/244 (31%), Gaps = 21/244 (8%)

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-- 138
           M+  + G  A S +L     +  I +   N E         + E++++  + + +T    
Sbjct: 1   MLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAAVYNALQYLESINNKAYGHALTEFST 60

Query: 139 -GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
                 E FN   + P +  K        Q+             D    +     ++   
Sbjct: 61  SNEQRDEAFNWANQNPYLQKKMRLLNTVYQS-------------DNAIQKKAAHVFIS-T 106

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++  + F  +   G+  K+   AE  +Y +R  +L+  +      +          K  
Sbjct: 107 GLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITTLNGIYTGIKFRRDFFNLSKEEQKNI 165

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
            +    +       E+ + H        GL     E Y+ +  N+    +G EP +    
Sbjct: 166 HKWVYDLCDRLYANELNHIHLLYED--TGL-EDKVEHYIHYTLNKALMNLGQEPKYPENV 222

Query: 318 NPFP 321
               
Sbjct: 223 ETLD 226


>gi|213864815|ref|ZP_03386934.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
          Length = 170

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 5/161 (3%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
           +++       ++      P     L   +F EAVH+ ++  I ++L   +     +    
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           E P +  KA   L +  +         +   +       F 
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKIASVFLESFLFYSGFW 167


>gi|229544146|ref|ZP_04433205.1| ribonucleotide reductase [Bacillus coagulans 36D1]
 gi|229325285|gb|EEN90961.1| ribonucleotide reductase [Bacillus coagulans 36D1]
          Length = 301

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 97/279 (34%), Gaps = 28/279 (10%)

Query: 27  ARSDVNQLLPLKYGWAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
            + + N   P+     ++ Y  A  N  W P ++    D   +     L ++ER+     
Sbjct: 11  GQINWND--PM-----YKLYEKAKRNGGWNPADIDFSQDREDF---LQLREEERIASLPL 60

Query: 86  LGFFASSESLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
           +  F++ E  V      +L         E   +L     +EA H+  F     ++G+ + 
Sbjct: 61  ISSFSAGEEAVTLDILPMLHAMARQGRLEDTMFLTTFLHDEAKHTEMFSRWQQAVGVGDL 120

Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
           +L        S     ++   + + L        T D+ +  ++   V+ ++ EG+   +
Sbjct: 121 DL--------SAYHNDSYKRIFYEALPEAMERLYTDDSPEAVIRAATVYNMIVEGVLAES 172

Query: 204 GFA-QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
           G+        +A    GI +   Y+  DE  H+ FGI  I ++ + N   +         
Sbjct: 173 GYYSFRQIYKKAGLFPGILQGIDYLNMDEGRHIQFGIYTIQRLVVGNEERFKLFHDYMDE 232

Query: 263 TMLHEATLLEIAYAHETMPKGFVG------LNAPSCEQY 295
             +H   ++E       + +                 QY
Sbjct: 233 LWMHAYGVVEYLVGLAVLQREQSNFESQIVFEPDIMRQY 271


>gi|308183792|ref|YP_003927924.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308047718|gb|ADO00261.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 308

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 75/271 (27%), Gaps = 26/271 (9%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            +     N W+   +P+ +D   W+    L+D ++  I R L   +      +     AI
Sbjct: 22  MWERLTTNFWLDIRIPITNDQTAWQQ---LSDTQQQAITRMLAGTSMLAVYQSEVGAPAI 78

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
                  +    L    F ++VH+ +   I  +L    G                 WA  
Sbjct: 79  RHDRRTQQEESVLNTITFMKSVHAKSCTTIFRALIPGNG------------GESFTWADD 126

Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
                +          +D    +                 F +  ++ +   +V   +  
Sbjct: 127 NANLQAEIDQLAQMSTSDMALQKKALFIL-----TETGLSFGKYWTILQTQALVNTYQML 181

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
             I+R  +L   +          E       E Q    T   +    E  +    +    
Sbjct: 182 ANILRGSALFSAYIGYKFRLRFEELTVSDQTELQYWINTQFDQLMQTEKDFLEANLDDAT 241

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
             +N  S      + AN     +G   +++ 
Sbjct: 242 EAINLAS------YGANHALMSLGFNAVYEV 266


>gi|148688624|gb|EDL20571.1| mCG140327 [Mus musculus]
          Length = 65

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
           +F+A+    ++G   +F+  ENPF +M E I L+ + NFFE RV EYQ+   + 
Sbjct: 1   EFVADMLMLELGFNKIFRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 52


>gi|284046663|ref|YP_003397003.1| ribonucleotide reductase [Conexibacter woesei DSM 14684]
 gi|283950884|gb|ADB53628.1| ribonucleotide reductase [Conexibacter woesei DSM 14684]
          Length = 306

 Score = 67.5 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 92/276 (33%), Gaps = 14/276 (5%)

Query: 39  YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           YG  +  +      HW   ++    D   W  +    +    M      FF   + + A 
Sbjct: 36  YGELYSLWERQ---HWAVQDLDFTQDKLDWHERFDEEERFARMYG-LSAFFIGEQRVAAE 91

Query: 99  NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
              L       +   R +L  Q  +EA H   F    + + +   E         S    
Sbjct: 92  LGPLMRAAPQED--MRLFLCTQIADEARHVAFFDRFYSEVDVLGVEGLEEKLAATSEHLN 149

Query: 159 ANWALQYTQTLSSPSFTTGTKDAD-QEFLQDLFVFYVVFEGMWFYTG-FAQILSLGRANK 216
             + + + + L S      T+  D +  ++ + ++++V EGM   TG    I    R   
Sbjct: 150 PEFGVLFDEMLKSRVDRLATEPEDLETLVEAITIYHMVIEGMLALTGQHFIIDYNEREGT 209

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ--KSRTMLHEATLLEIA 274
           + G  E +  + RDE  H+ FG   +  +   +P       +   +   +       + A
Sbjct: 210 LPGFVEGFINVARDEHRHVAFGARFLRDMARSDPRHVAAIQRTLGEIAPVAEGVLKPKWA 269

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIA-NRRCHQIGL 309
              +       G++      +  F A  RR   IGL
Sbjct: 270 PDDDDFE--IFGISVTETRAFA-FRALERRMKVIGL 302


>gi|289824705|ref|ZP_06544204.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 141

 Score = 67.5 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 4/110 (3%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAF 114


>gi|326383562|ref|ZP_08205248.1| ribonucleotide-diphosphate reductase subunit beta [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197646|gb|EGD54834.1| ribonucleotide-diphosphate reductase subunit beta [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 297

 Score = 67.5 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 89/279 (31%), Gaps = 21/279 (7%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
            Q  PL+       +       W P  +    D   W    GLTDD+R      +  F +
Sbjct: 3   WQSFPLR------LFTKGNAKTWDPASIDFSQDALDW---AGLTDDQRRSATYLVSQFVA 53

Query: 92  SESLVAN--NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
            E  V       +             YL +   +EA H+  F+  + ++GL E       
Sbjct: 54  GEEAVTEDIRPFMNAMSAEDRFGDEMYLAQFCLDEAKHAQGFRLWMDAVGLTED------ 107

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
              P +     +   + + L        T  +    ++    +  V EG    TG+    
Sbjct: 108 -LHPYVAENPFYRELFYEQLPQALRILNTDPSPVNQVRASVTYNHVIEGSLALTGYYAWR 166

Query: 210 SLG-RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
            +   +  + G+ +    I  DE+ H+ +G     +    +  LW     +    +    
Sbjct: 167 RICVESEILPGMQQLIGSIAEDETRHMAWGTFTCRRHVAADDSLWQVVTDRFGELVPLAM 226

Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
            +  I +      +   G++      Y    A RR H I
Sbjct: 227 GM--IKWVDGQFDEAPFGIDNDVFLTYAADRAQRRLHAI 263


>gi|213646444|ref|ZP_03376497.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
          Length = 141

 Score = 67.1 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++    F
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETGRF 114


>gi|312601198|gb|ADQ90453.1| Ribonucleoside-diphosphate reductase beta chain [Mycoplasma
           hyopneumoniae 168]
          Length = 223

 Score = 67.1 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 77/229 (33%), Gaps = 23/229 (10%)

Query: 123 EEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
              VH+ ++  I ++L   E   E  N       +  +A   + +               
Sbjct: 1   MVGVHARSYGSIFSTLCSSEEIEEAHNWVINNEKLQKRARILIPFYVGED---------- 50

Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
                     V   +  G   Y GF     L   +K+   ++  + I+RD+ +H  +   
Sbjct: 51  -----PLKSKVAAALMPGFLLYGGFYLPFYLSARSKLPNTSDIIRLILRDKVIHNYYSGY 105

Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
              +   +       E ++ +  +L++   LE  Y ++   +  VGL   + + +  + A
Sbjct: 106 KFQKKVEKLSPEKQDEIKKFTFDLLYKLIELEKDYLYDLYSE--VGLAESAIK-FSIYNA 162

Query: 301 NRRCHQIGLEPLFKYTENPF-PWMSEVID--LKKEKNFFETRVTEYQQG 346
            +    +G +  F   E    P +   +     +  +FF    + Y   
Sbjct: 163 GKFLQNLGYDSPFSKEETEIEPEIFSQLSARADENHDFFSGNGSSYVMA 211


>gi|256111772|ref|ZP_05452743.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 3 str. Ether]
 gi|265993237|ref|ZP_06105794.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 3 str. Ether]
 gi|262764107|gb|EEZ10139.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
           melitensis bv. 3 str. Ether]
          Length = 138

 Score = 67.1 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W++   L   E+ +  R     
Sbjct: 20  NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTTRVFTGL 73

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
              +++      + +      P     L   +F EAVH+ ++  I ++L L   ++ + Y
Sbjct: 74  TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTP-DVDDAY 132

Query: 150 REVPSI 155
           R     
Sbjct: 133 RWSEEN 138


>gi|327440682|dbj|BAK17047.1| ribonucleotide reductase, beta subunit [Solibacillus silvestris
           StLB046]
          Length = 294

 Score = 66.7 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 16/218 (7%)

Query: 43  WEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
           +  Y  A     W P ++    D   WK    L ++++L +      F   E  V  +I+
Sbjct: 18  YNLYQKAKKFGIWNPVDIDFTQDKEDWK---KLNEEQQLEVLTQFAQFIGGEEAVTQDIL 74

Query: 102 LAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
             I         E   YL    FEEA H+  F   +  +G+ +           +     
Sbjct: 75  PMIMAVSKKGWFEEESYLTTFLFEEAKHAEFFSLFLEEIGVKD---------DLTHLLTP 125

Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMV 218
            +   + +TL +         + +  +     + +  EG+   TG+     +L  AN   
Sbjct: 126 GYRKLFDETLPAVMGRLIEDQSPEAMIDAAVTYNIFAEGVLAETGYWFFHEALSSANLFP 185

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           G     + + RDE  H+ FG  +I ++  ENP L   E
Sbjct: 186 GFISGIRNVKRDEGRHIGFGTFLIQRLISENPELELFE 223


>gi|289606667|emb|CBI61081.1| unnamed protein product [Sordaria macrospora]
          Length = 59

 Score = 65.6 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
            Q  P +Y WA++ +      HWMP EVP+ +D   W     LT  ER ++ + 
Sbjct: 7  RKQYKPFEYPWAFDFWKRQQQIHWMPEEVPLGEDCRDWAQ--KLTPHERNLLTQI 59


>gi|213159370|ref|YP_002321413.1| rr2 [Oryctes rhinoceros virus]
 gi|202073556|gb|ACH96232.1| rr2 [Oryctes rhinoceros virus]
          Length = 400

 Score = 65.6 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 97/306 (31%), Gaps = 32/306 (10%)

Query: 10  IQAGEKRVNVDDKRMLNAR--SDVNQ-LLPL--KYGWAWEKYLSACNNHWMPTEVPMQDD 64
           I        +  + +L+       NQ L P   K+   ++ +L   +  W   E     D
Sbjct: 22  IDMDTNESTLPIEDILDPDNLKHRNQTLYPPARKFKDTYDLWLKHQSCFWSVHENDPSVD 81

Query: 65  LALWKSKNGLTDDER-LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
              +++   +T  E   ++   +G  A  +S+V + I   +   +++ E +     Q   
Sbjct: 82  RDRFET---MTPKEFQEILLCTVGCIAIGDSIVLDRIANGLKERVTSIELKAMFSDQEAR 138

Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
           E +H   +  ++                  S   K  +              T     D 
Sbjct: 139 EFIHKKMYSNMLDVSHRA--------NYYRSEEFKNEYM---------SVLETLADKYDI 181

Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
            ++Q    F ++ E + F   F  I           + +    +MRDE +H         
Sbjct: 182 GYVQVQMFFIMMCEIILFTPMFQTICYAACKGYCPKLCDLNLLVMRDEYIHYENARLQSF 241

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
           + K +      ++F +       E TL   A        G    N    E++ + + +  
Sbjct: 242 KFKTKLD----RKFARTVLAEFSELTLQLFAKIIGDYDDGV--YNFKHVERHFKHVVHGF 295

Query: 304 CHQIGL 309
             + GL
Sbjct: 296 MSENGL 301


>gi|196040733|ref|ZP_03108032.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           NVH0597-99]
 gi|206977638|ref|ZP_03238531.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           H3081.97]
 gi|217958931|ref|YP_002337479.1| ribonucleoside-diphosphate reductase, subunit beta [Bacillus cereus
           AH187]
 gi|222095088|ref|YP_002529148.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           Q1]
 gi|229138142|ref|ZP_04266740.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           BDRD-ST26]
 gi|229195652|ref|ZP_04322418.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           m1293]
 gi|196028523|gb|EDX67131.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           NVH0597-99]
 gi|206744211|gb|EDZ55625.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           H3081.97]
 gi|217064629|gb|ACJ78879.1| ribonucleoside-diphosphate reductase, subunit beta [Bacillus cereus
           AH187]
 gi|221239146|gb|ACM11856.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           Q1]
 gi|228587901|gb|EEK45953.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           m1293]
 gi|228645487|gb|EEL01721.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           BDRD-ST26]
          Length = 133

 Score = 65.6 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           +DES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL 
Sbjct: 4   KDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIY--TSIGL- 60

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
                +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +   Y +  
Sbjct: 61  VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKAT 119

Query: 348 ELK 350
            ++
Sbjct: 120 NVE 122


>gi|228957728|ref|ZP_04119472.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801971|gb|EEM48844.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 133

 Score = 65.6 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           +DES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL 
Sbjct: 4   KDESIHGVFVGILAQQIFAELSTEEQQEVQKETQELLMELYEIEMAYTEEIY--TSIGL- 60

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
                +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +   Y +  
Sbjct: 61  VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKAT 119

Query: 348 ELK 350
            ++
Sbjct: 120 NVE 122


>gi|206968346|ref|ZP_03229302.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH1134]
 gi|228951834|ref|ZP_04113932.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229069005|ref|ZP_04202298.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           F65185]
 gi|206737266|gb|EDZ54413.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
           AH1134]
 gi|228714117|gb|EEL65999.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           F65185]
 gi|228807757|gb|EEM54278.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 133

 Score = 65.6 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           +DES+H  F   +  QI  E      +E Q++++ +L E   +E+AY  E      +GL 
Sbjct: 4   KDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIY--TSIGL- 60

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
                +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +   Y +  
Sbjct: 61  VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKAT 119

Query: 348 ELK 350
            ++
Sbjct: 120 NVE 122


>gi|229172094|ref|ZP_04299659.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           MM3]
 gi|228611437|gb|EEK68694.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
           MM3]
          Length = 133

 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
           +DES+H  F   +  Q+ +E      +E Q++++ +L E   +E+AY  E      +GL 
Sbjct: 4   KDESIHGVFVGILAQQLFVELSAEDQQEVQKETQELLMELYEIEMAYTEEIY--TSIGL- 60

Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
                +++++ AN+    +GLEP F+  E NP   ++ +    K  +FF  +   Y +  
Sbjct: 61  VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKAT 119

Query: 348 ELK 350
            ++
Sbjct: 120 NVE 122


>gi|219556030|ref|ZP_03535106.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
           tuberculosis T17]
 gi|289568136|ref|ZP_06448363.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T17]
 gi|289541889|gb|EFD45538.1| ribonucleoside-diphosphate reductase subunit beta nrdB
           [Mycobacterium tuberculosis T17]
          Length = 210

 Score = 65.2 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 65/190 (34%), Gaps = 13/190 (6%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
                W P ++    D A W+    L+DDER    R    F + E  V       ++  R
Sbjct: 27  GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83

Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
                    YL + AFEEA H+  F+  + ++G+ E            +     +   + 
Sbjct: 84  AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136

Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQ 225
             L           +    ++    +  + EGM   TG+     S+  A    G+ E  +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHRSVWNAQSFPGMQELVR 196

Query: 226 YIMRDESLHL 235
            I  DE    
Sbjct: 197 RIGDDERRTW 206


>gi|323508655|dbj|BAJ77221.1| cgd6_700 [Cryptosporidium parvum]
          Length = 285

 Score = 64.8 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 82/276 (29%), Gaps = 28/276 (10%)

Query: 65  LALWKSKNGLTDDERLMIKRNLGFFASSE--SLVANNIVLAIYRHLSNPECRQYLLRQAF 122
           +        + +     I+         +   L    +   +   +  PE R Y      
Sbjct: 1   MEDKTKLMNMDEKLLDYIEMAFAKRIYIDNTCLDTVLLTCELLGQVQVPEARGYFSFTMC 60

Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA-------KANWALQYTQTLSSPSFT 175
            E ++   F   +  +  ++ ++                   K  +     + L+     
Sbjct: 61  MENIYKELFMNYVEMIRKNKEKIERTDEVEKKDENNLNSKISKEEYEYNLEKKLNELEDF 120

Query: 176 TGTKD------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN-----KMVGIAEQY 224
           T  K+       +     +  ++YV+ + ++  +     LS    N         + +  
Sbjct: 121 TKMKELVGNFYDEDTLFSEKLIYYVIIKKIFSSSIHLLRLSFSMRNISESELPTQLCDGL 180

Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
             I RDE   + F + +          + TK    +   +L +A +LE  +    +    
Sbjct: 181 DRIRRDEQYQVEFCLSIAK-------SMKTKPSNDQVVNLLEQAIMLEKNFIFSIVDPQV 233

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
           + +       ++ F A+     +     F  + NPF
Sbjct: 234 LQIEREDIVAFLLFNADEILVDLKYPRQFNVS-NPF 268


>gi|213024643|ref|ZP_03339090.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 119

 Score = 64.8 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 4/110 (3%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8   QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
            L + E+ +   NL +    +S+   +  +A+   +S PE   ++   AF
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAF 114


>gi|70607921|ref|YP_256791.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           acidocaldarius DSM 639]
 gi|68568569|gb|AAY81498.1| ribonucleotide reductase, small chain [Sulfolobus acidocaldarius
           DSM 639]
          Length = 330

 Score = 64.4 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 80/258 (31%), Gaps = 17/258 (6%)

Query: 12  AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
             E ++  +  +      D N   P++       +       W   E+    D   WK  
Sbjct: 10  TKEGKILHNKFKSTVEGLDWNT-FPMR------LFEIGEKFRWTAYELDFSKDREDWKKL 62

Query: 72  NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
                 +  +I                  +      L   E   YL + A +EA H+  F
Sbjct: 63  KPSDRTQNKIISSYFL-AGEECVARDILPLANAMEELGLIEEALYLTQFARDEANHTVAF 121

Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
           +    S+G  EG                 +   + + + +         + +  ++ +  
Sbjct: 122 RKWFESVGETEG-------IYDFTYKNEPYRRLFYEIIPTDMRRLYNDPSPENIVRAVVS 174

Query: 192 FYVVFEGMWFYTGFAQI--LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
           +  V EG+   TG+             + G+ +  + I RDE+ H++FG  V   +   +
Sbjct: 175 YNFVAEGILAETGYYGYVKGYEKILPALPGLYKMVKLITRDEARHISFGAYVAALMISMH 234

Query: 250 PHLWTKEFQQKSRTMLHE 267
                 EF +    +  E
Sbjct: 235 GDSVLNEFNRYFGQLTQE 252


>gi|312865062|ref|ZP_07725290.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
 gi|311099173|gb|EFQ57389.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
           downei F0415]
          Length = 318

 Score = 64.4 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 21/265 (7%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A +  W+ T +P+++D   W+   GL+  E+  + R+L   A   +  +      I 
Sbjct: 25  WERATSLFWLDTRIPIEEDKPKWE---GLSKKEQDQLNRSLLLLAQEATYQSIEAGQIIR 81

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
               + +    L    F E V +  +  I+     +      ++ +           L+ 
Sbjct: 82  NSQRSQQEIAILNNLQFTEMVATKAYNRILRVFNDERD--LQVWLDWVDGQEFLQKRLKT 139

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
              + +       +              +  EG+  Y+  A  L L ++     +    +
Sbjct: 140 IDAIYNSKDPLAKR-----------FAAICLEGLMNYSLLAYPLYLWQSKGFTSLGLMLE 188

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGF 284
            ++R+ESLH  +    +  +  E      K+F+  +R  + +    E     +       
Sbjct: 189 MVIRNESLHCYYLGHKVKLLLTEVDQDEAKDFENWARDFVDKLVQQEEDLIEDYFLLDDA 248

Query: 285 VGLNAPSCEQYMQFIANRRCHQIGL 309
             L      Q     AN      GL
Sbjct: 249 KSLAKDLLHQ----EANHILENFGL 269


>gi|70946075|ref|XP_742789.1| ribonucleotide reductase small subunit [Plasmodium chabaudi
           chabaudi]
 gi|56521965|emb|CAH76799.1| ribonucleotide reductase small subunit, putative [Plasmodium
           chabaudi chabaudi]
          Length = 211

 Score = 64.0 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 68/181 (37%), Gaps = 13/181 (7%)

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-AN 215
              +  L+Y       ++     +A+  F   L + Y+    + F  G + + S  +   
Sbjct: 20  EIIDQVLKYESVFKKQNWLYNEFEANIPFYNKLILLYIS--KVLFNGGLSIVSSYCKENG 77

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
            +  +   Y  I RDE L  +F +   N +  +  +       +        A  LE  +
Sbjct: 78  ILPCLTSVYDKIQRDEYLQGDFSVMCCNHLNNKLKY-------ENVLDYFKTAVDLEYNF 130

Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW--MSEVIDLKKEK 333
             E +    + +     +Q++Q++A+     +     +  ++ PF W   S++I  +  K
Sbjct: 131 CVEMLDFDSLKITKDQVKQFLQYLADTMLVNLKYSKHYN-SKYPFTWKEFSKIIVSENAK 189

Query: 334 N 334
           N
Sbjct: 190 N 190


>gi|171779598|ref|ZP_02920554.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281700|gb|EDT47134.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 138

 Score = 64.0 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++  +     WE         W+ T +P+ +DL  W+    L+D E+ ++ +  G  
Sbjct: 9   NWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVFGGL 62

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
              +++ + + V AI   +  P     L    F E+VH+ ++  I ++L       E+F 
Sbjct: 63  TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122

Query: 148 MYREVPSITAKANWAL 163
                  +  K     
Sbjct: 123 WTNNNEYLQKKDQNHQ 138


>gi|171779596|ref|ZP_02920552.1| hypothetical protein STRINF_01433 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281698|gb|EDT47132.1| hypothetical protein STRINF_01433 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 144

 Score = 64.0 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           M  IAE  + I+RDES+H  +          E       + +     +L++    E  Y 
Sbjct: 1   MANIAEIIKLIIRDESVHGTYIGYKFQLGFNELSEKEQDDLRDWMYDLLYQLYENEENYT 60

Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEK 333
                +  VG        ++++ AN+    +G +PLF       NP   M+ +       
Sbjct: 61  KTLYDQ--VGWT-EEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MNGISTGTSNH 116

Query: 334 NFFETRVTEYQQGA--ELKWD 352
           +FF      Y  G+   ++ D
Sbjct: 117 DFFSQVGNGYLLGSVEAMQDD 137


>gi|295398338|ref|ZP_06808380.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
 gi|294973477|gb|EFG49262.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
           viridans ATCC 11563]
          Length = 332

 Score = 62.5 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 89/271 (32%), Gaps = 25/271 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A +  W+ T VP+++D + W     L   E+  + R L    +  +  +N +   I 
Sbjct: 40  WERATSLFWLDTRVPIENDRSKW---ANLQLQEQEQLNRLLILLTNIATYQSNELGEIIR 96

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWAL 163
               + +    +    F E VH+  +  I++    D    + F+     P +        
Sbjct: 97  DSARSQQEIAIINNFQFTEMVHTKAYNRILSIFNQDIGSQKAFDWVDTNPQVRDYIEKIH 156

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
              Q+                         +  EG+  YT  + +  L      + +   
Sbjct: 157 MTYQSADPLKKR---------------FMAICVEGILNYTYLSYLFELWLDRNFLNLGSM 201

Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
            + I+R+ESLH  +    +N +  E       +F+     ++ +  +L           G
Sbjct: 202 LKMIVRNESLHCYYLNYKVNLLLKEASSKQVAQFKSWGMEIVDDFVVLADQLIDTFYTIG 261

Query: 284 FVG-LNAPSCEQYMQFIANRRCHQIGLEPLF 313
               +      Q     AN     IGL  ++
Sbjct: 262 SSKTVAFNLVMQ----EANHILAGIGLNEIY 288


>gi|289803661|ref|ZP_06534290.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 106

 Score = 62.5 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 3/100 (3%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
               ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10  NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           +++       ++      P     L   +F EAVH+ ++ 
Sbjct: 67  DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYS 106


>gi|262204313|ref|YP_003275521.1| ribonucleotide reductase subunit beta-like protein [Gordonia
           bronchialis DSM 43247]
 gi|262087660|gb|ACY23628.1| Ribonucleotide reductase beta subunit-like protein [Gordonia
           bronchialis DSM 43247]
          Length = 324

 Score = 62.5 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 89/268 (33%), Gaps = 15/268 (5%)

Query: 44  EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
             +++     W P  +    D   W+    + DDER  +   +    + E  V  ++   
Sbjct: 36  HLFVTGNARFWDPRGIDFSTDALDWRE---MRDDERRFVTYLVAQICAGEEAVTRDVQPF 92

Query: 104 IYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
                ++       YL + AFE+A H+  F+  + + GL +          P +     +
Sbjct: 93  GQAAAADGRLGDEMYLSQVAFEKAKHTEVFRLWMDAAGLVDD-------LNPVLDTNPFY 145

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGI 220
                + L +      T  + +  ++ +  F+ V  G    TG   +  +      + G+
Sbjct: 146 RQLIVEELPAALRRMETDPSPENQIRAVITFHQVIGGTLACTGHRMLQRICSAYGILPGM 205

Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
               + I  DE  H+ +G     ++   +  L      + S  M     +  I +     
Sbjct: 206 RTLIRMISTDERRHMAWGTYTCRRLVAADDALADVAVTRMSELMPLALGM--INWLDGEF 263

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIG 308
                 L+      Y    + RR   IG
Sbjct: 264 APLPFDLSTAEFIAYAADRSRRRLDAIG 291


>gi|171779438|ref|ZP_02920402.1| hypothetical protein STRINF_01283 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282055|gb|EDT47486.1| hypothetical protein STRINF_01283 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 317

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 93/276 (33%), Gaps = 19/276 (6%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A +  W+ T +P+++D   W     L  +E+  +KR L    +  +  +  +   + 
Sbjct: 25  WERATSLFWLDTRIPIENDFTNW---VKLNLEEQEQLKRLLILLTNLSTNQSIEVGEIVR 81

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
               + +    L    F E V++  +  I+ +   +        ++        +  L+Y
Sbjct: 82  NGKCSQQEVAILNNIQFIEMVNTKAYNRILLTFDKEIN-----LKKSFEWVDNESRVLEY 136

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
              +++    +                 +  EG+  Y   A +  L    +   +    +
Sbjct: 137 LNDINTVYRESSLVKKR--------FIALCIEGLLNYAYLAYLFELWINKEFNNLGSMLE 188

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I+R+ESLH  +    I  +  E+     + F+      ++    L I    +       
Sbjct: 189 MIIRNESLHCFYFSHKIKLLLKESDLQEVERFKAWGYETVNHFVKLGINLIGDFYYLKES 248

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
            + A +    +   AN     IGL+  F +      
Sbjct: 249 KIIAKNL---ILQEANNILMGIGLKEQFNFNAEVLK 281


>gi|56410463|ref|YP_145837.1| ribonucleotide-diphosphate reductase subunit beta [Geobacillus
           kaustophilus HTA426]
 gi|56378360|dbj|BAD74269.1| ribonuleotide reductase small subunit [Geobacillus kaustophilus
           HTA426]
          Length = 292

 Score = 62.1 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 20/211 (9%)

Query: 42  AWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
           AW+ Y  A     W P E+ + +D   +K    L +  R  +      F ++E     N+
Sbjct: 32  AWKLYQMAIRFGTWNPQEIDLSEDKKHFKQ---LDEQRRAYLIHFCTGFWNAE----ENV 84

Query: 101 VLAIYRHLSNP---ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
            L     +      E + +L  Q  +E  H+  F      +   + E+  +     ++  
Sbjct: 85  ALKFCPWIMIAPSIEQQAFLSTQLVDEFKHTEFFIRYFAEVLQTDREVKVLNLVHDTLDE 144

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANK 216
           +A   L             G ++ +   L+ L  +  V EG+    G+       G+   
Sbjct: 145 RARQLLSVLDK--------GPEEREIAMLEGLVHYQGVIEGIQAMVGYEVFEAVYGQYGL 196

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
             G+ E ++ I RDE  H+ +G+ ++  +  
Sbjct: 197 FPGLKEGFKQIKRDEGRHVGYGLRMMKYLSK 227


>gi|121729792|ref|ZP_01682228.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|121628467|gb|EAX60957.1| conserved hypothetical protein [Vibrio cholerae V52]
          Length = 107

 Score = 61.3 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           +K+ +   + M   +  +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
            L D E+ +   NL +    +S+   +  +A+   +S PE  
Sbjct: 65  KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELE 106


>gi|256378482|ref|YP_003102142.1| ribonucleotide reductase [Actinosynnema mirum DSM 43827]
 gi|255922785|gb|ACU38296.1| ribonucleotide reductase [Actinosynnema mirum DSM 43827]
          Length = 320

 Score = 61.3 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 88/276 (31%), Gaps = 17/276 (6%)

Query: 38  KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
           K     + Y     + W   ++    D   W++   +TD ER         F  +E    
Sbjct: 38  KLPEYIDLYKRYFTHRWNAYDLDFSQDAVDWRT--KMTDVERKAFTEIAAAFHHAER--Q 93

Query: 98  NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
             + L I+    + E + YL  Q  +EA H+  F      +    G+             
Sbjct: 94  VEVELPIFMLTGSEEAKMYLCTQLEDEARHTLFFDRFYREVVGLPGDSVEELLASSFPHV 153

Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANK 216
              +   +              +   + ++    +++  EG+   T     L+  R    
Sbjct: 154 PETFVGAFGLLSYLADDLRVDPENPAKRVRYATAYFMWIEGVLALTIMKLTLTYCRTKGY 213

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
           + G    +    RDE+ H+ FG+  +     E+P         +    +HE    E+A  
Sbjct: 214 LPGYYTGFIASCRDEARHVQFGMRFLRDSVQEDP---------RLLHEIHETLRTELAMN 264

Query: 277 HET---MPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
                  P   +G +      +M    N +   +G+
Sbjct: 265 GGASVPAPLEPLGFSEEEVVHFMIRQVNNKLSDVGI 300


>gi|167837964|ref|ZP_02464823.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
          thailandensis MSMB43]
          Length = 70

 Score = 60.2 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA 49
          E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ 
Sbjct: 35 EARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAG 70


>gi|147800139|emb|CAN68817.1| hypothetical protein VITISV_036653 [Vitis vinifera]
          Length = 924

 Score = 59.0 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
             +  E  +   ENPF WM E I L+   NFF+ R+ +YQ+ + + 
Sbjct: 745 VALXYERKYNV-ENPFDWM-EFISLQGNANFFQRRMGDYQKASIMS 788


>gi|169838797|ref|ZP_02871985.1| ribonucleotide-diphosphate reductase subunit beta [candidate
          division TM7 single-cell isolate TM7a]
          Length = 71

 Score = 59.0 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
          D  QL P++Y WA+  Y  A  N W P EV +  DLA +K    L    R+++K+ L 
Sbjct: 16 DGLQLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFK---NLQKTRRMLLKQLLA 70


>gi|66957902|gb|AAY59065.1| ribonucleotide reductase small subunit [Tortoise herpesvirus]
          Length = 215

 Score = 59.0 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 14/201 (6%)

Query: 49  ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
           A  N W   E    DD+  +   + L  +     +    F ++++  V  N +  + +  
Sbjct: 20  AIKNRWAEDEFMYTDDIKDF---SRLDPEALDFYRFIFTFLSAADDKVNIN-LDQLKQLF 75

Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
              +   Y   Q   E VHS T+  +  +L  ++ +    Y E             +   
Sbjct: 76  PQKDVHHYYATQEDIECVHSRTYAGVQLALFNNDDDARRRYIEANVSHPTIETKFDWLN- 134

Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
                    TK  + E + + ++  ++ EG++F   FA I  L        +      I 
Sbjct: 135 ---------TKIMENESVPEKYLLMILVEGIFFVASFASIAYLRNHGGFNSVCRSNDLIS 185

Query: 229 RDESLHLNFGIDVINQIKIEN 249
           RDE++H      + N    ++
Sbjct: 186 RDEAIHTQASCCIFNNYLKDH 206


>gi|270614678|ref|ZP_06221723.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae HK1212]
 gi|270317993|gb|EFA29282.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
           influenzae HK1212]
          Length = 103

 Score = 59.0 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 14  EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
           + + +   + M      +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8   QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
            L + E+ +   NL +    +S+   +  +A+   +S P
Sbjct: 65  ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIP 103


>gi|221309908|ref|ZP_03591755.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221314231|ref|ZP_03596036.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221319154|ref|ZP_03600448.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221323427|ref|ZP_03604721.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           subtilis subsp. subtilis str. SMY]
          Length = 123

 Score = 58.6 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
            +  +I  +      KE    +  +L E    E+ Y  +   +  VGL AP  ++++++ 
Sbjct: 1   MLAQEIYKKQTPQKQKELYAWALNLLQELYENELEYTEDVYDQ--VGL-APDVKKFIRYN 57

Query: 300 ANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTEYQQGAE 348
           AN+  + +G +  F+  + NP   +   ++ K +  +FF T+   Y++   
Sbjct: 58  ANKALNNLGFDHWFEEEDVNPI--VINGLNTKTKSHDFFSTKGNGYKKATV 106


>gi|9631114|ref|NP_047784.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
 gi|3822382|gb|AAC70333.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
           MNPV]
          Length = 359

 Score = 58.6 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 70/219 (31%), Gaps = 19/219 (8%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
               +  Q+ P KYG +W  Y     N+W   E    DD+  +     L  + +    R+
Sbjct: 28  GPTGNALQIWPPKYGLSWSFYKDHQANYWSAEEHDPLDDINGF---VKLPREWQNAALRS 84

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
               A  +  V   I  +      + E       Q   E VH   +  ++         +
Sbjct: 85  FAVLAIGDDAVMKFIDESGLEWEESTEW--LFKDQGARETVHKIVYNKMLQLANHSRDYV 142

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
            N +     ++        Y  +  +  F +  + A            +  E   F   F
Sbjct: 143 MNSFTSDDFVS--------YMLSGETLEFRSDLRKACFLIKM------IFCERYLFAVPF 188

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
             I  LG  N +    +    +M+DE LH    + ++N 
Sbjct: 189 LIINILGETNAINTCVKINMQVMKDEHLHYLHAVALLND 227


>gi|146322251|ref|YP_001174720.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis]
 gi|145968742|gb|ABQ00020.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis]
          Length = 317

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 93/276 (33%), Gaps = 19/276 (6%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A +  W+ T +P+++D   W     L  +E+  +K  L    +  +  +  +   + 
Sbjct: 25  WERATSLFWLDTRIPIENDFTNW---IKLNLEEQGQLKCLLILLTNLSTNQSIEVGEIVR 81

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
               + +    L    F E V++  +  I+ +   +            ++     W    
Sbjct: 82  NGKCSQQEVAILNNIQFIEMVNTKAYNRILLTFDKE-----------INLEKSFEWVDND 130

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           ++ L   +             +      +  EG+  Y   + +  L    +   +    +
Sbjct: 131 SRVLEYLNDINTVYRESSLIKKRFI--ALCVEGLLNYAYLSHLFELWINKEFNNLGTMLE 188

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I+R+ESLH  +    +  +  E+     + F+  S   ++    L +    +     ++
Sbjct: 189 MIIRNESLHCFYFSHKVKLLLKESDPKEVERFKAWSYETVNHFVKLGLNIIDDFY---YL 245

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
             +    +  +   AN     IGL+  F + +    
Sbjct: 246 KESKKIAKNLILQEANNILMGIGLKEQFGFNDEVLK 281


>gi|47200896|emb|CAF87761.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 441

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 64/214 (29%), Gaps = 19/214 (8%)

Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157
           V    + +   E R +   Q   E +HS  +  +I +   +  E   LFN    +P +  
Sbjct: 234 VERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIETLPCVKK 293

Query: 158 KANWALQYTQTLSSPSF----------TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
           KA+WAL +     + +           T     +            +   G     G   
Sbjct: 294 KADWALNWIGNQKASTVSARPTLRAAPTRRRPHSLPVLCSRRARGGLCRRGGNLLLGLLC 353

Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
              L    +      +   + R            +    ++ P   T     +       
Sbjct: 354 RHLLAEEARPDA---RPDLLQR-ADQQRRGSALRLRLSDVQAPAAQTVGTDGRRHHQERR 409

Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
                +      +P   +G+N    ++Y++F+A+
Sbjct: 410 GDRAGVP--DRALPVKLIGMNCQLMKRYIEFVAD 441


>gi|9629972|ref|NP_046190.1| ribonucleotide reductase small subunit [Orgyia pseudotsugata MNPV]
 gi|1911280|gb|AAC59033.1| ribonucleotide reductase small subunit [Orgyia pseudotsugata MNPV]
          Length = 349

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 81/259 (31%), Gaps = 20/259 (7%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           +  Q+ P KYG ++  Y     N+W   E    DD+  +     L  + +  + R+    
Sbjct: 36  NALQIWPPKYGLSYAFYKDHQANYWSAEEHDPLDDINGF---VKLPREWQNAVLRSFAVL 92

Query: 90  ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
           A  +  V   I  +  +   + E       Q   E VH   +  ++         + + +
Sbjct: 93  AIGDDAVMKFIDESGLKWEESTEW--LFKDQGARETVHKIVYNKMLQLANYSTDYVMSSF 150

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
                ++            L   +    +      FL  +       E   F   F  I 
Sbjct: 151 TSDDFVSYM----------LGGEALEFYSDHRKACFLIKMI----FCERYLFAVPFLIIN 196

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTKEFQQKSRTMLHEA 268
            LG  N +    +    +M+DE +H    + ++N IK   N     + F       +   
Sbjct: 197 ILGETNAINTCVKINMQVMKDEHVHYLHAVALLNDIKESANTTAINELFCHIGDQFVKIV 256

Query: 269 TLLEIAYAHETMPKGFVGL 287
             +      +   K   GL
Sbjct: 257 EPMVAKIGLDLTEKQLAGL 275


>gi|328480216|gb|EGF49142.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 115

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +       W+ T +P+ +DL  W+S   L+ DE+ ++    G     ++L + + + ++ 
Sbjct: 22  WEKLTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGMASLR 78

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
           +++   +    L    F E+VH+ ++  I ++L   
Sbjct: 79  QNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTP 114


>gi|293570202|ref|ZP_06681272.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
 gi|291609715|gb|EFF38975.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
           faecium E980]
          Length = 317

 Score = 57.5 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 93/276 (33%), Gaps = 19/276 (6%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +  A +  W+ T +P+++D   W     L  +E+  +K  L    +  +  +  +   + 
Sbjct: 25  WERATSLFWLDTRIPIENDFTNW---IKLNLEEQGQLKCLLILLTNLSTNQSIEVGEIVR 81

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
               + +    L    F E V++  +  I+ +   +            ++     W    
Sbjct: 82  NGKCSQQEVAILNNIQFIEMVNTKAYNRILLTFDKE-----------INLEKSFEWVDND 130

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           ++ L   +             +      +  EG+  Y   + +  L    +   +    +
Sbjct: 131 SRVLEYLNDINTVYRESSLIKKRFI--ALCVEGLLNYAYLSHLFELWINKEFNNLGTMLE 188

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I+R+ESLH  +    +  +  E+     + F+  S   ++    L +    +     ++
Sbjct: 189 MIIRNESLHCFYFSHKVKLLLKESDPKEVERFKAWSYETVNHFVKLGLNIIGDFY---YL 245

Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
             +    +  +   AN     IGL+  F + +    
Sbjct: 246 KESKKIAKNLILQEANNILMGIGLKEQFSFNDEVLK 281


>gi|70607929|ref|YP_256799.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
           acidocaldarius DSM 639]
 gi|68568577|gb|AAY81506.1| hypothetical protein Saci_2220 [Sulfolobus acidocaldarius DSM 639]
          Length = 345

 Score = 57.1 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 87/219 (39%), Gaps = 14/219 (6%)

Query: 45  KYLSACNNHWMPTEVP--MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
            +  +    W P +    +Q D   W++   +++ ER + +     F++ E  V+  +  
Sbjct: 34  LWAKSNELFWSPLQFKELIQQDKQDWET---MSESEREISEYIATAFSAGEEAVSRYLAE 90

Query: 103 AIYR--HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
            +     L   E   +L +   EE  H+  F+  + S+G+D+          PS      
Sbjct: 91  LVIALDELGYTEEVLFLNQFQQEETRHTDAFRRWMDSIGMDKDTEKWTTEINPS------ 144

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVG 219
           +   +   L S ++      + +  L+    +    EG+   TGF    ++    + + G
Sbjct: 145 YYELFYVALPSAAYGVKANPSPESILRFTATYMFSIEGIAAETGFYFWRTMWERGRHLKG 204

Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
           I E  + +  DES HL FG  +   +  E+  L+ K  +
Sbjct: 205 IYEIVKRVAADESRHLAFGTYLTTMLIGEDQSLYDKFLE 243


>gi|294669616|ref|ZP_06734683.1| hypothetical protein NEIELOOT_01517 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308529|gb|EFE49772.1| hypothetical protein NEIELOOT_01517 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 81

 Score = 57.1 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
            +GLN     QY+++I N R   +GL   F+  T+NP PW++  +    
Sbjct: 1   MIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 49


>gi|296086890|emb|CBI33063.3| unnamed protein product [Vitis vinifera]
          Length = 75

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
           +NA    QY++F+A+     IG E  +   ENPF WM E I L
Sbjct: 1   MNATLMSQYIKFVADHLLVAIGYERKYNV-ENPFDWM-EFISL 41


>gi|213420352|ref|ZP_03353418.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 88

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               +GLN     QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 6   DGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 52


>gi|213855386|ref|ZP_03383626.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
          Length = 80

 Score = 56.3 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
            +GLN     QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 1   MIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 44


>gi|213581345|ref|ZP_03363171.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 90

 Score = 56.3 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 275 YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
           +A      G  +GLN     QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 1   WADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 54


>gi|284176152|ref|YP_003406429.1| Ribonucleotide reductase beta subunit-like protein [Haloterrigena
           turkmenica DSM 5511]
 gi|284017809|gb|ADB63756.1| Ribonucleotide reductase beta subunit-like protein [Haloterrigena
           turkmenica DSM 5511]
          Length = 302

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 16/208 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y +A   HW P E+ ++ D    +    L D     +K++L  F + E  V  ++    
Sbjct: 22  YYRNAVEKHWDPHEIDLEADR---EGATDLPDPAFEGLKQSLALFGAGEESVTEDLAPLA 78

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
              L + E + ++  Q +EE+ H+  F      +   E E        P+      W  +
Sbjct: 79  V-VLEDIEDQLFITTQLYEESKHTDFFDRYWREVIHAEEERRGQELSSPADEK---WFNE 134

Query: 165 YTQTL----SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM--- 217
               L             +D  +   +    +++  EG+   TG+  +       +    
Sbjct: 135 PYDELFERNERAMVQLLEEDTPKNRAKAHCHYHLTIEGILAQTGYYGLTLAYGEQEPDLP 194

Query: 218 --VGIAEQYQYIMRDESLHLNFGIDVIN 243
              G+ E  + +  DE  H+ FG+  + 
Sbjct: 195 DLPGLVEGLKLVRSDEGRHVGFGMAQLK 222


>gi|60416882|emb|CAD71202.1| ribonucleoside-diphosphate reductase small subunit [Bacillus
           subtilis]
          Length = 140

 Score = 55.9 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  I
Sbjct: 26  FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPII 82

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAK 158
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F   +    +  K
Sbjct: 83  AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKK 139


>gi|281181724|dbj|BAI58041.1| putative ribonucleoside-diphosphate reductase [Edwardsiella tarda]
          Length = 169

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 16/164 (9%)

Query: 87  GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146
            +    +S+   +  +A+   +S PE   ++   +F E +HS ++ +II ++  D   +F
Sbjct: 2   RYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVTDPSLVF 61

Query: 147 NMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFL---------------QDLF 190
           +       I  +A     Y   L   + +     +   +                     
Sbjct: 62  DDIVSNEEILKRARDISAYYDDLIETTGYYHLLGEGTHQINGKPVTVSLRELKKKLYLCL 121

Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
           +     E + FY  FA   +      M G A+  + I RDE+LH
Sbjct: 122 MSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 165


>gi|328553050|gb|AEB23542.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
           amyloliquefaciens TA208]
          Length = 93

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPW 322
           ML E    E+ Y  +   +  VGL AP  ++++++ AN+  + +G +  F+  + NP   
Sbjct: 1   MLQELYENELEYTEDVYDQ--VGL-APDVKKFIRYNANKALNNLGFDHWFEEEDVNPIV- 56

Query: 323 MSEVIDLKKEKNFFETRVTEYQQGAE 348
           ++ +    K  +FF  +   Y++   
Sbjct: 57  INGLSTKTKSHDFFSMKGVGYKKATV 82


>gi|21686785|ref|NP_663285.1| ribonucleotide reductase 2a [Phthorimaea operculella granulovirus]
 gi|21637101|gb|AAM70318.1| ribonucleotide reductase 2a [Phthorimaea operculella granulovirus]
          Length = 345

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 70/227 (30%), Gaps = 19/227 (8%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
           Q+ P  Y  +W  Y     NHW   E    DDL+ ++    +T   +  + ++    A  
Sbjct: 35  QIWPPSYYPSWFYYQQHQANHWFANEHDPLDDLSGFE---KITPAWQNALLQSFAALAIG 91

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
           +  V   I     +   +   +     QA  E  H   +  ++    +            
Sbjct: 92  DDKVMCLISENELQWEES--TKWMFADQAARETTHKIAYNRMLELARVST--------FF 141

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
            + T  ++    Y         +     A       L       E   F   F  I  +G
Sbjct: 142 TTDTLTSDEYANYLMDKVDLDVSNVNAKAKFLITMMLC------ERYLFAAPFLIINLMG 195

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
            +  +    +    +M+DE  H    + V++       +++ +   +
Sbjct: 196 ESGFINTCVKINMQVMKDEHSHYAHSVQVLHDSCQNFENIFNELCAK 242


>gi|134303461|ref|YP_001111330.1| ribonucleotide reductase small subunit [Gryllus bimaculatus
           nudivirus]
 gi|134022847|gb|ABO45396.1| ribonucleotide reductase small subunit [Gryllus bimaculatus
           nudivirus]
          Length = 371

 Score = 54.4 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 74/240 (30%), Gaps = 25/240 (10%)

Query: 43  WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
           +  +L      W P E+ +  D A +        ++   I   +    +    +    + 
Sbjct: 72  YNFWLKQVALAWSPEEISLSKDKATFHRA----PEQLKKISACMLGMLAIGDNIVLQNLS 127

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
            +   ++N      + RQ   E  HS  +   +  L      ++       +        
Sbjct: 128 DVSEIITNNYVLNAISRQEDVEKTHSDFYSRSLDVLNDVGKSVYYKSEHFINNEL----- 182

Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
                          +K      L  +  F ++ E ++F   F  +  LG        A 
Sbjct: 183 ---------YDIQQFSKKHSTNNLNKIAFFIMICERLYFLPAFVTVAYLGITGYAPHTAL 233

Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
             +Y+MRDE+LH N   ++    +        K  +Q++  +L+E   +           
Sbjct: 234 GNRYVMRDENLHYNLWRNISANFE-------YKMNKQEALNILNEFEYILKCTIKNIFKN 286


>gi|6581175|gb|AAF04633.2|AF099142_1 small subunit of ribonucleotide reductase [shrimp white spot
          syndrome virus]
          Length = 100

 Score = 54.0 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 15/48 (31%)

Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
          V+     +     +     P+ +   WE Y       W   E+  + D
Sbjct: 52 VDTFKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERD 99


>gi|213585578|ref|ZP_03367404.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 189

 Score = 53.6 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 72/187 (38%), Gaps = 22/187 (11%)

Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
            PE   ++   AF E +HS ++ +II ++  D   +F+       I  +A     Y   L
Sbjct: 2   IPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDEL 61

Query: 170 SS-----------------PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
                               +     ++  ++    L     + E + FY  FA   +  
Sbjct: 62  IEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFA 120

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEA 268
               M G A+  + I RDE+LHL     ++N  +  +++P +    +E +Q+   +  +A
Sbjct: 121 ERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQA 180

Query: 269 TLLEIAY 275
              E  +
Sbjct: 181 AQQEKEW 187


>gi|68010653|ref|XP_670832.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56486449|emb|CAH96459.1| hypothetical protein PB000804.01.0 [Plasmodium berghei]
          Length = 65

 Score = 53.6 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56
          ++    ++++LN  S+   L P+ Y   W  Y  A  + W  
Sbjct: 24 QKTKESNEKILNKESNRFTLHPIIYPEVWNFYKKAEASFWTA 65


>gi|284046710|ref|YP_003397050.1| sterol-binding domain protein [Conexibacter woesei DSM 14684]
 gi|283950931|gb|ADB53675.1| Sterol-binding domain protein [Conexibacter woesei DSM 14684]
          Length = 419

 Score = 53.3 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 77/233 (33%), Gaps = 13/233 (5%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           + Y   + ++       W  TE+    D   W+ +    +    +   +L F        
Sbjct: 10  ISYEDLYARWERGN---WRATEIDFTADSEQWQERFDAFERRAALWNYSLFFHGEDAVAD 66

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
             +  +         E + +L  Q  +EA H+  F+  +  +                  
Sbjct: 67  NLSPYIDAAPLE---EQKYFLTTQQVDEARHAVFFKRFMHEVCDVGDGTMAGGLAAIQPD 123

Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FAQILSLGRAN 215
               +   +   L + +       +  +    L +++++ E     +G       L + +
Sbjct: 124 LTWGFRRVF-DRLDTMADELRRDRSKPKLAAALALYHLIVEATLAQSGQHFITGYLEQRD 182

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
            + G     + +  DE  H+ FG+ ++  ++ E+P     E ++    +L E 
Sbjct: 183 VLPGFYGGMRNVEFDEQRHIGFGVKLLYDLQREDP-----ECKEAVAELLREV 230


>gi|46309416|ref|YP_006306.1| ORF38 [Agrotis segetum granulovirus]
 gi|46200633|gb|AAS82700.1| ORF38 [Agrotis segetum granulovirus]
          Length = 369

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 69/254 (27%), Gaps = 14/254 (5%)

Query: 26  NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
           N+ + V ++ P  Y  +W  Y     N+W  TE    + L        L    +  +  +
Sbjct: 30  NSETLVLKIWPPTYAPSWHYYQLHQANYWSATE---HEPLEDVSGFIKLDSQWQKAVLHS 86

Query: 86  LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
               A  +  V   I           +       Q   E +H   +  ++          
Sbjct: 87  FAILAIGDDAVMQFIDENDLEWEECTQW--MFKDQGARETIHKIVYNKMLHLADHS---- 140

Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
                   S+     +        S         + +        +  +  E   F T F
Sbjct: 141 ---SEFTTSMLTSKKYINYILHNNSDLKLQKYKLEDEVMKKAAFLIKMIFCERYLFATPF 197

Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
             I  +G +  +         +M+DE +H    + +   +K +       E  +    M 
Sbjct: 198 LVINLMGESGFLNNCVRINMQVMKDEHVHYLHAVQLFRDLKPK--SDQIDEINKLFFDMA 255

Query: 266 HEATLLEIAYAHET 279
            E   +      + 
Sbjct: 256 QEFVEIVENMIMKI 269


>gi|45259565|dbj|BAD12265.1| p53-inducible ribonucleotide reductase small subunit 2 short form
           beta [Homo sapiens]
          Length = 66

 Score = 52.9 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
            ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 20  AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 52


>gi|327197769|ref|YP_004301467.1| gp134 [Brochothrix phage A9]
 gi|299810369|gb|ADJ53168.1| gp134 [Brochothrix phage A9]
          Length = 132

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
            +  E       E Q  +  +L++    E+ Y         +G  A   + ++++  N+ 
Sbjct: 1   MLTREYTQKQRDELQTFAIELLYKLYTNEMKYTEYLY--DEIGWTA-DVKAFVRYNLNKA 57

Query: 304 CHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
              +G++ ++       NP   M+ +       +FF      Y  G
Sbjct: 58  LANLGMDAIYPERAQDVNPIV-MTGLSTESSNHDFFSQVGNSYIMG 102


>gi|328861691|gb|EGG10794.1| hypothetical protein MELLADRAFT_93450 [Melampsora larici-populina
           98AG31]
          Length = 130

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 13/91 (14%)

Query: 33  QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
            L  + Y              W   E+    D+  W+  N L +DE+  IK  L F A+S
Sbjct: 51  VLFSITYDE-----------FWTAGEIDPSKDMHNWE--NRLKNDEKHFIKHILAFLATS 97

Query: 93  ESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
           + +V  N++      +   E + +   Q   
Sbjct: 98  DRIVNQNLIKRYSGEVQAAEAQCFYGFQIMI 128


>gi|213852447|ref|ZP_03381979.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
          Length = 105

 Score = 52.5 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 8/100 (8%)

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           +E +  +  +L E    EI Y        G+V       + ++ + AN+    +G E LF
Sbjct: 2   EELKLFALDLLMELYDNEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALF 57

Query: 314 K---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
                  NP    +   +  +  +FF    + Y  G  ++
Sbjct: 58  PPEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVE 97


>gi|289583058|ref|YP_003481524.1| ribonucleotide reductase subunit beta [Natrialba magadii ATCC
           43099]
 gi|289532611|gb|ADD06962.1| Ribonucleotide reductase beta subunit-like protein [Natrialba
           magadii ATCC 43099]
          Length = 309

 Score = 52.1 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 87/298 (29%), Gaps = 28/298 (9%)

Query: 36  PLKY---GWAWEKYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
           P+ Y     ++E Y        W P +  +  D   W+     ++ E+         F  
Sbjct: 2   PIDYSNREKSYELYRKGKREGTWDPDDYDLTQDREDWEQF---SEAEQHRFLATCSGFYD 58

Query: 92  SESLVANNIVLAIYRHLSNP---------ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
            E  V   +   +    + P         +   YL +Q +EEA H+  F      +   +
Sbjct: 59  GEEDVTRTLAPYMMALDALPNDELPFDTVQEEMYLAQQVYEEAKHTDLFSRYFEEVFGTQ 118

Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
                            +        L +   +    +      +    +  + E     
Sbjct: 119 NTAPYREGGYQEQGYSTDDLYDTADDLLAAVNSGDRTELVYSLGEAYLNYMGIVEAQLAR 178

Query: 203 TGFAQIL--------SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
            G+             +GR + +    +    + +DE+ H+  G  V+ Q+ I  P +  
Sbjct: 179 GGYLSFDQMIELKATQMGRDSVLESFQQAIGKVRQDETRHIENGRWVMKQLAIAEPDIVA 238

Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY----MQFIANRRCHQIG 308
             ++ +    +    L +  Y  +               QY    + +I   R  Q G
Sbjct: 239 DVYEPRMEEYVENRLLSDPLYDDQPFEGYDPDRIGHQLVQYLQDTIDYIGAERFDQYG 296


>gi|1196947|gb|AAA88620.1| unknown protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 101

 Score = 51.7 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
              + ++ + AN+    +G E LF       NP    +   +  +  +FF    + Y  G
Sbjct: 30  NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAAVSPNADENHDFFSGSGSSYVMG 89

Query: 347 AELK 350
             ++
Sbjct: 90  KTVE 93


>gi|330861132|emb|CBX71395.1| hypothetical protein YEW_EY21270 [Yersinia enterocolitica W22703]
          Length = 90

 Score = 51.3 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 30  DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
           + N++   K    W        N W+P +VP+ +D+  W     LT DE+ +  R     
Sbjct: 14  NWNKIEDDKDLEVWN---RLTANFWLPEKVPLSNDIPSW---AKLTADEQQLTIRVFTGL 67

Query: 90  ASSESLVANNIVLAIYRHLSNP 111
              +++       A+ +    P
Sbjct: 68  TLLDTIQNTLGAPALIKDAITP 89


>gi|47830|emb|CAA36920.1| unnamed protein product [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 101

 Score = 51.3 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
              + ++ + AN+    +G E LF       NP    +   +  +  +FF    + Y  G
Sbjct: 30  NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSPNADENHDFFSGSGSSYVMG 89

Query: 347 AELK 350
             ++
Sbjct: 90  KTVE 93


>gi|299783626|gb|ADJ41624.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum CECT 5716]
          Length = 306

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 66/264 (25%), Gaps = 26/264 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +L   NN W+ T VP+ DD   W     LT  ++  +   L   A   +  +     ++ 
Sbjct: 23  WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
                 +    L    F E+VH+     I   L  +E                       
Sbjct: 80  AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEETTAAYYAWADGQAP--------- 130

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            Q            D        L    V+  G           ++     +    +  +
Sbjct: 131 LQAALXDLTKGIEGDDLMRRGLFLIADTVLCAG--------FDWAVLTQPALAQTNQMLK 182

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I+    +  ++      Q   E P    +    +          L        +     
Sbjct: 183 NILTGNLIFRDYLAYKFRQGIAELPFAKQEALVAQLTKGAQSLIKLAHQQNEVLLEDAGA 242

Query: 286 GLNAPSCEQYMQFIANRRCHQIGL 309
              A     + Q+        +GL
Sbjct: 243 ---ANDLVDF-QWR--MLLVALGL 260


>gi|300710888|ref|YP_003736702.1| Ribonucleotide reductase beta subunit-like protein [Halalkalicoccus
           jeotgali B3]
 gi|299124571|gb|ADJ14910.1| Ribonucleotide reductase beta subunit-like protein [Halalkalicoccus
           jeotgali B3]
          Length = 297

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 74/201 (36%), Gaps = 16/201 (7%)

Query: 53  HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
           HW P E+ +  D    +  + L       ++R L  F + E+ V  ++           E
Sbjct: 28  HWDPAEIDLSVDR---ERLSQLDGATFTDLRRTLALFGAGEAAVTEDLAPLAVVLEGI-E 83

Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL--- 169
            + ++  Q +EEA H+  F     ++     E   + R  P       W  +    L   
Sbjct: 84  DQMFVTTQLYEEAKHADFFDRYWRAVIHPAEEDRGLERTSPLDDR---WFFEAYHDLFER 140

Query: 170 -SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-----LGRANKMVGIAEQ 223
                     +D  +   + L  +++  EG+   TG+  + +     +     + G+ + 
Sbjct: 141 NERAMDRVLKEDTPENRARALCHYHLTIEGVIAQTGYYAVQTSYSGEIPELPLLPGLVDG 200

Query: 224 YQYIMRDESLHLNFGIDVINQ 244
           +  I  DE  H+ FG+  + +
Sbjct: 201 FTEIRGDEGRHVGFGMAKLKE 221


>gi|166367087|ref|YP_001659360.1| ribonucleoside-diphosphate reductase beta chain [Microcystis
          aeruginosa NIES-843]
 gi|166089460|dbj|BAG04168.1| ribonucleoside-diphosphate reductase beta chain [Microcystis
          aeruginosa NIES-843]
          Length = 64

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 7  LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWM 55
          +SPI        ++++ +    + ++ QL  ++Y WA   Y     N W+
Sbjct: 14 ISPIFNPAGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWI 63


>gi|184156149|ref|YP_001844489.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|183227493|dbj|BAG28009.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum IFO 3956]
          Length = 306

 Score = 50.9 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 67/264 (25%), Gaps = 26/264 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +L   NN W+ T VP+ DD   W     LT  ++  +   L   A   +  +     ++ 
Sbjct: 23  WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
                 +    L    F E+VH+     I   L  +E                       
Sbjct: 80  AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEETTAAYYAWADGQAP--------- 130

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            Q   +        D        L    V+  G           ++     +    +  +
Sbjct: 131 LQAALTDLTKGIEGDDLMRRGLFLIADTVLCAG--------FDWAVLTQPALAQTNQMLK 182

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I+    +  ++      Q   E P    +    +          L        +     
Sbjct: 183 NILTGNLIFRDYLAYKFRQGIAELPFAKQEALVAQLTKGAQSLIKLAHQQNEALLEDAGA 242

Query: 286 GLNAPSCEQYMQFIANRRCHQIGL 309
              A     + Q+        +GL
Sbjct: 243 ---ANDLVDF-QWR--MLLVALGL 260


>gi|60416874|emb|CAD71197.1| ribonucleoside-diphosphate reductase small subunit [Bacillus
           subtilis]
          Length = 123

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 21  FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77

Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFN 147
             H+   + +  L   A  E  VH+ ++  I  +L   E   E+F 
Sbjct: 78  AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEKINEVFE 123


>gi|309805905|ref|ZP_07699937.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167681|gb|EFO69828.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
           iners LactinV 03V1-b]
          Length = 145

 Score = 50.6 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 17/154 (11%)

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTL 169
             +      AF  AVH+ ++  I ++L   +   E  N      ++ A+A   + Y    
Sbjct: 1   HEQAIYANFAFMVAVHARSYGTIFSTLCNSDQIDEAHNWVINNEALQARAKALIPYYTGN 60

Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                                V   +  G   Y GF     L   NK+   A+  + I+R
Sbjct: 61  D---------------PLKSKVAAAMMPGFLLYGGFYLPFYLSSRNKLPNTADIIRLILR 105

Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
           D+ +H  +      Q   +       E +     
Sbjct: 106 DKVIHNYYSGYKYQQKLAKLAPQRQAEMKDFVFC 139


>gi|260662380|ref|ZP_05863275.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|260553071|gb|EEX26014.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 306

 Score = 50.2 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 67/264 (25%), Gaps = 26/264 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +L   NN W+ T VP+ DD   W     LT  ++  +   L   A   +  +     ++ 
Sbjct: 23  WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
                 +    L    F E+VH+     I   L  +E                       
Sbjct: 80  AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEETTAAYYAWANGQAP--------- 130

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            Q   +        D        L    V+  G           ++     +    +  +
Sbjct: 131 LQAALTDLTKGIEGDDLMRRGLFLIADTVLCAG--------FDWAVLTQPALAQTNQMLK 182

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I+    +  ++      Q   E P    +    +          L        +     
Sbjct: 183 NILTGNLIFRDYLAYKFRQGIAELPFAKQEALVAQLTKGAQSLIKLAHQQNEALLEDAGA 242

Query: 286 GLNAPSCEQYMQFIANRRCHQIGL 309
              A     + Q+        +GL
Sbjct: 243 ---ANDLVDF-QWR--MLLVALGL 260


>gi|227515316|ref|ZP_03945365.1| ribonucleoside-diphosphate reductase, subunit beta [Lactobacillus
           fermentum ATCC 14931]
 gi|227086330|gb|EEI21642.1| ribonucleoside-diphosphate reductase, subunit beta [Lactobacillus
           fermentum ATCC 14931]
          Length = 306

 Score = 50.2 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 66/264 (25%), Gaps = 26/264 (9%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
           +L   NN W+ T VP+ DD   W     LT  ++  +   L   A   +  +     ++ 
Sbjct: 23  WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
                 +    L    F E+VH+     I   L  +E                       
Sbjct: 80  AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEETTAAYYAWADGQAP--------- 130

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
            Q            D        L    V+  G           ++     +    +  +
Sbjct: 131 LQAALIDLTKGIEGDDLMRRGLFLIADTVLCAG--------FDWAVLTQPALAQTNQMLK 182

Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
            I+    +  ++      Q   E P    +    +          L        +     
Sbjct: 183 NILTGNLIFRDYLAYKFRQGIAELPFAKQEALVAQLTKGAQSLIKLAHQQNEALLEDAGA 242

Query: 286 GLNAPSCEQYMQFIANRRCHQIGL 309
              A     + Q+        +GL
Sbjct: 243 ---ANDLVDF-QWR--MLLVALGL 260


>gi|329575047|gb|EGG56599.1| hypothetical protein HMPREF9520_01787 [Enterococcus faecalis
           TX1467]
          Length = 116

 Score = 50.2 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
             + +     +L+E    E  Y  E      +G      + ++++ AN+    +G++PLF
Sbjct: 8   QDKLKDWMYNLLYELYENEERYTEELYDD--LGWT-EEVKTFLRYNANKALMNLGMDPLF 64

Query: 314 ---KYTENPFPWMSEVIDLKKEKNFFET 338
                  NP   M+ +       +FF  
Sbjct: 65  ADTANDVNPIV-MNGISTGTSNHDFFSQ 91


>gi|242069239|ref|XP_002449896.1| hypothetical protein SORBIDRAFT_05g025245 [Sorghum bicolor]
 gi|241935739|gb|EES08884.1| hypothetical protein SORBIDRAFT_05g025245 [Sorghum bicolor]
          Length = 79

 Score = 49.0 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
           +N     QY+ FIA+     +  + ++    NPF WM E+I L+ +
Sbjct: 32  MNGRLMSQYIGFIADYLLMALEHKKMYDVA-NPFDWM-ELISLQGK 75


>gi|226331041|ref|ZP_03806559.1| hypothetical protein PROPEN_04971 [Proteus penneri ATCC 35198]
 gi|225201836|gb|EEG84190.1| hypothetical protein PROPEN_04971 [Proteus penneri ATCC 35198]
          Length = 86

 Score = 49.0 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
              ++++ + AN+    +G E LF       +P    S   D  +  +FF    + Y  G
Sbjct: 15  EDVKKFLHYNANKALMNLGYEALFPDEITDVSPAILSSLSPDANENHDFFSGSGSSYVIG 74

Query: 347 AEL-----KWD 352
             +      WD
Sbjct: 75  KTINTEDDDWD 85


>gi|289809666|ref|ZP_06540295.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 74

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
               QY+++I N R   +GL+  F+   NP PW++  +
Sbjct: 1   DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 38


>gi|70926559|ref|XP_735800.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56509782|emb|CAH82994.1| hypothetical protein PC300265.00.0 [Plasmodium chabaudi chabaudi]
          Length = 106

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
           +    + + +       A  LE  +  E +    + +     +Q++Q++A+     +   
Sbjct: 1   NHLNNKLKYEVLDYFKTAVDLEYNFCVEMLDFDSLKITKDQVKQFLQYLADTMLVNLKYS 60

Query: 311 PLFKYTENPFPW--MSEVIDLKKEKN 334
             +  ++ PF W   S++I  +  KN
Sbjct: 61  KHYN-SKYPFTWKEFSKIIVSENAKN 85


>gi|209523559|ref|ZP_03272113.1| hypothetical protein AmaxDRAFT_0931 [Arthrospira maxima CS-328]
 gi|209495964|gb|EDZ96265.1| hypothetical protein AmaxDRAFT_0931 [Arthrospira maxima CS-328]
 gi|291570482|dbj|BAI92754.1| ribonucleoside-diphosphate reductase beta chain, fragment
          [Arthrospira platensis NIES-39]
          Length = 70

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 3  NNTGLSPIQAGEKRVNVDDKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55
          N   L+PI   +   +V  + M     +++ QL  ++Y WA   Y     N W+
Sbjct: 16 NKMPLNPIFNPDGNDDVAHRSMWFGETTNLMQLNDVRYSWAVGLYKQMRENFWV 69


>gi|284051982|ref|ZP_06382192.1| ribonucleoside-diphosphate reductase, beta subunit [Arthrospira
          platensis str. Paraca]
          Length = 53

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 7  LSPIQAGEKRVNVDDKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55
          L+PI   +   +V  + M     +++ QL  ++Y WA   Y     N W+
Sbjct: 3  LNPIFNPDGNDDVAHRSMWFGETTNLMQLNDVRYSWAVGLYKQMRENFWV 52


>gi|291570483|dbj|BAI92755.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira
           platensis NIES-39]
          Length = 131

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

Query: 95  LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREV 152
            +    +  I   ++ PE    +  Q  +E +H+ ++QY+I ++   E    +++ +R  
Sbjct: 3   SIQTCNIPYIKNSVTAPEVSLCMAEQISQEGMHNQSYQYMIETIIPSERRNYVYDFWRTD 62

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
             +  +  +     Q            D   E      +   + EGM+FY GF    +L 
Sbjct: 63  KVLRDRCEFIAGLYQQYVD--------DPTPENYFVSLMADYLLEGMYFYNGFIFFYNLA 114

Query: 213 RANKMVGIAEQYQYIMR 229
               M G A+ ++ I R
Sbjct: 115 SRMLMPGSADIFKMINR 131


>gi|289580515|ref|YP_003478981.1| ribonucleoside-diphosphate reductase subunit beta 2 [Natrialba
           magadii ATCC 43099]
 gi|289530068|gb|ADD04419.1| ribonucleoside-diphosphate reductase, beta subunit 2 [Natrialba
           magadii ATCC 43099]
          Length = 310

 Score = 47.1 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 76/213 (35%), Gaps = 9/213 (4%)

Query: 45  KYLSACNNHWMPTEVPMQDDLAL-WKSKNGLTDDERLMIKRNLGFFAS--SESLVANNIV 101
            Y +A   HW P E+ ++ D+           + ++    R L   A   +        +
Sbjct: 20  YYRNAVERHWDPGEIELEQDVENLLAHIEASDEYDQSYWDRTLNGIAKFGAGEDAVTEDL 79

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP-SITAKAN 160
             +   L N + + +L  Q +EEA H+  F      +     +     R  P +     +
Sbjct: 80  APLATVLDNIDDQLFLTTQLYEEAKHADFFDRYWREVIWTVEDELGWERSNPRNDKWFND 139

Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-----LGRAN 215
             ++         +     D  +   +    +++  EG+   TG+  + +          
Sbjct: 140 PYVELFDRNRKAQYRLLEDDTPENRAKAYCHYHLTVEGILAQTGYYGMQTSYGGEFEELP 199

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
            + G+ E +  I  DE  H+ FG++ + ++  E
Sbjct: 200 HLPGLVEGFTKIRSDEGRHVGFGMNQLKKLIAE 232


>gi|289810083|ref|ZP_06540712.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
          enterica subsp. enterica serovar Typhi str. AG3]
          Length = 102

 Score = 45.9 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
          + + +   + M   +  +V +    KY    +      +  W P EV +  D   +++  
Sbjct: 8  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALP 67

Query: 73 G 73
           
Sbjct: 68 E 68


>gi|257388581|ref|YP_003178354.1| ribonucleoside-diphosphate reductase subunit beta 2 [Halomicrobium
           mukohataei DSM 12286]
 gi|257170888|gb|ACV48647.1| ribonucleoside-diphosphate reductase, beta subunit 2 [Halomicrobium
           mukohataei DSM 12286]
          Length = 300

 Score = 45.5 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 80/260 (30%), Gaps = 19/260 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y +A   HW P  + + DD    +            ++  +  F + E  V  ++    
Sbjct: 20  YYRNAVERHWDPAAIDLDDDR---EPLVEAHPATFDHLRSTVAKFGAGERAVTEDLAPLS 76

Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-EGELFNMYREVPSITAKANWAL 163
              L +   + YL  Q +EEA H   F+   T++    E E               +   
Sbjct: 77  V-VLDDAADQAYLSTQLYEEARHLDFFERYWTAVINPVERERDLPVSSPTEDRWVNDAYD 135

Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-----QILSLGRANKMV 218
           +      +        D  +     L  +++  EG+   T +         S      + 
Sbjct: 136 ELLARTDAAMHRLLDDDTPEHRAIALCHYHLTIEGILAQTAYWGLQQSYGPSEPDLPTLP 195

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           G     + I  DE  H+ FG+  + ++  E          Q     + E   L      +
Sbjct: 196 GFTTGLERIRSDEGRHVGFGMSKLRELVAE------GVDPQLLHDTVTELLGLVQQTTTD 249

Query: 279 TMPKGFV---GLNAPSCEQY 295
            +  G     G +A   + Y
Sbjct: 250 GLGDGSEETPGPSADDLQNY 269


>gi|313125821|ref|YP_004036091.1| hypothetical protein Hbor_10540 [Halogeometricum borinquense DSM
           11551]
 gi|312292186|gb|ADQ66646.1| hypothetical protein Hbor_10540 [Halogeometricum borinquense DSM
           11551]
          Length = 297

 Score = 45.5 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 94/275 (34%), Gaps = 22/275 (8%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
           A   +  A   HW P E+ +  D A   + + L       ++  +  F + E  V  ++V
Sbjct: 24  AERYFRHATERHWSPYEIDLAADRA---AISDLGRSAFTQLRATIAMFGAGEENVTEDLV 80

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
                  +  + R ++    +EEA H+  F+     +        +     P+      W
Sbjct: 81  PLAATTTNKTDQR-FVASHIYEEAKHAAFFERYWKDVIRPAE---DARGLDPTDPTADRW 136

Query: 162 ALQYTQTLSS----PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL----GR 213
                + + +            D           +++  EG++  TGF  I +       
Sbjct: 137 FTAAYEEIFNRTETAMNQLLDDDTPTNRANAYCHYHLTVEGVFGQTGFHAIEATFDPETD 196

Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
              + G+ E   ++ +DE  H+ +G++ + ++      +     ++   T+      +  
Sbjct: 197 GPSLPGLVEGISHVRQDEGRHVGYGMNQLAELLQRT-AVERSFVEETVETLAEPVDAVVE 255

Query: 274 AYAHETMPKGFVGLNAPSCEQY-MQFIANRRCHQI 307
                 +P    G ++     + ++   + R  Q+
Sbjct: 256 RMGWRRLP----GPDSDDLTAFAVRKRRD-RLAQL 285


>gi|76803161|ref|YP_331256.1| ribonucleoside-diphosphate reductase, beta subunit 2 [Natronomonas
           pharaonis DSM 2160]
 gi|76559026|emb|CAI50624.1| probable ribonucleoside-diphosphate reductase, beta subunit 2
           [Natronomonas pharaonis DSM 2160]
          Length = 306

 Score = 45.5 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 74/211 (35%), Gaps = 15/211 (7%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK--RNLGFFASSESLVANNIVL 102
            Y +A   HW P ++ +  D    K+    TD     +   R+      +        + 
Sbjct: 20  YYRNAVERHWDPHDIELDTDRENLKAFLDSTDTPETYLDGLRSGVARFGAGEQAVTEDLA 79

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
            +   L + + + ++  Q +EEA H+  F      +      + +     PS      W 
Sbjct: 80  PLATALGSIDDQMFVTTQIYEEAKHTDFFDRYWREVIHP---VEDALGLDPSSPTDETWF 136

Query: 163 LQYTQTLSSPS----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL------SLG 212
               + L   +             ++F +    +++V EG+   TG+  +       S  
Sbjct: 137 NDAYEELFDRNEEAMERLLAAPTAEQFAKAYCHYHLVIEGILAQTGYYGMQQSYSADSYP 196

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
               + G+ + +  I +DE  H+ FG+  + 
Sbjct: 197 ELPHLPGLCDGFTKIRQDEGRHVGFGMAKLK 227


>gi|269861603|ref|XP_002650501.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
 gi|220066034|gb|EED43552.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
           bieneusi H348]
          Length = 53

 Score = 45.5 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
           +  NPF +M E I L+ + NFFE R   YQ+G
Sbjct: 7   HVSNPFDFM-ENISLQGKTNFFERREANYQKG 37


>gi|213855388|ref|ZP_03383628.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
          enterica subsp. enterica serovar Typhi str. M223]
          Length = 108

 Score = 45.2 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
          + + +   + M   +  +V +    KY    +      +  W P EV +  D   ++   
Sbjct: 8  QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64

Query: 73 GLTDDER 79
           L + E+
Sbjct: 65 ALPEHEK 71


>gi|145637995|ref|ZP_01793631.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittHH]
 gi|145268805|gb|EDK08772.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
           influenzae PittHH]
          Length = 115

 Score = 45.2 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLE 272
           M G A+  ++I RDE+LHL     ++N +             +E +Q++  +   A   E
Sbjct: 1   MEGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQE 60

Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIA 300
            A+A      G  +GLN     QY+++I 
Sbjct: 61  KAWADYLFKDGSMIGLNRDILVQYVEYIT 89


>gi|60416888|emb|CAD71206.1| ribonucleoside-diphospate reductase small subunit [Bacillus
           subtilis]
          Length = 98

 Score = 44.8 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 45  KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
            Y       W+P E+ +  DL  WK    L  +E+    + L      ++   N  +  +
Sbjct: 26  FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 82

Query: 105 YRHLSNPECRQYLLRQ 120
             H+   + +  L   
Sbjct: 83  AEHVDGHQRKAVLNFM 98


>gi|213028365|ref|ZP_03342812.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
          enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 73

 Score = 44.4 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93 ESLVA 97
          +++  
Sbjct: 67 DTIQN 71


>gi|213420353|ref|ZP_03353419.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 150

 Score = 44.0 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 18/143 (12%)

Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS------ 171
              AF E +HS ++ +II ++  D   +F+       I  +A     Y   L        
Sbjct: 1   ETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWH 60

Query: 172 -----------PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
                       +     ++  ++    L     + E + FY  FA   +      M G 
Sbjct: 61  LLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGN 119

Query: 221 AEQYQYIMRDESLHLNFGIDVIN 243
           A+  + I RDE+LHL     ++N
Sbjct: 120 AKIIRLIARDEALHLTGTQHMLN 142


>gi|145638051|ref|ZP_01793677.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
          influenzae PittHH]
 gi|145268754|gb|EDK08731.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
          influenzae PittHH]
          Length = 73

 Score = 43.6 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
          + + +   + M      +V +    KY    +      +  W P EV +  D   +    
Sbjct: 8  QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64

Query: 73 GLTDDERLM 81
           L + E+ +
Sbjct: 65 ALPEHEKHI 73


>gi|213621399|ref|ZP_03374182.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
          enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 70

 Score = 43.6 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
              ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66

Query: 93 ESLV 96
          +++ 
Sbjct: 67 DTIQ 70


>gi|328710829|ref|XP_003244373.1| PREDICTED: hypothetical protein LOC100575936 [Acyrthosiphon pisum]
          Length = 66

 Score = 42.9 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR--VTEY 343
           Y+   A+R   ++G +       +PF    E+   + + NFFE R   T Y
Sbjct: 10  YIGDFADRLLKELGFQQFTGRQTHPF---MELTPQQGKTNFFERRLSNTNY 57


>gi|14602365|ref|NP_148912.1| ORF128 RR2A [Cydia pomonella granulovirus]
 gi|14591883|gb|AAK70788.1|U53466_128 ORF128 RR2A [Cydia pomonella granulovirus]
          Length = 362

 Score = 42.9 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 65/216 (30%), Gaps = 13/216 (6%)

Query: 29  SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
            +  ++ P  Y  +W   +    NHW   E      +      + +    +  + ++   
Sbjct: 33  DNRLKIWPPTYTPSWNYLVEHQINHWYANE---HKPMDDLNGFDKIDSAWQNALLQSFAV 89

Query: 89  FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
            A  +  V + I  +      +   +     QA  E  H   +  ++    +      N 
Sbjct: 90  LAIGDDKVMDLISNSDIEWEES--TKWMFADQAARETTHKIVYNRMLELACVSRSYTVNT 147

Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
                      +++           F    ++   + +  L    +  E   F   F  I
Sbjct: 148 LTS-------GDFSHYIMDCRVLDEFQLPERNEVNDKVLFLSTMILC-ERYLFAAPFLII 199

Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
             +G +  +    +    +M+DE +H    + ++  
Sbjct: 200 NLMGESGFINKCVKINMQVMKDEHVHYKHAVQLLMD 235


>gi|309806472|ref|ZP_07700477.1| hypothetical protein HMPREF9212_1388 [Lactobacillus iners LactinV
          03V1-b]
 gi|308167145|gb|EFO69319.1| hypothetical protein HMPREF9212_1388 [Lactobacillus iners LactinV
          03V1-b]
          Length = 103

 Score = 42.1 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
          + N++   K    W        N W+P ++P+ +DL  W S   L+ D + +I R     
Sbjct: 28 NWNKIDDDKDLEVWN---RVTQNFWLPEKIPVSNDLPSWNS---LSKDWQQLITRTFTGL 81

Query: 90 ASSESLVA 97
             +++ A
Sbjct: 82 TLLDTIQA 89


>gi|223954268|gb|ACN30264.1| UL40 [Anatid herpesvirus 1]
          Length = 46

 Score = 41.7 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 9/49 (18%)

Query: 307 IGLEPLFKYT----ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
           IGL PLF       + P  +M+      ++ NFFE R T Y  G+ L  
Sbjct: 2   IGLAPLFDEPPPKHDFPLAFMA----TSQQTNFFERRNTTYA-GSVLND 45


>gi|328480210|gb|EGF49138.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 101

 Score = 41.3 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
                ++++ AN+    +G E  F  T    NP   M+ +       +FF      Y+ G
Sbjct: 22  DEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MNGISTSTANHDFFSQVGNGYRLG 80

Query: 347 A--ELKWD 352
               ++ D
Sbjct: 81  QVEAMEDD 88


>gi|195391948|ref|XP_002054621.1| GJ22707 [Drosophila virilis]
 gi|194152707|gb|EDW68141.1| GJ22707 [Drosophila virilis]
          Length = 857

 Score = 40.9 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76
            P K+  +W  Y       W+P  +VP  DD+   +    L+D
Sbjct: 732 FPFKHPDSWRAYPYHWA--WLPQAKVPFSDDIKD-QVLPQLSD 771


>gi|195062926|ref|XP_001996279.1| GH22280 [Drosophila grimshawi]
 gi|193899774|gb|EDV98640.1| GH22280 [Drosophila grimshawi]
          Length = 756

 Score = 40.9 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76
            P K+  +W  Y       W+P  +VP  DD+   +    L+D
Sbjct: 631 FPFKHPDSWRAYPYHWA--WLPQAKVPFSDDIKD-QVLPQLSD 670


>gi|209523560|ref|ZP_03272114.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima
           CS-328]
 gi|209495965|gb|EDZ96266.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima
           CS-328]
          Length = 107

 Score = 40.5 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSF 174
           +  Q  +E +H+ ++QY+I ++   E    +++ +R    +  +  +     Q       
Sbjct: 1   MAEQISQEGMHNQSYQYMIETIIPSERRNYVYDFWRTDKVLRDRCEFIAGLYQEYVD--- 57

Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
                D   E      +   + EGM+FY GF    +L     M G A+ ++ I R
Sbjct: 58  -----DPTPENYFVSLMADYLLEGMYFYNGFIFFYNLASRMLMPGSADIFKMINR 107


>gi|195451115|ref|XP_002072774.1| GK13780 [Drosophila willistoni]
 gi|194168859|gb|EDW83760.1| GK13780 [Drosophila willistoni]
          Length = 838

 Score = 40.5 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76
            P K+  +W  Y       W+P  +VP  +D+        L+D
Sbjct: 713 FPFKHPDSWRAYPYHWA--WLPQAKVPFSEDIKD-HVLPQLSD 752


>gi|157105736|ref|XP_001649004.1| phosphatidylinositol 4-kinase type-ii [Aedes aegypti]
 gi|108880035|gb|EAT44260.1| phosphatidylinositol 4-kinase type-ii [Aedes aegypti]
          Length = 556

 Score = 39.8 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 3/34 (8%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLAL 67
            P K+  +W  Y       W+P  ++P   D+  
Sbjct: 428 FPFKHPDSWRAYPYHWA--WLPQAKIPFSQDIKD 459


>gi|328480213|gb|EGF49140.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 87

 Score = 39.8 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 29/69 (42%)

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
            V  E   FY+GF   L     NK+  +AE  + I+RDES+H  +          E P  
Sbjct: 19  SVFLETFLFYSGFFTPLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEA 78

Query: 253 WTKEFQQKS 261
             ++ Q   
Sbjct: 79  EQQQLQDWM 87


>gi|74419026|gb|ABA03240.1| ribonucleoside diphosphate reductase small subunit
          [Enterobacteria phage RB2]
          Length = 69

 Score = 39.4 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 7  LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
          +S +      V+V ++ M            +   ++    E      +  W P EV +  
Sbjct: 1  MSTVFN-TNPVDVLNEPMFFGSGLGLARYDIQ--RHRVFEELIERQISFFWRPEEVNLMM 57

Query: 64 DLALWKSKNG 73
          D A +     
Sbjct: 58 DAAQFNKLPQ 67


>gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040830|gb|ACT57626.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 30

 Score = 39.0 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query: 1  MANNTGLSPIQAGEKRVNVDDKRML 25
          MANNTGLSPIQAGEKRVNVDDKR+L
Sbjct: 1  MANNTGLSPIQAGEKRVNVDDKRIL 25


>gi|260174332|ref|ZP_05760744.1| hypothetical protein BacD2_20921 [Bacteroides sp. D2]
          Length = 153

 Score = 39.0 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
            F   +             K F+  +  +  E   ++  +     P    G +      Y
Sbjct: 69  EFLNHLYMATCQGCRKEKCKLFKTCNVRVCSEEKQVDYCFQCSHFPCENTGFDEHL---Y 125

Query: 296 MQFIA-NRRCHQIGLEPLFKYTEN 318
            +F+A NRR  +IG+E  ++  ++
Sbjct: 126 KRFVAINRRMQEIGIEKYYEEVKD 149


>gi|315922600|ref|ZP_07918840.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696475|gb|EFS33310.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 150

 Score = 38.6 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
            F   +             K F+  +  +  E   ++  +     P    G +      Y
Sbjct: 66  EFLNHLYMATCQGCRKEKCKLFKTCNVRVCSEEKQVDYCFQCSHFPCENTGFDEHL---Y 122

Query: 296 MQFIA-NRRCHQIGLEPLFKYTEN 318
            +F+A NRR  +IG+E  ++  ++
Sbjct: 123 KRFVAINRRMQEIGIEKYYEEVKD 146


>gi|194767627|ref|XP_001965916.1| GF11648 [Drosophila ananassae]
 gi|190619759|gb|EDV35283.1| GF11648 [Drosophila ananassae]
          Length = 678

 Score = 37.8 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 3/33 (9%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLA 66
            P K+  +W  Y       W+P  ++P  +D+ 
Sbjct: 553 FPFKHPDSWRAYPYHWA--WLPQAKIPFSEDIK 583


>gi|158286272|ref|XP_308652.4| AGAP007105-PA [Anopheles gambiae str. PEST]
 gi|157020389|gb|EAA04005.4| AGAP007105-PA [Anopheles gambiae str. PEST]
          Length = 894

 Score = 37.8 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
           +  A  +      + +      L+     QY++   +    Q+G+       +NP 
Sbjct: 755 VENAEYIAEMLVSDVLVTSVGKLSMKMLYQYIRKNFDWILQQLGVS---DVEQNPL 807


>gi|289804144|ref|ZP_06534773.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 130

 Score = 37.8 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           T T++  +     ++  ++    L     + E + FY  FA   +      M G A+  +
Sbjct: 15  THTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIR 73

Query: 226 YIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
            I RDE+LHL     ++N  +  +++P +    +E +Q+   +  +A   E 
Sbjct: 74  LIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEK 125


>gi|330971158|gb|EGH71224.1| hypothetical protein PSYAR_11719 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 25

 Score = 37.5 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/21 (80%), Positives = 19/21 (90%)

Query: 317 ENPFPWMSEVIDLKKEKNFFE 337
            NPFPWMSE+I LKKE+NFFE
Sbjct: 1   TNPFPWMSEIIALKKERNFFE 21


>gi|74419030|gb|ABA03243.1| ribonucleoside diphosphate reductase small subunit
          [Enterobacteria phage RB15]
          Length = 69

 Score = 37.5 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 7  LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
          +S +      VN+  + M            +   ++    E    + +  W P EV +  
Sbjct: 1  MSTVFN-TSPVNILTEPMFFGSGLGLARYDIQ--RHRVFEELIEKSLSFFWRPEEVNLMM 57

Query: 64 DLALWKSKNG 73
          D A +     
Sbjct: 58 DAAQFNKLPQ 67


>gi|213855387|ref|ZP_03383627.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
          Length = 160

 Score = 37.1 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
           T T++  +     ++  ++    L     + E + FY  FA   +      M G A+  +
Sbjct: 39  THTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIR 97

Query: 226 YIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
            I RDE+LHL     ++N  +  +++P +    +E +Q+   +  +A   E 
Sbjct: 98  LIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEK 149


>gi|186684872|ref|YP_001868068.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467324|gb|ACC83125.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 1102

 Score = 37.1 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 16  RVNVDDKRMLNA--RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
           R  VD + +      SD  QL P +    W +   A    W   E+ +  D+
Sbjct: 357 RNEVDTETLWAGQYDSDQRQLYPRRSFEVWRESKKAQAQKWTVEEIELARDI 408


>gi|404605|gb|AAD10549.1| uncertain [Mycoplasma genitalium]
          Length = 107

 Score = 37.1 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 6/92 (6%)

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +     +++    LE  Y  E       G+   + + +  + A +    +G +  F   E
Sbjct: 7   ESICFELMYRLIELEKDYLKELYEG--FGIVDDAIK-FSVYNAGKFLQNLGYDSPFTAAE 63

Query: 318 NPFP---WMSEVIDLKKEKNFFETRVTEYQQG 346
                  +        +  +FF    + Y  G
Sbjct: 64  TRIKPEIFAQLSARADENHDFFSGNGSSYVMG 95


>gi|52550536|gb|AAU84385.1| transposase [uncultured archaeon GZfos9E5]
          Length = 398

 Score = 36.7 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 8/78 (10%)

Query: 10  IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAW--------EKYLSACNNHWMPTEVPM 61
           I+ G + + +  + +   R+    L  L              E Y  A    W   +V +
Sbjct: 81  IENGTEVLRLRKRGVPAPRTVRYHLEKLVIDDILSQFNGISEELYRIAKKQRWFVNKVDL 140

Query: 62  QDDLALWKSKNGLTDDER 79
             D+  W     + D+  
Sbjct: 141 SIDIHDWMYYGDIDDEMV 158


>gi|170061542|ref|XP_001866278.1| phosphatidylinositol 4-kinase type-ii [Culex quinquefasciatus]
 gi|167879742|gb|EDS43125.1| phosphatidylinositol 4-kinase type-ii [Culex quinquefasciatus]
          Length = 501

 Score = 36.7 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 18/73 (24%)

Query: 11  QAGEKRVNVDDKRMLNARSDVN--QL-------------LPLKYGWAWEKYLSACNNHWM 55
                    + +  +   +D N  QL              P K+  +W  Y       W+
Sbjct: 360 STPSGMPRSNSRLEMAENTDWNLVQLPEIKIAAIDNGLAFPFKHPDSWRAYPYHWA--WL 417

Query: 56  PT-EVPMQDDLAL 67
           P  + P   D+  
Sbjct: 418 PQAKNPFSQDIKD 430


>gi|193688328|ref|XP_001947555.1| PREDICTED: phosphatidylinositol 4-kinase type 2-beta-like
           [Acyrthosiphon pisum]
          Length = 454

 Score = 36.3 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 11/58 (18%)

Query: 35  LPLKYGWAWEKYLSACNNHWMPT-EVPMQDD--------LALWKSKNGLTDDERLMIK 83
            P K+  +W  Y       W+P  ++P   D        L+       L DD   + K
Sbjct: 320 FPFKHPDSWRAYPYHWA--WLPQAKIPFSKDTKELVLPYLSDMNFVQDLCDDLYTLFK 375


>gi|328713560|ref|XP_003245116.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like
           [Acyrthosiphon pisum]
          Length = 62

 Score = 35.9 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
           ++  A+    + G         +PF  M E+   + + NFFE R
Sbjct: 11  IEDFADGLLKESGFLQFTGRQTHPF--M-ELTSQQGKTNFFERR 51


>gi|15211865|emb|CAC51101.1| ribonucleotide reductase small subunit [Bacillus sp. M1918]
          Length = 86

 Score = 35.9 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%)

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
           K  D   L    V  V  E   FY+GF   L      K++   E    I+RDE++H  + 
Sbjct: 19  KKNDDISLFKGMVASVFLESFLFYSGFYYPLYFYGQGKLMQSGEIVNLIIRDEAIHGVYV 78

Query: 239 IDVINQIK 246
             +  ++ 
Sbjct: 79  GLLAQEVY 86


>gi|15211879|emb|CAC51109.1| ribonucleotide reductase small subunit [Bacillus sp. BSG40]
          Length = 86

 Score = 35.9 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%)

Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
           +  D   L    V  V  E   FY+GF   L      K++   E    I+RDE++H  + 
Sbjct: 19  EKNDDISLFKAMVASVFLESFLFYSGFYYPLYFYGQGKLMQSGEIVNLIIRDEAIHGVYV 78

Query: 239 IDVINQIK 246
             +  +I 
Sbjct: 79  GLLAQEIY 86


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.124    0.357 

Lambda     K      H
   0.267   0.0379    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,429,986,633
Number of Sequences: 14124377
Number of extensions: 121483334
Number of successful extensions: 269427
Number of sequences better than 10.0: 2766
Number of HSP's better than 10.0 without gapping: 2591
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 259062
Number of HSP's gapped (non-prelim): 2843
length of query: 352
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 212
effective length of database: 2,865,380,850
effective search space: 607460740200
effective search space used: 607460740200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 81 (35.9 bits)