HHsearch alignment for GI: 254780846 and conserved domain: COG0196

>COG0196 RibF FAD synthase [Coenzyme metabolism].
Probab=100.00  E-value=0  Score=655.56  Aligned_cols=302  Identities=41%  Similarity=0.758  Sum_probs=285.9

Q ss_pred             CEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHCCCCCCCCCCHHHHH
Q ss_conf             9422488521127610188499993156502899999999999502--79779998379868984788866200007899
Q gi|254780846|r    1 MHVFHNIEINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIAN--NSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQ   78 (324)
Q Consensus         1 Mki~~~~~~~~~~p~~~~~~vvtiG~FDGvH~GHq~Li~~~~~~a~--~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k   78 (324)
T Consensus         1 m~~~~~~---~~~~~~~~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k   77 (304)
T COG0196           1 MKIIRGT---HNIPEDLRGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREK   77 (304)
T ss_pred             CCEEECC---CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCCCCCCCHHHH
T ss_conf             9368635---6787445785899974776156699999999999987289669999369978870877772003798999


Q ss_pred             HHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHH
Q ss_conf             99885113100022564057752283026888621427802999834553033775560246775101264167615223
Q gi|254780846|r   79 EKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELR  158 (324)
Q Consensus        79 ~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~  158 (324)
T Consensus        78 ~~~l~~~gvd~~~v~~F~~~fa~ls~~~Fv~-~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~-gf~v~~v~~~~  155 (304)
T COG0196          78 IRLLAGYGVDALVVLDFDLEFANLSAEEFVE-LLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQK-GFEVTIVPKIN  155 (304)
T ss_pred             HHHHHHCCCCEEEEEECCHHHHHCCHHHHHH-HHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCC-CCEEEEECCEE
T ss_conf             9999866996899996786576399789999-998445872899933641688888989999973557-85399945472


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEEEEEHHCCCCCCHHHHEEEEEEEECCCC
Q ss_conf             02333023036899987258999998500000000012210020110111112110000222310110002476305656
Q gi|254780846|r  159 NNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSY  238 (324)
Q Consensus       159 ~~~~~~ISSt~IR~~l~~Gdi~~an~lLGr~y~i~G~Vv~G~~~Gr~lGfPTaNi~~~~~~~p~~GVY~~~v~~~~~~~~  238 (324)
T Consensus       156 ~-~~~~iSSt~IR~~L~~gdl~~A~~lLG~py~i~G~Vv~G~~~Gr~lGfPTaNi~~~~~~~~~~GVYav~v~~~~~~-~  233 (304)
T COG0196         156 E-EGIRISSTAIRQALREGDLEEANKLLGRPYSIEGKVVHGQKLGRTLGFPTANIYLKDNVLPAFGVYAVRVKLDGGV-Y  233 (304)
T ss_pred             C-CCCEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-C
T ss_conf             2-7957825999998764898899986199858998997253035604877316566665155770699999978864-2


Q ss_pred             CHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             211057899726779714999994067855189889999460000887468989999999997999999987
Q gi|254780846|r  239 SGVANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILE  310 (324)
Q Consensus       239 ~~v~niG~~PT~~~~~~~~iE~hildf~~dlYg~~i~v~f~~~iR~e~kF~s~~~L~~qI~~D~~~a~~~l~  310 (324)
T Consensus       234 ~gv~~vG~rpt~~~~-~~~lEvhi~Df~~dlYG~~i~v~~~~~iR~e~kF~s~d~L~~qi~~D~~~Ar~~~~  304 (304)
T COG0196         234 PGVANVGYRPTVDGS-ERSLEVHILDFNGDLYGERVKVRFLKFIRDEKKFDSLDELKEQIEKDIERARKLLA  304 (304)
T ss_pred             CCEEEECCCCCCCCC-EEEEEEEEECCCCCCCCCEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             116885216501687-06899997325642367369999864225566788899999999999999999749