Query gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 324
No_of_seqs 148 out of 2493
Neff 6.2
Searched_HMMs 39220
Date Mon May 30 03:10:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780846.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05627 bifunctional riboflav 100.0 0 0 731.4 23.6 293 16-311 9-303 (303)
2 COG0196 RibF FAD synthase [Coe 100.0 0 0 655.6 23.0 302 1-310 1-304 (304)
3 TIGR00083 ribF riboflavin bios 100.0 0 0 642.8 17.7 288 21-310 1-296 (296)
4 PRK07143 hypothetical protein; 100.0 0 0 569.6 20.9 274 1-312 3-276 (277)
5 cd02064 Flavokinase_C Riboflav 100.0 0 0 393.4 13.7 177 21-199 1-179 (179)
6 pfam06574 FAD_syn FAD syntheta 100.0 0 0 335.3 13.4 156 13-169 1-158 (158)
7 pfam01687 Flavokinase Riboflav 100.0 2.8E-45 0 315.2 7.3 124 185-310 1-125 (125)
8 KOG3110 consensus 99.9 4.2E-25 1.1E-29 184.1 6.6 133 185-318 8-146 (153)
9 cd02039 cytidylyltransferase_l 99.9 8.3E-24 2.1E-28 175.7 8.8 140 21-173 1-141 (141)
10 cd02156 nt_trans nt_trans (nuc 99.4 1.7E-12 4.3E-17 102.1 11.0 142 21-169 1-147 (147)
11 cd02172 RfaE_N RfaE is a prote 99.1 8.8E-10 2.3E-14 84.4 11.0 135 18-176 4-140 (143)
12 cd02171 G3P_Cytidylyltransfera 99.0 2.3E-09 5.8E-14 81.8 9.4 125 20-176 3-128 (129)
13 cd02170 cytidylyltransferase T 99.0 2.4E-09 6.1E-14 81.6 9.0 132 20-176 3-135 (136)
14 PRK00777 phosphopantetheine ad 98.9 2.2E-09 5.5E-14 81.9 6.2 132 20-174 6-145 (155)
15 PRK01170 phosphopantetheine ad 98.9 1.6E-09 4.1E-14 82.8 3.5 247 22-307 4-273 (328)
16 cd00560 PanC PanC Pantoate-be 98.8 1.4E-08 3.6E-13 76.6 6.8 169 1-185 1-202 (276)
17 pfam02569 Pantoate_ligase Pant 98.8 2.1E-08 5.5E-13 75.4 7.3 168 1-185 1-203 (280)
18 cd02174 CCT CTP:phosphocholine 98.8 2.9E-07 7.3E-12 68.1 12.2 132 21-177 5-138 (150)
19 cd02164 PPAT_CoAS The PPAT dom 98.7 1.2E-08 2.9E-13 77.2 4.0 135 23-172 3-141 (142)
20 TIGR01518 g3p_cytidyltrns glyc 98.6 6.4E-08 1.6E-12 72.3 6.1 124 21-173 1-125 (126)
21 COG0615 TagD Cytidylyltransfer 98.6 6.5E-07 1.7E-11 65.8 9.6 133 21-175 4-138 (140)
22 PRK00380 panC pantoate--beta-a 98.6 1.9E-07 4.8E-12 69.3 6.9 150 20-185 25-203 (283)
23 cd02167 NMNAT_NadR The NMNAT d 98.6 4.1E-07 1.1E-11 67.1 8.2 132 22-174 2-145 (157)
24 cd02163 PPAT_a Phosphopantethe 98.5 4.1E-07 1E-11 67.1 6.8 130 22-180 2-139 (152)
25 pfam08218 Citrate_ly_lig Citra 98.5 7.1E-07 1.8E-11 65.6 7.7 146 26-187 7-175 (182)
26 cd02165 NMNAT This family cont 98.5 2.7E-06 6.8E-11 61.8 10.2 143 22-177 2-173 (194)
27 cd02158 PanC_ATPS PanC_ATPS 98.4 6.7E-07 1.7E-11 65.7 5.9 142 19-171 15-183 (183)
28 PRK00071 nadD nicotinic acid m 98.4 1.9E-06 4.9E-11 62.7 8.1 141 24-178 8-178 (200)
29 TIGR02199 rfaE_dom_II rfaE bif 98.4 1.5E-06 3.8E-11 63.4 7.5 130 17-174 10-142 (144)
30 COG1019 Predicted nucleotidylt 98.4 9.2E-07 2.3E-11 64.8 6.4 134 21-173 7-145 (158)
31 PRK01153 nicotinamide-nucleoti 98.4 4E-06 1E-10 60.6 9.6 132 21-178 3-140 (170)
32 cd02166 NMNAT_Archaea This fam 98.4 4.5E-06 1.1E-10 60.3 9.7 132 21-178 2-139 (163)
33 PRK11316 bifunctional heptose 98.4 2.8E-06 7.1E-11 61.7 8.4 129 20-176 342-473 (473)
34 PRK08887 nicotinic acid mononu 98.3 2.8E-06 7.2E-11 61.7 8.1 134 22-178 6-150 (173)
35 cd02173 ECT CTP:phosphoethanol 98.3 9.4E-06 2.4E-10 58.2 10.3 139 20-181 4-144 (152)
36 PRK13477 bifunctional pantoate 98.3 1.3E-06 3.4E-11 63.8 5.0 156 1-170 1-190 (512)
37 PRK00168 coaD phosphopantethei 98.3 4E-06 1E-10 60.6 7.3 129 21-178 4-139 (159)
38 smart00764 Citrate_ly_lig Citr 98.2 6.5E-06 1.6E-10 59.3 7.4 146 26-187 7-175 (182)
39 PRK08099 nicotinamide-nucleoti 98.2 1.4E-05 3.6E-10 57.1 8.8 169 13-199 59-238 (411)
40 TIGR00018 panC pantoate--beta- 98.2 1.6E-06 4E-11 63.3 3.8 176 21-204 30-235 (310)
41 pfam01467 CTP_transf_2 Cytidyl 98.1 2.1E-05 5.4E-10 55.9 8.9 131 24-172 3-147 (148)
42 cd02169 Citrate_lyase_ligase C 98.1 2E-05 5.2E-10 56.1 7.6 148 24-187 119-289 (296)
43 COG0414 PanC Panthothenate syn 98.0 2.5E-06 6.3E-11 62.0 2.5 160 1-170 1-191 (285)
44 COG1057 NadD Nicotinic acid mo 98.0 2.8E-05 7.2E-10 55.1 7.4 145 21-177 6-174 (197)
45 COG0669 CoaD Phosphopantethein 98.0 2.8E-05 7.1E-10 55.2 7.2 132 20-180 4-143 (159)
46 TIGR01510 coaD_prev_kdtB pante 97.9 9.9E-06 2.5E-10 58.1 3.3 128 21-175 2-139 (163)
47 TIGR01526 nadR_NMN_Atrans nico 97.7 0.00015 3.9E-09 50.4 7.3 138 22-172 5-157 (346)
48 PTZ00308 ethanolamine-phosphat 97.7 0.00044 1.1E-08 47.4 9.6 124 21-171 14-139 (353)
49 COG2046 MET3 ATP sulfurylase ( 97.7 0.00068 1.7E-08 46.2 10.5 148 17-179 182-359 (397)
50 PRK07152 nadD putative nicotin 97.6 0.00056 1.4E-08 46.7 8.2 254 24-309 7-334 (343)
51 COG2870 RfaE ADP-heptose synth 97.5 0.00056 1.4E-08 46.7 7.4 130 20-177 334-466 (467)
52 PRK13964 coaD phosphopantethei 97.5 0.00027 6.9E-09 48.8 5.8 126 21-175 4-137 (140)
53 PRK13671 hypothetical protein; 97.4 0.00088 2.3E-08 45.4 7.2 106 24-146 6-115 (298)
54 pfam05636 DUF795 Protein of un 97.4 0.00095 2.4E-08 45.2 7.3 105 23-144 6-114 (389)
55 PRK13670 hypothetical protein; 97.3 0.001 2.6E-08 45.0 7.2 105 24-145 7-115 (390)
56 COG1323 Predicted nucleotidylt 97.3 0.00086 2.2E-08 45.5 6.5 154 23-196 6-175 (358)
57 COG3053 CitC Citrate lyase syn 97.1 0.0031 7.9E-08 41.9 7.7 148 24-187 151-326 (352)
58 pfam01747 ATP-sulfurylase ATP- 97.1 0.01 2.5E-07 38.6 10.3 147 19-179 117-292 (310)
59 PTZ00308 ethanolamine-phosphat 97.1 0.014 3.5E-07 37.7 10.9 138 19-180 193-333 (353)
60 KOG3042 consensus 96.9 0.00032 8E-09 48.3 1.4 147 19-171 27-195 (283)
61 PRK05379 bifunctional nicotina 96.9 0.015 3.9E-07 37.4 10.0 132 20-175 7-147 (340)
62 cd00517 ATPS ATP-sulfurylase ( 96.9 0.014 3.7E-07 37.5 9.8 151 20-179 158-339 (356)
63 cd02168 NMNAT_Nudix This domai 96.9 0.0046 1.2E-07 40.7 7.3 133 22-178 2-143 (179)
64 TIGR00125 cyt_tran_rel cytidyl 96.8 0.0022 5.6E-08 42.9 5.0 56 21-85 2-57 (63)
65 KOG3351 consensus 96.7 0.0041 1.1E-07 41.1 5.5 138 20-176 143-286 (293)
66 COG1056 NadR Nicotinamide mono 96.6 0.012 3.1E-07 38.0 7.5 160 21-204 6-167 (172)
67 PRK13793 nicotinamide-nucleoti 96.6 0.011 2.8E-07 38.3 7.0 136 20-179 6-150 (188)
68 PRK04149 sat sulfate adenylylt 96.6 0.046 1.2E-06 34.2 10.2 162 19-193 186-383 (390)
69 TIGR00482 TIGR00482 nicotinate 95.8 0.019 4.8E-07 36.8 5.1 100 24-127 3-118 (229)
70 KOG2803 consensus 95.3 0.23 5.9E-06 29.7 9.1 109 21-145 11-120 (358)
71 KOG2803 consensus 95.2 0.067 1.7E-06 33.2 6.2 139 17-183 197-339 (358)
72 PRK05537 bifunctional sulfate 94.4 0.49 1.2E-05 27.6 9.5 148 19-178 187-366 (568)
73 TIGR01527 arch_NMN_Atrans nico 93.7 0.097 2.5E-06 32.1 4.1 134 23-178 4-142 (171)
74 KOG2804 consensus 92.4 0.88 2.2E-05 25.9 7.3 147 21-193 66-215 (348)
75 KOG3199 consensus 76.9 6.6 0.00017 20.2 9.7 44 20-63 10-56 (234)
76 TIGR02407 ectoine_ectB diamino 74.4 6.3 0.00016 20.3 4.5 115 37-164 111-243 (413)
77 PRK01506 consensus 68.3 10 0.00027 18.9 4.9 140 8-156 45-198 (317)
78 PRK01999 consensus 64.5 12 0.00032 18.4 7.8 147 4-159 37-196 (311)
79 PRK06973 nicotinic acid mononu 63.1 3.4 8.6E-05 22.1 1.1 105 59-178 49-166 (196)
80 TIGR00863 P2X cation transport 58.3 2.4 6.2E-05 23.0 -0.3 69 86-155 259-328 (377)
81 PRK01259 ribose-phosphate pyro 57.9 16 0.00041 17.7 5.6 139 8-158 36-191 (309)
82 cd02020 CMPK Cytidine monophos 55.0 12 0.00031 18.5 2.8 77 130-215 6-87 (147)
83 pfam02906 Fe_hyd_lg_C Iron onl 54.9 18 0.00046 17.4 4.2 65 47-111 10-75 (286)
84 COG0066 LeuD 3-isopropylmalate 54.2 11 0.00029 18.7 2.5 60 105-177 51-110 (191)
85 PRK02812 ribose-phosphate pyro 53.3 19 0.00049 17.2 6.2 142 8-158 57-213 (331)
86 PRK00238 consensus 53.1 9.8 0.00025 19.1 2.1 55 73-127 8-73 (198)
87 cd00802 class_I_aaRS_core Clas 52.9 19 0.00049 17.2 4.5 128 30-168 13-142 (142)
88 KOG0229 consensus 52.3 16 0.00041 17.7 3.1 161 98-306 99-279 (420)
89 TIGR00396 leuS_bact leucyl-tRN 51.4 11 0.00028 18.8 2.2 191 28-248 45-275 (916)
90 TIGR02837 spore_II_R stage II 49.5 9.8 0.00025 19.1 1.6 68 166-243 85-157 (172)
91 TIGR00642 mmCoA_mut_beta methy 48.3 6.5 0.00017 20.2 0.6 119 71-196 325-456 (642)
92 PRK02615 thiamine-phosphate py 47.6 23 0.0006 16.6 4.1 15 139-153 190-204 (345)
93 PRK04117 consensus 47.3 24 0.0006 16.6 5.8 141 8-159 39-195 (309)
94 PRK01641 leuD isopropylmalate 47.2 14 0.00037 18.0 2.2 47 106-157 57-103 (201)
95 cd05802 GlmM GlmM is a bacteri 45.0 25 0.00063 16.5 3.1 32 120-155 169-200 (434)
96 PRK07199 phosphoribosylpyropho 44.9 26 0.00066 16.4 8.9 137 9-156 39-191 (301)
97 TIGR01126 pdi_dom protein disu 44.4 6.4 0.00016 20.3 0.0 34 174-220 50-85 (107)
98 PRK00032 Maf-like protein; Rev 42.6 13 0.00033 18.3 1.4 39 73-111 8-48 (189)
99 PRK04222 consensus 42.4 19 0.00048 17.3 2.2 37 75-111 11-49 (191)
100 pfam00113 Enolase_C Enolase, C 41.5 29 0.00074 16.0 7.1 109 34-154 82-206 (296)
101 PRK02083 imidazole glycerol ph 41.5 21 0.00054 16.9 2.3 53 72-131 83-135 (253)
102 PRK01659 consensus 41.5 18 0.00047 17.3 2.0 52 72-130 83-134 (252)
103 PRK00648 Maf-like protein; Rev 41.4 20 0.0005 17.1 2.2 39 73-111 9-50 (191)
104 cd03088 ManB ManB is a bacteri 40.8 28 0.00072 16.1 2.9 14 21-35 38-51 (459)
105 PRK00884 Maf-like protein; Rev 39.7 22 0.00055 16.9 2.2 37 75-111 10-48 (194)
106 PRK01441 Maf-like protein; Rev 39.6 25 0.00064 16.4 2.5 39 72-110 10-51 (207)
107 PRK05259 consensus 39.4 31 0.0008 15.8 4.4 146 4-158 32-192 (310)
108 PRK00164 moaA molybdenum cofac 38.8 32 0.00081 15.8 5.8 95 75-176 109-223 (334)
109 PRK03415 consensus 38.7 14 0.00036 18.1 1.1 39 74-112 9-49 (197)
110 pfam09987 DUF2226 Uncharacteri 37.8 19 0.00049 17.2 1.7 36 71-119 144-179 (252)
111 PRK03411 consensus 37.4 22 0.00055 16.9 1.9 37 75-111 10-48 (194)
112 pfam04002 DUF2466 Protein of u 37.4 22 0.00056 16.8 1.9 51 20-73 39-89 (123)
113 PRK02621 consensus 37.2 24 0.00061 16.6 2.0 54 72-132 83-136 (254)
114 PRK02308 uvsE putative UV dama 36.8 34 0.00087 15.6 4.7 113 33-152 89-210 (316)
115 PRK07028 bifunctional hexulose 36.8 34 0.00087 15.6 8.0 122 32-177 90-213 (429)
116 PRK02141 Maf-like protein; Rev 36.7 20 0.00052 17.0 1.6 39 73-111 15-55 (206)
117 PRK01839 Maf-like protein; Rev 36.6 23 0.00058 16.7 1.8 37 75-111 18-62 (209)
118 cd03089 PMM_PGM The phosphoman 36.2 23 0.0006 16.6 1.9 35 118-156 161-195 (443)
119 TIGR00124 cit_ly_ligase [citra 36.1 31 0.00078 15.9 2.4 151 22-187 147-326 (342)
120 COG0595 mRNA degradation ribon 35.9 35 0.0009 15.5 4.8 43 165-207 230-273 (555)
121 TIGR00955 3a01204 Pigment prec 35.1 36 0.00092 15.4 7.0 91 35-146 212-311 (671)
122 PRK13210 putative L-xylulose 5 35.0 36 0.00093 15.4 4.6 86 72-157 15-116 (284)
123 pfam07148 MalM Maltose operon 34.6 26 0.00065 16.4 1.9 13 300-312 247-259 (279)
124 TIGR02456 treS_nterm trehalose 34.0 18 0.00046 17.3 1.0 72 71-161 26-100 (560)
125 cd01577 IPMI_Swivel Aconatase- 33.9 30 0.00076 15.9 2.1 44 101-157 10-53 (91)
126 PRK00830 consensus 33.7 33 0.00085 15.6 2.3 52 72-130 87-138 (273)
127 PRK04694 Maf-like protein; Rev 33.3 22 0.00055 16.9 1.3 38 76-113 9-48 (190)
128 PRK02478 Maf-like protein; Rev 32.9 38 0.00096 15.3 2.5 38 74-111 10-55 (199)
129 smart00668 CTLH C-terminal to 32.8 29 0.00073 16.1 1.9 27 166-192 4-30 (58)
130 PRK03220 consensus 32.6 40 0.001 15.1 4.6 115 1-131 5-136 (257)
131 COG4130 Predicted sugar epimer 32.6 40 0.001 15.1 5.1 93 112-217 57-154 (272)
132 PRK02747 consensus 32.2 35 0.0009 15.5 2.2 51 72-129 83-133 (257)
133 PRK04554 consensus 31.8 41 0.001 15.1 6.3 140 8-158 42-198 (327)
134 pfam01976 DUF116 Protein of un 31.3 42 0.0011 15.0 2.6 37 134-180 72-108 (158)
135 TIGR01945 rnfC electron transp 31.2 36 0.00091 15.5 2.1 66 88-164 175-246 (444)
136 TIGR00339 sopT sulfate adenyly 31.0 32 0.00082 15.7 1.9 162 12-178 205-407 (424)
137 PRK00234 Maf-like protein; Rev 30.8 36 0.00092 15.4 2.1 37 75-111 10-48 (192)
138 pfam06898 YqfD Putative stage 30.8 43 0.0011 14.9 2.9 15 76-90 122-136 (383)
139 pfam07668 MpPF1 M penetrans pa 30.6 43 0.0011 14.9 2.5 20 212-231 299-319 (372)
140 pfam09551 Spore_II_R Stage II 30.5 22 0.00057 16.8 1.0 50 184-243 67-119 (132)
141 PRK03098 consensus 29.9 32 0.00081 15.8 1.7 36 76-111 7-44 (185)
142 PRK05211 consensus 29.8 18 0.00047 17.3 0.5 53 72-131 74-126 (248)
143 TIGR03669 urea_ABC_arch urea A 29.7 44 0.0011 14.8 3.2 56 110-169 126-181 (374)
144 TIGR00492 alr alanine racemase 29.3 26 0.00066 16.3 1.2 16 197-212 204-219 (383)
145 PRK11792 queF 7-cyano-7-deazag 29.1 46 0.0012 14.8 2.8 20 283-304 214-233 (274)
146 COG3442 Predicted glutamine am 28.3 27 0.00069 16.2 1.1 44 166-212 76-124 (250)
147 pfam01232 Mannitol_dh Mannitol 28.0 48 0.0012 14.6 4.0 36 23-62 7-42 (151)
148 PRK04719 consensus 27.4 30 0.00077 15.9 1.2 39 73-111 10-50 (188)
149 pfam03851 UvdE UV-endonuclease 27.3 49 0.0012 14.6 5.4 108 38-152 88-206 (275)
150 PRK04281 consensus 27.2 47 0.0012 14.7 2.2 52 72-130 83-134 (254)
151 COG3885 Uncharacterized conser 26.9 43 0.0011 15.0 1.9 104 24-136 65-181 (261)
152 cd00555 Maf Nucleotide binding 26.7 50 0.0013 14.5 2.4 37 75-111 7-45 (180)
153 TIGR03572 WbuZ glycosyl amidat 26.5 50 0.0013 14.5 4.2 52 72-130 83-134 (232)
154 pfam02878 PGM_PMM_I Phosphoglu 26.5 43 0.0011 14.9 1.9 69 83-154 5-74 (138)
155 KOG3423 consensus 26.3 40 0.001 15.1 1.7 92 60-153 74-171 (176)
156 PRK00148 Maf-like protein; Rev 26.1 48 0.0012 14.6 2.1 38 74-111 9-48 (195)
157 cd05803 PGM_like4 This PGM-lik 25.9 38 0.00097 15.3 1.5 17 18-35 36-52 (445)
158 TIGR01318 gltD_gamma_fam gluta 25.9 52 0.0013 14.4 3.2 67 50-124 167-237 (480)
159 PRK10564 maltose regulon perip 25.7 45 0.0011 14.8 1.9 20 294-313 264-284 (303)
160 PRK07218 replication factor A; 25.3 32 0.00082 15.7 1.1 13 186-198 230-242 (430)
161 TIGR01369 CPSaseII_lrg carbamo 25.2 46 0.0012 14.7 1.8 44 234-279 183-233 (1089)
162 TIGR02137 HSK-PSP phosphoserin 25.2 20 0.00052 17.0 0.0 99 75-188 43-145 (203)
163 pfam00875 DNA_photolyase DNA p 25.2 53 0.0014 14.3 4.6 107 34-156 14-125 (164)
164 pfam04481 DUF561 Protein of un 25.1 53 0.0014 14.3 4.1 121 99-248 66-215 (243)
165 pfam04430 DUF498 Protein of un 24.9 54 0.0014 14.3 4.0 55 97-156 34-88 (110)
166 TIGR02089 TTC tartrate dehydro 24.7 24 0.00061 16.6 0.3 14 204-217 259-273 (355)
167 KOG1402 consensus 24.4 55 0.0014 14.2 5.1 136 133-291 192-333 (427)
168 PRK02145 consensus 24.3 55 0.0014 14.2 2.2 22 106-128 112-133 (257)
169 cd00758 MoCF_BD MoCF_BD: molyb 24.3 48 0.0012 14.6 1.8 59 118-178 2-60 (133)
170 TIGR02403 trehalose_treC alpha 23.7 37 0.00094 15.4 1.1 85 58-157 11-96 (555)
171 KOG4063 consensus 23.4 57 0.0015 14.1 4.0 81 195-282 75-156 (158)
172 pfam02545 Maf Maf-like protein 23.4 58 0.0015 14.1 2.6 39 73-111 7-48 (193)
173 COG0424 Maf Nucleotide-binding 23.3 58 0.0015 14.1 2.2 52 76-127 12-72 (193)
174 PRK02676 consensus 23.3 58 0.0015 14.1 2.1 38 74-111 10-49 (196)
175 pfam10237 N6-adenineMlase Prob 23.2 49 0.0012 14.6 1.6 65 88-176 49-114 (161)
176 KOG2929 consensus 23.1 7.2 0.00018 20.0 -2.6 17 181-197 162-178 (348)
177 cd05800 PGM_like2 This PGM-lik 23.1 58 0.0015 14.1 2.5 34 120-157 173-206 (461)
178 pfam00988 CPSase_sm_chain Carb 22.9 45 0.0011 14.8 1.4 88 193-285 9-103 (131)
179 TIGR01828 pyru_phos_dikin pyru 22.6 60 0.0015 14.0 2.2 102 127-247 5-118 (920)
180 PRK08999 hypothetical protein; 22.5 60 0.0015 14.0 2.7 19 178-197 238-256 (312)
181 PRK00078 Maf-like protein; Rev 22.5 60 0.0015 14.0 2.5 37 74-110 8-47 (192)
182 PRK13597 imidazole glycerol ph 22.3 60 0.0015 14.0 2.6 50 72-128 84-133 (252)
183 PTZ00081 enolase (2-phospho-D- 22.2 61 0.0015 13.9 6.2 38 263-300 251-289 (442)
184 cd00737 endolysin_autolysin En 22.2 58 0.0015 14.1 1.9 38 165-202 91-128 (133)
185 PRK03442 consensus 22.2 61 0.0016 13.9 2.8 37 74-110 9-52 (213)
186 TIGR00342 TIGR00342 thiamine b 21.8 62 0.0016 13.9 3.6 86 12-107 180-270 (391)
187 TIGR03156 GTP_HflX GTP-binding 21.8 62 0.0016 13.9 2.9 58 37-107 18-81 (351)
188 TIGR02153 gatD_arch glutamyl-t 21.7 34 0.00088 15.5 0.6 42 165-230 296-343 (413)
189 COG0052 RpsB Ribosomal protein 20.8 21 0.00055 16.9 -0.6 36 104-148 53-88 (252)
190 TIGR02440 FadJ fatty oxidation 20.8 51 0.0013 14.4 1.4 13 25-37 394-406 (732)
191 cd03033 ArsC_15kD Arsenate Red 20.8 65 0.0017 13.8 2.9 20 72-91 10-29 (113)
192 PTZ00150 phosphoglucomutase; P 20.2 67 0.0017 13.7 2.6 24 287-310 560-584 (593)
193 PRK11058 putative GTPase HflX; 20.1 67 0.0017 13.7 3.6 64 20-91 10-79 (426)
No 1
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=100.00 E-value=0 Score=731.41 Aligned_cols=293 Identities=42% Similarity=0.718 Sum_probs=281.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 0188499993156502899999999999502--79779998379868984788866200007899998851131000225
Q gi|254780846|r 16 HLKGGVVAIGNFDGIHLGHHLILEQAIKIAN--NSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRY 93 (324)
Q Consensus 16 ~~~~~vvtiG~FDGvH~GHq~Li~~~~~~a~--~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~ 93 (324)
+.++||||||+|||||+|||+||+++++.|+ +.+++|+||+|||+.++.++.++.+|++.++|.++|+++|+|+++++
T Consensus 9 ~~~~svvaIG~FDGvH~GHq~li~~~~~~a~~~~~~s~v~TF~phP~~vl~~~~~~~~l~~~~ek~~ll~~~Gid~~~~~ 88 (303)
T PRK05627 9 PLEGCVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREFFAPDSAPARLTPLRDKAELLAELGVDYVLVL 88 (303)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 89983899985823468999999999999998499789999569999981998886124999999999997399879985
Q ss_pred CCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHH
Q ss_conf 64057752283026888621427802999834553033775560246775101264167615223023330230368999
Q gi|254780846|r 94 KFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTA 173 (324)
Q Consensus 94 ~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~ 173 (324)
+||++|++|||++|++++|+++++++.||||+|||||++|+||+++|+++|+++||+|.+++++.. ++++||||+||++
T Consensus 89 ~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivvG~Df~FG~~r~G~~~~L~~~~~~~g~~v~~v~~~~~-~~~~ISSt~IR~~ 167 (303)
T PRK05627 89 PFDEEFAKLSAEEFIEDLLVKGLNVKFVVVGDDFRFGKKRAGDFELLQEAGKEFGFEVEVVPEVCE-DGERVSSTAIRQA 167 (303)
T ss_pred CCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCEEE-CCEEEEHHHHHHH
T ss_conf 676787659999999998872678449997577333678888999999999874961897756753-8967609999999
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEEEEEHHCCCCCCHHHHEEEEEEEECCCCCHHCCCCCCCCCCCC
Q ss_conf 87258999998500000000012210020110111112110000222310110002476305656211057899726779
Q gi|254780846|r 174 LTKGHVLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSYSGVANFGRNPTMVPN 253 (324)
Q Consensus 174 l~~Gdi~~an~lLGr~y~i~G~Vv~G~~~Gr~lGfPTaNi~~~~~~~p~~GVY~~~v~~~~~~~~~~v~niG~~PT~~~~ 253 (324)
|.+|||+.||+||||||+++|+|+||+++||+||||||||.++++++|+.||||+++.+ ++.+|+||+|||.||||++
T Consensus 168 i~~G~i~~A~~lLGr~y~i~G~Vv~G~~~Gr~lGfPTANl~~~~~~lP~~GVYa~~v~i-~~~~y~gv~niG~rPTf~~- 245 (303)
T PRK05627 168 LAEGDLELANELLGRPYSISGRVVHGQKLGRTLGFPTANLPLPRYVLPADGVYAVRVKV-DGKPYPGVANIGTRPTVDG- 245 (303)
T ss_pred HHCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE-CCCEEEEEEEECCCCCCCC-
T ss_conf 98598989999839887675289846762631468864447877426998479999998-9907874444046884489-
Q ss_pred CCEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7149999940678551898899994600008874689899999999979999999874
Q gi|254780846|r 254 GPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILES 311 (324)
Q Consensus 254 ~~~~iE~hildf~~dlYg~~i~v~f~~~iR~e~kF~s~~~L~~qI~~D~~~a~~~l~~ 311 (324)
.++++|||||||++||||++++|+|++|||+|+||+|+|+|++||++|++.||++|+.
T Consensus 246 ~~~~iE~hildf~~dlYg~~i~v~f~~~iR~E~KF~s~e~L~~Qi~~D~~~ar~~la~ 303 (303)
T PRK05627 246 GRQLLEVHLLDFSGDLYGEHIAVEFLKKLRDEQKFDSLDELKAQIAKDIETARAFLAL 303 (303)
T ss_pred CCEEEEEEECCCCCCCCCCEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8558999964789770898799995883079977299999999999999999998569
No 2
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=655.56 Aligned_cols=302 Identities=41% Similarity=0.758 Sum_probs=285.9
Q ss_pred CEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHCCCCCCCCCCHHHHH
Q ss_conf 9422488521127610188499993156502899999999999502--79779998379868984788866200007899
Q gi|254780846|r 1 MHVFHNIEINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIAN--NSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQ 78 (324)
Q Consensus 1 Mki~~~~~~~~~~p~~~~~~vvtiG~FDGvH~GHq~Li~~~~~~a~--~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k 78 (324)
|++++.+ .+++....++++|||+|||||+|||+|++++.+.|+ +.+++|+||+|||+.++.+..++..|++.++|
T Consensus 1 m~~~~~~---~~~~~~~~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k 77 (304)
T COG0196 1 MKIIRGT---HNIPEDLRGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREK 77 (304)
T ss_pred CCEEECC---CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCCCCCCCHHHH
T ss_conf 9368635---6787445785899974776156699999999999987289669999369978870877772003798999
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHH
Q ss_conf 99885113100022564057752283026888621427802999834553033775560246775101264167615223
Q gi|254780846|r 79 EKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELR 158 (324)
Q Consensus 79 ~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~ 158 (324)
+++|+.+|+|.+++++||.+|+++||++|++ +|++.++++.|+||+||+||++|+||+++|+.+|++ ||+|++++++.
T Consensus 78 ~~~l~~~gvd~~~v~~F~~~fa~ls~~~Fv~-~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~-gf~v~~v~~~~ 155 (304)
T COG0196 78 IRLLAGYGVDALVVLDFDLEFANLSAEEFVE-LLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQK-GFEVTIVPKIN 155 (304)
T ss_pred HHHHHHCCCCEEEEEECCHHHHHCCHHHHHH-HHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCC-CCEEEEECCEE
T ss_conf 9999866996899996786576399789999-998445872899933641688888989999973557-85399945472
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEEEEEHHCCCCCCHHHHEEEEEEEECCCC
Q ss_conf 02333023036899987258999998500000000012210020110111112110000222310110002476305656
Q gi|254780846|r 159 NNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSY 238 (324)
Q Consensus 159 ~~~~~~ISSt~IR~~l~~Gdi~~an~lLGr~y~i~G~Vv~G~~~Gr~lGfPTaNi~~~~~~~p~~GVY~~~v~~~~~~~~ 238 (324)
. ++.+||||+||++|.+||++.||+||||||+++|+|+||+++||+||||||||.++++.+|+.|||++++...++. |
T Consensus 156 ~-~~~~iSSt~IR~~L~~gdl~~A~~lLG~py~i~G~Vv~G~~~Gr~lGfPTaNi~~~~~~~~~~GVYav~v~~~~~~-~ 233 (304)
T COG0196 156 E-EGIRISSTAIRQALREGDLEEANKLLGRPYSIEGKVVHGQKLGRTLGFPTANIYLKDNVLPAFGVYAVRVKLDGGV-Y 233 (304)
T ss_pred C-CCCEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-C
T ss_conf 2-7957825999998764898899986199858998997253035604877316566665155770699999978864-2
Q ss_pred CHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 211057899726779714999994067855189889999460000887468989999999997999999987
Q gi|254780846|r 239 SGVANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILE 310 (324)
Q Consensus 239 ~~v~niG~~PT~~~~~~~~iE~hildf~~dlYg~~i~v~f~~~iR~e~kF~s~~~L~~qI~~D~~~a~~~l~ 310 (324)
+||+|||+|||++++ .+++|+|||||++|+||+.++|+|++|||+|+||+|+|+|++||++|++.||+|++
T Consensus 234 ~gv~~vG~rpt~~~~-~~~lEvhi~Df~~dlYG~~i~v~~~~~iR~e~kF~s~d~L~~qi~~D~~~Ar~~~~ 304 (304)
T COG0196 234 PGVANVGYRPTVDGS-ERSLEVHILDFNGDLYGERVKVRFLKFIRDEKKFDSLDELKEQIEKDIERARKLLA 304 (304)
T ss_pred CCEEEECCCCCCCCC-EEEEEEEEECCCCCCCCCEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 116885216501687-06899997325642367369999864225566788899999999999999999749
No 3
>TIGR00083 ribF riboflavin biosynthesis protein RibF; InterPro: IPR002606 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme , the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family . The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases . This entry represents the bifunctional enzyme, FAD synthetase / riboflavin kinase.; GO: 0003919 FMN adenylyltransferase activity, 0008531 riboflavin kinase activity, 0009231 riboflavin biosynthetic process.
Probab=100.00 E-value=0 Score=642.82 Aligned_cols=288 Identities=40% Similarity=0.667 Sum_probs=267.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHC--CCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 9999315650289999999999--9502--79779998379868984788866200007899998851131000225640
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAI--KIAN--NSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFT 96 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~--~~a~--~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~ 96 (324)
++|||+|||||+|||.|++.++ +.|. +++.+|++|+|||+.++.+...|..|+++++|.+.++..|++.+++.+||
T Consensus 1 ~L~IG~FDGlH~GHq~l~~~~~df~~A~e~~L~~avllf~~~P~~~~~~~~~P~rL~pL~~k~~~~~~~~~~~~~v~~Fd 80 (296)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKDFQKAEEKGLPVAVLLFEPHPSEQFSGLKAPARLTPLEEKARQLEALGVEVLVVVKFD 80 (296)
T ss_pred CCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf 91011566523689999986355676876199479998628873440466788645684899999998537738999623
Q ss_pred HHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 57752283026888621427802999834553033775560246775101264167615223023330230368999872
Q gi|254780846|r 97 LETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTK 176 (324)
Q Consensus 97 ~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~ 176 (324)
+++|+|||.+|++++|++.|+++.++||.|||||++|+||+.+|+...+++++.|.. +...+.+ ++||||.||++|++
T Consensus 81 ~~~a~l~A~~F~~~~~~~~L~~~~l~VG~DF~FG~~r~g~~~~l~~~~~~~~~~v~~-~~~~~~d-~riSSs~IR~aL~~ 158 (296)
T TIGR00083 81 EEFANLSAKQFIDQLLVKHLRVKFLVVGDDFRFGKDRQGDFLLLQLAGNETIFTVIV-KQLFCQD-KRISSSAIRQALKN 158 (296)
T ss_pred HHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-CCCEECC-EEEEHHHHHHHHHC
T ss_conf 576524865558987432677568886166133667876057877404854799974-6613326-04515689876424
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEEEEEHHCCCCCCHHHHEEEEEEEECC--CCCHHCCCCCCCCCCC--
Q ss_conf 589999985000000000122100201101111121100002223101100024763056--5621105789972677--
Q gi|254780846|r 177 GHVLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQT--SYSGVANFGRNPTMVP-- 252 (324)
Q Consensus 177 Gdi~~an~lLGr~y~i~G~Vv~G~~~Gr~lGfPTaNi~~~~~~~p~~GVY~~~v~~~~~~--~~~~v~niG~~PT~~~-- 252 (324)
||++.||+|||+||.+.|+||||+++||+||||||||.+++.++|+.|||++.+...++. .|+||+|||.||||.+
T Consensus 159 g~L~lAN~LLg~PY~~~G~Vi~G~~lGR~~GFPTANi~L~~~~~~~~~g~y~~~~~~~~~dv~~~GV~NiG~RPT~~~~~ 238 (296)
T TIGR00083 159 GDLELANKLLGRPYAIKGTVIHGQKLGRTLGFPTANIKLKNQVLPLKGGYYVVVVLLNGEDVPYPGVGNIGKRPTFIGKK 238 (296)
T ss_pred CCHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEEEECCCEEEEEEEEECCCCCCCCCCC
T ss_conf 84788998548714788789852851040147525645677543047158999985176000330134508876324567
Q ss_pred CCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9714999994067855189889999460000887468989999999997999999987
Q gi|254780846|r 253 NGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILE 310 (324)
Q Consensus 253 ~~~~~iE~hildf~~dlYg~~i~v~f~~~iR~e~kF~s~~~L~~qI~~D~~~a~~~l~ 310 (324)
+..+.+|||||||++|+||+.|+|+|.+|||+|.||+|+++|++||++|+.+|++||.
T Consensus 239 ~~~~~~EvHlldf~~~~YG~~~~~~~~~~IR~~~KF~s~~~Lk~qI~~D~~~A~~~f~ 296 (296)
T TIGR00083 239 DQQLVIEVHLLDFSQELYGQEIKVELVKKIRPEQKFSSLDELKKQIEKDLQQAKKFFN 296 (296)
T ss_pred CCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 8741000001212004786403676543037765773479999999998999999819
No 4
>PRK07143 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=569.59 Aligned_cols=274 Identities=19% Similarity=0.326 Sum_probs=240.1
Q ss_pred CEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 94224885211276101884999931565028999999999995027977999837986898478886620000789999
Q gi|254780846|r 1 MHVFHNIEINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK 80 (324)
Q Consensus 1 Mki~~~~~~~~~~p~~~~~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~ 80 (324)
||||+.. .+++++++||||||+|||||+|||+||+++++.|+. .++++||+|+| + +...+..|++.++|++
T Consensus 3 m~i~~~~----~~~~~~~~svvtIG~FDGvH~GHq~Li~~~~~~~~~-~~~~~~~~P~~--~--~~~~~~~l~~~~eK~~ 73 (277)
T PRK07143 3 MKVYKFP----LLNPDFEKPTFVIGGFESFHLGHLKLYKKALEISGE-IVFIVVKNPEN--L--PKNTNENFFDLNSRIQ 73 (277)
T ss_pred EEEECCC----CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-CEEEEECCCCC--C--CCCCCCCCCCHHHHHH
T ss_conf 8997789----988244885999983734268999999999985799-67999338643--6--5776534799999999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCC
Q ss_conf 88511310002256405775228302688862142780299983455303377556024677510126416761522302
Q gi|254780846|r 81 ILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNN 160 (324)
Q Consensus 81 ~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~ 160 (324)
+|+++|+|++++++||++|++|||++|+++++ +++++.||||+|||||++|+||+++|++++ .++.+++++..
T Consensus 74 ~l~~~Gvd~~~~~~F~~~~a~ls~e~Fi~~l~--~l~~k~ivVG~Df~FG~~r~G~~~~Lk~~~----~~v~iv~~~~~- 146 (277)
T PRK07143 74 MFANLNIKNVILIDFNEELINLSGEDFIEKLK--KLQVDFIVVGKDFRFGKNAKWNASDLKEFF----PNVEIVEILKI- 146 (277)
T ss_pred HHHHCCCCEEEEECCCHHHHCCCHHHHHHHHH--HCCCCEEEECCCCEECCCCCCCHHHHHHHC----CEEEECCCEEE-
T ss_conf 99975999999936999997699999999987--079819998687020689888999999738----94897585987-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEEEEEHHCCCCCCHHHHEEEEEEEECCCCCH
Q ss_conf 33302303689998725899999850000000001221002011011111211000022231011000247630565621
Q gi|254780846|r 161 KSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSYSG 240 (324)
Q Consensus 161 ~~~~ISSt~IR~~l~~Gdi~~an~lLGr~y~i~G~Vv~G~~~Gr~lGfPTaNi~~~~~~~p~~GVY~~~v~~~~~~~~~~ 240 (324)
++++||||+||++|++||++.||+||||||+|+|+|+||++ |||||+++ .|+.||||++|.+ ++.+|+|
T Consensus 147 ~~~~ISST~IR~~l~~G~i~~An~lLGr~y~i~G~V~~g~~----l~~p~~~i------~p~~GVYa~~v~i-~~~~y~g 215 (277)
T PRK07143 147 GNKKISTSLLKELIEFGDIELLNSLLLYNYSISITINANAE----FTYPKNLI------KLHAGIYLAYVVI-KNLKYPG 215 (277)
T ss_pred CCEEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEECCCC----CCCCCCCC------CCCCEEEEEEEEE-CCEEEEE
T ss_conf 99378389999999859999999973997399999972988----68981216------8997599999999-9999998
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 105789972677971499999406785518988999946000088746898999999999799999998744
Q gi|254780846|r 241 VANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILESS 312 (324)
Q Consensus 241 v~niG~~PT~~~~~~~~iE~hildf~~dlYg~~i~v~f~~~iR~e~kF~s~~~L~~qI~~D~~~a~~~l~~~ 312 (324)
|+|||.+|+ .+|+|||||++||||++|+|+|++|||+|+||++.+ ||++|++.||+||.++
T Consensus 216 ~~niG~~~~-------~iE~hifdF~~diYg~~i~V~fl~~IR~e~kf~~~~----~l~~die~aK~~f~n~ 276 (277)
T PRK07143 216 VLLIKFANK-------IIKFLFFELKEIFTNYTIRIEIIKSIRYITSLESNN----LFNDDIEIAKKFFLNN 276 (277)
T ss_pred EEEECCCCC-------EEEEEECCCCCCCCCCEEEEEEHHHCCCCCCCCCHH----HHHHHHHHHHHHHHHC
T ss_conf 999689985-------799995148841379849999714224885446699----9999999999998648
No 5
>cd02064 Flavokinase_C Riboflavin kinase (Flavokinase). This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin. 5'-phospho transferase and ATP:FMN-adenylyltransferase activities . The C-terminal domain has FMN-adenylyltransferase activitie. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD . A domain has been identified in the N-terminal region that is well conserved in all the bacterial FAD synthetases.This domain has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases .
Probab=100.00 E-value=0 Score=393.44 Aligned_cols=177 Identities=41% Similarity=0.694 Sum_probs=169.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 99993156502899999999999502--7977999837986898478886620000789999885113100022564057
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIAN--NSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLE 98 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~--~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~ 98 (324)
|+|||+|||||+|||+||+++++.|+ +.+++|+||+|||+.+++++.+..+|++.++|.++|+++|+|+++.++||++
T Consensus 1 vv~iG~FDGvHlGHq~Li~~~~~~a~~~~~~~~v~tF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~gid~~~~i~F~~~ 80 (179)
T cd02064 1 VVAIGNFDGVHLGHQALIKRAKEIARERGLPSAVLTFEPHPREVLRPEKAPKLLTTLEEKLELLAALGVDYLLVLPFDKE 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHH
T ss_conf 98996265415899999999999999829976999962880897188878702589999999998669999998447888
Q ss_pred HHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 75228302688862142780299983455303377556024677510126416761522302333023036899987258
Q gi|254780846|r 99 TANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGH 178 (324)
Q Consensus 99 ~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~Gd 178 (324)
+++|||++|++.+|. +++++.||||+|||||++|+||+++|+++|+++|+++.+++++.. ++++||||+||++|++||
T Consensus 81 ~~~ls~~~Fi~~~l~-~l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~~~~~~v~~i~~~~~-~~~~ISSs~IR~~i~~G~ 158 (179)
T cd02064 81 FASLSAEEFVKDLLV-KLNAKHVVVGFDFRFGKGRSGNAELLRELGEKYGFEVEIVPPVTI-DGEKVSSTRIREALAEGD 158 (179)
T ss_pred HHCCCHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCEEE-CCCEEEHHHHHHHHHCCC
T ss_conf 863999999998741-479639997773025789887999999999872964999376960-891673899999998599
Q ss_pred HHHHHHHHHHCCHHHHHHHHC
Q ss_conf 999998500000000012210
Q gi|254780846|r 179 VLNAAHLLGYRFTIESDVIHG 199 (324)
Q Consensus 179 i~~an~lLGr~y~i~G~Vv~G 199 (324)
|+.||+||||||+++|+|+||
T Consensus 159 i~~An~lLGr~y~i~G~Vi~G 179 (179)
T cd02064 159 VELANELLGRPYSISGTVVHG 179 (179)
T ss_pred HHHHHHHCCCCCEEEEEEEEC
T ss_conf 999999819983788998059
No 6
>pfam06574 FAD_syn FAD synthetase. This family corresponds to the N terminal domain of the bifunctional enzyme riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin 5'-phospho transferase and ATP:FMN-adenylyltransferase activity. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD. This domain is thought to have the flavin mononucleotide (FMN) adenylyltransferase activity.
Probab=100.00 E-value=0 Score=335.26 Aligned_cols=156 Identities=38% Similarity=0.679 Sum_probs=147.9
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 7610188499993156502899999999999502--79779998379868984788866200007899998851131000
Q gi|254780846|r 13 LPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIAN--NSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSAL 90 (324)
Q Consensus 13 ~p~~~~~~vvtiG~FDGvH~GHq~Li~~~~~~a~--~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~v 90 (324)
+|.+.++||+|||+|||||+|||+||+++++.|+ +.+++|+||+|||+.++.++..+.+|++.++|+++|+++|+|++
T Consensus 1 ~~~~~~~svvtiG~FDGvH~GHq~li~~~~~~a~~~~~~~~viTF~phP~~~l~~~~~~~~l~~~~~K~~~l~~~Gid~~ 80 (158)
T pfam06574 1 LPEDPRGSVVTIGNFDGVHLGHQALIAHAKEIARELGLPSVVVTFEPHPREVFAPDKAPERLTTLREKIELLAELGVDRL 80 (158)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCHHCCCHHHHHHHHHHCCCCEE
T ss_conf 99888981999974653158999999999999998299789999649877860876664101579999999996699999
Q ss_pred CCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHH
Q ss_conf 2256405775228302688862142780299983455303377556024677510126416761522302333023036
Q gi|254780846|r 91 IRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSN 169 (324)
Q Consensus 91 i~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~ 169 (324)
+.++||+++++|||++|++++|.++++++.||||+|||||++|+||+++|+++|+++||++.+++++.. ++++|||||
T Consensus 81 ~~i~F~~~~~~ls~e~Fi~~iL~~~l~~~~ivvG~df~FG~~r~G~~~~L~~~~~~~g~~v~~i~~~~~-~~~~ISSTR 158 (158)
T pfam06574 81 LVLPFDKEFAKLSAEEFIENILVKGLGAKHVVVGFDFRFGKGRAGDVELLKELGAKYGFEVTVVPPVTL-DGEKISSTR 158 (158)
T ss_pred EEEHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCEEE-CCEEECCCC
T ss_conf 982257998749999999999871676248997365015799987999999999876948999698972-991776889
No 7
>pfam01687 Flavokinase Riboflavin kinase. This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein known as RibC in Bacillus subtilis. The RibC protein from Bacillus subtilis has both flavokinase and flavin adenine dinucleotide synthetase (FAD-synthetase) activities. RibC plays an essential role in the flavin metabolism. This domain is thought to have kinase activity.
Probab=100.00 E-value=2.8e-45 Score=315.25 Aligned_cols=124 Identities=47% Similarity=0.807 Sum_probs=117.3
Q ss_pred HHHHCCHHHHHHHHCCCCCCEEEEEEEEEEHH-CCCCCCHHHHEEEEEEEECCCCCHHCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 50000000001221002011011111211000-02223101100024763056562110578997267797149999940
Q gi|254780846|r 185 LLGYRFTIESDVIHGEKIGRTLGFPTANMQLS-PDILLKEGVYAIRFRTQDQTSYSGVANFGRNPTMVPNGPLLLESFIF 263 (324)
Q Consensus 185 lLGr~y~i~G~Vv~G~~~Gr~lGfPTaNi~~~-~~~~p~~GVY~~~v~~~~~~~~~~v~niG~~PT~~~~~~~~iE~hil 263 (324)
||||||+++|+|+||+++||+||||||||.++ +.++|+.|||++++.+ ++++|+||+|||.||||++ ...++|+|||
T Consensus 1 lLgr~y~~~G~Vv~G~~~Gr~lGfPTaNi~~~~~~~~P~~GVYa~~~~~-~~~~~~~v~~iG~rPTf~~-~~~~~E~hil 78 (125)
T pfam01687 1 LLGRPYSISGTVVHGKGRGRTLGFPTANLSLPKDKLLPKNGVYAVRVKI-DGKVYPGVANIGVNPTFGG-TKPTIEVHIL 78 (125)
T ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEE-CCEEEEEEEEEECCCCCCC-CCEEEEEEEE
T ss_conf 9699658989999788544545876232457621065777728999998-9958657999824883388-7428999995
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67855189889999460000887468989999999997999999987
Q gi|254780846|r 264 DFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILE 310 (324)
Q Consensus 264 df~~dlYg~~i~v~f~~~iR~e~kF~s~~~L~~qI~~D~~~a~~~l~ 310 (324)
||++|+||++|+|+|++|||+|+||+|+|+|++||++|++.||++|+
T Consensus 79 df~~dlYg~~i~v~~~~~iR~e~kF~s~~~L~~qI~~D~~~ar~~l~ 125 (125)
T pfam01687 79 DFDGDLYGEEIRVEFLKFLRPEKKFDSLEELKAQIEKDIEQARKILA 125 (125)
T ss_pred ECCCCCCCCEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 05776679728999777007984749999999999999999999729
No 8
>KOG3110 consensus
Probab=99.91 E-value=4.2e-25 Score=184.10 Aligned_cols=133 Identities=26% Similarity=0.398 Sum_probs=116.1
Q ss_pred HHHHCCHHHHHHHHCCCCCC-EEEEEEEEEEHHC-CCCC---CHHHHEEEEEEEECCCCCHHCCCCCCCCCCCCCCEEEE
Q ss_conf 50000000001221002011-0111112110000-2223---10110002476305656211057899726779714999
Q gi|254780846|r 185 LLGYRFTIESDVIHGEKIGR-TLGFPTANMQLSP-DILL---KEGVYAIRFRTQDQTSYSGVANFGRNPTMVPNGPLLLE 259 (324)
Q Consensus 185 lLGr~y~i~G~Vv~G~~~Gr-~lGfPTaNi~~~~-~~~p---~~GVY~~~v~~~~~~~~~~v~niG~~PT~~~~~~~~iE 259 (324)
|--.||.+.|.||+|-+||+ +||-||||+..+. .-+| +.|||.+|..+..+..++.+++||.||-+ .|+..++|
T Consensus 8 ~~~~P~~~~g~VVrGFGRGskeLGiPTAN~~~~~v~~l~~~l~~GvYfG~A~v~~~~v~kMvmSIGwNP~Y-~N~~Kt~E 86 (153)
T KOG3110 8 MSPLPLFFGGEVVRGFGRGSKELGIPTANFPENVVPKLPEDLPSGVYFGWAHVDKGDVFKMVMSIGWNPYY-KNKKKTME 86 (153)
T ss_pred CCCCCEEECCEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCC-CCCCCCEE
T ss_conf 89887786572788427786401875578997787345124877217876551577714678870358443-77421122
Q ss_pred EEEE-CCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9940-6785518988999946000088746898999999999799999998744872113
Q gi|254780846|r 260 SFIF-DFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILESSYPLSER 318 (324)
Q Consensus 260 ~hil-df~~dlYg~~i~v~f~~~iR~e~kF~s~~~L~~qI~~D~~~a~~~l~~~~~~~~~ 318 (324)
+||+ ||..|.||+++++..+-|||||+-|+|+|+|++.|..|++.|++.++..-...-+
T Consensus 87 ~hlih~f~~DFYge~l~~~IvGyiRpe~nf~slesLi~~I~~Di~vA~~~l~~p~~~k~K 146 (153)
T KOG3110 87 LHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDIEVAKKVLDLPEYAKFK 146 (153)
T ss_pred EEEEHHCCCCHHHHEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 211022154043316357788852312370219999999886699999862582144432
No 9
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain.Many ofthese proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.90 E-value=8.3e-24 Score=175.69 Aligned_cols=140 Identities=29% Similarity=0.404 Sum_probs=116.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCHHHH
Q ss_conf 999931565028999999999995027977999837986898478886620000789999885113-1000225640577
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMG-FSALIRYKFTLET 99 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~G-id~vi~~~F~~~~ 99 (324)
++++|+|||+|+||++|++++.+.+ +..+.+++|++||... ...+++.++|.++++.++ .+.++..+|+ ++
T Consensus 1 vi~~G~FDp~H~GH~~li~~a~~~~-~~~~~v~~~~~~~~~~------~~~~~~~~~R~~~l~~~~~~~~v~~~~~~-~~ 72 (141)
T cd02039 1 VLAGGSFDPVHLGHLALIERAKELA-LDELIVGVFSDPPKKV------PKPLFSLEERLEMLEAAGKVDEVVVLEFD-RF 72 (141)
T ss_pred CEECCCCCCCCHHHHHHHHHHHHHC-CCCEEEEECCCCCCCC------CCCCCCHHHHHHHHHHCCCCCEEEEEHHH-CC
T ss_conf 9894464876799999999999978-9961799748984335------88889999999999974898669851331-33
Q ss_pred HHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHH
Q ss_conf 52283026888621427802999834553033775560246775101264167615223023330230368999
Q gi|254780846|r 100 ANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTA 173 (324)
Q Consensus 100 a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~ 173 (324)
+.+++++|++.++ +.++++.++||+||+||+++.||.. ......++++.+++.... ++..||||+||++
T Consensus 73 ~~~~~~~~~~~~~-~~~~~~~ivvG~D~~~g~~~~~~~~---~~~~~~~~~~~vi~~~~~-~~~~iSSt~IR~~ 141 (141)
T cd02039 73 SWSYTVDFLKKLL-EKLNADVVVVGDDFLFGFDRWGNLR---YEELKSGGEVVVVPRTGY-DGEGISSTRIRER 141 (141)
T ss_pred CCCCHHHHHHHHH-HHCCCCEEEECCCCCCCCCCCCCHH---HHHHHCCCEEEEECCCCC-CCCEECCCHHHCC
T ss_conf 7788999999999-6378744998774145886306989---999776988999788677-9967673463079
No 10
>cd02156 nt_trans nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.44 E-value=1.7e-12 Score=102.13 Aligned_cols=142 Identities=23% Similarity=0.285 Sum_probs=101.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHH-
Q ss_conf 99993156502899999999999502--797799983798689847888662000078999988511310002256405-
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIAN--NSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTL- 97 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~--~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~- 97 (324)
++++|.||++|+||+.++..+...++ ...+.+++++++|...... ..+++.++|.+.+++...+..+.+++..
T Consensus 1 ~~~~g~fd~~H~GH~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 76 (147)
T cd02156 1 VLAPGPFDPLHLGHLRLIERADELARYGGDELIVIDDTDPPIKKLKG----KPLESLEERLEMLREALKDLGVVLDFDLE 76 (147)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCC----CCCCCHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 98986048767899999999999999769928999789991453378----76768999999999828881499857788
Q ss_pred --HHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHH
Q ss_conf --775228302688862142780299983455303377556024677510126416761522302333023036
Q gi|254780846|r 98 --ETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSN 169 (324)
Q Consensus 98 --~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~ 169 (324)
......+.+|+..++....++..+++|.|++||..+.+....+.. .....+.+++.-.......+|||.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~sSt~ 147 (147)
T cd02156 77 REDGVPDYTFDFVKDLLALLLPVDVVVVGKDQLFGFEREGALLLLEL---LKGPEVVVVPRGLLDEGGGKSSTS 147 (147)
T ss_pred HHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHH---HCCCCEEEECCHHCCCCCEECCCC
T ss_conf 86337666799999999844699889988698789999869999997---359988995711026787761789
No 11
>cd02172 RfaE_N RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.13 E-value=8.8e-10 Score=84.44 Aligned_cols=135 Identities=21% Similarity=0.331 Sum_probs=93.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCC
Q ss_conf 88499993156502899999999999502797799-9837986898478886620000789999885113-100022564
Q gi|254780846|r 18 KGGVVAIGNFDGIHLGHHLILEQAIKIANNSPITV-LSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMG-FSALIRYKF 95 (324)
Q Consensus 18 ~~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~v-iTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~G-id~vi~~~F 95 (324)
+..+.|-|.||-+|.||..+|++|++.+.. ++| ++-| +.. .+... ..+.+.++|.++|+++. +|.+++.
T Consensus 4 kkiv~~~G~FDl~H~GHi~~l~~Ak~~gd~--LiVgv~sD--~~i-~k~k~--~Pi~~~~eR~~il~sl~~VD~Vii~-- 74 (143)
T cd02172 4 KKVVLTHGCFDLLHAGHVRHLLAARSLGDI--LVVGLTSD--RSV-LKGPG--RPIFPEDLRAEVLAALECVDYVVLF-- 74 (143)
T ss_pred CEEEEECCEECCCCHHHHHHHHHHHHCCCE--EEEEEECC--HHH-HCCCC--CCEECHHHHHHHHHCCCCCCEEEEC--
T ss_conf 989999273377899999999999974998--99999689--889-66899--8744599999998453766689978--
Q ss_pred HHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHH
Q ss_conf 05775228302688862142780299983455303377556024677510126416761522302333023036899987
Q gi|254780846|r 96 TLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALT 175 (324)
Q Consensus 96 ~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~ 175 (324)
+ ..++.++++ .+++..++.|.||.-+.+. ++...-.+.++++|.++..++- .+.+|||.|.+-|.
T Consensus 75 ~----~~~~~~~i~-----~~kpdi~v~G~Dy~~~~~~-~~~~~e~~~~~~~gg~v~~~~~-----~~~~SST~ii~ri~ 139 (143)
T cd02172 75 D----EPTAEELID-----ALQPDIYVKGGDYANGENT-GEILAEAEAVEAYGGKIVFTPG-----EIVFSSSGLINRIL 139 (143)
T ss_pred C----CCCHHHHHH-----HHCCEEEEECCCCCCCCCC-CCCCHHHHHHHHHCCEEEEECC-----CCCEEHHHHHHHHH
T ss_conf 9----999789998-----7198699989864488987-6513589999980989999199-----98777799999999
Q ss_pred H
Q ss_conf 2
Q gi|254780846|r 176 K 176 (324)
Q Consensus 176 ~ 176 (324)
+
T Consensus 140 ~ 140 (143)
T cd02172 140 D 140 (143)
T ss_pred H
T ss_conf 8
No 12
>cd02171 G3P_Cytidylyltransferase These sequences describe glycerol-3-phosphate cytidylyltransferase, also called CDP-glycerol pyrophosphorylase. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase . Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.03 E-value=2.3e-09 Score=81.79 Aligned_cols=125 Identities=22% Similarity=0.315 Sum_probs=80.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCHHH
Q ss_conf 4999931565028999999999995027977999837986898478886620000789999885113-100022564057
Q gi|254780846|r 20 GVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMG-FSALIRYKFTLE 98 (324)
Q Consensus 20 ~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~G-id~vi~~~F~~~ 98 (324)
-|.|-|.||-+|.||..+|++|++.+..+-.+ +.-| +. .-.++. ..+.+.++|.++++++. +|.++. ++.
T Consensus 3 vv~~~G~FDllH~GHi~~l~~Ak~lgd~LiVg-v~sD--e~-~~~k~~--~Pi~~~~eR~~~l~~~k~VD~Vv~--~~~- 73 (129)
T cd02171 3 VVITYGTFDLFHIGHVRLLKRAKALGDKLIVG-VSTD--EF-NAGKGK--KAFYPYEQRAEILEAIRYVDLVIP--ETN- 73 (129)
T ss_pred EEEECCEECCCCHHHHHHHHHHHHHCCEEEEE-ECCH--HH-HHHCCC--CCCCCHHHHHHHHHCCCCCCEEEE--CCC-
T ss_conf 99992660789999999999999849989999-5335--99-985699--988899999999974998388980--899-
Q ss_pred HHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 752283026888621427802999834553033775560246775101264167615223023330230368999872
Q gi|254780846|r 99 TANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTK 176 (324)
Q Consensus 99 ~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~ 176 (324)
.++..+ .+ +++++..++.|.||. +....++++| ++..+| . . .-+|||.||+.|+.
T Consensus 74 -----~~~~~~-~i-~~~~~D~~v~G~D~~------~~~~~~~~~~-----~v~~~p-r-t---~giSTT~i~~~i~k 128 (129)
T cd02171 74 -----WEQKIE-DI-KKYNVDIFVMGDDWE------GKFDFLKEYC-----EVVYLP-R-T---EGISSTELKEMLKK 128 (129)
T ss_pred -----CCCCHH-HH-HHHCCCEEEECCCCC------CCCHHHHHCC-----EEEEEC-C-C---CCEEHHHHHHHHHH
T ss_conf -----523699-99-964979998787436------7405677098-----899978-9-9---98804999999960
No 13
>cd02170 cytidylyltransferase The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.01 E-value=2.4e-09 Score=81.64 Aligned_cols=132 Identities=19% Similarity=0.214 Sum_probs=85.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCHHH
Q ss_conf 499993156502899999999999502797799983798689847888662000078999988511-3100022564057
Q gi|254780846|r 20 GVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM-GFSALIRYKFTLE 98 (324)
Q Consensus 20 ~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~-Gid~vi~~~F~~~ 98 (324)
.|.|-|.||-+|.||..+|++|++.+..+- +.++-|..-. ..+.++ .+.+.++|.++++++ .+|.++. |+
T Consensus 3 ~V~~~G~FDl~H~GHi~~l~~Ak~~gd~Li-Vgv~sD~~v~---~~Kg~~-pi~~~~eR~~~l~~l~~VD~Vi~--~~-- 73 (136)
T cd02170 3 RVYVDGTFDLFHPGHIRALRQAKKLGDYLI-VGVHSDETIN---KHKGPP-PIMNEEERAEVVLACKYVDEVVL--GA-- 73 (136)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHCCCEEE-EEEECCHHHH---HHCCCC-CCCCHHHHHHHHHHCCCCCEEEE--CC--
T ss_conf 999922688688889999999998099899-9994776666---336998-87799999999985889877997--89--
Q ss_pred HHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 752283026888621427802999834553033775560246775101264167615223023330230368999872
Q gi|254780846|r 99 TANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTK 176 (324)
Q Consensus 99 ~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~ 176 (324)
.+++ .+.+ .+.+++..++.|.||..+.....-.+.++++ |. +..++ . ..-+|||.|++-|.+
T Consensus 74 --~~~~---~~~~-~~~~~~di~v~G~D~~~~~~~~~~~~~~k~~----G~-~~~~~--~---~~~~STT~Ii~rI~~ 135 (136)
T cd02170 74 --PYVV---TPEF-LEKLPIDIVVHGDDIKLDADGEDVYEELKEA----GG-FKEVK--R---TEGVSTTDIINRILK 135 (136)
T ss_pred --CCCH---HHHH-HHHCCCCEEEECCCCCCCCCCHHHHHHHHHC----CE-EEEEC--C---CCCCCHHHHHHHHHC
T ss_conf --9965---7999-9885997999788667775320099999969----96-99964--8---999468999999953
No 14
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=98.93 E-value=2.2e-09 Score=81.90 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=81.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC----CCCC-CCCCC
Q ss_conf 499993156502899999999999502797799983798689847888662000078999988511----3100-02256
Q gi|254780846|r 20 GVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM----GFSA-LIRYK 94 (324)
Q Consensus 20 ~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~----Gid~-vi~~~ 94 (324)
.|+.=|.||-+|.||+.||+.|...++..- +-+|-| ++....+ ...+.+.++|...+.++ +.+. +-+.+
T Consensus 6 ~v~vgGtFD~lH~GH~~ll~~a~~~~~~l~-vgvtsd----~~~~~kk-~~~i~p~e~R~~~v~~fl~~~~~~~~~~i~~ 79 (155)
T PRK00777 6 KVVVGGTFDPLHDGHRKLLRKAFELGKRVL-IGLTSD----EFAKTYK-KHKVRPYEVRLKNLKKFLDSLGAPERYEIMK 79 (155)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCEEE-EEECCH----HHHHHCC-CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 999906047679889999999998099899-998779----9998548-7767899999999999999709997679999
Q ss_pred CHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCC---CEEEECCHHHCCCCCCCCHHHHH
Q ss_conf 405775228302688862142780299983455303377556024677510126---41676152230233302303689
Q gi|254780846|r 95 FTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYG---FHTVFIDELRNNKSQIVSSSNIR 171 (324)
Q Consensus 95 F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g---~~v~~i~~~~~~~~~~ISSt~IR 171 (324)
.+ +.|=.. ..+ .+..|||..+-..| ...+.+..++.| .++++|+-+...+|.+||||+||
T Consensus 80 i~--------D~~Gpa-~~~--~~daIVVS~ET~~g------~~~IN~~R~e~GL~pL~I~~V~~v~~~dg~~iSST~IR 142 (155)
T PRK00777 80 IN--------DPYGPA-LED--DFDAIVVSPETYPV------ALEINEIRRERGLRPLEIVVIDFVMAEDGRPISSTRIR 142 (155)
T ss_pred EC--------CCCCCC-CCC--CCCEEEECHHHHCC------HHHHHHHHHHCCCCCEEEEEEEEEECCCCCEECHHHHH
T ss_conf 25--------898986-778--88789971656205------79998999988998348999877888999871589986
Q ss_pred HHH
Q ss_conf 998
Q gi|254780846|r 172 TAL 174 (324)
Q Consensus 172 ~~l 174 (324)
+-.
T Consensus 143 ~ge 145 (155)
T PRK00777 143 RGE 145 (155)
T ss_pred HHC
T ss_conf 232
No 15
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=98.86 E-value=1.6e-09 Score=82.77 Aligned_cols=247 Identities=15% Similarity=0.134 Sum_probs=125.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 99931565028999999999995027977999837986898478886620000789999885113100022564057752
Q gi|254780846|r 22 VAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETAN 101 (324)
Q Consensus 22 vtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ 101 (324)
|.=|+||=+|.||++||++|.+.++..-. =+|-| ++..+.+.. .+.+.++|...|.++=-++ ..+| ++..
T Consensus 4 vVGGTFD~lH~GHkaLL~~Af~~g~~V~I-GLTSD----e~A~k~k~~-~v~pfe~R~~~L~~~l~~~--~~~y--eI~~ 73 (328)
T PRK01170 4 VVGGTFSKLHKGHKALLRTAISTGNELVI-GLTSD----EYVKKNKVY-PAIPYEKRYRELYNYMSKY--TNKF--RIRP 73 (328)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCEEEE-EECCH----HHHHHCCCC-CCCCHHHHHHHHHHHHHHC--CCCE--EEEE
T ss_conf 67326775165899999999960896899-96778----999756988-6799899999999999846--8816--9999
Q ss_pred CCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCC---CEEEECCHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 28302688862142780299983455303377556024677510126---416761522302333023036899987258
Q gi|254780846|r 102 YSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYG---FHTVFIDELRNNKSQIVSSSNIRTALTKGH 178 (324)
Q Consensus 102 ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g---~~v~~i~~~~~~~~~~ISSt~IR~~l~~Gd 178 (324)
|+ +.|=... ..-.+..|||..+-.= +...+.+.-.+.| .+++++|-+..++|.+||||||| +|+
T Consensus 74 L~-D~yGpA~--~e~d~DaIVVSpET~~------~a~kINeiR~e~GL~PLeIIvVp~VlAeDG~pISSTRIr----~GE 140 (328)
T PRK01170 74 ID-DRNGNAP--YENDYERIVVSPETYL------RSLKINEIRIENGLPPLKIIRVPYVLAEDLFPISSTRII----NGE 140 (328)
T ss_pred EC-CCCCCCC--CCCCCCEEEECHHHHH------HHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCHHHEE----CCC
T ss_conf 15-8988988--6788888998772767------799999999977999807999755884789711144222----575
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCC-CEEEEEEEEEE-HH--CCCC---------CCHHHHEEEEEE-EECCCCCHHCCC
Q ss_conf 9999985000000000122100201-10111112110-00--0222---------310110002476-305656211057
Q gi|254780846|r 179 VLNAAHLLGYRFTIESDVIHGEKIG-RTLGFPTANMQ-LS--PDIL---------LKEGVYAIRFRT-QDQTSYSGVANF 244 (324)
Q Consensus 179 i~~an~lLGr~y~i~G~Vv~G~~~G-r~lGfPTaNi~-~~--~~~~---------p~~GVY~~~v~~-~~~~~~~~v~ni 244 (324)
|+. ||+.+- -+++..|-|=. .. ...+ .+.--|-..... .++....+++|=
T Consensus 141 ID~----------------~Gk~~~~~k~~~~~~n~~k~~a~~~~~~~~~~~~~~~~~~~~~~~~~qp~~~~t~~~a~~r 204 (328)
T PRK01170 141 IDK----------------NGKRKKPIKVSISTGNDAKERALKVFLSNLMKNFRVTRNSDYKLETQQPFGEDTMRFATER 204 (328)
T ss_pred CCC----------------CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 077----------------7762475589854798688899999999986430202275444568998860889899999
Q ss_pred CCCCCCCCCCCEEEEEEEE--CCCCCCCCCEEEEEEEEECC----CCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8997267797149999940--67855189889999460000----887468989999999997999999
Q gi|254780846|r 245 GRNPTMVPNGPLLLESFIF--DFSQEIYGQRCTVSFFDYLR----PEIKFKDIEKLKIYMGEDEKKARK 307 (324)
Q Consensus 245 G~~PT~~~~~~~~iE~hil--df~~dlYg~~i~v~f~~~iR----~e~kF~s~~~L~~qI~~D~~~a~~ 307 (324)
-.+.-=+.+-.+-+|+-|+ -|+.--|+-...+..-.|=| --.-|+=-+.....|+++.+....
T Consensus 205 a~~~~~d~d~svgie~gl~~~~~~~~y~d~~~~~v~dr~~~~t~G~s~GFe~P~~vv~~v~~g~ev~~~ 273 (328)
T PRK01170 205 AMSGLKDNDYSVGIESGIYYEKFSDKYYDVHYCVVIDRFGNVTRGYSSGFEIPDKIVDYIKRDMSFSAA 273 (328)
T ss_pred HHHHHCCCCEEEEECCCEEEEECCCCCEEEEEEEEEECCCCEEECCCCCCCCCHHHHHHHHCCCCHHHH
T ss_conf 986503476223220214545213540358999999568857734688876888999999758768898
No 16
>cd00560 PanC PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=98.81 E-value=1.4e-08 Score=76.61 Aligned_cols=169 Identities=20% Similarity=0.244 Sum_probs=105.6
Q ss_pred CEEECCCCCCCCCCCCC---C---CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCH
Q ss_conf 94224885211276101---8---84999931565028999999999995027977999837986898478886620000
Q gi|254780846|r 1 MHVFHNIEINQSLPNHL---K---GGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSP 74 (324)
Q Consensus 1 Mki~~~~~~~~~~p~~~---~---~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~ 74 (324)
|+|++++..-...-... . +.|-|+|+ +|.||..|++++.+.+ ..+|+|.--+|..|-.++.-..+-.+
T Consensus 1 M~ii~~~~el~~~~~~~r~~~~~ig~VPTMGa---LH~GHlsLi~~A~~~~---d~vvvSIFVNP~QF~~~eD~~~YPr~ 74 (276)
T cd00560 1 MKIIKSISELRKWLRNLRAEGKSIGFVPTMGA---LHEGHLSLIKRAKKEN---DKVVVSIFVNPTQFGPKEDLDNYPRT 74 (276)
T ss_pred CEEECCHHHHHHHHHHHHHCCCEEEEECCCCH---HHHHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCHHHHHCCCC
T ss_conf 96675699999999999975990999738622---6589999999999859---92899984471026985023208997
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHH------CCCHH-------------H------HHHHHCCCCCEEEEEECCCCCC
Q ss_conf 789999885113100022564057752------28302-------------6------8886214278029998345530
Q gi|254780846|r 75 PSIQEKILEKMGFSALIRYKFTLETAN------YSAEQ-------------F------IQKVLVEWLEVKTVITGTKFRF 129 (324)
Q Consensus 75 ~~~k~~~l~~~Gid~vi~~~F~~~~a~------ls~e~-------------F------i~~iL~~~l~~k~ivVG~Df~F 129 (324)
++.-+++|++.|+|.++...-+ ++.. .++.. | +.+ |.+..++...+ |
T Consensus 75 ~~~D~~~l~~~gvd~vF~P~~~-emYp~~~~~~v~~~~l~~~LeG~~RPgHF~GV~TVV~k-Lf~iv~P~~a~------F 146 (276)
T cd00560 75 LEADLKLLEKAGVDAVFAPSVE-EMYPNGLSTKVTVGKLSKILCGASRPGHFDGVATVVNK-LFNIVQPDRAY------F 146 (276)
T ss_pred HHHHHHHHHHCCCCEEECCCHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHHCCCCEEE------E
T ss_conf 7899999997699899768789-83789863302787401013688786077799999999-99845875788------6
Q ss_pred CCCCCCCHHHHHHHHHCCC--CEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 3377556024677510126--4167615223023330230368999872589999985
Q gi|254780846|r 130 GKDRAGDRGILQKRGEKYG--FHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHL 185 (324)
Q Consensus 130 G~~r~Gd~~~L~~~~~~~g--~~v~~i~~~~~~~~~~ISSt~IR~~l~~Gdi~~an~l 185 (324)
|.+----...++++.+.++ ++++.+|.++..+|-..||.+. +|..-+-+.|..+
T Consensus 147 GeKD~QQl~iIk~mv~dl~~~i~Ii~~ptvRe~dGLA~SSRN~--~Ls~~er~~A~~i 202 (276)
T cd00560 147 GEKDYQQLAVIRRMVRDLNLPIEIIGCPTVREEDGLALSSRNV--YLSKEERKKALKL 202 (276)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCEEEECCHH--HCCHHHHHHHHHH
T ss_conf 2310899999999999838987599605177689845500414--3799999999999
No 17
>pfam02569 Pantoate_ligase Pantoate-beta-alanine ligase. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyses the formation of pantothenate from pantoate and alanine.
Probab=98.79 E-value=2.1e-08 Score=75.43 Aligned_cols=168 Identities=20% Similarity=0.237 Sum_probs=108.6
Q ss_pred CEEECCCCCCCCCCCCC---C---CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCH
Q ss_conf 94224885211276101---8---84999931565028999999999995027977999837986898478886620000
Q gi|254780846|r 1 MHVFHNIEINQSLPNHL---K---GGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSP 74 (324)
Q Consensus 1 Mki~~~~~~~~~~p~~~---~---~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~ 74 (324)
|+|+++++..+..-... . +.|-|+| ++|.||..|++++++. ...+|+|.--+|..|-.++.-..+-.+
T Consensus 1 M~ii~~~~el~~~~~~~~~~~~~i~~VPTMG---aLH~GHlsLI~~A~~~---~~~vivSIFVNP~QF~~~eD~~~YPr~ 74 (280)
T pfam02569 1 MRIFTTIEDLRQFRKELREEGKRIGFVPTMG---ALHEGHLSLIDRARKE---NDVVVVSIFVNPTQFGPNEDLDAYPRT 74 (280)
T ss_pred CEEECCHHHHHHHHHHHHHCCCCEEEECCCC---HHHHHHHHHHHHHHHH---CCEEEEEEEECCCCCCCCCHHHHCCCC
T ss_conf 9567559999999999997499099984873---1658999999999975---991999996163136986304327998
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHH------CC--------------CHHH------HHHHHCCCCCEEEEEEC-CCC
Q ss_conf 789999885113100022564057752------28--------------3026------88862142780299983-455
Q gi|254780846|r 75 PSIQEKILEKMGFSALIRYKFTLETAN------YS--------------AEQF------IQKVLVEWLEVKTVITG-TKF 127 (324)
Q Consensus 75 ~~~k~~~l~~~Gid~vi~~~F~~~~a~------ls--------------~e~F------i~~iL~~~l~~k~ivVG-~Df 127 (324)
.+.-+++|++.|+|.++....+ ++-. .. |..| +.+ |.+-.++...+.| .||
T Consensus 75 ~~~D~~ll~~~~vD~vF~P~~~-eiyp~~~~~~~~~~~~l~~~LeG~~RPgHF~GV~tVV~k-Lf~ii~P~~a~fGeKD~ 152 (280)
T pfam02569 75 LERDLALLEKEGVDIVFAPSVH-EMYPQGIETTVEVQKGLSKVLEGASRPGHFRGVATVVTK-LFNIVQPDRAYFGEKDA 152 (280)
T ss_pred HHHHHHHHHHCCCCEEECCCHH-HCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHHCCCCEEEEECCHH
T ss_conf 7999999998699899778788-708988853784386633114688884178899999999-99860766457501059
Q ss_pred CCCCCCCCCHHHHHHHHHCCC--CEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 303377556024677510126--4167615223023330230368999872589999985
Q gi|254780846|r 128 RFGKDRAGDRGILQKRGEKYG--FHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHL 185 (324)
Q Consensus 128 ~FG~~r~Gd~~~L~~~~~~~g--~~v~~i~~~~~~~~~~ISSt~IR~~l~~Gdi~~an~l 185 (324)
. -...++++.+.++ ++++.+|.++..+|-..||.+- +|..-+.+.|..+
T Consensus 153 Q-------Ql~iIk~~v~~~~~~i~Ii~~pTvRe~~GLAlSSRN~--~Ls~~~r~~A~~i 203 (280)
T pfam02569 153 Q-------QLAVIRQLVADLNLDIEIVPVPIVREEDGLALSSRNV--YLTPEQRKIALAL 203 (280)
T ss_pred H-------HHHHHHHHHHHHCCCCEEEEECCEECCCCEEEECCCH--HCCHHHHHHHHHH
T ss_conf 9-------9999999999848993699606177799836502522--2699999999999
No 18
>cd02174 CCT CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures . A current model posits that bilayer curvature elastic stress is sensed by CCT and governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=98.76 E-value=2.9e-07 Score=68.12 Aligned_cols=132 Identities=15% Similarity=0.176 Sum_probs=84.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEE-EEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCHHH
Q ss_conf 9999315650289999999999950279779-99837986898478886620000789999885113-100022564057
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPIT-VLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMG-FSALIRYKFTLE 98 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~-viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~G-id~vi~~~F~~~ 98 (324)
|.|=|.||=+|.||..+|++|++..+...++ -++-|.. +...+.+ .+.+.++|.++++++. +|.++. .++-
T Consensus 5 Vy~~G~FDLlH~GHi~~L~~Ak~lG~~d~LIVGv~sD~~---v~~~Kg~--PI~~~~eR~~~v~~lk~VD~Vi~--~~p~ 77 (150)
T cd02174 5 VYVDGCFDLFHYGHANALRQAKALGPNDYLIVGVHSDEE---IHKHKGP--PVMTEEERYEAVRACKWVDEVVE--GAPY 77 (150)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCHH---HHHCCCC--CCCCHHHHHHHHHCCCCCCEEEC--CCCC
T ss_conf 998336866898899999999971999889999857867---8745999--86889999999970888789968--9986
Q ss_pred HHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 7522830268886214278029998345530337755602467751012641676152230233302303689998725
Q gi|254780846|r 99 TANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177 (324)
Q Consensus 99 ~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~G 177 (324)
...++|++ ++++..++.|.|+....+...-...+++ .| .+..++- .+-+|||.|.+-|.+.
T Consensus 78 ---~~~~~~i~-----k~~~D~vv~G~d~~~~~~~~~~~~~~k~----~G-~~~~~~~-----t~giSTT~iI~rIl~~ 138 (150)
T cd02174 78 ---VTTPEFLD-----KYKCDYVAHGDDIYLDADGEDCYAEVKD----AG-RFKEVKR-----TEGVSTTDLIGRILLD 138 (150)
T ss_pred ---CCCHHHHH-----HHCCCEEEECCCCCCCCCCCCHHHHHHH----CC-EEEEECC-----CCCCCHHHHHHHHHHH
T ss_conf ---46989997-----6189999989925358873338899984----99-9999289-----8990789999999998
No 19
>cd02164 PPAT_CoAS The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalysed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present , and this was subsequently confirmed on identification of the bacterial PPAT/coaD.
Probab=98.72 E-value=1.2e-08 Score=77.19 Aligned_cols=135 Identities=17% Similarity=0.239 Sum_probs=78.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHC
Q ss_conf 99315650289999999999950279779998379868984788866200007899998851131000225640577522
Q gi|254780846|r 23 AIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANY 102 (324)
Q Consensus 23 tiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~l 102 (324)
.=|+||-+|.||+.||..|...|.+.-.+-+|=| .++.++.....+.+.++|.+.+.++=-+.--...+ ++..+
T Consensus 3 vGGTFD~lH~GHk~LL~~A~~~~~~~l~IGvTsd----~ll~~K~~~~~i~~~~~R~~~v~~fl~~~~~~~~~--~i~~l 76 (142)
T cd02164 3 LGGTFDRLHDGHKILLSVAFLLAGEKLVIGVTDD----ELLKNKSYKELIEPYEERIRDLHEFLKDLKPTLKY--EIVPI 76 (142)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCH----HHHHCCCCCHHCCCHHHHHHHHHHHHHHHCCCCEE--EEEEE
T ss_conf 5055774277999999999983799899998877----88751577400589999999999999971999638--99991
Q ss_pred CCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCC---CEEEECCHHHCC-CCCCCCHHHHHH
Q ss_conf 8302688862142780299983455303377556024677510126---416761522302-333023036899
Q gi|254780846|r 103 SAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYG---FHTVFIDELRNN-KSQIVSSSNIRT 172 (324)
Q Consensus 103 s~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g---~~v~~i~~~~~~-~~~~ISSt~IR~ 172 (324)
+ +.|=.. .. ...+..|||-.+..=| ...+.+.-++.| .++++|+-+... ++.+||||+||+
T Consensus 77 ~-D~~Gpa-~~-~~d~daiVVS~ET~~g------~~~IN~~R~e~GL~pL~I~~v~~v~~~~dg~kISST~IR~ 141 (142)
T cd02164 77 D-DPYGPT-IT-DPDLEAIVVSPETYKG------GLKINRRRAENGLAPLEIVVIPLVSAEGDETKISSTRIRR 141 (142)
T ss_pred C-CCCCCC-CC-CCCCCEEEECHHHHHH------HHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEECHHHHCC
T ss_conf 5-898988-77-7887789986889767------8999999998799845999997586278997465234207
No 20
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase; InterPro: IPR006409 These sequences describe glycerol-3-phosphate cytidyltransferase, also called CDP-glycerol pyrophosphorylase. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase (2.7.7.14 from EC). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.; GO: 0046872 metal ion binding, 0047348 glycerol-3-phosphate cytidylyltransferase activity, 0019350 teichoic acid biosynthetic process, 0005737 cytoplasm.
Probab=98.64 E-value=6.4e-08 Score=72.32 Aligned_cols=124 Identities=18% Similarity=0.293 Sum_probs=85.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCHHHH
Q ss_conf 99993156502899999999999502797799983798689847888662000078999988511-31000225640577
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM-GFSALIRYKFTLET 99 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~-Gid~vi~~~F~~~~ 99 (324)
|+|.|+||=+|-||-.|+++|++.+..+- |.++-| + |+-++.-.--.+.+.|-.+|+.. -+|.|+.-
T Consensus 1 vl~~GTFDlLH~gHi~lL~~AK~~G~~Li-V~lSTD----~-FN~~K~K~ay~~Ye~RK~~LE~IRYVD~ViPE------ 68 (126)
T TIGR01518 1 VLTYGTFDLLHYGHINLLKKAKQLGDYLI-VALSTD----E-FNLEKKKKAYQSYEKRKLVLESIRYVDLVIPE------ 68 (126)
T ss_pred CEECCHHHHHHHHHHHHHHHHHHCCCEEE-EEEECC----H-HHCCCCCCCCCCHHHHHHHHHHHHHHCEECCC------
T ss_conf 91204055666899999999862576588-886222----1-20015753323534656666543322000379------
Q ss_pred HHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHH
Q ss_conf 52283026888621427802999834553033775560246775101264167615223023330230368999
Q gi|254780846|r 100 ANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTA 173 (324)
Q Consensus 100 a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~ 173 (324)
.|.++=...| ...++..++.|.|| +|..++|+.-+.. .+|...| .++.||||.|++-
T Consensus 69 --~~W~~K~~~I--~~f~iD~~vMGDDW------~G~FDFL~~~~~n--~~v~YlP-----Rt~~vS~~~IK~E 125 (126)
T TIGR01518 69 --KSWDQKSLDI--AEFDIDVFVMGDDW------KGKFDFLKEEFTN--LKVLYLP-----RTKEVSTTKIKKE 125 (126)
T ss_pred --CCHHHHHHHH--HHCCCCEEEECCCC------CCCCCHHHCCCCC--CEEEECC-----CCCCCCCCCCCCC
T ss_conf --8834567667--65177558864778------8821011103776--3588727-----8998551000103
No 21
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=98.58 E-value=6.5e-07 Score=65.78 Aligned_cols=133 Identities=21% Similarity=0.248 Sum_probs=87.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCHHHH
Q ss_conf 999931565028999999999995027977999837986898478886620000789999885113-1000225640577
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMG-FSALIRYKFTLET 99 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~G-id~vi~~~F~~~~ 99 (324)
|.|=|.||=+|.||...|++|++..+.+ .+++. +.+..........+.+.++|.+.++++. +|.++.-
T Consensus 4 V~~~GtFDilH~GHi~~L~~Ak~lGd~l-iVv~a----~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~------ 72 (140)
T COG0615 4 VWADGTFDILHPGHIEFLRQAKKLGDEL-IVVVA----RDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILG------ 72 (140)
T ss_pred EEEEEEEEEECHHHHHHHHHHHHHCCEE-EEEEE----CCHHHHHHCCCCCCCCHHHHHHHHHCCCCHHEEEEC------
T ss_conf 9980389985665999999999858969-99996----457888850899988889999999727625404208------
Q ss_pred HHCCCHHH-HHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHH
Q ss_conf 52283026-88862142780299983455303377556024677510126416761522302333023036899987
Q gi|254780846|r 100 ANYSAEQF-IQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALT 175 (324)
Q Consensus 100 a~ls~e~F-i~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~ 175 (324)
.|.++ .+. + +.+++..++.|.|.. ++.+.|+..+.+.|..+.++-.-.......+|||-|.+.+.
T Consensus 73 ---~p~~~~~~~-i-~~~k~Div~lG~D~~------~d~~~l~~~~~k~G~~~~v~R~~g~~~~~~~st~~i~~~i~ 138 (140)
T COG0615 73 ---APWDIKFED-I-EEYKPDIVVLGDDQK------FDEDDLKYELVKRGLFVEVKRTEGVSTCELISTSDIIKRIL 138 (140)
T ss_pred ---CCCCCCHHH-H-HHHCCCEEEECCCCC------CCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf ---965467689-9-995999999779876------77689999999769825898415745676456488999986
No 22
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=98.58 E-value=1.9e-07 Score=69.29 Aligned_cols=150 Identities=17% Similarity=0.197 Sum_probs=94.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 49999315650289999999999950279779998379868984788866200007899998851131000225640577
Q gi|254780846|r 20 GVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLET 99 (324)
Q Consensus 20 ~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~~ 99 (324)
.|-|+| ++|.||..|++++++. ...+|+|.--+|..|-.++.-..+-.+.+.-+++|++.|+|.++...-+ ++
T Consensus 25 ~VPTMG---aLH~GHlsLI~~A~~~---~d~vvVSIFVNP~QF~~~eD~~~YPr~~e~D~~~l~~~gvD~vF~P~~~-ei 97 (283)
T PRK00380 25 FVPTMG---NLHEGHLSLVREARAE---ADVVVVSIFVNPLQFGPNEDLDRYPRTLEADLAKLEAAGVDLVFAPSVE-EM 97 (283)
T ss_pred EECCCC---HHHHHHHHHHHHHHHH---CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCHH-HH
T ss_conf 985872---2758999999999974---9929999850601059875401289878999999998699899788789-81
Q ss_pred H--HCCCHHH-------------------------HHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCC--CE
Q ss_conf 5--2283026-------------------------88862142780299983455303377556024677510126--41
Q gi|254780846|r 100 A--NYSAEQF-------------------------IQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYG--FH 150 (324)
Q Consensus 100 a--~ls~e~F-------------------------i~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g--~~ 150 (324)
. ..++..+ +.+ |.+..++...+ ||.+----...++++.+.++ ++
T Consensus 98 Yp~~~~~~~~v~~~~l~~~LeG~~RPgHF~GV~TVV~k-Lf~ii~P~~a~------FGeKD~QQl~iIk~mv~dl~~~i~ 170 (283)
T PRK00380 98 YPEGLEQQTYVDVPGLSDVLEGASRPGHFDGVATVVTK-LFNIVQPDVAY------FGEKDYQQLAVIRRMVRDLNLPVE 170 (283)
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHHCCCCEEE------ECCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 78999872587377644235788684078799999999-99860875788------623108999999999998689972
Q ss_pred EEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 67615223023330230368999872589999985
Q gi|254780846|r 151 TVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHL 185 (324)
Q Consensus 151 v~~i~~~~~~~~~~ISSt~IR~~l~~Gdi~~an~l 185 (324)
++.+|.++..+|-..||.+. +|..-+-+.|..+
T Consensus 171 Ii~~ptvRe~dGLA~SSRN~--~Ls~~~r~~A~~i 203 (283)
T PRK00380 171 IVGVPTVREADGLALSSRNV--YLSAEERKEAPAL 203 (283)
T ss_pred EEECCCEECCCCCEEECCCH--HCCHHHHHHHHHH
T ss_conf 88557577799833320102--0799999999999
No 23
>cd02167 NMNAT_NadR The NMNAT domain of NadR protein. The NadR protein (hiNadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=98.55 E-value=4.1e-07 Score=67.08 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=75.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCC--CCCCCCCCCHH--
Q ss_conf 99931565028999999999995027977999837986898478886620000789999885113--10002256405--
Q gi|254780846|r 22 VAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMG--FSALIRYKFTL-- 97 (324)
Q Consensus 22 vtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~G--id~vi~~~F~~-- 97 (324)
+.+|.|+-+|+||+.||++|.+..++.-.+ ++-.|. .....-.+.+.|.+.|++.= .+.+.+..+++
T Consensus 2 lv~GkF~P~H~GH~~lI~~A~~~~d~l~Vv-v~~~~~--------~~~~~~i~~~~R~rWl~~~f~~~~~i~v~~~~e~~ 72 (157)
T cd02167 2 LVFGKFAPLHTGHQYLIYTAAAQVDELHVI-VSGDPE--------EDGQIGITLEDRLRWLREAFPDQEQILVHTLNEND 72 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCEEEEE-EECCCC--------CCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 552464799737899999999868969999-847886--------55566899999999999977999879998636778
Q ss_pred -----HHHHCCCHHHHHHHHCC-CC--CEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHH
Q ss_conf -----77522830268886214-27--80299983455303377556024677510126416761522302333023036
Q gi|254780846|r 98 -----ETANYSAEQFIQKVLVE-WL--EVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSN 169 (324)
Q Consensus 98 -----~~a~ls~e~Fi~~iL~~-~l--~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~ 169 (324)
.....- .+.+..++.+ .+ .+..++.++++- + ...+ ..+.+|.+...+++-+. .-+||+|.
T Consensus 73 ~p~~p~~w~~w-~~~~~~~~~~~~~~~~~d~VF~se~y~--~-----~~~~--~~~~~gae~v~vD~~R~--~~pISgT~ 140 (157)
T cd02167 73 IPEYPDGWDIW-ANRIKLLHLENILLPRPTIVFYAEEYD--A-----AQEL--IAKALGAQVVLVDCDRT--VFPISATQ 140 (157)
T ss_pred CCCCCCCHHHH-HHHHHHHHHHHCCCCCCCEEEECCCCC--C-----CHHH--HHHCCCCEEEEECCCCC--CCCCCHHH
T ss_conf 98899707999-999999988621488986899768767--4-----1478--98637988999787755--28814999
Q ss_pred HHHHH
Q ss_conf 89998
Q gi|254780846|r 170 IRTAL 174 (324)
Q Consensus 170 IR~~l 174 (324)
||+-.
T Consensus 141 IR~dP 145 (157)
T cd02167 141 IRTDP 145 (157)
T ss_pred HHHCH
T ss_conf 98799
No 24
>cd02163 PPAT_a Phosphopantetheine adenylyltransferase (PPAT) is an essential enzyme in bacteria that catalyses a rate-limiting step in coenzyme A (CoA) biosynthesis, by transferring an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA). Each phosphopantetheine adenylyltransferase (PPAT) subunit displays a dinucleotide-binding fold that is structurally similar to that in class I aminoacyl-tRNA synthetases. Superposition of bound adenylyl moieties from dPCoA in PPAT and ATP in aminoacyl-tRNA synthetases suggests nucleophilic attack by the 4'-phosphopantetheine on the -phosphate of ATP. The proposed catalytic mechanism implicates transition state stabilization by PPAT without involving functional groups of the enzyme in a chemical sense in the reaction. The homologous active site attachment of ATP and the structural distribution of predicted sequence-binding motifs in PPAT classify the enzyme as belonging to the nucleotidyltransferase superfamily.
Probab=98.49 E-value=4.1e-07 Score=67.10 Aligned_cols=130 Identities=18% Similarity=0.275 Sum_probs=78.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCCCCHHHH
Q ss_conf 9993156502899999999999502797799983798689847888662000078999988511--31000225640577
Q gi|254780846|r 22 VAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM--GFSALIRYKFTLET 99 (324)
Q Consensus 22 vtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~--Gid~vi~~~F~~~~ 99 (324)
+--|.||-+|.||..+++++.+.-...- +++.- ++.+. .+.+.++|.+++++. ..+.+-+..|+
T Consensus 2 ifpGSFDP~t~GHldii~ra~~lFD~vi-i~i~~--------N~~K~--~~f~~~eR~~~i~~~~~~~~nV~V~~~~--- 67 (152)
T cd02163 2 VYPGSFDPITNGHLDIIERASRLFDEVI-VAVAV--------NPSKK--PLFSLEERVELIREATKHLPNVEVVGFD--- 67 (152)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCEEE-EEEEC--------CCCCC--CCCCHHHHHHHHHHHHCCCCCEEEEEEC---
T ss_conf 0786779884009999999998789899-99622--------88767--6689999999999974589987999967---
Q ss_pred HHCCCHHHHHHHHCCCCCEEEEEEC----CCCCCCCCCCCCHHHHHH-HHHCCCCEEEECCHHHCCCCCCCCHHHHHHHH
Q ss_conf 5228302688862142780299983----455303377556024677-51012641676152230233302303689998
Q gi|254780846|r 100 ANYSAEQFIQKVLVEWLEVKTVITG----TKFRFGKDRAGDRGILQK-RGEKYGFHTVFIDELRNNKSQIVSSSNIRTAL 174 (324)
Q Consensus 100 a~ls~e~Fi~~iL~~~l~~k~ivVG----~Df~FG~~r~Gd~~~L~~-~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l 174 (324)
.+.-++ .++.++..|+-| .||.+=. ..+.+.+ ++ .+++++.+.+ ..+-.-||||.||+++
T Consensus 68 ------gl~vd~-ak~~~a~~ivRGlR~~~DfeyE~----~~a~~Nr~L~--~~IeTvfl~~--~~~~~~ISSs~VRel~ 132 (152)
T cd02163 68 ------GLLVDF-ARKVGANVIVRGLRAVSDFEYEF----QMAGMNRKLA--PEIETVFLMA--SPEYSFISSSLVKEVA 132 (152)
T ss_pred ------CHHHHH-HHHCCCEEEEECCCCHHHHHHHH----HHHHHHHHHC--CCCCEEEEEC--CCCCCEEEHHHHHHHH
T ss_conf ------669999-99769829996586404889999----9999999608--9986899847--9666576189999999
Q ss_pred H-HHHHH
Q ss_conf 7-25899
Q gi|254780846|r 175 T-KGHVL 180 (324)
Q Consensus 175 ~-~Gdi~ 180 (324)
. .||++
T Consensus 133 ~~ggdi~ 139 (152)
T cd02163 133 SLGGDVS 139 (152)
T ss_pred HCCCCHH
T ss_conf 8399944
No 25
>pfam08218 Citrate_ly_lig Citrate lyase ligase C-terminal domain. This family is composed of the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=98.48 E-value=7.1e-07 Score=65.56 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=97.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCCC---------
Q ss_conf 156502899999999999502797799983798689847888662000078999988511--310002256---------
Q gi|254780846|r 26 NFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM--GFSALIRYK--------- 94 (324)
Q Consensus 26 ~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~--Gid~vi~~~--------- 94 (324)
|=.-+++|||.|+++|-+.....-.-|+ ..+. .+.+.++|.++.++- .++++.+++
T Consensus 7 NaNPFT~GH~yLvE~Aa~~~d~l~vFVV----------~eD~---S~F~~~~R~~LV~~G~~~l~NV~v~~g~~YiIS~a 73 (182)
T pfam08218 7 NANPFTLGHRYLVEQAAAENDWVHLFVV----------SEDA---SLFSYEERFALVKQGTKDLDNVTVHSGGDYIISRA 73 (182)
T ss_pred CCCCCCCHHHHHHHHHHHHCCEEEEEEE----------ECCC---CCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEEEE
T ss_conf 0798853689999999974998999998----------3556---73889999999999755588869955998789710
Q ss_pred -C-----------HHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCC
Q ss_conf -4-----------0577522830268886214278029998345530337755602467751012641676152230233
Q gi|254780846|r 95 -F-----------TLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKS 162 (324)
Q Consensus 95 -F-----------~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~ 162 (324)
| .+.-+.+++.-|-+ .+...|+...-.||+.=.----+.=| +.|+++-...|+++++|+-.. .++
T Consensus 74 TFP~YFlKd~~~v~~~~~~lD~~iF~~-~IApaL~It~RfVG~EP~~~vT~~YN-~~m~~~Lp~~~I~v~~i~R~~-~~~ 150 (182)
T pfam08218 74 TFPSYFIKEQDVVIKSQTTIDLRIFRE-YIAPALGITHRYVGEEPFSRVTAIYN-QAMQSELPPAGIEVVEIPRKE-YDG 150 (182)
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCEECCCCCCHHHHHHH-HHHHHHCCCCCCEEEEECCCC-CCC
T ss_conf 471555355689999999998999999-62265287633405898987799999-999986684694799952545-699
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3023036899987258999998500
Q gi|254780846|r 163 QIVSSSNIRTALTKGHVLNAAHLLG 187 (324)
Q Consensus 163 ~~ISSt~IR~~l~~Gdi~~an~lLG 187 (324)
++||.|++|++|++||++...+|.-
T Consensus 151 ~~ISAS~VR~~l~~~~~~~i~~lVP 175 (182)
T pfam08218 151 GPISASTVRQAIKEGNLEALAKLVP 175 (182)
T ss_pred CEECHHHHHHHHHCCCHHHHHHHCC
T ss_conf 6870999999998599999987388
No 26
>cd02165 NMNAT This family contains the predominant bacterial/eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT) is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and thus can participate in both de novo and salvage pathways of NAD synthesis.
Probab=98.46 E-value=2.7e-06 Score=61.82 Aligned_cols=143 Identities=20% Similarity=0.195 Sum_probs=73.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCE-EEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCCCCHHH
Q ss_conf 99931565028999999999995027977-99983798689847888662000078999988511--3100022564057
Q gi|254780846|r 22 VAIGNFDGIHLGHHLILEQAIKIANNSPI-TVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM--GFSALIRYKFTLE 98 (324)
Q Consensus 22 vtiG~FDGvH~GHq~Li~~~~~~a~~~~~-~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~--Gid~vi~~~F~~~ 98 (324)
+-=|.||-+|.||..+++.+.+.-.-... .+.+..| +.++. .+.+.++|.++++.+ +.+.+.+-++..+
T Consensus 2 ifgGSFdP~h~gH~~i~~~~~~~~~~d~v~~ip~~~~-------~~K~~-~~~~~~~R~~Ml~~a~~~~~~~~v~~~E~~ 73 (194)
T cd02165 2 LFGGSFNPPHNGHLALAEEAREQLGLDKVILLPSANP-------PHKKP-GLASAEHRLAMLELAIEGSPRFEVSDWEIE 73 (194)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCC-------CCCCC-CCCCHHHHHHHHHHHHHHCCCCEECHHHHH
T ss_conf 2456688475999999999999749998999980888-------56467-889999999999999975897643036663
Q ss_pred HHHCCC-HHHHHHHHCCCCCE--EEEEECCCCCCCCCCCCCHHHHHHHHH-----------------------CCCCEEE
Q ss_conf 752283-02688862142780--299983455303377556024677510-----------------------1264167
Q gi|254780846|r 99 TANYSA-EQFIQKVLVEWLEV--KTVITGTKFRFGKDRAGDRGILQKRGE-----------------------KYGFHTV 152 (324)
Q Consensus 99 ~a~ls~-e~Fi~~iL~~~l~~--k~ivVG~Df~FG~~r~Gd~~~L~~~~~-----------------------~~g~~v~ 152 (324)
-...+. -+-++. +.++..- -.+++|.|.--....=-+.+.|.+.+. .....+.
T Consensus 74 ~~~~s~t~~tl~~-l~~~~~~~~~~~iiG~D~l~~~~~W~~~~~i~~~~~~iv~~R~~~~~~~~~~~~~~~~~~~~~~i~ 152 (194)
T cd02165 74 RPGPSYTIDTLRH-LRERYPNAELYFLIGADLLENLPKWKDWEEILELVHLVVVPRPGYDIDSEILELDLLLKAPGGRIL 152 (194)
T ss_pred CCCCCCHHHHHHH-HHHHCCCCCEEEEECHHHHHCCCCCCCHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 7898708999999-986589870899725566640344117999996498999968999712445788987406787699
Q ss_pred ECCHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 6152230233302303689998725
Q gi|254780846|r 153 FIDELRNNKSQIVSSSNIRTALTKG 177 (324)
Q Consensus 153 ~i~~~~~~~~~~ISSt~IR~~l~~G 177 (324)
.++. ....||||.||+.+..|
T Consensus 153 ~~~~----~~~~ISST~IR~~i~~~ 173 (194)
T cd02165 153 LLDN----PPLDISSTKIREALARG 173 (194)
T ss_pred EECC----CCCCCCHHHHHHHHHCC
T ss_conf 9369----87771899999999859
No 27
>cd02158 PanC_ATPS PanC_ATPS Pantothenate synthetase (PanC) and ATP-sulfurylase (ATPS) share a similar dinucleotide-binding domain.
Probab=98.40 E-value=6.7e-07 Score=65.70 Aligned_cols=142 Identities=20% Similarity=0.184 Sum_probs=90.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 84999931565028999999999995027977999837986898478886620000789999885113100022564057
Q gi|254780846|r 19 GGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLE 98 (324)
Q Consensus 19 ~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~ 98 (324)
.++..+.+--.+|.||..|++++++. ...++++---+|..|-..+.-..+-.+.+.-+++|++.|+|.++..+.+ +
T Consensus 15 k~I~~VpTMG~LH~GHlsLi~~A~~~---~~~vvvsifVNp~QF~~~~D~~~YPr~~e~D~~ll~~~~vd~vf~P~~~-~ 90 (183)
T cd02158 15 KTIGAVPTMGPLHEGHLSLIKRAKKE---NDGVVVSIFVNPTQFGDKEDLDPYPRTLEADIALLEKYGVDILFAPPVE-E 90 (183)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCEEECCCHH-H
T ss_conf 76999808873769999999999863---9928999633787778601465479877889999997599899848788-8
Q ss_pred HH-H------------------CCCHHH------HHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCC--CCEE
Q ss_conf 75-2------------------283026------8886214278029998345530337755602467751012--6416
Q gi|254780846|r 99 TA-N------------------YSAEQF------IQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKY--GFHT 151 (324)
Q Consensus 99 ~a-~------------------ls~e~F------i~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~--g~~v 151 (324)
+- . +-|.-| +.+ |.+..++...+. |.+-....-.++++.+.+ ++++
T Consensus 91 ~yp~~~~~~~~~~~~~~~l~g~~Rpghf~GV~tvv~k-lfnii~P~~~~f------GeKD~QQl~~ik~lv~~~~~~i~i 163 (183)
T cd02158 91 MYPNGLETKITVGKLSKILCGAMRPGHFRGVATVVIK-LFNIGAPTHAIF------GRKDAQQLYVIQRLVKDLNLPIEI 163 (183)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHCCCCCEEEE------CCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 1788763312675324442435677503279999999-997053898886------331689999999999983999479
Q ss_pred EECCHHHCCCCCCCCHHHHH
Q ss_conf 76152230233302303689
Q gi|254780846|r 152 VFIDELRNNKSQIVSSSNIR 171 (324)
Q Consensus 152 ~~i~~~~~~~~~~ISSt~IR 171 (324)
+.++.++..+|..+||+++|
T Consensus 164 v~~ptvR~~~GLAlSSRN~r 183 (183)
T cd02158 164 VPCPTVRYCDGLALSSRNVR 183 (183)
T ss_pred EEECCEECCCCCCCCCCCCC
T ss_conf 96188699999710366688
No 28
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.39 E-value=1.9e-06 Score=62.73 Aligned_cols=141 Identities=20% Similarity=0.197 Sum_probs=69.8
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCCCCHHHHHH
Q ss_conf 93156502899999999999502797799983798689847888662000078999988511--3100022564057752
Q gi|254780846|r 24 IGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM--GFSALIRYKFTLETAN 101 (324)
Q Consensus 24 iG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~--Gid~vi~~~F~~~~a~ 101 (324)
=|.||-+|.||..+++.+.+...-.. +. |-|.|. ++.++ ..+.+.++|.++++.+ +.+.+.+-++. +..
T Consensus 8 gGSFdP~h~gH~~i~~~~~~~~~~d~-v~--~~p~~~---~~~K~-~~~~~~~~R~~Ml~~a~~~~~~~~v~~~E--~~~ 78 (200)
T PRK00071 8 GGTFDPPHYGHLAIAEEAAERLGLDE-VW--FLPNPG---PPHKP-RPLAPLEHRLAMLELAIADNPRFSVSDIE--LER 78 (200)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCE-EE--EEECCC---CCCCC-CCCCCHHHHHHHHHHHHHHCCCEEEEEEH--HHC
T ss_conf 76768574999999999999759998-99--998899---86656-77899999999999988758972786403--324
Q ss_pred CCCH---HHHHHHHCCCC-C-EEEEEECCCCCCCCCCCCCHHHHHHH-----------------------HHCCCCEEEE
Q ss_conf 2830---26888621427-8-02999834553033775560246775-----------------------1012641676
Q gi|254780846|r 102 YSAE---QFIQKVLVEWL-E-VKTVITGTKFRFGKDRAGDRGILQKR-----------------------GEKYGFHTVF 153 (324)
Q Consensus 102 ls~e---~Fi~~iL~~~l-~-~k~ivVG~Df~FG~~r~Gd~~~L~~~-----------------------~~~~g~~v~~ 153 (324)
-.+- +-++. +.+.. + --.+++|.|--..-..=-+.+.|-+. ....+-.+..
T Consensus 79 ~~~syt~~tl~~-l~~~~~~~~~~~iiG~D~l~~~~~W~~~~~il~~~~~iV~~R~g~~~~~~~~~~~~~~~~~~~~i~~ 157 (200)
T PRK00071 79 LGPSYTIDTLRE-LRARYPDVEFVFIIGADALAQLPRWKRWEEILSLVHFVVVPRPGYPEARLDEDPAALLARPGGPIWL 157 (200)
T ss_pred CCCCHHHHHHHH-HHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 676218999999-9987899747984070787651546459999964979999489985233455588874144882999
Q ss_pred CCHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1522302333023036899987258
Q gi|254780846|r 154 IDELRNNKSQIVSSSNIRTALTKGH 178 (324)
Q Consensus 154 i~~~~~~~~~~ISSt~IR~~l~~Gd 178 (324)
++ .. .-.||||.||+.+..|.
T Consensus 158 ~~-~~---~~~iSST~IR~~l~~g~ 178 (200)
T PRK00071 158 LD-VP---LLAISSTAIRERIKEGK 178 (200)
T ss_pred EC-CC---CCCCCHHHHHHHHHCCC
T ss_conf 56-98---77648999999998599
No 29
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II; InterPro: IPR011914 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. Domain I (IPR011913 from INTERPRO) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=98.39 E-value=1.5e-06 Score=63.45 Aligned_cols=130 Identities=19% Similarity=0.277 Sum_probs=92.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCC
Q ss_conf 1884999931565028999999999995027977999837986898478886620000789999885113-100022564
Q gi|254780846|r 17 LKGGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMG-FSALIRYKF 95 (324)
Q Consensus 17 ~~~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~G-id~vi~~~F 95 (324)
-++-|.|=|-||=+|.||-..|++|++..+-+-. -+--|..=+. ++. +...|.+.++|..+|+.+. +|+++ -|
T Consensus 10 g~kvVFTNGCFDiLH~GHV~YL~~Ar~LGD~LvV-GvNSD~SV~R-LKG--~~RPi~~e~~Ra~vLaaL~~VD~VV--~F 83 (144)
T TIGR02199 10 GKKVVFTNGCFDILHAGHVSYLQQARALGDRLVV-GVNSDASVKR-LKG--ETRPINSEEDRAEVLAALSSVDYVV--IF 83 (144)
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHCCEEEE-EECCHHHHHC-CCC--CCCCCCCHHHHHHHHHCCCCEEEEE--EC
T ss_conf 8977851773101021137689999971986689-8617045530-576--8989157767899984478500378--63
Q ss_pred HHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHH--HHHHCCCCEEEECCHHHCCCCCCCCHHHHHHH
Q ss_conf 0577522830268886214278029998345530337755602467--75101264167615223023330230368999
Q gi|254780846|r 96 TLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQ--KRGEKYGFHTVFIDELRNNKSQIVSSSNIRTA 173 (324)
Q Consensus 96 ~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~--~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~ 173 (324)
+ +=+|++=| ..++|.-+|=|=|| +.+.|- +.-++||-+|..++-. . + .|||.|=+=
T Consensus 84 ~----EDTP~~LI-----~~~~PdilVKGGDY--------~~~~~vg~~~V~~yGG~V~~l~f~-~--g--~STT~ii~k 141 (144)
T TIGR02199 84 D----EDTPEELI-----EELKPDILVKGGDY--------KLEELVGAELVESYGGQVVLLPFV-E--G--RSTTAIIEK 141 (144)
T ss_pred C----CCCHHHHH-----HHHCCCEEEECCCC--------CCCCCCCHHHHHHCCCEEEEEEEE-C--C--CCCHHHHHH
T ss_conf 8----98968999-----86296278504435--------855442448998629979898521-7--9--840789999
Q ss_pred H
Q ss_conf 8
Q gi|254780846|r 174 L 174 (324)
Q Consensus 174 l 174 (324)
+
T Consensus 142 i 142 (144)
T TIGR02199 142 I 142 (144)
T ss_pred H
T ss_conf 8
No 30
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=98.38 E-value=9.2e-07 Score=64.81 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=78.3
Q ss_pred EEEE-ECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC----CCCCCCCCCC
Q ss_conf 9999-3156502899999999999502797799983798689847888662000078999988511----3100022564
Q gi|254780846|r 21 VVAI-GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM----GFSALIRYKF 95 (324)
Q Consensus 21 vvti-G~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~----Gid~vi~~~F 95 (324)
.+++ |.||-+|.||++||+.|...+...-.+ +|-| ++.+.. ....+-+.+.|.+-|.++ ..|+-++.+-
T Consensus 7 ~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IG-lTsD----e~~k~~-k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i 80 (158)
T COG1019 7 KVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIG-LTSD----ELAKKK-KKEKIEPYEVRLRNLRNFLESIKADYEEIVPI 80 (158)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHCCEEEEE-ECCH----HHHHHH-CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 88841335055424999999999857917999-7648----999872-22567748999999999999846886549982
Q ss_pred HHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHH
Q ss_conf 057752283026888621427802999834553033775560246775101264167615223023330230368999
Q gi|254780846|r 96 TLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTA 173 (324)
Q Consensus 96 ~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~ 173 (324)
+.- .- ..+ ..-....|||...-.=| +--++.++.--..--.++++|+.+....|.+||||+||.-
T Consensus 81 ~Dp------~G--~t~--~~~~~e~iVVS~ET~~~---Al~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrg 145 (158)
T COG1019 81 DDP------YG--PTV--EDPDFEAIVVSPETYPG---ALKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRG 145 (158)
T ss_pred CCC------CC--CCC--CCCCEEEEEECCCCCHH---HHHHHHHHHHCCCCCEEEEEEEHHHHHCCCCCCHHHHECC
T ss_conf 589------99--988--76755689976332156---8898899997799971899965212411995414431000
No 31
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.38 E-value=4e-06 Score=60.64 Aligned_cols=132 Identities=12% Similarity=0.207 Sum_probs=72.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHH----HCCCC--CCCCCC
Q ss_conf 999931565028999999999995027977999837986898478886620000789999885----11310--002256
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILE----KMGFS--ALIRYK 94 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~----~~Gid--~vi~~~ 94 (324)
++-+|.||-+|.||..+++.+.+.+...-.+ +.-...+. +.+ ...+.+||.++++ +.|++ .+.+++
T Consensus 3 ~~~~GrFqP~H~GHl~~i~~al~~~d~vii~-Igsa~~~~----~~~---NPft~~ER~~Mi~~~L~~~~i~~~~~~iv~ 74 (170)
T PRK01153 3 ALFIGRFQPFHKGHLEVIKWILEEVDELIIG-IGSAQESH----TLK---NPFTAGERIMMIRKALEEAGIDLSRYYIIP 74 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEE-ECCCCCCC----CCC---CCCCHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 7997165998678999999999738925999-55665577----789---998899999999999997598755089996
Q ss_pred CHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHH
Q ss_conf 40577522830268886214278029998345530337755602467751012641676152230233302303689998
Q gi|254780846|r 95 FTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTAL 174 (324)
Q Consensus 95 F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l 174 (324)
+. ++.. +...+.. +.. +.+..-++ + ++| .....+.++-|++|...|.. + ...+|||.||+++
T Consensus 75 i~-di~~--~~~wv~~-v~~-~~~~f~~~-----~----s~n-~~~~~lf~~~g~~v~~~p~~--~-r~~~Sst~IR~~~ 136 (170)
T PRK01153 75 IP-DIEF--NAVWVSH-VES-LTPPFDVV-----Y----TGN-PLVAQLFREAGYEVRQPPMF--N-RDEYSGTEIRRRM 136 (170)
T ss_pred CC-CCCC--HHHHHHH-HHH-HCCCEEEE-----E----ECC-HHHHHHHHHCCCEEEECCCC--C-CCCEEHHHHHHHH
T ss_conf 36-5440--7789999-998-58983699-----8----487-89999866449769826864--5-6730379999999
Q ss_pred HHHH
Q ss_conf 7258
Q gi|254780846|r 175 TKGH 178 (324)
Q Consensus 175 ~~Gd 178 (324)
..|+
T Consensus 137 ~~g~ 140 (170)
T PRK01153 137 IEGD 140 (170)
T ss_pred HCCC
T ss_conf 8699
No 32
>cd02166 NMNAT_Archaea This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=98.37 E-value=4.5e-06 Score=60.33 Aligned_cols=132 Identities=12% Similarity=0.196 Sum_probs=73.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHH----HHCCCCC--CCCCC
Q ss_conf 99993156502899999999999502797799983798689847888662000078999988----5113100--02256
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKIL----EKMGFSA--LIRYK 94 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l----~~~Gid~--vi~~~ 94 (324)
++-+|.||-+|+||..+++++.+.+...-. +++-...+. ..+ .-.+..||.+++ ++.|++. +..++
T Consensus 2 ~~~~GrFqP~h~GHl~~i~~a~~~~d~~ii-~igs~~~~~----~~~---NPft~~ER~~Mi~~al~~~~~~~~~~~ivp 73 (163)
T cd02166 2 ALFIGRFQPFHLGHLQVIKWILEEVDELII-GIGSAQESH----TLR---NPFTAGERVLMIRKALEEAGIDLSRYYIIP 73 (163)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCEEEE-EECCCCCCC----CCC---CCCCHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 458704599867899999999974892799-977786677----788---998899999999999996698765189985
Q ss_pred CHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHH
Q ss_conf 40577522830268886214278029998345530337755602467751012641676152230233302303689998
Q gi|254780846|r 95 FTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTAL 174 (324)
Q Consensus 95 F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l 174 (324)
+. ++. .+...+.. + +.+.++.-++ | ++| .....+-++.|++|...+.. +...+|||.||+++
T Consensus 74 i~-Di~--~~~~wv~~-v-~~~~p~~~~~-----~----s~~-~~v~~lf~~~g~~V~~~p~~---~r~~~SsT~IR~~~ 135 (163)
T cd02166 74 VP-DIE--TNALWVGY-V-KSLTPPFDVV-----Y----SGN-PLVARLFKEAGYEVRRPPMF---NRDEYSGTEIRRLM 135 (163)
T ss_pred CC-CCC--CHHHHHHH-H-HHHCCCEEEE-----E----ECC-HHHHHHHHHCCCEEECCCCC---CCCCCCHHHHHHHH
T ss_conf 66-544--07789999-9-9738972799-----8----187-89999888819928646752---46755389999999
Q ss_pred HHHH
Q ss_conf 7258
Q gi|254780846|r 175 TKGH 178 (324)
Q Consensus 175 ~~Gd 178 (324)
..|+
T Consensus 136 ~~g~ 139 (163)
T cd02166 136 LGDE 139 (163)
T ss_pred HCCC
T ss_conf 8699
No 33
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=98.37 E-value=2.8e-06 Score=61.70 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=86.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCHHH
Q ss_conf 4999931565028999999999995027977999837986898478886620000789999885113-100022564057
Q gi|254780846|r 20 GVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMG-FSALIRYKFTLE 98 (324)
Q Consensus 20 ~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~G-id~vi~~~F~~~ 98 (324)
-+.|=|-||=+|.||-.+++++++....+- +.+.-|-.=+.. +.+...+.+.++|.++|+.+. +|+++ .|+
T Consensus 342 ivfTng~fd~lh~gh~~~l~~a~~~~d~li-v~~n~d~sv~rl---kg~~rp~~~~~~r~~~l~~l~~vd~v~--~f~-- 413 (473)
T PRK11316 342 IVMTNGCFDILHAGHVSYLANARKLGDRLI-VAVNSDASVKRL---KGEGRPVNPLERRMAVLAALEAVDWVV--PFE-- 413 (473)
T ss_pred EEEECCCHHHCCHHHHHHHHHHHHCCCEEE-EEECCHHHHHHC---CCCCCCCCCHHHHHHHHHCCCCCCEEE--ECC--
T ss_conf 999777001046789999999997199799-995236668761---699999889999999996656356899--779--
Q ss_pred HHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHH--HHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 7522830268886214278029998345530337755602467--75101264167615223023330230368999872
Q gi|254780846|r 99 TANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQ--KRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTK 176 (324)
Q Consensus 99 ~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~--~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~ 176 (324)
.-+|.+-| +.+++..+|-|.||+ .+.+. ++-+.+|-+|..++-+ ++ .|||.|-+-|++
T Consensus 414 --~~tp~~li-----~~~~pd~~~kg~dy~--------~~~~~~~~~v~~~gg~v~~~~~~---~~--~stt~ii~ki~~ 473 (473)
T PRK11316 414 --EDTPQRLI-----AEILPDLLVKGGDYK--------PEEIAGSKEVWANGGEVKVLNFE---DG--CSTTNIIEKIRQ 473 (473)
T ss_pred --CCCHHHHH-----HHHCCCEEEECCCCC--------CCEECCHHHHHHCCCEEEEECCC---CC--CCHHHHHHHHHC
T ss_conf --99989999-----875998999888888--------78337748998659989996588---99--477999999749
No 34
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.35 E-value=2.8e-06 Score=61.65 Aligned_cols=134 Identities=18% Similarity=0.225 Sum_probs=71.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEE-CCCHHHHHCCCCCCCCCCHHHHHHHHHH----HCCCCCCCCCCCH
Q ss_conf 9993156502899999999999502797799983-7986898478886620000789999885----1131000225640
Q gi|254780846|r 22 VAIGNFDGIHLGHHLILEQAIKIANNSPITVLSF-NPHPRTIIQSSSPIFTLSPPSIQEKILE----KMGFSALIRYKFT 96 (324)
Q Consensus 22 vtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF-~p~P~~~~~~~~~~~~l~~~~~k~~~l~----~~Gid~vi~~~F~ 96 (324)
+==|+||-+|.||..+++.+. ...-+.+.= .+||. ++ .+.+.+.|.++++ +++...+-+-++.
T Consensus 6 ifGGSFDP~H~GHl~i~~~l~----~lD~v~~iP~~~~~~------~k--~~~~~~~R~~M~~~ai~~~~~~~~~~~~iE 73 (173)
T PRK08887 6 VFGSAFNPPSLGHKSVIESLS----HFDLVLLVPSIAHAW------GK--EMLDYDTRCELVDAFIKDLGLSNVQRSDLE 73 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH----CCCEEEEEECCCCCC------CC--CCCCHHHHHHHHHHHHHHCCCCCEEEEHHH
T ss_conf 974288986698999999987----589899997898854------56--789999999999999975588871775677
Q ss_pred HHHHH--CCC--HHHHHHHHCCCCC--EEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHH
Q ss_conf 57752--283--0268886214278--02999834553033775560246775101264167615223023330230368
Q gi|254780846|r 97 LETAN--YSA--EQFIQKVLVEWLE--VKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNI 170 (324)
Q Consensus 97 ~~~a~--ls~--e~Fi~~iL~~~l~--~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~I 170 (324)
.++.. .|. .+-++. |.+... -=++++|.|--.....=-+.+.|-+. +.+.+++. .-.||||.|
T Consensus 74 ~~~~~p~~s~~T~~tl~~-l~~~yp~~~~~~IiG~D~~~~~~~W~~~eeIl~~-----~~il~~p~-----~~~ISST~I 142 (173)
T PRK08887 74 QELYQPGESVTTYALLTR-LQEIYPEADITFVIGPDNFLKFAKFYKADEITQR-----WSVMACPE-----TVPIRSTDI 142 (173)
T ss_pred HHCCCCCCCEEHHHHHHH-HHHHCCCCCEEEEEEHHHHHHHHHHCCHHHHHHH-----CEEEECCC-----CCCCCHHHH
T ss_conf 543489974778999999-9997899808999867877656775698999873-----81986888-----887588999
Q ss_pred HHHHHHHH
Q ss_conf 99987258
Q gi|254780846|r 171 RTALTKGH 178 (324)
Q Consensus 171 R~~l~~Gd 178 (324)
|+.+++|.
T Consensus 143 R~~i~~g~ 150 (173)
T PRK08887 143 RNAIVNGS 150 (173)
T ss_pred HHHHHCCC
T ss_conf 99998599
No 35
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP#ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECT's, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=98.32 E-value=9.4e-06 Score=58.25 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=83.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC-CCCCCCC-CCCHH
Q ss_conf 499993156502899999999999502797799983798689847888662000078999988511-3100022-56405
Q gi|254780846|r 20 GVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM-GFSALIR-YKFTL 97 (324)
Q Consensus 20 ~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~-Gid~vi~-~~F~~ 97 (324)
.|.|=|.||=+|.||..+|++|.+.+..+- |.+.-|.. +-..+.+...+.+.++|...++++ -+|.++. -|++
T Consensus 4 iV~~~G~FDl~H~GHi~~L~~Ak~~gd~Li-Vgv~sD~~---v~~~Kg~~rPi~~~~eR~~~l~a~~~VD~Vi~~~p~~- 78 (152)
T cd02173 4 VVYVDGAFDLFHIGHIEFLEKARELGDYLI-VGVHDDQT---VNKYKGKNYPIMNLHERVLSVLACRYVDEVVIGAPYV- 78 (152)
T ss_pred EEEECCEECCCCHHHHHHHHHHHHCCCEEE-EEEECCHH---HHHHCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCC-
T ss_conf 999833778699889999999998699799-99847477---8975589998878999999997498745899499975-
Q ss_pred HHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 77522830268886214278029998345530337755602467751012641676152230233302303689998725
Q gi|254780846|r 98 ETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177 (324)
Q Consensus 98 ~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~G 177 (324)
..++|++ ++++..+|.|.|+.-.....+ ....+..+..|. +..++- . . -+|+|.|-+-|...
T Consensus 79 -----~~~~~i~-----~~~pd~~v~G~d~~~~~~~~~--~~~y~~~k~~G~-~~~~~~--~-~--giSTt~II~RIl~~ 140 (152)
T cd02173 79 -----ITKELIE-----KFKIDVVVHGKTEETPDSLDG--EDPYAVPKEMGI-FKEIDS--G-S--DLTTRDIVQRIIKN 140 (152)
T ss_pred -----CCHHHHH-----HHCCCEEEECCCCCCCCCCCC--HHHHHHHHHCCE-EEEECC--C-C--CCCHHHHHHHHHHH
T ss_conf -----7099999-----849999998798876545670--678999983988-999589--9-9--96799999999982
Q ss_pred HHHH
Q ss_conf 8999
Q gi|254780846|r 178 HVLN 181 (324)
Q Consensus 178 di~~ 181 (324)
.-..
T Consensus 141 r~~y 144 (152)
T cd02173 141 RLAY 144 (152)
T ss_pred HHHH
T ss_conf 9999
No 36
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.27 E-value=1.3e-06 Score=63.76 Aligned_cols=156 Identities=15% Similarity=0.214 Sum_probs=96.3
Q ss_pred CEEECCCCCCCCCCCCCCC-E---EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHH
Q ss_conf 9422488521127610188-4---99993156502899999999999502797799983798689847888662000078
Q gi|254780846|r 1 MHVFHNIEINQSLPNHLKG-G---VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPS 76 (324)
Q Consensus 1 Mki~~~~~~~~~~p~~~~~-~---vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~ 76 (324)
|+||++.+.....-...++ + |-|+| ++|-||..|++++.+. ...+|+|.--+|..|-.++....+-.+.+
T Consensus 1 M~i~~t~~el~~~~~~~~~~~ig~VPTMG---~LH~GHlsLi~~A~~~---~d~vvvSIFVNP~QF~~~eD~~~YPr~~~ 74 (512)
T PRK13477 1 MRILRTVAGLRTWLRNQRSETIGFVPTMG---ALHQGHLSLIRRARQE---NDVVLVSIFVNPLQFGPNEDLERYPRTLE 74 (512)
T ss_pred CEEECCHHHHHHHHHHHCCCEEEEECCCC---HHHHHHHHHHHHHHHH---CCEEEEEEEECCCCCCCCHHHHHCCCCHH
T ss_conf 94766599999999983799489988972---3758999999999986---99699997278777898645776799989
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHH--------HCCC-HH-------------H------HHHHHCCCCCEEEEEECCCCC
Q ss_conf 999988511310002256405775--------2283-02-------------6------888621427802999834553
Q gi|254780846|r 77 IQEKILEKMGFSALIRYKFTLETA--------NYSA-EQ-------------F------IQKVLVEWLEVKTVITGTKFR 128 (324)
Q Consensus 77 ~k~~~l~~~Gid~vi~~~F~~~~a--------~ls~-e~-------------F------i~~iL~~~l~~k~ivVG~Df~ 128 (324)
.-++++++.|+|.++...-. ++. ...+ .. | +.+ |.+..++...+
T Consensus 75 ~D~~ll~~~gvd~vf~P~~~-emYp~~~~~~~~~~~~~~l~~~l~G~~RpghF~GV~Tvv~k-Lf~iv~P~~a~------ 146 (512)
T PRK13477 75 ADRELCESAGVDAIFAPSPE-ELYPGGAKSITQVQPPAELTSHLCGASRPGHFDGVATVVTR-LLNLVQPKRAY------ 146 (512)
T ss_pred HHHHHHHHCCCCEEECCCHH-HCCCCCCCCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHH-HHHHCCCCEEE------
T ss_conf 99999996899999889889-80899998717981663112344177685067789999999-99636999899------
Q ss_pred CCCCCCCCHHHHHHHHHCCC--CEEEECCHHHCCCCCCCCHHHH
Q ss_conf 03377556024677510126--4167615223023330230368
Q gi|254780846|r 129 FGKDRAGDRGILQKRGEKYG--FHTVFIDELRNNKSQIVSSSNI 170 (324)
Q Consensus 129 FG~~r~Gd~~~L~~~~~~~g--~~v~~i~~~~~~~~~~ISSt~I 170 (324)
||.+----...++++.+..+ ++++.+|.++..+|-..||.+.
T Consensus 147 fGeKD~QQl~vIk~mv~dl~~~v~i~~~ptvRe~dGLA~SSRN~ 190 (512)
T PRK13477 147 FGEKDWQQLAIIRRLVADLNLPVTIVGCPTVREADGLALSSRNQ 190 (512)
T ss_pred EECCHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCH
T ss_conf 82322879999999999719993899708637899964313440
No 37
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=98.26 E-value=4e-06 Score=60.63 Aligned_cols=129 Identities=20% Similarity=0.279 Sum_probs=75.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCCCCHHH
Q ss_conf 99993156502899999999999502797799983798689847888662000078999988511--3100022564057
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM--GFSALIRYKFTLE 98 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~--Gid~vi~~~F~~~ 98 (324)
++--|.||-+|.||..+++++.+.-...- +++.-+ +.+. .+.+.++|.+++++. +.+.+-+..|+
T Consensus 4 ai~pGSFDPit~GHldii~ra~~lfD~vi-v~v~~N--------p~K~--~~f~~eeR~~mi~~~~~~~~nv~V~~~~-- 70 (159)
T PRK00168 4 AIYPGSFDPITNGHLDIIERASKLFDEVI-VAVAIN--------PSKK--PLFSLEERVELIREVTAHLPNVEVVGFD-- 70 (159)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCEEE-EECCCC--------CCCC--CCCCHHHHHHHHHHHHCCCCCEEEEECC--
T ss_conf 99472679884479999999998679999-940569--------8877--7789999999999985158997999436--
Q ss_pred HHHCCCHHHHHHHHCCCCCEEEEEEC----CCCCCCCCCCCCHHHHH-HHHHCCCCEEEECCHHHCCCCCCCCHHHHHHH
Q ss_conf 75228302688862142780299983----45530337755602467-75101264167615223023330230368999
Q gi|254780846|r 99 TANYSAEQFIQKVLVEWLEVKTVITG----TKFRFGKDRAGDRGILQ-KRGEKYGFHTVFIDELRNNKSQIVSSSNIRTA 173 (324)
Q Consensus 99 ~a~ls~e~Fi~~iL~~~l~~k~ivVG----~Df~FG~~r~Gd~~~L~-~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~ 173 (324)
.+. -+|. ++.++..|+-| .||-+=.. .+... .++ -+++++.+.+- .+-.-||||.||+.
T Consensus 71 --gL~-vd~a-----k~~~a~~iiRGlR~~~DfeyE~~----~a~~N~~l~--~~ieTvfl~~~--~~~~~ISSs~VRei 134 (159)
T PRK00168 71 --GLL-VDFA-----REVGATVIVRGLRAVSDFEYEFQ----MAGMNRKLA--PEIETVFLMPS--EEYSFISSSLVREV 134 (159)
T ss_pred --CHH-HHHH-----HHCCCEEEEEECCCCHHHHHHHH----HHHHHHHCC--CCCCEEEECCC--CCCCEECHHHHHHH
T ss_conf --503-2357-----76698499960564047599988----999997438--99888996389--76774538999999
Q ss_pred HHHHH
Q ss_conf 87258
Q gi|254780846|r 174 LTKGH 178 (324)
Q Consensus 174 l~~Gd 178 (324)
+..|.
T Consensus 135 ~~~gg 139 (159)
T PRK00168 135 ARLGG 139 (159)
T ss_pred HHCCC
T ss_conf 98499
No 38
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=98.21 E-value=6.5e-06 Score=59.31 Aligned_cols=146 Identities=17% Similarity=0.185 Sum_probs=97.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCCC---------
Q ss_conf 156502899999999999502797799983798689847888662000078999988511--310002256---------
Q gi|254780846|r 26 NFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM--GFSALIRYK--------- 94 (324)
Q Consensus 26 ~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~--Gid~vi~~~--------- 94 (324)
|=.-+.+|||.|+++|-+.... +..|. ...+. .+.+.++|.++.++- .++++.+++
T Consensus 7 NaNPFT~GH~yLie~Aa~~~D~----l~vFv------v~ed~---S~F~~~~R~~LV~~g~~~l~Nv~v~~g~~YiIS~a 73 (182)
T smart00764 7 NANPFTLGHRYLVEQAAAECDW----VHLFV------VSEDA---SLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRA 73 (182)
T ss_pred CCCCCCCHHHHHHHHHHHHCCE----EEEEE------ECCCC---CCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEECC
T ss_conf 1898753489999999964998----99999------73666---73889999999999757799879977999898636
Q ss_pred -C-----------HHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCC
Q ss_conf -4-----------0577522830268886214278029998345530337755602467751012641676152230233
Q gi|254780846|r 95 -F-----------TLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKS 162 (324)
Q Consensus 95 -F-----------~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~ 162 (324)
| .+.-+.+++.-|-+ .+...|+...-.||+.=.----+.=|- .|++.-...|+++++|+-.. .++
T Consensus 74 TFP~YFlK~~~~v~~~~~~lD~~iF~~-~IApaL~It~RfVG~EP~~~vT~~YN~-~M~~~l~~~~Iev~~i~R~~-~~g 150 (182)
T smart00764 74 TFPSYFLKEQDVVIKSQTTLDLRIFRK-YIAPALGITHRYVGEEPFSPVTAIYNQ-TMKQTLLSPAIEVVEIERKK-ANG 150 (182)
T ss_pred CCCHHHCCCHHHHHHHHHHHHHHHHHH-HCHHHHCCCCCEECCCCCCHHHHHHHH-HHHHHCCCCCCEEEEEECCC-CCC
T ss_conf 671333167326989998987999998-543551876324178989876999999-99974678997899961422-599
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3023036899987258999998500
Q gi|254780846|r 163 QIVSSSNIRTALTKGHVLNAAHLLG 187 (324)
Q Consensus 163 ~~ISSt~IR~~l~~Gdi~~an~lLG 187 (324)
++||.|++|++|++||++...+|+-
T Consensus 151 ~~ISAS~VR~~l~~~~~~~i~~lVP 175 (182)
T smart00764 151 QPISASTVRKLLKEGNLEELAKLVP 175 (182)
T ss_pred CEEEHHHHHHHHHCCCHHHHHHHCC
T ss_conf 4870999999998599999987388
No 39
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.19 E-value=1.4e-05 Score=57.13 Aligned_cols=169 Identities=16% Similarity=0.194 Sum_probs=99.8
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCC
Q ss_conf 7610188499993156502899999999999502797799983798689847888662000078999988511--31000
Q gi|254780846|r 13 LPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM--GFSAL 90 (324)
Q Consensus 13 ~p~~~~~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~--Gid~v 90 (324)
+|...+..=|.+|.|--+|.||..+|.+|....+++- +|++.++.+..-+.-++.....-++..|++++++. -.+++
T Consensus 59 ~~~~~k~iGvifGkF~PlH~GHi~~I~~A~~~~D~L~-Vvv~~d~~rd~~l~~~s~m~~~~t~~dR~Rwl~q~f~d~~~I 137 (411)
T PRK08099 59 FPRRMKKIGVVFGKFYPLHTGHIYLIQRACSQVDELH-IIMGYDDTRDRKLFEDSAMSQQPTVQDRLRWLLQTFKYQKNI 137 (411)
T ss_pred CHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEE-EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 4022202337987640542428999999973178589-999407985400033446544567899999999995447670
Q ss_pred CCCCCHHHHHHCCCHH-----H---HHHHHC-CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCC
Q ss_conf 2256405775228302-----6---888621-427802999834553033775560246775101264167615223023
Q gi|254780846|r 91 IRYKFTLETANYSAEQ-----F---IQKVLV-EWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNK 161 (324)
Q Consensus 91 i~~~F~~~~a~ls~e~-----F---i~~iL~-~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~ 161 (324)
.+..++++ ++++-. . +.+++. +.+++..|.+|+ ..+...++++ ++.++..|++-+ .
T Consensus 138 ~v~~l~E~--~ip~yp~gW~~W~~~lk~l~~~~~~~~d~vf~~E--------~~~~~~~~~~---~~~e~~lVD~~R--~ 202 (411)
T PRK08099 138 RIHAFNEE--GMEPYPHGWDVWSNGIKAFMAEKGIQPDLIYTSE--------EADAPQYEEH---LGIETVLVDPKR--T 202 (411)
T ss_pred EEEEECCC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECC--------CCCHHHHHHC---CCCCEEEECCCC--C
T ss_conf 89983567--9988998668999999999973378988599578--------5416789860---586138866765--4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
Q ss_conf 33023036899987258999998500000000012210
Q gi|254780846|r 162 SQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIHG 199 (324)
Q Consensus 162 ~~~ISSt~IR~~l~~Gdi~~an~lLGr~y~i~G~Vv~G 199 (324)
.-+||+|.||+--. +.-+-..+. =|+|++.-.|+-|
T Consensus 203 ~~pISaT~IR~nP~-~~W~~Ip~~-vR~~FvKkVvIlG 238 (411)
T PRK08099 203 FMNISGTQIRENPF-RYWEYIPTE-VKPFFVRTVAILG 238 (411)
T ss_pred CCCCCHHHHHHCHH-HHHHHCCHH-HHHHHCEEEEEEC
T ss_conf 16754878863878-888861377-7775436899989
No 40
>TIGR00018 panC pantoate--beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis . Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway .; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process.
Probab=98.18 E-value=1.6e-06 Score=63.29 Aligned_cols=176 Identities=19% Similarity=0.199 Sum_probs=120.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCH----
Q ss_conf 9999315650289999999999950279779998379868984788866200007899998851131000225640----
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFT---- 96 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~---- 96 (324)
|=|+|+ +|.||+.|++++++.+ ..+|++.--+|..|=.++.-..+--++++-.++++++|+|.++...-.
T Consensus 30 VPTMG~---LH~GH~sL~~~a~~En---d~vvvSIFVNP~QFgp~EDl~~YPR~l~~D~~l~E~lgVd~~FaP~~~~mYP 103 (310)
T TIGR00018 30 VPTMGA---LHEGHLSLIDRAVKEN---DLVVVSIFVNPLQFGPNEDLEAYPRDLEEDLALLEKLGVDVVFAPKVHEMYP 103 (310)
T ss_pred CCCCCC---HHHHHHHHHHHHHHHC---CEEEEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCEEECCCCEEECC
T ss_conf 267310---1567899999998668---8589999757878888754544579858999999838965885572144078
Q ss_pred --------HHHHHCCCHHHHHHHHCCCC-------------CEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEE--EE
Q ss_conf --------57752283026888621427-------------80299983455303377556024677510126416--76
Q gi|254780846|r 97 --------LETANYSAEQFIQKVLVEWL-------------EVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHT--VF 153 (324)
Q Consensus 97 --------~~~a~ls~e~Fi~~iL~~~l-------------~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v--~~ 153 (324)
++=-.+.+..|+.+.|...- ++=+||.-.=..||.+-.=-...++++-+.+++.+ ..
T Consensus 104 ~~~PldieE~~~~~~~p~~ls~~LeGa~RpGHF~GVa~iVtKLFnlV~Pd~AYFG~KD~QQla~i~~lV~Dl~~di~i~~ 183 (310)
T TIGR00018 104 DGAPLDIEEQKTTVLVPKALSEVLEGASRPGHFRGVATIVTKLFNLVKPDVAYFGKKDAQQLAVIRKLVKDLFLDIEIVP 183 (310)
T ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 86232113754478617654100167898682342025454100316745100477438899999999987346308763
Q ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH---HCCCCCC
Q ss_conf 15223023330230368999872589999985000000000122---1002011
Q gi|254780846|r 154 IDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVI---HGEKIGR 204 (324)
Q Consensus 154 i~~~~~~~~~~ISSt~IR~~l~~Gdi~~an~lLGr~y~i~G~Vv---~G~~~Gr 204 (324)
++.++.++|-..||-+ .+|..-.-+.|..|==-=-++.-.+- .|.+..|
T Consensus 184 ~~iVR~~dGLAlSSRN--~YL~a~~rK~A~~LYr~L~~~~~~~~rla~GeR~sr 235 (310)
T TIGR00018 184 VPIVREEDGLALSSRN--VYLTAEERKQAPKLYRALQAAAQAIRRLAAGERDSR 235 (310)
T ss_pred EEEEECCCCCEECCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 3056348884120147--667866787641023799999999998537773114
No 41
>pfam01467 CTP_transf_2 Cytidylyltransferase. This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase.
Probab=98.14 E-value=2.1e-05 Score=55.94 Aligned_cols=131 Identities=25% Similarity=0.265 Sum_probs=65.1
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEE-EEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCC----------
Q ss_conf 9315650289999999999950279779-9983798689847888662000078999988511--31000----------
Q gi|254780846|r 24 IGNFDGIHLGHHLILEQAIKIANNSPIT-VLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM--GFSAL---------- 90 (324)
Q Consensus 24 iG~FDGvH~GHq~Li~~~~~~a~~~~~~-viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~--Gid~v---------- 90 (324)
-|.||-+|.||..+++.+.+..+..... +.+..| +.+....+.+.++|.++++.. +.+.+
T Consensus 3 gGsFdP~H~GHl~i~~~a~~~~~~d~v~~ip~~~~-------p~k~~~~~~~~~~R~~ml~~a~~~~~~~~v~~~e~~~~ 75 (148)
T pfam01467 3 GGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDES-------PHKDTKNLFSAEERLEMLELALEVDPNLEVDDFEDLDV 75 (148)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC-------CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHH
T ss_conf 72579887999999999999769987999976765-------66678888999999999999982399769973302678
Q ss_pred -CCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHH
Q ss_conf -2256405775228302688862142780299983455303377556024677510126416761522302333023036
Q gi|254780846|r 91 -IRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSN 169 (324)
Q Consensus 91 -i~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~ 169 (324)
+++.-| .+..+....-.++++.. +.-+|+.-.- .... ........-..+......+...... .||||.
T Consensus 76 ~~i~G~D-~~~~~~~W~~~~~i~~~---~~~~v~~R~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~ISST~ 144 (148)
T pfam01467 76 YFIIGAD-ALVNLRGWRGVTELLPE---FQIVVVNRPL---DYGL-ETVFLREELDKYPLGKIVIPDLPYN---DISSTE 144 (148)
T ss_pred HHHHCCC-HHHHCCCCCCHHHHHHH---CCEEEEECCC---CCCC-CHHHHHHHHHHCCCCCEEECCCCCC---CCCCHH
T ss_conf 9998499-05544887879999950---7789982899---9750-1234133443235773797878757---648288
Q ss_pred HHH
Q ss_conf 899
Q gi|254780846|r 170 IRT 172 (324)
Q Consensus 170 IR~ 172 (324)
||+
T Consensus 145 IR~ 147 (148)
T pfam01467 145 IRE 147 (148)
T ss_pred HCC
T ss_conf 629
No 42
>cd02169 Citrate_lyase_ligase Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.06 E-value=2e-05 Score=56.05 Aligned_cols=148 Identities=20% Similarity=0.227 Sum_probs=99.3
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCCC-------
Q ss_conf 93156502899999999999502797799983798689847888662000078999988511--310002256-------
Q gi|254780846|r 24 IGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM--GFSALIRYK------- 94 (324)
Q Consensus 24 iG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~--Gid~vi~~~------- 94 (324)
+=|=.-+-+|||.|+++|-+... . |..|. ...+. .+.+.++|.++.++- .+++|.+++
T Consensus 119 VMNaNPFTlGHrYLvE~Aa~~~D---~-l~vFV------V~ED~---S~F~f~~R~~LVk~G~~~L~NV~v~~g~~YiIS 185 (296)
T cd02169 119 VMNANPFTLGHRYLVEKAASEND---W-VYVFV------VSEDS---SLFPFEDRLKLVKKGTAHLKNVTVHPGGDYIIS 185 (296)
T ss_pred EEECCCCCCHHHHHHHHHHHHCC---E-EEEEE------EECCC---CCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEE
T ss_conf 99379875147999999996499---8-99999------94545---648789999999997475888699779997986
Q ss_pred ---C-----------HHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCC
Q ss_conf ---4-----------05775228302688862142780299983455303377556024677510126416761522302
Q gi|254780846|r 95 ---F-----------TLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNN 160 (324)
Q Consensus 95 ---F-----------~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~ 160 (324)
| .+.-+.+++.-|-+ .+...|+...=.||+.=.----+.=| +.|+++-...|+++++||-...
T Consensus 186 ~aTFPsYFlK~~~~v~~~qa~lD~~iF~~-~IApaL~It~RfVG~EP~~~vT~~YN-~~M~~~Lp~~~Iev~~i~R~~~- 262 (296)
T cd02169 186 SATFPSYFLKEDDVVIKSQAALDARIFRK-YIAPALGITRRYVGEEPFSPVTAIYN-QAMKSELPPPGIEVIEIERKTT- 262 (296)
T ss_pred CCCCCHHHCCCHHHHHHHHHHHHHHHHHH-HCHHHHCCCCCEECCCCCCHHHHHHH-HHHHHHCCCCCCEEEEECCCCC-
T ss_conf 46671444077437889998886999998-44365087521517898987699999-9999855769967999604115-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 333023036899987258999998500
Q gi|254780846|r 161 KSQIVSSSNIRTALTKGHVLNAAHLLG 187 (324)
Q Consensus 161 ~~~~ISSt~IR~~l~~Gdi~~an~lLG 187 (324)
++++||.|++|++|++||++...+|+-
T Consensus 263 ~g~~ISAS~VR~~l~~~~~~~i~~lVP 289 (296)
T cd02169 263 DGQPISASTVRQALKNGDLETLAKLVP 289 (296)
T ss_pred CCCEEEHHHHHHHHHCCCHHHHHHHCC
T ss_conf 993870999999998599999976388
No 43
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=98.04 E-value=2.5e-06 Score=62.02 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=98.4
Q ss_pred CEEECCCCCCCCCCCC---CC---CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCH
Q ss_conf 9422488521127610---18---84999931565028999999999995027977999837986898478886620000
Q gi|254780846|r 1 MHVFHNIEINQSLPNH---LK---GGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSP 74 (324)
Q Consensus 1 Mki~~~~~~~~~~p~~---~~---~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~ 74 (324)
|+||+++..-...-.. .. +.|-|+|+ +|-||..|++++++.+ ..+|++.--+|..|=.++.-..+-.+
T Consensus 1 m~vi~ti~~lr~~~~~~r~~gk~Vg~VPTMG~---LH~GHlsLVr~A~~~~---d~VVVSIFVNP~QFg~~EDl~~YPR~ 74 (285)
T COG0414 1 MRVITTIAELRQAIKALRKEGKRVGLVPTMGN---LHEGHLSLVRRAKKEN---DVVVVSIFVNPLQFGPNEDLDRYPRT 74 (285)
T ss_pred CEEEEHHHHHHHHHHHHHHCCCEEEEECCCCC---CCHHHHHHHHHHHHCC---CEEEEEEEECHHHCCCCHHHHHCCCC
T ss_conf 92030399999999999971987999827742---1167999999986409---93999998671314985245547988
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHH----------HHHHHCCCC-------------CEEEEEECCCCCCCC
Q ss_conf 789999885113100022564057752283026----------888621427-------------802999834553033
Q gi|254780846|r 75 PSIQEKILEKMGFSALIRYKFTLETANYSAEQF----------IQKVLVEWL-------------EVKTVITGTKFRFGK 131 (324)
Q Consensus 75 ~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~F----------i~~iL~~~l-------------~~k~ivVG~Df~FG~ 131 (324)
++.-..++++.|+|.++.. +...|-|..+ +...|.... +.-.||--....||.
T Consensus 75 l~~D~~~l~~~gvd~vF~P----~~~emYP~g~~~~~~~~v~~ls~~LeGa~RPGHF~GV~TVV~KLFniv~Pd~AyFGe 150 (285)
T COG0414 75 LERDLELLEKEGVDIVFAP----TVEEMYPHGIERVTVVPVPGLSDELEGASRPGHFRGVATVVTKLFNIVQPDRAYFGE 150 (285)
T ss_pred HHHHHHHHHHCCCCEEECC----CHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCCEEEECC
T ss_conf 8999999986698689688----766418898862466147775520057988876451656777554624888335553
Q ss_pred CCCCCHHHHHHHHHCCCCEE--EECCHHHCCCCCCCCHHHH
Q ss_conf 77556024677510126416--7615223023330230368
Q gi|254780846|r 132 DRAGDRGILQKRGEKYGFHT--VFIDELRNNKSQIVSSSNI 170 (324)
Q Consensus 132 ~r~Gd~~~L~~~~~~~g~~v--~~i~~~~~~~~~~ISSt~I 170 (324)
+-.--...++++.+.+++.+ +.+|.++..+|-..||.+.
T Consensus 151 KD~QQl~vIr~mV~DL~~~VeIv~vptVRe~DGLA~SSRN~ 191 (285)
T COG0414 151 KDYQQLAVIRRMVADLNLPVEIVGVPTVREEDGLALSSRNV 191 (285)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCHHHCCC
T ss_conf 06999999999999718970797126268687640000455
No 44
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.01 E-value=2.8e-05 Score=55.14 Aligned_cols=145 Identities=20% Similarity=0.146 Sum_probs=74.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCCCCHHH
Q ss_conf 99993156502899999999999502797799983798689847888662000078999988511--3100022564057
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM--GFSALIRYKFTLE 98 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~--Gid~vi~~~F~~~ 98 (324)
++-=|+||-+|.||..+.+.+.+...--. +.|-|.|. .+.++..-+.+.++|.++++.. +.+.+-+-.+ +
T Consensus 6 ~lfGGsFdP~H~GHl~ia~~~~~~l~ld~---vi~~ps~~---~p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~--e 77 (197)
T COG1057 6 ALFGGSFDPPHYGHLLIAEEALDQLGLDK---VIFLPSPV---PPHKKKKELASAEHRLAMLELAIEDNPRFEVSDR--E 77 (197)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCCE---EEEECCCC---CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHH--H
T ss_conf 99613899987899999999998749887---99944898---9777766679999999999999825997613199--9
Q ss_pred HHHCCCH---HHHHHHHCCCCCEE---EEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHH---------------
Q ss_conf 7522830---26888621427802---99983455303377556024677510126416761522---------------
Q gi|254780846|r 99 TANYSAE---QFIQKVLVEWLEVK---TVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDEL--------------- 157 (324)
Q Consensus 99 ~a~ls~e---~Fi~~iL~~~l~~k---~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~--------------- 157 (324)
..+..+- +=++. +.+..++. ..++|.|---.-.+==+.+.|-++++ |-|..-+-.
T Consensus 78 ~~r~g~sYT~dTl~~-~~~~~~p~~~~~fIiGaD~l~~l~~W~~~~ell~~~~---~vv~~Rp~~~~~~~~~~~~~~~~~ 153 (197)
T COG1057 78 IKRGGPSYTIDTLEH-LRQEYGPDVELYFIIGADNLASLPKWYDWDELLKLVT---FVVAPRPGYGELELSLLSSGGAII 153 (197)
T ss_pred HHCCCCCEEHHHHHH-HHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCC---EEEEECCCCHHHHHHHHCCCCEEE
T ss_conf 975799660999999-9998589985899970477504351345999997397---999956774043044433686289
Q ss_pred -HCCCCCCCCHHHHHHHHHHH
Q ss_conf -30233302303689998725
Q gi|254780846|r 158 -RNNKSQIVSSSNIRTALTKG 177 (324)
Q Consensus 158 -~~~~~~~ISSt~IR~~l~~G 177 (324)
....--.||||.||+.+..|
T Consensus 154 ~~~~~~~~ISSt~IR~~~~~~ 174 (197)
T COG1057 154 LLDLPRLDISSTEIRERIRRG 174 (197)
T ss_pred ECCCCCCCCCHHHHHHHHHCC
T ss_conf 725864447469999998579
No 45
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=98.00 E-value=2.8e-05 Score=55.18 Aligned_cols=132 Identities=20% Similarity=0.273 Sum_probs=80.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCCCCHH
Q ss_conf 499993156502899999999999502797799983798689847888662000078999988511--310002256405
Q gi|254780846|r 20 GVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM--GFSALIRYKFTL 97 (324)
Q Consensus 20 ~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~--Gid~vi~~~F~~ 97 (324)
.++.=|+||-++.||..+|+++.++....-. ++..+ |.+. .+.+++||.+++++. .++++-+..|+
T Consensus 4 iavypGSFDPiTnGHlDii~RA~~~Fd~viV-aV~~n--------p~K~--plFsleER~~l~~~~~~~l~nV~V~~f~- 71 (159)
T COG0669 4 IAVYPGSFDPITNGHLDIIKRASALFDEVIV-AVAIN--------PSKK--PLFSLEERVELIREATKHLPNVEVVGFS- 71 (159)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCEEEE-EEEEC--------CCCC--CCCCHHHHHHHHHHHHCCCCCEEEEECC-
T ss_conf 5883898799866519999999974067999-99857--------9867--6858999999999986379964998424-
Q ss_pred HHHHCCCHHHHHHHHCCCCCEEEEEEC----CCCCCCCCCCCCHHHHH-HHHHCCCCEEEECCHHHCCCCCCCCHHHHHH
Q ss_conf 775228302688862142780299983----45530337755602467-7510126416761522302333023036899
Q gi|254780846|r 98 ETANYSAEQFIQKVLVEWLEVKTVITG----TKFRFGKDRAGDRGILQ-KRGEKYGFHTVFIDELRNNKSQIVSSSNIRT 172 (324)
Q Consensus 98 ~~a~ls~e~Fi~~iL~~~l~~k~ivVG----~Df~FG~~r~Gd~~~L~-~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~ 172 (324)
.++-++ .++.+++.||=| .||-+-.+-+ .+. ++.. +++...+++- .+-..||||.+|+
T Consensus 72 --------~Llvd~-ak~~~a~~ivRGLR~~sDfeYE~qma----~~N~~L~~--eveTvFl~~s--~~~~~iSSs~Vre 134 (159)
T COG0669 72 --------GLLVDY-AKKLGATVLVRGLRAVSDFEYELQMA----HMNRKLAP--EVETVFLMPS--PEYSFISSSLVRE 134 (159)
T ss_pred --------CHHHHH-HHHCCCCEEEEECCCCCHHHHHHHHH----HHHHHHCC--CCCEEEECCC--CCEEHHHHHHHHH
T ss_conf --------189999-99859978987234563189999999----99986256--5547994487--5500100799999
Q ss_pred HHHHH-HHH
Q ss_conf 98725-899
Q gi|254780846|r 173 ALTKG-HVL 180 (324)
Q Consensus 173 ~l~~G-di~ 180 (324)
...-| |+.
T Consensus 135 ia~~ggdvs 143 (159)
T COG0669 135 IAAFGGDVS 143 (159)
T ss_pred HHHHCCCCH
T ss_conf 998479801
No 46
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase; InterPro: IPR001980 Temperature-sensitive mutants of Escherichia coli, defective in the transfer of 3-deoxy-D-manno-octulosonic acid (KDO) from CMP-KDO to a tetraacyldisaccharide 1,4'-bisphosphate precursor of lipid A, have been used to map KDO transferase activity on the E. coli chromosome . The KDO transferase gene, designated kdtA, was shown to code for a 43kDa polypeptide. Overexpression of this single gene product greatly stimulates incorporation of two stereochemically distinct KDO residues during lipopolysaccharide biosynthesis in extracts of E. coli . From these experiments this protein was thought to play a role in lipopolysaccharide biosynthesis, however now it is annotated as phosphopantetheine adenylyltransferase (2.7.7.3 from EC), which catalyses the reversible transfer of an adenylyl group from ATP to 4'-phosphopantetheine to give dephospho-CoA (DPCOA) and pyrophosphate in the fourth (and penultimate) step of coenzyme A biosynthesis .; GO: 0004595 pantetheine-phosphate adenylyltransferase activity, 0015937 coenzyme A biosynthetic process.
Probab=97.89 E-value=9.9e-06 Score=58.11 Aligned_cols=128 Identities=21% Similarity=0.244 Sum_probs=79.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC---CC---CCCCCCC
Q ss_conf 99993156502899999999999502797799983798689847888662000078999988511---31---0002256
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM---GF---SALIRYK 94 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~---Gi---d~vi~~~ 94 (324)
+|-=|+||-+|.||.-||+++.++-.+--.+| . .++++. .+.+.++|.+++++. -+ .+|.+..
T Consensus 2 A~YPGSFDP~T~GHLDiikRa~~lFDeV~Vav-~--------~N~~K~--~~f~~eeR~~~~~~~tk~~l~~~~NV~V~~ 70 (163)
T TIGR01510 2 ALYPGSFDPITNGHLDIIKRALKLFDEVIVAV-A--------INPSKK--PLFSLEERVELIEDATKKHLKKIPNVEVDV 70 (163)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCEEEEEE-E--------ECCCCC--CCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 55488899874363889999986221777888-8--------748898--568989999999999999723698148984
Q ss_pred CHHHHHHCCCHHHHHHHHCCCCCEEEEEEC----CCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHH
Q ss_conf 405775228302688862142780299983----4553033775560246775101264167615223023330230368
Q gi|254780846|r 95 FTLETANYSAEQFIQKVLVEWLEVKTVITG----TKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNI 170 (324)
Q Consensus 95 F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG----~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~I 170 (324)
|+. .++-+ ..+.+++..||=| .||-.=.+...--+. + .-+++++-+.+-..+ ..||||.+
T Consensus 71 f~~--------~L~Vd-~Ak~~~a~~ivRGlR~~~DFEYE~~~~~~N~~---L--a~eieTVFL~~~~~~--~~~SSs~V 134 (163)
T TIGR01510 71 FDG--------RLLVD-YAKELGATFIVRGLRAVTDFEYELQMALMNQK---L--APEIETVFLMASPEY--AAVSSSLV 134 (163)
T ss_pred CCC--------CEEEE-EHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH---H--CCCCCEEEECCCCCH--HHHHHHHH
T ss_conf 067--------12121-01366870898601476607899999999997---5--579868972787223--66676788
Q ss_pred HHHHH
Q ss_conf 99987
Q gi|254780846|r 171 RTALT 175 (324)
Q Consensus 171 R~~l~ 175 (324)
|+...
T Consensus 135 ke~~~ 139 (163)
T TIGR01510 135 KEIAS 139 (163)
T ss_pred HHHHC
T ss_conf 87507
No 47
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=97.73 E-value=0.00015 Score=50.39 Aligned_cols=138 Identities=20% Similarity=0.198 Sum_probs=88.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC-CCCC-CC-CCCCHHH
Q ss_conf 9993156502899999999999502797799983798689847888662000078999988511-3100-02-2564057
Q gi|254780846|r 22 VAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM-GFSA-LI-RYKFTLE 98 (324)
Q Consensus 22 vtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~-Gid~-vi-~~~F~~~ 98 (324)
|.+|+|=-+|-||+.||.+|.+.-.++.+ |+.+|.--..-+..++.....-|.++|+++|.++ .-+. +| +..+|++
T Consensus 5 ~~fGkF~P~HtGH~~li~~a~s~vDel~i-vvg~D~~RD~~lf~D~~a~~~~p~~~R~rwl~e~F~~~~N~i~~~~~ne~ 83 (346)
T TIGR01526 5 VVFGKFYPLHTGHIYLIYKAASKVDELHI-VVGSDDVRDLKLFNDSTAAEGPPVEDRLRWLRELFKYQKNVIKIHNLNEN 83 (346)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCEEE-EECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 78455589851459999998542681489-97277233222200022311789889999998616743266886112888
Q ss_pred HHH--------CCCHHHHHHHHCCC----CCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCC
Q ss_conf 752--------28302688862142----780299983455303377556024677510126416761522302333023
Q gi|254780846|r 99 TAN--------YSAEQFIQKVLVEW----LEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVS 166 (324)
Q Consensus 99 ~a~--------ls~e~Fi~~iL~~~----l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~IS 166 (324)
=.. |+. =+.++|..+ ..+..|.+|+.- +.+.+++.-..-|.++..+++-+.. -.||
T Consensus 84 ~~~~~P~GWd~W~~--~l~~l~~~~tle~~~p~~vy~~E~~--------y~A~~~~~L~aDG~~~~~vd~~Rt~--~~vs 151 (346)
T TIGR01526 84 GLPEYPNGWDIWSN--SLKELLAEKTLERIEPDLVYVSEPE--------YAAEYKKVLGADGAEFVLVDPDRTF--VSVS 151 (346)
T ss_pred CCCCCCCHHHHHHH--HHHHHHHHHHHCCCCCCEEEECCCC--------CCCHHHHHCCCCCCEEEEECCCCCE--EECC
T ss_conf 78887776678999--9989986544101467557725600--------1404786278886369998189714--5044
Q ss_pred HHHHHH
Q ss_conf 036899
Q gi|254780846|r 167 SSNIRT 172 (324)
Q Consensus 167 St~IR~ 172 (324)
.|-||+
T Consensus 152 AT~IR~ 157 (346)
T TIGR01526 152 ATQIRE 157 (346)
T ss_pred HHHHHC
T ss_conf 205321
No 48
>PTZ00308 ethanolamine-phosphate cytidylytransferase; Provisional
Probab=97.73 E-value=0.00044 Score=47.41 Aligned_cols=124 Identities=19% Similarity=0.293 Sum_probs=83.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCCCC-CCCHHH
Q ss_conf 999931565028999999999995027977999837986898478886620000789999885113-100022-564057
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMG-FSALIR-YKFTLE 98 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~G-id~vi~-~~F~~~ 98 (324)
+-+=|.||-+|.||...|++|++....+-.+|.+ | .++...+. + .+++.+||.+.++... +|.++. .|+.
T Consensus 14 vy~DG~fDl~H~GH~~~l~QAk~lg~~LiVGV~s-D---e~i~~~Kg-~-pVm~~~ER~~~v~~ckwVDeVi~~aPy~-- 85 (353)
T PTZ00308 14 VWVDGCFDMLHFGHANALRQARALGDELFVGCHS-D---EEIMRNKG-P-PVMHQEERYEALRACKWVDEVVEGYPYT-- 85 (353)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCEEEEEECC-H---HHHHHCCC-C-CCCCHHHHHHHHHCCCCCCCCCCCCCCC--
T ss_conf 9971644210388899999999859989999688-8---99995289-9-8688899999996164767524697985--
Q ss_pred HHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHH
Q ss_conf 7522830268886214278029998345530337755602467751012641676152230233302303689
Q gi|254780846|r 99 TANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIR 171 (324)
Q Consensus 99 ~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR 171 (324)
...+|++ ++++..++=|.|-..+.+..--++.+|+.|+ |.++. +. +-||+|-|=
T Consensus 86 ----~~~~~l~-----~~~id~vvHgdd~~~~~~g~d~Y~~~k~~gr---f~~~k----RT---~giSTtdlv 139 (353)
T PTZ00308 86 ----TRLEDLE-----RLECDFVVHGDDISVDLNGRNSYQEIIDAGK---FKVVK----RT---EGISTTDLV 139 (353)
T ss_pred ----CCHHHHH-----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCC---EEEEE----CC---CCCCHHHHH
T ss_conf ----8999999-----8098789607865228997682198997598---48763----58---996788999
No 49
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=97.73 E-value=0.00068 Score=46.15 Aligned_cols=148 Identities=18% Similarity=0.259 Sum_probs=92.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHH----HHHHCCCCCCCC
Q ss_conf 1884999931565028999999999995027977999837986898478886620000789999----885113100022
Q gi|254780846|r 17 LKGGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK----ILEKMGFSALIR 92 (324)
Q Consensus 17 ~~~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~----~l~~~Gid~vi~ 92 (324)
--.++|+.-+++-+|+||..|.+.|.+.+.+.- + ||. ....++.. .+.+-|++ +++.+-+...++
T Consensus 182 gwk~vvafQTRNp~HraHEyl~K~Al~~vdgll---v----~pl--VG~tk~gD--~~~e~rm~~ye~l~~~Yyp~dr~~ 250 (397)
T COG2046 182 GWKTVVAFQTRNPPHRAHEYLQKRALEKVDGLL---V----HPL--VGATKPGD--IPDEVRMEYYEALLKHYYPPDRVF 250 (397)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEE---E----EEE--ECCCCCCC--CHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 770899996289831889999999998658179---9----752--22666898--508999999999997379987489
Q ss_pred CCCHHHHHHCC-C-HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCH-------HHHHHHHHCCCCEEEECCHHH-C---
Q ss_conf 56405775228-3-026888621427802999834553033775560-------246775101264167615223-0---
Q gi|254780846|r 93 YKFTLETANYS-A-EQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDR-------GILQKRGEKYGFHTVFIDELR-N--- 159 (324)
Q Consensus 93 ~~F~~~~a~ls-~-e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~-------~~L~~~~~~~g~~v~~i~~~~-~--- 159 (324)
+.|.+.-+.+. | |.-...|+-+.+++.+.+||-|+. +-||+ ..+.++.+++|++....++.. |
T Consensus 251 Ls~~~~aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHA----GvG~yYg~Y~aq~if~~f~~eLgI~p~~f~e~~YC~~c 326 (397)
T COG2046 251 LSVLPAAMRYAGPREALLHAIIRKNYGCTHFIVGRDHA----GVGDYYGPYDAQEIFDEFSPELGITPVFFEEFFYCPKC 326 (397)
T ss_pred EEECHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCC----CCCCCCCCCCHHHHHHHCCCCCCCEEEECCCEEECCCC
T ss_conf 98437886404837888999998505970266567778----76566786207999983660358378860231641320
Q ss_pred ---------C----CCCCCCHHHHHHHHHHHHH
Q ss_conf ---------2----3330230368999872589
Q gi|254780846|r 160 ---------N----KSQIVSSSNIRTALTKGHV 179 (324)
Q Consensus 160 ---------~----~~~~ISSt~IR~~l~~Gdi 179 (324)
. .-..+|+|.+|++|++|..
T Consensus 327 ~~~~~~~~cph~~~~~~~~SGt~lR~~Lr~G~~ 359 (397)
T COG2046 327 GQMVSTKTCPHGDEHHLHISGTKLREMLRAGVK 359 (397)
T ss_pred CCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCC
T ss_conf 577342457999752388741899999975788
No 50
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=97.56 E-value=0.00056 Score=46.69 Aligned_cols=254 Identities=19% Similarity=0.169 Sum_probs=117.7
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCE-EEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCCCCHHHHH
Q ss_conf 931565028999999999995027977-99983798689847888662000078999988511--310002256405775
Q gi|254780846|r 24 IGNFDGIHLGHHLILEQAIKIANNSPI-TVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM--GFSALIRYKFTLETA 100 (324)
Q Consensus 24 iG~FDGvH~GHq~Li~~~~~~a~~~~~-~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~--Gid~vi~~~F~~~~a 100 (324)
=|+||-+|.||..+.+.+.+.-+-... .+-|..| |.++....++.+.|+.+++.. +.+.+.+-+|..+-.
T Consensus 7 GGSFDPiH~GHl~ia~~~~~~~~lDkv~~vPt~~~-------P~K~~~~~~~~~~Rl~Ml~la~~~~~~~~v~d~Ei~~~ 79 (343)
T PRK07152 7 GGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN-------PFKKKNKTSNGKDRLNMLKLALKNLPKIEVSDFEIKRQ 79 (343)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC-------CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHCC
T ss_conf 31778767999999999999809898999987979-------99999999999999999999963799759970296579
Q ss_pred HCCC-HHHHHHHHCCCC-C-EEEEEECCCCCCCCCCCCCHHHHHHHH----------------HCCCCEEEECCHHHCCC
Q ss_conf 2283-026888621427-8-029998345530337755602467751----------------01264167615223023
Q gi|254780846|r 101 NYSA-EQFIQKVLVEWL-E-VKTVITGTKFRFGKDRAGDRGILQKRG----------------EKYGFHTVFIDELRNNK 161 (324)
Q Consensus 101 ~ls~-e~Fi~~iL~~~l-~-~k~ivVG~Df~FG~~r~Gd~~~L~~~~----------------~~~g~~v~~i~~~~~~~ 161 (324)
..|. -+=++. |.+++ + -=.+++|+|--.....=-+.+.|.++| ++|++ .+++ ..
T Consensus 80 ~~sYTidTl~~-lk~~yp~~~~~fIiG~D~l~~~~~W~~~e~I~~~~~~vV~~R~~~~~~~~~~ky~~--~~l~----~~ 152 (343)
T PRK07152 80 NVSYTIDTINY-FKKKYPNDEIYFIIGSDNLENFKKWKNIEEILKKVQIVVFKRTKNINKINIKKYNF--LLLK----NK 152 (343)
T ss_pred CCCHHHHHHHH-HHHHCCCCCEEEEECHHHHHHCCCCCCHHHHHHHCCEEEEECCCCHHHHHHHCCCE--EEEC----CC
T ss_conf 98259999999-99878999799996378652331336999999839799998998322213431781--8856----88
Q ss_pred CCCCCHHHHHH-HHHHHHHHHHHHHHHHCCHHH------------------HHHHHCCCCCCEEEEEE------------
Q ss_conf 33023036899-987258999998500000000------------------01221002011011111------------
Q gi|254780846|r 162 SQIVSSSNIRT-ALTKGHVLNAAHLLGYRFTIE------------------SDVIHGEKIGRTLGFPT------------ 210 (324)
Q Consensus 162 ~~~ISSt~IR~-~l~~Gdi~~an~lLGr~y~i~------------------G~Vv~G~~~Gr~lGfPT------------ 210 (324)
.-.+|||-||+ -....--+.+++..+.+.-.. |...--.++++.-|...
T Consensus 153 ~~~~SSt~iR~~~~~~~~~~~V~~YI~~n~LY~~~~~~k~~ls~kRy~H~l~Va~~A~~LA~~~~~d~~kA~~AgllHD~ 232 (343)
T PRK07152 153 NLNISSTKIRNKGNLSLLDPKVLDYINENGLYAYDRLKKNLLDEERYNHCLRVAQLAVELAKKNNLDPKKAYYAGLYHDI 232 (343)
T ss_pred CCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 88876498866787021898999999746761018888853799999999999999999999959799999999999999
Q ss_pred ---------------EEEEHH---CCCC-CCHHHHEEE--EEEEECCCCCHHCCCCCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf ---------------211000---0222-310110002--4763056562110578997267797149999940678551
Q gi|254780846|r 211 ---------------ANMQLS---PDIL-LKEGVYAIR--FRTQDQTSYSGVANFGRNPTMVPNGPLLLESFIFDFSQEI 269 (324)
Q Consensus 211 ---------------aNi~~~---~~~~-p~~GVY~~~--v~~~~~~~~~~v~niG~~PT~~~~~~~~iE~hildf~~dl 269 (324)
.++.+. +.++ -+-|-|..+ ..+.|...+.||.+. |... ... ..
T Consensus 233 aK~~~~~~~~~~~~~~~~~~~~~~~~llH~~~ga~~~k~~~~i~D~eIL~AI~~H----TtG~-~~m-----------s~ 296 (343)
T PRK07152 233 TKEWDEEELLKYLKKYKIKLNNESWYVLHSYVGAYWLKHVYGIDDEEILNAIRNH----TVLY-EEM-----------ST 296 (343)
T ss_pred HCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC----CCCC-CCC-----------CH
T ss_conf 8159999999999981997554562212799999999998099979999999962----8389-996-----------85
Q ss_pred CCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8988999946000088746898999999999799999998
Q gi|254780846|r 270 YGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKIL 309 (324)
Q Consensus 270 Yg~~i~v~f~~~iR~e~kF~s~~~L~~qI~~D~~~a~~~l 309 (324)
.+ -.|+.-++|-|.++|+++++|++--.+|.+.|-...
T Consensus 297 Ld--kIiy~AD~iEp~R~~~~v~~lR~la~~dLd~a~~~~ 334 (343)
T PRK07152 297 LD--KIVYVADKIEPGRKYIGIQKLRKLAFKDLDKAFKEV 334 (343)
T ss_pred HH--HHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 56--344200024679999888999999998399999999
No 51
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.50 E-value=0.00056 Score=46.72 Aligned_cols=130 Identities=16% Similarity=0.255 Sum_probs=86.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCHHH
Q ss_conf 4999931565028999999999995027977999837986898478886620000789999885113-100022564057
Q gi|254780846|r 20 GVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMG-FSALIRYKFTLE 98 (324)
Q Consensus 20 ~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~G-id~vi~~~F~~~ 98 (324)
-+-|=|-||=+|.||-..++++.+....+-.+ +.-|..-+.. +.+ ...+.+.++|...|+.+. +|+++ .|+
T Consensus 334 vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg-~NsDaSvkrL-KG~--~RPin~~~~Ra~vLa~L~~VD~vV--~F~-- 405 (467)
T COG2870 334 VVFTNGCFDILHAGHVTYLAQARALGDRLIVG-VNSDASVKRL-KGE--SRPINSEEDRAAVLAALESVDLVV--IFD-- 405 (467)
T ss_pred EEEECCHHHHCCCCHHHHHHHHHHHCCEEEEE-ECCCHHHHHH-CCC--CCCCCCHHHHHHHHHHCCCCEEEE--EEC--
T ss_conf 88733403323453788999998638859999-5371244552-399--988882787899986315400899--827--
Q ss_pred HHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHH--HHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 7522830268886214278029998345530337755602467--75101264167615223023330230368999872
Q gi|254780846|r 99 TANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQ--KRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTK 176 (324)
Q Consensus 99 ~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~--~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~ 176 (324)
.=+|++-|+ .+.+.-+|=|-||. .+.+. +.-..+|-+|..++.. ++ .|+|.|=+-|.+
T Consensus 406 --EdTP~~LI~-----~~~PdilVKGgDy~--------~~~i~g~~~v~~~GG~v~~i~f~---~g--~STt~ii~ki~~ 465 (467)
T COG2870 406 --EDTPEELIE-----AVKPDILVKGGDYK--------IEKIVGADIVEAYGGEVLLIPFE---EG--KSTTKIIEKIRA 465 (467)
T ss_pred --CCCHHHHHH-----HHCCCEEECCCCCC--------HHHCCCHHHHHHCCCEEEEEECC---CC--CCHHHHHHHHHC
T ss_conf --999899998-----73866587068887--------24403236655339759998644---68--738999999861
Q ss_pred H
Q ss_conf 5
Q gi|254780846|r 177 G 177 (324)
Q Consensus 177 G 177 (324)
+
T Consensus 466 ~ 466 (467)
T COG2870 466 K 466 (467)
T ss_pred C
T ss_conf 5
No 52
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=97.49 E-value=0.00027 Score=48.76 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=72.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCCCC-CCCHH
Q ss_conf 99993156502899999999999502797799983798689847888662000078999988511--3100022-56405
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM--GFSALIR-YKFTL 97 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~--Gid~vi~-~~F~~ 97 (324)
++-=|.||-+|.||..+++++.++-.+.-.+ +.- ++++. .+.+.++|..++++. .++.+-+ ..|+
T Consensus 4 aiypGSFDPiT~GHlDIi~RA~~lFD~viV~-V~~--------N~~K~--~lfs~eeR~~~i~~~~~~~~nv~V~~~~~- 71 (140)
T PRK13964 4 AIYPGSFDPFHNGHINILKKALKLFDKVYVV-VSI--------NPDKS--LDTDIDSRFTNIKNKIKDFDNVEVLINED- 71 (140)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHCCEEEEE-EEC--------CCCCC--CCCCHHHHHHHHHHHHHCCCCCEEEECCC-
T ss_conf 9979887988542899999999868989998-842--------79998--89999998898999975469968972378-
Q ss_pred HHHHCCCHHHHHHHHCCCCCEEEEEEC----CCCCCCCCCCCCHHHHH-HHHHCCCCEEEECCHHHCCCCCCCCHHHHHH
Q ss_conf 775228302688862142780299983----45530337755602467-7510126416761522302333023036899
Q gi|254780846|r 98 ETANYSAEQFIQKVLVEWLEVKTVITG----TKFRFGKDRAGDRGILQ-KRGEKYGFHTVFIDELRNNKSQIVSSSNIRT 172 (324)
Q Consensus 98 ~~a~ls~e~Fi~~iL~~~l~~k~ivVG----~Df~FG~~r~Gd~~~L~-~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~ 172 (324)
.|. -+|. ++.++..|+=| .||-+=..-+ ... .+. -+++++.+.+- .+-.-||||.||+
T Consensus 72 ---gL~-vd~a-----~~~~a~~ivRGlR~~~DfeyE~~mA----~~Nr~l~--~~IETvFl~~~--~~~~~iSSslVrE 134 (140)
T PRK13964 72 ---KLT-AEIA-----KKLGANFIIRSARNQIDFQYEIVLA----AGNKSLN--PNLETILIMPD--YDKIEYSSTLLRH 134 (140)
T ss_pred ---CCH-HHHH-----HHCCCCEEEECCCCCCHHHHHHHHH----HHHHHCC--CCCCEEEECCC--CCCCEEEHHHHHH
T ss_conf ---639-9999-----9869999996798751089999999----9998528--99758997589--7773753799999
Q ss_pred HHH
Q ss_conf 987
Q gi|254780846|r 173 ALT 175 (324)
Q Consensus 173 ~l~ 175 (324)
...
T Consensus 135 ia~ 137 (140)
T PRK13964 135 IKF 137 (140)
T ss_pred HHH
T ss_conf 997
No 53
>PRK13671 hypothetical protein; Provisional
Probab=97.37 E-value=0.00088 Score=45.41 Aligned_cols=106 Identities=24% Similarity=0.317 Sum_probs=76.2
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCE-EEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHC
Q ss_conf 931565028999999999995027977-9998379868984788866200007899998851131000225640577522
Q gi|254780846|r 24 IGNFDGIHLGHHLILEQAIKIANNSPI-TVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANY 102 (324)
Q Consensus 24 iG~FDGvH~GHq~Li~~~~~~a~~~~~-~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~l 102 (324)
|-=|.-+|-||.-.|+++++....... +||+ -.|.+-..| -+.+.-.|.++--..|+|-|+.+|| -++--
T Consensus 6 IaEYNPFHnGH~Yhi~qar~~~~ad~iIavMS-----GnFvQRGEP--Ai~dKw~Ra~~AL~~G~DLViELP~--~ya~q 76 (298)
T PRK13671 6 IAEYNPFHNGHIYQINYIKNKFPNEKIIIILS-----GKYTQRGEI--AVASFEKRKKIALKYGVDKVIKLPF--EYATQ 76 (298)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCEEEEEEC-----CCCCCCCCC--HHCCHHHHHHHHHHCCCCEEEECCH--HHHHC
T ss_conf 97207974018999999998659985999945-----885208861--1178889999999849998998866--99871
Q ss_pred CCHHHHH---HHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 8302688---8621427802999834553033775560246775101
Q gi|254780846|r 103 SAEQFIQ---KVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEK 146 (324)
Q Consensus 103 s~e~Fi~---~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~ 146 (324)
||+.|-. .+| +.+++..++-|.. .||.+.|++.++.
T Consensus 77 sAe~FA~gaV~lL-~~lgvd~l~FGsE-------~~d~~~l~~~A~~ 115 (298)
T PRK13671 77 AAHIFAKGAIKKL-NKHKIDKLIFGSE-------SNDVELMYKIAKL 115 (298)
T ss_pred CHHHHHHHHHHHH-HHCCCCEEEEECC-------CCCHHHHHHHHHH
T ss_conf 5999999999999-9869997997268-------8989999999999
No 54
>pfam05636 DUF795 Protein of unknown function (DUF795). This family consists of several bacterial proteins of unknown function.
Probab=97.36 E-value=0.00095 Score=45.22 Aligned_cols=105 Identities=24% Similarity=0.321 Sum_probs=73.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCE-EEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9931565028999999999995027977-999837986898478886620000789999885113100022564057752
Q gi|254780846|r 23 AIGNFDGIHLGHHLILEQAIKIANNSPI-TVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETAN 101 (324)
Q Consensus 23 tiG~FDGvH~GHq~Li~~~~~~a~~~~~-~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ 101 (324)
-|-=|.-+|-||...|+++++....... +||+ -.|.+-..| -+.+.-.|.++--..|+|-|+.+|+ -++-
T Consensus 6 IIaEYNPFHnGH~Yhi~~ar~~~~~d~iIavMS-----GnFvQRGEP--Ai~dKw~Ra~~AL~~GaDLViELP~--~ya~ 76 (389)
T pfam05636 6 IIVEYNPFHNGHLYHLNEAKKLTKADVKIAVMS-----GNFVQRGEP--AIIDKWERAKMALSSGADLVIELPV--TYST 76 (389)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEC-----CCCCCCCCC--HHCCHHHHHHHHHHCCCCEEEECCH--HHHH
T ss_conf 996107974018999999998649985999944-----885218862--0078889999999849998998865--9886
Q ss_pred CCCHHHHH---HHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 28302688---86214278029998345530337755602467751
Q gi|254780846|r 102 YSAEQFIQ---KVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRG 144 (324)
Q Consensus 102 ls~e~Fi~---~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~ 144 (324)
-||+.|-. .+| +.+++..++-|... ||.+.|.+.+
T Consensus 77 qsAe~FA~gaV~lL-~~lgvd~l~FGsE~-------~d~~~l~~~a 114 (389)
T pfam05636 77 QSADIFAEGAVSIL-DSLGIDTLAFGSEE-------GDIEDLKKIA 114 (389)
T ss_pred CCHHHHHHHHHHHH-HHCCCCEEEECCCC-------CCHHHHHHHH
T ss_conf 15999999999999-98699989965888-------9899999999
No 55
>PRK13670 hypothetical protein; Provisional
Probab=97.33 E-value=0.001 Score=45.00 Aligned_cols=105 Identities=26% Similarity=0.368 Sum_probs=72.9
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCE-EEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHC
Q ss_conf 931565028999999999995027977-9998379868984788866200007899998851131000225640577522
Q gi|254780846|r 24 IGNFDGIHLGHHLILEQAIKIANNSPI-TVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANY 102 (324)
Q Consensus 24 iG~FDGvH~GHq~Li~~~~~~a~~~~~-~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~l 102 (324)
|-=+.-+|-||.-.|+++++....... +||+ -.|.+-+.| -+.+.-.|.++--..|+|-|+.+|+ -+|--
T Consensus 7 IaEYNPFHnGH~Yhi~~ar~~t~ad~iIaVMS-----GnFvQRGEP--Ai~dKw~Ra~~AL~~GaDLViELP~--~ya~q 77 (390)
T PRK13670 7 IVEYNPFHNGHLYHLNQAKKLTKADVTIAVMS-----GNFVQRGEP--AIVDKWTRAKMALANGADLVVELPF--VFAVQ 77 (390)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCEEEEEEC-----CCCCCCCCC--HHCCHHHHHHHHHHCCCCEEEECCH--HHHHC
T ss_conf 96107974108999999997539987999943-----885108872--0078789999999859988998865--98862
Q ss_pred CCHHHHH---HHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 8302688---862142780299983455303377556024677510
Q gi|254780846|r 103 SAEQFIQ---KVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGE 145 (324)
Q Consensus 103 s~e~Fi~---~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~ 145 (324)
||+.|-. .+| +.+++..++-|.. .||.+.|.+.++
T Consensus 78 sAe~FA~gaV~lL-~~lgvd~l~FGsE-------~~d~~~l~~~a~ 115 (390)
T PRK13670 78 SADYFAEGAVSIL-DALGVDDLVFGSE-------SGDIEDFQKLAK 115 (390)
T ss_pred CHHHHHHHHHHHH-HHCCCCEEEECCC-------CCCHHHHHHHHH
T ss_conf 5999999999999-9869998996688-------898999999999
No 56
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=97.30 E-value=0.00086 Score=45.48 Aligned_cols=154 Identities=17% Similarity=0.198 Sum_probs=90.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9931565028999999999995027-977999837986898478886620000789999885113100022564057752
Q gi|254780846|r 23 AIGNFDGIHLGHHLILEQAIKIANN-SPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETAN 101 (324)
Q Consensus 23 tiG~FDGvH~GHq~Li~~~~~~a~~-~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ 101 (324)
-|=-||.+|-||+.+|++|.+..+. ...++++ ..|.+-+.+ .+-+..+|.+.--+.|+|.|+.+|+. ++.
T Consensus 6 ii~eyNPfHnGH~y~l~~Ar~~~~~d~~i~~ms-----gdf~qRgep--ai~~k~~r~k~aL~~g~D~VIelP~~--~s~ 76 (358)
T COG1323 6 IIAEYNPFHNGHQYHINKAREEFKGDEIIAVMS-----GDFTQRGEP--AIGHKWERKKMALEGGADLVIELPLE--RSG 76 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEE-----CCHHHCCCC--CCCCHHHHHHHHHHCCCEEEEECCEE--EEC
T ss_conf 886536776658999999887526771489842-----513305997--40648999888874496299976557--863
Q ss_pred CCCHHHHH--HHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCC-----CEEEECCHHHCCCCCCCCHHHHHHHH
Q ss_conf 28302688--862142780299983455303377556024677510126-----41676152230233302303689998
Q gi|254780846|r 102 YSAEQFIQ--KVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYG-----FHTVFIDELRNNKSQIVSSSNIRTAL 174 (324)
Q Consensus 102 ls~e~Fi~--~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g-----~~v~~i~~~~~~~~~~ISSt~IR~~l 174 (324)
-++.-|.. --+.+.+++..|++|..- +|+..|.++.+-.- ++..+.+.. +++ .|=-...+.+
T Consensus 77 q~a~~fa~~av~il~~l~~~~i~fgse~-------~~i~~~~~~a~~~~~~~~~~~~~i~~~~--~~g--~s~p~a~~~~ 145 (358)
T COG1323 77 QGAPYFATRAVRILNALGGDDIAFGSPP-------MGIMGLGQYAECLAEMFRELDAIIKERL--YNG--KSYPKAISYA 145 (358)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHH--HCC--CCCHHHHHHH
T ss_conf 7773346889999984599827973899-------7647899999999834888765667764--245--3619999999
Q ss_pred HHH--------HHHHHHHHHHHCCHHHHHH
Q ss_conf 725--------8999998500000000012
Q gi|254780846|r 175 TKG--------HVLNAAHLLGYRFTIESDV 196 (324)
Q Consensus 175 ~~G--------di~~an~lLGr~y~i~G~V 196 (324)
-.+ ++..-|..||..|...=.+
T Consensus 146 ~~~~~~~~~~~~~~~~N~ILg~~y~~a~~~ 175 (358)
T COG1323 146 NKGYRGSVEKLDLDKPNNILGLEYVKAIYV 175 (358)
T ss_pred HHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 988436610340478400567999998754
No 57
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.11 E-value=0.0031 Score=41.86 Aligned_cols=148 Identities=20% Similarity=0.204 Sum_probs=92.3
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC-----------CCCCCCC
Q ss_conf 93156502899999999999502797799983798689847888662000078999988511-----------3100022
Q gi|254780846|r 24 IGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM-----------GFSALIR 92 (324)
Q Consensus 24 iG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~-----------Gid~vi~ 92 (324)
+=|=.-+-+|||.|+++|-+...-.-+-++ +-+. .+.+.++|..+..+- |-||++.
T Consensus 151 VMNANPFTLGH~YLVEqAaaqcDwlHLFvV----------~eD~---S~f~y~~R~~Lv~~G~~~l~Nvt~HsgsdYiIS 217 (352)
T COG3053 151 VMNANPFTLGHRYLVEQAAAQCDWLHLFVV----------KEDS---SLFPYEDRLDLVKKGTADLPNVTVHSGSDYIIS 217 (352)
T ss_pred EECCCCCCCHHHHHHHHHHHHCCEEEEEEE----------ECCC---CCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEE
T ss_conf 970798652159999999965898999998----------2454---548878999999976513774689628876887
Q ss_pred C-CC-----------HHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCC-----CEEEECC
Q ss_conf 5-64-----------05775228302688862142780299983455303377556024677510126-----4167615
Q gi|254780846|r 93 Y-KF-----------TLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYG-----FHTVFID 155 (324)
Q Consensus 93 ~-~F-----------~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g-----~~v~~i~ 155 (324)
- .| ++.-.+++.+-|- +.+...|+.-+=.||..=-.---+.=| +.+..|-..-+ +++++|+
T Consensus 218 rATFP~YFiKeq~vv~~s~t~iDl~iFr-~~iA~aLgIThRfVG~EP~c~vT~~YN-q~M~~~L~~~~~~~p~I~vvei~ 295 (352)
T COG3053 218 RATFPAYFIKEQSVVNDSQTEIDLKIFR-KYIAPALGITHRFVGTEPFCRVTAIYN-QQMRYWLEDPTISAPPIEVVEIE 295 (352)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCEEEECCCCCCHHHHHHH-HHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 2246055530177787788887799999-987887386102325788867789999-99999872567789962899940
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22302333023036899987258999998500
Q gi|254780846|r 156 ELRNNKSQIVSSSNIRTALTKGHVLNAAHLLG 187 (324)
Q Consensus 156 ~~~~~~~~~ISSt~IR~~l~~Gdi~~an~lLG 187 (324)
-.+. .+.+||.|++|++|+++|.+....|.-
T Consensus 296 Rk~~-~~~~ISAS~VR~~l~~~~~~~ia~lVP 326 (352)
T COG3053 296 RKKY-QEMPISASRVRQLLAKNDLEAIANLVP 326 (352)
T ss_pred HHHH-CCCCCCHHHHHHHHHHCCHHHHHHHCC
T ss_conf 1231-478634899999987089999974373
No 58
>pfam01747 ATP-sulfurylase ATP-sulfurylase. This family consists of ATP-sulfurylase or sulfate adenylyltransferase EC:2.7.7.4 some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase pfam01583. Both enzymes are required for PAPS (phosphoadenosine-phosphosulfate) synthesis from inorganic sulphate. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulfate APS from ATP and inorganic sulphate.
Probab=97.11 E-value=0.01 Score=38.57 Aligned_cols=147 Identities=17% Similarity=0.261 Sum_probs=86.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHH----HHHHC-CCCCCCCC
Q ss_conf 84999931565028999999999995027977999837986898478886620000789999----88511-31000225
Q gi|254780846|r 19 GGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK----ILEKM-GFSALIRY 93 (324)
Q Consensus 19 ~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~----~l~~~-Gid~vi~~ 93 (324)
..|++.=.-.-+|+||..|++.+.+.+.+ +++.+ ++.+.++.. .+.+-+.+ +++.+ .-+.+++.
T Consensus 117 ~~VvafqTrnp~Hr~He~i~~~a~e~~~~---lli~p------lvG~~k~gD--~~~~~r~~~~~~l~~~y~p~~~~~l~ 185 (310)
T pfam01747 117 KTVVAFQTRNPMHRAHEYLMKRALEKGDG---LLLHP------LVGETKPGD--IPAEVRVRAYEALLENYFPPDRVLLA 185 (310)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCCC---EEEEE------CCCCCCCCC--CCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 61689971788866899999999974694---69985------226777887--78799999999999733897529996
Q ss_pred CC--HHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCC-----CCCCCCCHHHHHHHHHCCCCEEEECCHHHCC------
Q ss_conf 64--0577522830268886214278029998345530-----3377556024677510126416761522302------
Q gi|254780846|r 94 KF--TLETANYSAEQFIQKVLVEWLEVKTVITGTKFRF-----GKDRAGDRGILQKRGEKYGFHTVFIDELRNN------ 160 (324)
Q Consensus 94 ~F--~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~F-----G~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~------ 160 (324)
.+ +..+| =.-|..+..++.+.+++.+++||-|+.- |... --+.+.++.++.|++++..+++...
T Consensus 186 ~l~~~mryA-GPrEallhAiirkN~GcthfivGrdHAG~g~fY~~~~--aq~i~~~~~~~l~I~iv~~~~~~Yc~~~~~~ 262 (310)
T pfam01747 186 PLPLAMRYA-GPREALLHAIIRKNYGCTHFIVGRDHAGVGDYYGPYD--AQEIFDEFAGELGIEPVPFREAFYCKKCGGM 262 (310)
T ss_pred CCCCCCCCC-CCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHH--HHHHHHHCCCCCCCEEEECCCCEEECCCCEE
T ss_conf 147640226-7178899999999769972655665578423589168--8999985663468415864753886556828
Q ss_pred ---------CC--CCCCHHHHHHHHHHHHH
Q ss_conf ---------33--30230368999872589
Q gi|254780846|r 161 ---------KS--QIVSSSNIRTALTKGHV 179 (324)
Q Consensus 161 ---------~~--~~ISSt~IR~~l~~Gdi 179 (324)
.. ..+|+|.||++|.+|..
T Consensus 263 v~~~~c~h~~~~~~~isgt~iR~~L~~G~~ 292 (310)
T pfam01747 263 VSTKTCPHGKEDRLFISGTKLREMLREGEE 292 (310)
T ss_pred EECCCCCCCCCCEECCCHHHHHHHHHCCCC
T ss_conf 763557997554044178999999987798
No 59
>PTZ00308 ethanolamine-phosphate cytidylytransferase; Provisional
Probab=97.10 E-value=0.014 Score=37.69 Aligned_cols=138 Identities=14% Similarity=0.203 Sum_probs=77.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC-CCCCCCC-CCC
Q ss_conf 8499993156502899999999999502797799-983798689847888662000078999988511-3100022-564
Q gi|254780846|r 19 GGVVAIGNFDGIHLGHHLILEQAIKIANNSPITV-LSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM-GFSALIR-YKF 95 (324)
Q Consensus 19 ~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~v-iTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~-Gid~vi~-~~F 95 (324)
..|.+=|.||-+|.||.+.|+++++.... ++| +.-| ..+...+.....++++.||..-+.+. -+|.|+. -||
T Consensus 193 kIVYvDG~FDLFH~GHi~~L~~ak~~g~y--LIVGv~~D---~~v~~~KG~nyPImnl~ER~l~vl~CkyVDeVi~~aP~ 267 (353)
T PTZ00308 193 RIVYVDGSFDLFHIGHIRVLQKARELGDY--LIVGVHED---QVVNEQKGSNYPIMNLNERVLGVLSCRYVDEVVIGAPF 267 (353)
T ss_pred EEEEEECCHHCCCHHHHHHHHHHHHCCCE--EEEEECCC---HHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 79998086022677899999999851998--99995781---89897448998866799999987620225626658998
Q ss_pred HHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHH
Q ss_conf 05775228302688862142780299983455303377556024677510126416761522302333023036899987
Q gi|254780846|r 96 TLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALT 175 (324)
Q Consensus 96 ~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~ 175 (324)
.. .++|+++ +++..++-|.+ .+-....+.. +.-+..++.|+-.. ++. ..-+|++.|=+-|.
T Consensus 268 ~~------t~~~i~~-----~~id~V~hG~~-~~~~~~~~~~-DpY~~pK~~Gif~~-i~s-----~~~itT~~IV~RIi 328 (353)
T PTZ00308 268 DV------TKEVIDS-----LHINVVVGGKF-SDLVNEEGGS-DPYEVPKAMGIFKE-VDS-----GCDLTTDSIVDRVV 328 (353)
T ss_pred CC------CHHHHHH-----CCCCEEEECCC-CCCCCCCCCC-CCCHHHHHCCCEEE-CCC-----CCCCCHHHHHHHHH
T ss_conf 67------8999986-----79988982886-6556677878-82441787697583-488-----89978999999999
Q ss_pred HHHHH
Q ss_conf 25899
Q gi|254780846|r 176 KGHVL 180 (324)
Q Consensus 176 ~Gdi~ 180 (324)
...-.
T Consensus 329 knr~~ 333 (353)
T PTZ00308 329 KNRLA 333 (353)
T ss_pred HHHHH
T ss_conf 74999
No 60
>KOG3042 consensus
Probab=96.95 E-value=0.00032 Score=48.32 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=87.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCH--
Q ss_conf 849999315650289999999999950279779998379868984788866200007899998851131000225640--
Q gi|254780846|r 19 GGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFT-- 96 (324)
Q Consensus 19 ~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~-- 96 (324)
+.|-|+|+ +|-||-.|+.+.++.+. .+|++..-+|..|-.++.-..+-.+..+.+..|+++|+|.++...-.
T Consensus 27 gfVPTMG~---LHeGH~SLvrqs~~~~~---~tVVSIfVNP~QF~pteDL~~YPrt~~~D~~~L~~LgvdvvfaP~v~~~ 100 (283)
T KOG3042 27 GFVPTMGC---LHEGHASLVRQSVKENT---YTVVSIFVNPSQFAPTEDLDNYPRTLPDDIKLLESLGVDVVFAPNVHVM 100 (283)
T ss_pred EEECCCCC---CCCCHHHHHHHHHHHCC---EEEEEEEECHHHCCCHHHHHCCCCCCCCHHHHHHHCCCEEEECCCEEEE
T ss_conf 77525443---23108899999886274---6999999662436986676308766753789998649508976860686
Q ss_pred ------------------HHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEE--EECCH
Q ss_conf ------------------5775228302688862142780299983455303377556024677510126416--76152
Q gi|254780846|r 97 ------------------LETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHT--VFIDE 156 (324)
Q Consensus 97 ------------------~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v--~~i~~ 156 (324)
+.+-.-|--.|++-+-.---+.-+||--.=..||.+---....++++-+..+|.+ .-+|-
T Consensus 101 ypeG~~~~~tfv~V~~Ls~~leGksRP~fFRGVaTvVtKLFnIV~pDVA~FG~KD~QQ~~iiq~MVrdLnf~iei~~~pI 180 (283)
T KOG3042 101 YPEGIPLKGTFVSVLGLSEKLEGKSRPNFFRGVATVVTKLFNIVMPDVAYFGQKDIQQFIIIQCMVRDLNFNIEIQMMPI 180 (283)
T ss_pred CCCCCCCCCCEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCE
T ss_conf 25788777635860203554157778741011899999988762730666351107899999999986235518985213
Q ss_pred HHCCCCCCCCHHHHH
Q ss_conf 230233302303689
Q gi|254780846|r 157 LRNNKSQIVSSSNIR 171 (324)
Q Consensus 157 ~~~~~~~~ISSt~IR 171 (324)
++.++|-..||.+.+
T Consensus 181 vR~~dGLAlSSRN~y 195 (283)
T KOG3042 181 VRNNDGLALSSRNKY 195 (283)
T ss_pred EECCCCEEEECCCCC
T ss_conf 773786135126764
No 61
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=96.95 E-value=0.015 Score=37.38 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=76.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCC--CCC---C
Q ss_conf 499993156502899999999999502797799983798689847888662000078999988511--310--002---2
Q gi|254780846|r 20 GVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM--GFS--ALI---R 92 (324)
Q Consensus 20 ~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~--Gid--~vi---~ 92 (324)
..|-||-|.-+|.||..+|..+.+.|++.-.++=+=+. |+ + ...-.+.+||..+++.. +.| .+. +
T Consensus 7 ~~VfIGRFqPfH~gHl~~i~~AL~~a~~vivliGSa~~-~r-----~--~kNPft~~ER~~Mir~~l~~~~~~Rv~~~pv 78 (340)
T PRK05379 7 YLVFIGRFQPFHRGHLAVIREALERAKKVIVLIGSADL-AR-----T--IKNPFSFEERAQMIEAALDGADLDRVHIRPL 78 (340)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCC-CC-----C--CCCCCCHHHHHHHHHHHCCHHHCCEEEEEEC
T ss_conf 89999715987478999999999732808999825778-99-----8--9898998999999998669422160699835
Q ss_pred CC--CHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHH
Q ss_conf 56--4057752283026888621427802999834553033775560246775101264167615223023330230368
Q gi|254780846|r 93 YK--FTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNI 170 (324)
Q Consensus 93 ~~--F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~I 170 (324)
.+ ||.+...-..++=+..+... ..+...||. .+-.+.-+|+.+- +.+.+.++.+ ..||+|-|
T Consensus 79 ~D~~Ynd~~W~~~Vq~~V~~~~~~--~~~i~lvGh------~KD~sSyYL~~FP---~W~~v~~~~~-----~~isAT~i 142 (340)
T PRK05379 79 RDHLYNDQLWLAEVQAAVAEHAGD--DASIGLIGH------EKDASSYYLRSFP---QWELVDVDNY-----EDLSATEI 142 (340)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCC--CCCEEEEEC------CCCCCHHHHHHCC---CCCEECCCCC-----CCCCCCHH
T ss_conf 765568799999999999984588--870788603------5675268997488---8750447765-----88685078
Q ss_pred HHHHH
Q ss_conf 99987
Q gi|254780846|r 171 RTALT 175 (324)
Q Consensus 171 R~~l~ 175 (324)
|++.-
T Consensus 143 R~~~f 147 (340)
T PRK05379 143 RDAYF 147 (340)
T ss_pred HHHHH
T ss_conf 99997
No 62
>cd00517 ATPS ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be a monomer, a hom
Probab=96.94 E-value=0.014 Score=37.54 Aligned_cols=151 Identities=18% Similarity=0.214 Sum_probs=81.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHH----HHHC-CCCCCC--C
Q ss_conf 49999315650289999999999950279779998379868984788866200007899998----8511-310002--2
Q gi|254780846|r 20 GVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKI----LEKM-GFSALI--R 92 (324)
Q Consensus 20 ~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~----l~~~-Gid~vi--~ 92 (324)
+|++.=.=.-+|+||..|++.|.+.+......++ ||. ..+.++.. .+.+-|.+- ++.+ .-+.++ .
T Consensus 158 ~VvaFqTRNp~HraHe~l~~~Ale~~~~~~~lli----~P~--vG~~k~gD--~~~~~r~~~y~~l~~~y~p~~~~~l~~ 229 (356)
T cd00517 158 TVVAFQTRNPMHRAHEELMKRALERLLENDGLLL----HPL--VGWTKPGD--VPDEVRMRAYEALLEEYYLPERTVLAI 229 (356)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE----EEC--CCCCCCCC--CCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 5888731899974799999999997143871899----733--36788889--898999999999997068986089984
Q ss_pred CCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCC-CCC----CCCCCHHHH-HHHH-HCCCCEEEECCHHH-C-----
Q ss_conf 564057752283026888621427802999834553-033----775560246-7751-01264167615223-0-----
Q gi|254780846|r 93 YKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFR-FGK----DRAGDRGIL-QKRG-EKYGFHTVFIDELR-N----- 159 (324)
Q Consensus 93 ~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~-FG~----~r~Gd~~~L-~~~~-~~~g~~v~~i~~~~-~----- 159 (324)
++.+..+|.=. |.-...++.+.+++.+++||-|+. -|+ -..-+.+.| .++. .+.|++++..+++. +
T Consensus 230 ~p~~mryAGPr-EAl~hAiiRkN~GcthfiVGRDHAG~g~~~~fY~~y~aq~i~~~~~~~~l~I~~v~~~~~~Yc~~c~~ 308 (356)
T cd00517 230 LPLAMRYAGPR-EALWHAIIRKNYGATHFIVGRDHAGVGHPEDYYGPYDAQEIFKKYPMGELGIEPVPFREAAYCPKCLG 308 (356)
T ss_pred CCCCCCCCCHH-HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCE
T ss_conf 24543555558-89999999997699658876766788887577884156899985486678637997663699867791
Q ss_pred -----------CCCCCCCHHHHHHHHHHHHH
Q ss_conf -----------23330230368999872589
Q gi|254780846|r 160 -----------NKSQIVSSSNIRTALTKGHV 179 (324)
Q Consensus 160 -----------~~~~~ISSt~IR~~l~~Gdi 179 (324)
..-..||.|.||++|.+|..
T Consensus 309 ~~~~~~cph~~~~~~~iSGt~iR~~L~~G~~ 339 (356)
T cd00517 309 MVFADTCPHHKEDFLNISGTKMREMLREGEK 339 (356)
T ss_pred EEECCCCCCCCCCEEECCHHHHHHHHHCCCC
T ss_conf 8876667999774585178999999977698
No 63
>cd02168 NMNAT_Nudix This domain represents the N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and #Nudix' hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=96.93 E-value=0.0046 Score=40.75 Aligned_cols=133 Identities=18% Similarity=0.178 Sum_probs=68.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHH----CCCCCCCCCCC--
Q ss_conf 999315650289999999999950279779998379868984788866200007899998851----13100022564--
Q gi|254780846|r 22 VAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEK----MGFSALIRYKF-- 95 (324)
Q Consensus 22 vtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~----~Gid~vi~~~F-- 95 (324)
|-||-|+-+|.||..+++.+.+.+...-.+ +--... ... ...-.+.+||..++.+ .+...+.++|-
T Consensus 2 v~iGRFqPfH~GHl~~i~~al~~~~~vii~-iGSa~~-----~~~--~~nPft~~ER~~Mi~~~l~~~d~~R~~~~pv~D 73 (179)
T cd02168 2 VYIGRFQPFHLGHLQVIRIALEQAREVIIL-IGSART-----ARN--IKNPWTSEEREQMIRAALSDEDLARVHFRPLRD 73 (179)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHCCEEEEE-EECCCC-----CCC--CCCCCCHHHHHHHHHHHCCHHCCCEEEEEECCC
T ss_conf 162468998578999999999638937999-968899-----998--899989999999999970564187599997888
Q ss_pred ---HHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHH
Q ss_conf ---05775228302688862142780299983455303377556024677510126416761522302333023036899
Q gi|254780846|r 96 ---TLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRT 172 (324)
Q Consensus 96 ---~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~ 172 (324)
|.+...-.-+..+..+. ..+.....||..+ +.++ -.|+.+- +.+.+.++. .+.+|+|.||+
T Consensus 74 ~~yn~~~Wv~~V~~~V~~~~--~~~~~v~lvg~~k----d~ss--yyl~~FP---~w~~v~~~~-----~~~~saT~IR~ 137 (179)
T cd02168 74 HLYNDNLWVADVQQKVLAIA--GPEASIGLIGHRK----DESS--YYLRLFP---QWDYVEVPN-----YSDLSATDIRD 137 (179)
T ss_pred CCCCHHHHHHHHHHHCCCCC--CCCCCCEEEEEEE----CCCC--EEEECCC---CCCEEECCC-----CCCCCCHHHHH
T ss_conf 88887999999999576113--6898705888860----6753--2555067---863443676-----57667559999
Q ss_pred HHHHHH
Q ss_conf 987258
Q gi|254780846|r 173 ALTKGH 178 (324)
Q Consensus 173 ~l~~Gd 178 (324)
++-.|+
T Consensus 138 ~~~~g~ 143 (179)
T cd02168 138 AYFEGS 143 (179)
T ss_pred HHHCCC
T ss_conf 998688
No 64
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain; InterPro: IPR004821 Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.; GO: 0003824 catalytic activity, 0009058 biosynthetic process.
Probab=96.85 E-value=0.0022 Score=42.85 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=40.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99993156502899999999999502797799983798689847888662000078999988511
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM 85 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~ 85 (324)
+++.|+||.+|.||..+++++.+... -.+.+..++ ...+.+ .+.+.++|...++..
T Consensus 2 ~~~~G~fdp~h~GH~~~~~~~~~~~~--~~~~~~~~~----~~~~~~---~~~~~~~r~~~~~~~ 57 (63)
T TIGR00125 2 VIFGGTFDPLHLGHLDLLERAKELGD--LIVGVGSDE----FVNPLK---PVFSLEERLELLKAL 57 (63)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCC--EEEEECCCC----CCCCCC---CCCCHHHHHHHHHHH
T ss_conf 34067755555547999999997589--367533620----112457---767988999999876
No 65
>KOG3351 consensus
Probab=96.70 E-value=0.0041 Score=41.06 Aligned_cols=138 Identities=16% Similarity=0.235 Sum_probs=79.3
Q ss_pred EEEEE-ECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC----CCCCCC-CC
Q ss_conf 49999-3156502899999999999502797799983798689847888662000078999988511----310002-25
Q gi|254780846|r 20 GVVAI-GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM----GFSALI-RY 93 (324)
Q Consensus 20 ~vvti-G~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~----Gid~vi-~~ 93 (324)
-++|+ |.||-+|-||+-|+..+-..|...-.+=+|= .+.+.++....+|-+.++|.+-+.++ ..|-.+ +.
T Consensus 143 ~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d----~elL~kK~~~Eliepie~R~~~V~~Fl~~IKp~l~~~~v 218 (293)
T KOG3351 143 MVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTD----DELLKKKVLKELIEPIEERKEHVSNFLKSIKPDLNVRVV 218 (293)
T ss_pred EEEEECCCHHHHCCCHHHHHHHHHHHHHCEEEEEECC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 0677311002221405889999998731448998547----699877678998634999999999999864877368899
Q ss_pred CCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHH
Q ss_conf 64057752283026888621427802999834553033775560246775101264167615223023330230368999
Q gi|254780846|r 94 KFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTA 173 (324)
Q Consensus 94 ~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~ 173 (324)
|.. +-|=-.+ .......+||.+.-.=|..+- |-.-+++=-.+ ..+.+|+-+ .+++++|||-+|++
T Consensus 219 pi~--------Dp~GPt~--~d~elE~lVVS~ET~~Ga~aV-Nr~R~E~glse--Lai~vVell--~~~~kls~t~~~~~ 283 (293)
T KOG3351 219 PIH--------DPFGPTI--TDPELEALVVSEETKTGATAV-NRKRVERGLSE--LAIYVVELL--YDAQKLSSTENREL 283 (293)
T ss_pred ECC--------CCCCCCC--CCCCCEEEEEEECCCCCHHHH-HHHHHHCCCCH--HEEEEEEEC--CCHHHCCHHHHHHH
T ss_conf 633--------6878876--677604899860221505566-28888769760--008988630--67323164677776
Q ss_pred HHH
Q ss_conf 872
Q gi|254780846|r 174 LTK 176 (324)
Q Consensus 174 l~~ 176 (324)
...
T Consensus 284 kvS 286 (293)
T KOG3351 284 KVS 286 (293)
T ss_pred HHC
T ss_conf 521
No 66
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=96.64 E-value=0.012 Score=38.04 Aligned_cols=160 Identities=15% Similarity=0.179 Sum_probs=86.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCC--CCCCCCHHH
Q ss_conf 999931565028999999999995027977999837986898478886620000789999885113100--022564057
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSA--LIRYKFTLE 98 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~--vi~~~F~~~ 98 (324)
.+-+|-|--+|.||.++++.+.+.+...-. ++-.+.-+....+|..+...+...+. .|++.|+|. .+..=||-+
T Consensus 6 gv~~GRFqP~H~GHl~vi~~al~~vdeliI-~iGSa~~~~t~~nPfTagER~~mi~~---~L~~~~~~~r~~~~~v~d~~ 81 (172)
T COG1056 6 GVYFGRFQPLHTGHLYVIKRALSKVDELII-VIGSAQESHTLKNPFTAGERIPMIRD---RLREAGLDLRVYLRPVFDIE 81 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCEEEE-EECCCCCCCCCCCCCCCCCHHHHHHH---HHHHCCCCCEEEEEECCCCC
T ss_conf 899865679647699999999975897999-97627645544699975400699999---99865877428999647620
Q ss_pred HHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 75228302688862142780299983455303377556024677510126416761522302333023036899987258
Q gi|254780846|r 99 TANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGH 178 (324)
Q Consensus 99 ~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~Gd 178 (324)
..++-. .+++... . +.-++ ++ || .....+..+.|.++..- ++. +..+ .|.|.||..+..||
T Consensus 82 ~n~i~v-~~v~~~~-p----~~~~~-----~~----~n-~~v~~lf~~~~~~~~~p-~~f-~~~e-~~~t~ir~~~~~~e 142 (172)
T COG1056 82 YNDIWV-AYVEDLV-P----PFDVV-----YT----WN-PWVARLFHEKGEKVYYP-PMF-PRWE-YSGTAIRRKMLGGE 142 (172)
T ss_pred CCHHHH-HHHHHCC-C----CCCCC-----CC----CC-HHHHHHHHHCCCEEECC-CCC-CCCC-CCCCHHHHHHHCCC
T ss_conf 111558-8886128-8----75536-----77----87-79999876617606358-851-3643-35616777763676
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCC
Q ss_conf 99999850000000001221002011
Q gi|254780846|r 179 VLNAAHLLGYRFTIESDVIHGEKIGR 204 (324)
Q Consensus 179 i~~an~lLGr~y~i~G~Vv~G~~~Gr 204 (324)
.. ...+.-.+-.....=+.|..+.+
T Consensus 143 ~~-w~~~~~~~v~~~i~eI~g~~r~~ 167 (172)
T COG1056 143 DV-WEDLVPTFVAESITEIRGVPRLR 167 (172)
T ss_pred CC-HHHCCCCHHHHHHHHCCCCHHHH
T ss_conf 33-13336705767777558746778
No 67
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=96.58 E-value=0.011 Score=38.33 Aligned_cols=136 Identities=21% Similarity=0.288 Sum_probs=69.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHH-HHCCC---CCCCCCCC
Q ss_conf 499993156502899999999999502797799983798689847888662000078999988-51131---00022564
Q gi|254780846|r 20 GVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKIL-EKMGF---SALIRYKF 95 (324)
Q Consensus 20 ~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l-~~~Gi---d~vi~~~F 95 (324)
..|-||-|--+|+||..+++.+.+.++..-.+ +---..+. . ...-.+..||..++ +.+.. ..+.++|-
T Consensus 6 ~~v~iGRFQPfH~GHl~~i~~al~~~~~vii~-iGSa~~~~-----~--~~NPft~~ER~~Mi~~~l~~~~~~rv~~~pi 77 (188)
T PRK13793 6 YLVFIGRFQPFHLAHMQTIEIALQQSRYVILA-LGSAQMER-----N--IKNPFLAIEREQMILSNFSLDEQKRIRFVHV 77 (188)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCEEEEE-EECCCCCC-----C--CCCCCCHHHHHHHHHHHCCHHHCCEEEEECC
T ss_conf 69998778986478999999999718938999-70789898-----8--8999898999999998558755373899706
Q ss_pred HHHHHHCCCHHHHHHH--HCC---CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHH
Q ss_conf 0577522830268886--214---27802999834553033775560246775101264167615223023330230368
Q gi|254780846|r 96 TLETANYSAEQFIQKV--LVE---WLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNI 170 (324)
Q Consensus 96 ~~~~a~ls~e~Fi~~i--L~~---~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~I 170 (324)
. ++ -+-...+..+ ++. ....+...||..+ ..+.-.|+.+-. ...+.++.++ ..+|+|-|
T Consensus 78 ~-D~--yn~~~Wv~~Vq~~v~~~~~~~~~i~LVGh~K------DesSyyLr~FP~---W~~v~~~~~~----~~~SaT~I 141 (188)
T PRK13793 78 V-DV--YNDEKWVKQVKSLVNGVIEPNSKVGLIGHFK------DESSYYLRLFPE---WVMVELDSLK----DSISATPM 141 (188)
T ss_pred C-CC--CCHHHHHHHHHHHCCCCCCCCCCCCEEEEEC------CCCCCEEECCCC---CCCCCCCCCC----CCCCCHHH
T ss_conf 7-65--6348999999996634356788730677620------666513224887---6533464445----77574599
Q ss_pred HHHHHHHHH
Q ss_conf 999872589
Q gi|254780846|r 171 RTALTKGHV 179 (324)
Q Consensus 171 R~~l~~Gdi 179 (324)
|+++-.|..
T Consensus 142 R~~~~~g~~ 150 (188)
T PRK13793 142 REAYYQGKI 150 (188)
T ss_pred HHHHHCCCC
T ss_conf 999976984
No 68
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=96.57 E-value=0.046 Score=34.23 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=90.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHH----HHHHC-CCCCCC--
Q ss_conf 84999931565028999999999995027977999837986898478886620000789999----88511-310002--
Q gi|254780846|r 19 GGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK----ILEKM-GFSALI-- 91 (324)
Q Consensus 19 ~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~----~l~~~-Gid~vi-- 91 (324)
.+||+.=.=--+|+||..|.+.+.+.+.+ ..+ ||. ..+.++... +.+-|.+ +++.+ .-+.++
T Consensus 186 ~~VvaFQTRNP~HraHE~l~k~Ale~~dg---Lli----~Pl--vG~~K~gD~--~~~~r~~~y~~l~~~y~p~~~~~l~ 254 (390)
T PRK04149 186 KTVVAFQTRNPPHRAHEYLQKCALEIVDG---LLL----NPL--VGETKSGDI--PAEVRMEAYEALLKGYYPKDRVILS 254 (390)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCC---EEE----ECC--CCCCCCCCC--CHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 72367762688866899999999985398---899----666--268888888--9899999999999735898737997
Q ss_pred CCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC---CHHH-HHHH-HHCCCCEEEECCHHHC-------
Q ss_conf 25640577522830268886214278029998345530337755---6024-6775-1012641676152230-------
Q gi|254780846|r 92 RYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAG---DRGI-LQKR-GEKYGFHTVFIDELRN------- 159 (324)
Q Consensus 92 ~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~G---d~~~-L~~~-~~~~g~~v~~i~~~~~------- 159 (324)
.+|....+|.= -|.-...++-+.+++.+.+||-|+. |-+.== +.+. +.++ .++.|++.+..+.+..
T Consensus 255 ~~p~~mryAGP-REAl~HAiiRkN~GcThfIVGRDHA-Gvg~fY~~y~Aq~if~~~~~~elgI~~v~f~~~~Yc~~~~~~ 332 (390)
T PRK04149 255 VTPAAMRYAGP-REAIFHALVRKNYGCTHFIVGRDHA-GVGDYYGPYDAQEIFDEFTPEELGITPLKFEEAFYCPKCGGM 332 (390)
T ss_pred ECCCCCCCCCH-HHHHHHHHHHHHCCCCEEEECCCCC-CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCE
T ss_conf 33664244797-9999999999875996699766667-732356917889999865865573389865713898567837
Q ss_pred ----------CCCCCCCHHHHHHHHHHHHH-------HHHHHHHHHCCHHH
Q ss_conf ----------23330230368999872589-------99998500000000
Q gi|254780846|r 160 ----------NKSQIVSSSNIRTALTKGHV-------LNAAHLLGYRFTIE 193 (324)
Q Consensus 160 ----------~~~~~ISSt~IR~~l~~Gdi-------~~an~lLGr~y~i~ 193 (324)
..-..||.|.||++|.+|.. .++.+.|-+.|.-.
T Consensus 333 ~~~~~cph~~~~~~~iSGT~iR~~l~~G~~~P~~f~rpEV~~iL~~~y~~~ 383 (390)
T PRK04149 333 ASTKTCPHGKEDRVRLSGTKVREMLREGERPPPEFSRPEVAEVLIKGLKKY 383 (390)
T ss_pred ECCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 503548998784686379999999977898995447289999999999971
No 69
>TIGR00482 TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase; InterPro: IPR005248 This family contains the predominant bacterial/eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. Nicotinamide-nucleotide adenylyltransferase (2.7.7.1 from EC) synthesizes NAD by the salvage pathway, while nicotinate-nucleotide adenylyltransferase (2.7.7.18 from EC) synthesizes the immediate precursor of NAD by the de novo pathway. ; GO: 0016779 nucleotidyltransferase activity, 0009435 NAD biosynthetic process.
Probab=95.84 E-value=0.019 Score=36.77 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=53.8
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCC-CCCHHHHHHHHHHHC--C--CCCCCCCCCHHH
Q ss_conf 93156502899999999999502797799983798689847888662-000078999988511--3--100022564057
Q gi|254780846|r 24 IGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIF-TLSPPSIQEKILEKM--G--FSALIRYKFTLE 98 (324)
Q Consensus 24 iG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~-~l~~~~~k~~~l~~~--G--id~vi~~~F~~~ 98 (324)
=|+||=+|.||..|.+.+.+...-..+ .|-|.+.-.+++..... -+.+.++|+++++.. + -+.+-+-+++.+
T Consensus 3 GGsFdP~H~GHl~~a~~~~~~~~~~~~---~~vP~~~pP~K~~~~~~~~lA~~~~R~~Ml~lA~~~~T~~~~~v~~~E~~ 79 (229)
T TIGR00482 3 GGSFDPIHYGHLLLAEEALEALDLDKV---IFVPTFNPPHKKTEELASDLASSEHRLAMLKLAIENETNPKFEVSDFEIK 79 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEE---EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHH
T ss_conf 887787779999999999987089779---99507777767787777443328999999999997347885144066887
Q ss_pred HHHCCCHHH-HHHHHCCCCC-------EE---EEEECCCC
Q ss_conf 752283026-8886214278-------02---99983455
Q gi|254780846|r 99 TANYSAEQF-IQKVLVEWLE-------VK---TVITGTKF 127 (324)
Q Consensus 99 ~a~ls~e~F-i~~iL~~~l~-------~k---~ivVG~Df 127 (324)
-.+.+.--. ++. +.++++ .+ .+++|.|-
T Consensus 80 ~~~~~YT~~Tl~~-~~~~~~~GA~~~~~~~kl~fiiG~D~ 118 (229)
T TIGR00482 80 RGGPSYTIDTLKH-LKKKYPGGAVTPDSEVKLYFIIGADA 118 (229)
T ss_pred CCCCCCCHHHHHH-HHHHCCCCCCCCCCCCCEEEEECCCH
T ss_conf 0797531899999-99984898637788962799846211
No 70
>KOG2803 consensus
Probab=95.32 E-value=0.23 Score=29.71 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=71.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCHHHH
Q ss_conf 999931565028999999999995027977999837986898478886620000789999885113-1000225640577
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMG-FSALIRYKFTLET 99 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~G-id~vi~~~F~~~~ 99 (324)
|-+=|-||-+|-||-..|.+|++..+.+-.+|-| .+=+..++-++ .++.+||-++.+... +|.++.-
T Consensus 11 Vw~DGCfDm~HyGHanaLrQAkalGdkLivGVHs-----DeeI~~nKGpP-V~t~eERy~~v~~ikWVDEVV~~------ 78 (358)
T KOG2803 11 VWADGCFDMVHYGHANALRQAKALGDKLIVGVHS-----DEEITLNKGPP-VFTDEERYEMVKAIKWVDEVVEG------ 78 (358)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCEEEEEECC-----HHHHHHCCCCC-CCCHHHHHHHHHHCCHHHHHHCC------
T ss_conf 8852511232121258778999848848999526-----69887258998-66689999998602016665258------
Q ss_pred HHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 5228302688862142780299983455303377556024677510
Q gi|254780846|r 100 ANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGE 145 (324)
Q Consensus 100 a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~ 145 (324)
-|--+-.+.+ +++++..+|=|.|-..-.++.-.+.+.|+.+.
T Consensus 79 ---APyvtt~~~m-d~y~cd~vvHGdDit~~a~G~D~Y~~vK~agr 120 (358)
T KOG2803 79 ---APYVTTLEWM-DKYGCDYVVHGDDITLDADGLDCYRLVKAAGR 120 (358)
T ss_pred ---CCEECCHHHH-HHHCCEEEEECCCCEECCCCCCHHHHHHHHCC
T ss_conf ---9714149899-87297289857850346887527899987241
No 71
>KOG2803 consensus
Probab=95.25 E-value=0.067 Score=33.17 Aligned_cols=139 Identities=18% Similarity=0.169 Sum_probs=78.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHH-HHHHCCCCCCCC-CC
Q ss_conf 1884999931565028999999999995027977999837986898478886620000789999-885113100022-56
Q gi|254780846|r 17 LKGGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK-ILEKMGFSALIR-YK 94 (324)
Q Consensus 17 ~~~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~-~l~~~Gid~vi~-~~ 94 (324)
....|-.=|.||-+|.||...|++++..+..+ .+=+..|+--.++-. ....++++.||.- +|+---+|.+++ .|
T Consensus 197 ~~kvVYvdGaFDLFH~GHl~~Le~ak~lgdyL-IvGI~~D~~vneykg---s~~PiMnl~ER~LsvlackyVdeVvvGaP 272 (358)
T KOG2803 197 TDKVVYVDGAFDLFHAGHLDFLEKAKRLGDYL-IVGIHTDQTVNEYKG---SNYPIMNLHERVLSVLACKYVDEVVVGAP 272 (358)
T ss_pred CCCEEEECCCHHHHCCCHHHHHHHHHHCCCCE-EEEEECCCCHHHHCC---CCCCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 87289974760021232499999987616836-998604742233315---77741008998888764300236897580
Q ss_pred CHHHHHHCCCHHHHHHHHCCCCCEEEEEECC--CCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHH
Q ss_conf 4057752283026888621427802999834--55303377556024677510126416761522302333023036899
Q gi|254780846|r 95 FTLETANYSAEQFIQKVLVEWLEVKTVITGT--KFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRT 172 (324)
Q Consensus 95 F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~--Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~ 172 (324)
+. .+ .+|+ +.+++..++.|. ||+=..+ -++.. +...+......+.. .++.+|-+
T Consensus 273 ~~-----v~-s~~i-----~~~~~~~v~~g~~~~~~~~~~---py~~~---------k~~~i~~~~~~~~d-ltte~Iv~ 328 (358)
T KOG2803 273 YE-----VT-SEFI-----KLFNIDKVAHGTIPDFRDPSD---PYADP---------KRRGIFEEADSGSD-LTTELIVE 328 (358)
T ss_pred HH-----CC-HHHH-----HHCCCEEEEEECCCCCCCCCC---CCCCC---------HHHCCHHHCCCCCC-CCHHHHHH
T ss_conf 23-----05-7899-----861831798731253347667---33341---------23130121278544-45899999
Q ss_pred HHHHHHHHHHH
Q ss_conf 98725899999
Q gi|254780846|r 173 ALTKGHVLNAA 183 (324)
Q Consensus 173 ~l~~Gdi~~an 183 (324)
-|..-..+..+
T Consensus 329 RIis~r~~Ye~ 339 (358)
T KOG2803 329 RIISNRQAYEA 339 (358)
T ss_pred HHHHHHHHHHH
T ss_conf 99987888887
No 72
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.42 E-value=0.49 Score=27.57 Aligned_cols=148 Identities=18% Similarity=0.251 Sum_probs=84.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHH----HHHHHCCCCC--CCC
Q ss_conf 8499993156502899999999999502797799983798689847888662000078999----9885113100--022
Q gi|254780846|r 19 GGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQE----KILEKMGFSA--LIR 92 (324)
Q Consensus 19 ~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~----~~l~~~Gid~--vi~ 92 (324)
..||+.=.=--+|++|..|++++.+..+. +++- ||. ....++.. + +..-|. .+++.+.-+. +-.
T Consensus 187 ~~VvAFQTRNPlHraH~~l~~~A~~~~~a---~lLi---hPl--vG~tk~gD-i-~~~~rvr~y~a~~~~yp~~~~~l~~ 256 (568)
T PRK05537 187 RRVVAFQTRNPLHRAHEELTKRAAREVQA---NLLI---HPV--VGMTKPGD-I-DHFTRVRCYEALLDYYPPATTLLSL 256 (568)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCC---EEEE---ECC--CCCCCCCC-C-CHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 64688724889977889999999996598---3998---367--68888887-7-7589999999999557987268703
Q ss_pred CCCHHHHHHCCCHH-HHHHHHCCCCCEEEEEECCCCCC-CCCCCCC--------HHHHHHHHHCCCCEEEECCHHHCC--
Q ss_conf 56405775228302-68886214278029998345530-3377556--------024677510126416761522302--
Q gi|254780846|r 93 YKFTLETANYSAEQ-FIQKVLVEWLEVKTVITGTKFRF-GKDRAGD--------RGILQKRGEKYGFHTVFIDELRNN-- 160 (324)
Q Consensus 93 ~~F~~~~a~ls~e~-Fi~~iL~~~l~~k~ivVG~Df~F-G~~r~Gd--------~~~L~~~~~~~g~~v~~i~~~~~~-- 160 (324)
+|.....+ .|.+ -...+.-+.+++.+++||-|+.= |.+..|. -+.++++..+.|++++.-..+...
T Consensus 257 lP~~Mr~A--GPREAl~HAiiRkNyGcTHfIVGRDHAGpg~~~~g~~fygpy~Aq~l~~~~~~Elgi~~V~~~~~~Y~~~ 334 (568)
T PRK05537 257 LPLAMRMA--GPREALWHGIIRRNYGCTHFIVGRDHAGPGKDSRGKPFYGPYDAQELFAKYQDEIGITMVPFKEMVYVQE 334 (568)
T ss_pred CCCCCCCC--CCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEECCCCCEEEECC
T ss_conf 67654546--8189999999886169863343367788888988876888667799999748860980224532467546
Q ss_pred --------------CCCCCCHHHHHHHHHHHH
Q ss_conf --------------333023036899987258
Q gi|254780846|r 161 --------------KSQIVSSSNIRTALTKGH 178 (324)
Q Consensus 161 --------------~~~~ISSt~IR~~l~~Gd 178 (324)
.-..+|.|-+|+.|+.|.
T Consensus 335 ~~~y~p~~~~~~~~~~~~isgtelr~~L~~G~ 366 (568)
T PRK05537 335 KAQYVPVNEVPQGATVLDISGTELRRRLREGL 366 (568)
T ss_pred CCEEEECHHCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 68376601048976305787789999986799
No 73
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006418 This family of archaeal proteins exhibits NAD salvage biosynthesis enzyme nicotinamide-nucleotide adenylyltransferase (2.7.7.1 from EC) activity. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase (2.7.7.18 from EC), an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterised with respect to activity, are also present.; GO: 0000309 nicotinamide-nucleotide adenylyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=93.74 E-value=0.097 Score=32.13 Aligned_cols=134 Identities=13% Similarity=0.219 Sum_probs=70.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE-ECCCHHHHHCC---CCCCCCCCHHHHHHHHHHHCCCC-CCCCCCCHH
Q ss_conf 99315650289999999999950279779998-37986898478---88662000078999988511310-002256405
Q gi|254780846|r 23 AIGNFDGIHLGHHLILEQAIKIANNSPITVLS-FNPHPRTIIQS---SSPIFTLSPPSIQEKILEKMGFS-ALIRYKFTL 97 (324)
Q Consensus 23 tiG~FDGvH~GHq~Li~~~~~~a~~~~~~viT-F~p~P~~~~~~---~~~~~~l~~~~~k~~~l~~~Gid-~vi~~~F~~ 97 (324)
=+|=|--+|+||+.+|++..+.=+.+-.++=+ =+-|.. -+| ......|+.-=.+ .-+++++| .++.+|...
T Consensus 4 y~GRFQPFH~GH~~Vik~~l~~VDELiiGiGSAq~SHt~--~NPFTAGERv~MI~~sl~~--~~rel~~d~~~Y~iP~~D 79 (171)
T TIGR01527 4 YIGRFQPFHLGHLEVIKKILEEVDELIIGIGSAQESHTL--ENPFTAGERVLMITKSLKE--VKRELMDDLKVYIIPIED 79 (171)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCC--CCCCCCCHHHHHHHHHHHH--HHHHHHHHCCEECCCHHH
T ss_conf 467768755213799998873547779874048862022--2897613078999999998--655442213221114244
Q ss_pred HHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 77522830268886214278029998345530337755602467751012641676152230233302303689998725
Q gi|254780846|r 98 ETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177 (324)
Q Consensus 98 ~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~G 177 (324)
=..+==.-.+++. +..++. || | ++|. +...+-++.|++|.. |++. + -+..+||.||..+..|
T Consensus 80 i~~N~iWv~yV~s-~~PkFe----vv-----Y----~~NP-LV~rLF~EaGy~V~~-p~mf-n-R~~y~gteIRR~m~~g 141 (171)
T TIGR01527 80 IERNSIWVSYVES-MTPKFE----VV-----Y----SNNP-LVVRLFKEAGYKVKR-PPMF-N-REEYEGTEIRRRMLEG 141 (171)
T ss_pred HHHHHHHHHEECC-CCCCCE----EE-----E----CCCC-EEEEEECCCCEEECC-CCCC-C-CCCCCCHHHHHHHHCC
T ss_conf 5340100000004-889840----68-----7----3878-478754015315438-8875-7-6654525666665528
Q ss_pred H
Q ss_conf 8
Q gi|254780846|r 178 H 178 (324)
Q Consensus 178 d 178 (324)
+
T Consensus 142 e 142 (171)
T TIGR01527 142 E 142 (171)
T ss_pred C
T ss_conf 8
No 74
>KOG2804 consensus
Probab=92.37 E-value=0.88 Score=25.92 Aligned_cols=147 Identities=19% Similarity=0.216 Sum_probs=84.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE-EEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC-CCCCCCC-CCCHH
Q ss_conf 99993156502899999999999502797799-983798689847888662000078999988511-3100022-56405
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITV-LSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM-GFSALIR-YKFTL 97 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~v-iTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~-Gid~vi~-~~F~~ 97 (324)
|-|=|.||-+|.||..-|.+|++.=-+.-+.| +.=|. +.-.-+..+.++..||-+-|... -+|.|+. -|+
T Consensus 66 VYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De-----~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~APW-- 138 (348)
T KOG2804 66 VYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDE-----LTHKFKGRTVMNENERYEALRHCRYVDEVIPNAPW-- 138 (348)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCH-----HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC--
T ss_conf 97130487764667999999987388737998613733-----23310673004757777776520236564369983--
Q ss_pred HHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 77522830268886214278029998345530337755602467751012641676152230233302303689998725
Q gi|254780846|r 98 ETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177 (324)
Q Consensus 98 ~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~G 177 (324)
.++ .+|+++..++ .|.-.|--+... +.+++-+.-++.|.- ++.-+. +-||+|-|-.-|-.-
T Consensus 139 ---~lt-~EFL~~HKID------fVAHDdIPY~s~---gsdDiY~~vK~~G~F---~~T~RT---eGvSTSDiI~rIVrD 199 (348)
T KOG2804 139 ---TLT-PEFLEKHKID------FVAHDDIPYVSA---GSDDIYKPVKEAGMF---LPTQRT---EGVSTSDIITRIVRD 199 (348)
T ss_pred ---CCC-HHHHHHCCCC------EEECCCCCCCCC---CCHHHHHHHHHHCCC---CCCCCC---CCCCHHHHHHHHHHH
T ss_conf ---614-9999762565------021266655678---803688999973461---321024---774477889999975
Q ss_pred HHHHHHHHHHHCCHHH
Q ss_conf 8999998500000000
Q gi|254780846|r 178 HVLNAAHLLGYRFTIE 193 (324)
Q Consensus 178 di~~an~lLGr~y~i~ 193 (324)
-=..|.+-|.|-|+-.
T Consensus 200 YD~YvrRNL~RGys~k 215 (348)
T KOG2804 200 YDVYVRRNLARGYSAK 215 (348)
T ss_pred HHHHHHHCCCCCCCHH
T ss_conf 8999986102367877
No 75
>KOG3199 consensus
Probab=76.95 E-value=6.6 Score=20.22 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=29.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEE--EECCCHHHHH
Q ss_conf 4999931565028999999999995027-977999--8379868984
Q gi|254780846|r 20 GVVAIGNFDGIHLGHHLILEQAIKIANN-SPITVL--SFNPHPRTII 63 (324)
Q Consensus 20 ~vvtiG~FDGvH~GHq~Li~~~~~~a~~-~~~~vi--TF~p~P~~~~ 63 (324)
..+|.|.|.+.--+|..+++-|+..-++ ...-|+ -+.|--..+-
T Consensus 10 ~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYk 56 (234)
T KOG3199 10 VLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYK 56 (234)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHH
T ss_conf 99985266852478999999999997046875998667645303433
No 76
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773 Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process.
Probab=74.44 E-value=6.3 Score=20.33 Aligned_cols=115 Identities=16% Similarity=0.207 Sum_probs=63.6
Q ss_pred HHHHHHHHHCCCC--EEEEEECCCHHHHHCCCCCCC-CCCHHHHHHHHHHHCC--CCCCCCCCCHHHHHH-CCCHHHHHH
Q ss_conf 9999999502797--799983798689847888662-0000789999885113--100022564057752-283026888
Q gi|254780846|r 37 ILEQAIKIANNSP--ITVLSFNPHPRTIIQSSSPIF-TLSPPSIQEKILEKMG--FSALIRYKFTLETAN-YSAEQFIQK 110 (324)
Q Consensus 37 Li~~~~~~a~~~~--~~viTF~p~P~~~~~~~~~~~-~l~~~~~k~~~l~~~G--id~vi~~~F~~~~a~-ls~e~Fi~~ 110 (324)
.++.|+++|++.+ .-|++|.+ . |+--.--. -+|-...+. +..| ..+++.+|||.-+-. .+.-.++++
T Consensus 111 aVEsAlKLARKvtGR~nvvaFTN---a-FHGmt~GsLsvTGN~~~R---~~aG~~~~~v~~mPYDgY~~~~~D~~~Yfe~ 183 (413)
T TIGR02407 111 AVESALKLARKVTGRSNVVAFTN---A-FHGMTLGSLSVTGNRFKR---QGAGVPLSNVSRMPYDGYLGGEVDTIAYFEK 183 (413)
T ss_pred HHHHHHHHHHCCCCCCCEEEECC---C-CHHHHHHHHHHHHHHHHH---HCCCCCCCCCEECCCCCCCCCCCCHHHHHHH
T ss_conf 79999999850389840688517---7-302348988864334443---0267447782568765577864322899998
Q ss_pred HHCCC----CCEEEEEECCCCCCCCCCCCCH-----H---HHHHHHHCCCCEEEECCHHHCCCCCC
Q ss_conf 62142----7802999834553033775560-----2---46775101264167615223023330
Q gi|254780846|r 111 VLVEW----LEVKTVITGTKFRFGKDRAGDR-----G---ILQKRGEKYGFHTVFIDELRNNKSQI 164 (324)
Q Consensus 111 iL~~~----l~~k~ivVG~Df~FG~~r~Gd~-----~---~L~~~~~~~g~~v~~i~~~~~~~~~~ 164 (324)
+|-+. -.|-.|++=. =+++|.+ + -|+++|+++++-++ ||+++..-|+.
T Consensus 184 ~L~D~sSGvd~PAAvILET-----VQGEGGiNvAs~eWLq~l~~lCr~~DILLI-VDDIQaGCGRT 243 (413)
T TIGR02407 184 LLEDSSSGVDLPAAVILET-----VQGEGGINVASKEWLQRLEKLCRRHDILLI-VDDIQAGCGRT 243 (413)
T ss_pred HHCCCCCCCCCCCEEEEEC-----CCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EEEEECCCCCC
T ss_conf 6178889847672589811-----037577031235579999999986498687-73174188887
No 77
>PRK01506 consensus
Probab=68.32 E-value=10 Score=18.92 Aligned_cols=140 Identities=14% Similarity=0.178 Sum_probs=69.4
Q ss_pred CCCCCCCCCCCC-EEEEEECCCC-CCHHHHHHHH--HHHHHH-CCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 521127610188-4999931565-0289999999--999950-2797799983798689847888662000078999988
Q gi|254780846|r 8 EINQSLPNHLKG-GVVAIGNFDG-IHLGHHLILE--QAIKIA-NNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKIL 82 (324)
Q Consensus 8 ~~~~~~p~~~~~-~vvtiG~FDG-vH~GHq~Li~--~~~~~a-~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l 82 (324)
|..-.++.+.++ -|+.+-++.+ ++-.=.+|+- .+.+.+ .+.-.+|+-+-|.-+.=- ..++...++ ...=.++|
T Consensus 45 E~~vri~~~vrg~dV~ivqs~~~p~nd~lmELll~i~a~r~~gA~~It~ViPY~~YaRQDr-~~~~ge~is-ak~vA~ll 122 (317)
T PRK01506 45 EVQINIEESIRGCDVFIIQSTSAPVNEHIMELLIMIDALKRASAKTINIVIPYYGYARQDR-KARSREPIT-AKLVANLL 122 (317)
T ss_pred CEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CCCCCCCEE-HHHHHHHH
T ss_conf 8899877877898289985899992089999999999988738974899626765243764-335887613-89888787
Q ss_pred HHCCCCCCCCCCCH---------HHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 51131000225640---------577522830268886214278029998345530337755602467751012641676
Q gi|254780846|r 83 EKMGFSALIRYKFT---------LETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVF 153 (324)
Q Consensus 83 ~~~Gid~vi~~~F~---------~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~ 153 (324)
+..|+|.++.++-- .-+.++++...+.+++.++---..+||+.|. |....-+.+++..|..+.+
T Consensus 123 ~~~G~d~vitvDlH~~~i~~fF~ip~~~l~~~~~l~~~~~~~~~~~~vVVsPD~-------Ga~kra~~~a~~L~~~~~~ 195 (317)
T PRK01506 123 ETAGATRVITLDLHAPQIQGFFDIPIDHLMGVPILSDYFETKGLKDIVIVSPDH-------GGVTRARKMADRLKAPIAI 195 (317)
T ss_pred HCCCCCEEEEECCCCHHHHHCCCCCCCEEEECHHHHHHHHHCCCCCCEEEECCC-------HHHHHHHHHHHHCCCCEEE
T ss_conf 415885379962784877501699843158508888899854887748990492-------4899999999972996688
Q ss_pred CCH
Q ss_conf 152
Q gi|254780846|r 154 IDE 156 (324)
Q Consensus 154 i~~ 156 (324)
+..
T Consensus 196 ~~K 198 (317)
T PRK01506 196 IDK 198 (317)
T ss_pred EEE
T ss_conf 986
No 78
>PRK01999 consensus
Probab=64.52 E-value=12 Score=18.44 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=73.8
Q ss_pred ECCCCCCCCCCCCCCCE-EEEEECCCCCCHHHHHHH--HHHHHHH-CCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 24885211276101884-999931565028999999--9999950-2797799983798689847888662000078999
Q gi|254780846|r 4 FHNIEINQSLPNHLKGG-VVAIGNFDGIHLGHHLIL--EQAIKIA-NNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQE 79 (324)
Q Consensus 4 ~~~~~~~~~~p~~~~~~-vvtiG~FDGvH~GHq~Li--~~~~~~a-~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~ 79 (324)
|.+=|..-.++++.++. |+-+-..+..--.=.+|+ -.+.+.+ .+.-.+|+-+-|.-+.= +...+...++ -..-.
T Consensus 37 F~DGE~~v~i~~~vrg~dV~ivqs~~p~~d~lmELll~~dA~r~~~A~~It~ViPY~~YaRQD-r~~~~~e~is-ak~va 114 (311)
T PRK01999 37 FADGEFAVSYEESIRGADVFLVQSTFPNSDNLMELLLMIDAAKRASARSITAVIPYFGWARQD-RKDKPRVSIG-AKLVA 114 (311)
T ss_pred CCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC-CCCCCCCCEE-HHHHH
T ss_conf 899988986178767983899889999816899999999889865886389962554433376-6568998676-77744
Q ss_pred HHHHHCCCCCCCCCCC---------HHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCE
Q ss_conf 9885113100022564---------0577522830268886214278029998345530337755602467751012641
Q gi|254780846|r 80 KILEKMGFSALIRYKF---------TLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFH 150 (324)
Q Consensus 80 ~~l~~~Gid~vi~~~F---------~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~ 150 (324)
.+|+..|+|.++.++- +....++++...+.+++.+.-.-..++|+.|. |....-+.+++..|..
T Consensus 115 ~lL~~~G~d~vitvDlH~~~i~gfF~ipv~~l~a~~~~~~~~~~~~~~~~vvVsPD~-------g~~kra~~~A~~Lg~~ 187 (311)
T PRK01999 115 DLLSVAGIDRLITMDLHADQIQGFFDKPVDHLYASTVFLPYIRSLKLDNLVIATPDV-------GGSKRASAYSKYLGVP 187 (311)
T ss_pred HHHHCCCCCEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCH-------HHHHHHHHHHHHHCCC
T ss_conf 343015786589982683888744799876443758899999963987608981590-------4999999999861787
Q ss_pred EEECCHHHC
Q ss_conf 676152230
Q gi|254780846|r 151 TVFIDELRN 159 (324)
Q Consensus 151 v~~i~~~~~ 159 (324)
..++...+.
T Consensus 188 ~~~~~K~R~ 196 (311)
T PRK01999 188 VVICYKSRE 196 (311)
T ss_pred EEEEECCCC
T ss_conf 233110246
No 79
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=63.08 E-value=3.4 Score=22.12 Aligned_cols=105 Identities=11% Similarity=0.058 Sum_probs=47.1
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHCCC--CCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 68984788866200007899998851131--0002256405775228302688862142780299983455303377556
Q gi|254780846|r 59 PRTIIQSSSPIFTLSPPSIQEKILEKMGF--SALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGD 136 (324)
Q Consensus 59 P~~~~~~~~~~~~l~~~~~k~~~l~~~Gi--d~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd 136 (324)
+.+.-++.. -..+.|++ .+-+++|. +..+++--| .|.++.-..--++++.. +.-+|+.-. |.+-...
T Consensus 49 ~~Ei~r~g~-SYTidTL~---~lr~~~~p~~~l~~IiG~D-~~~~l~~W~~~~~il~~---~~liV~~Rp---g~~~~~~ 117 (196)
T PRK06973 49 TDEIEHAGP-TYTVDTLA---RWRERIGPDASLALLIGAD-QLVRLDTWRDWRRLFDY---AHLCAATRP---GFDLGAA 117 (196)
T ss_pred HHHHHCCCC-CCHHHHHH---HHHHHHCCCCCEEEEECHH-HHHHHHHHCCHHHHHHH---CEEEEEECC---CCCCCCC
T ss_conf 899868999-77999999---9999859998589996278-87444403669999974---808998189---9774446
Q ss_pred HHHHHHHHHCCC-----------CEEEECCHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 024677510126-----------416761522302333023036899987258
Q gi|254780846|r 137 RGILQKRGEKYG-----------FHTVFIDELRNNKSQIVSSSNIRTALTKGH 178 (324)
Q Consensus 137 ~~~L~~~~~~~g-----------~~v~~i~~~~~~~~~~ISSt~IR~~l~~Gd 178 (324)
...+.+...... -.+...+.. .-.||||.||+.|++|.
T Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~g~i~~~~~~----~~dISST~IR~~l~~g~ 166 (196)
T PRK06973 118 SPAVAAEIAARQADADVLQATPAGRLLIDTTL----AFDLSATDIRAHLRACI 166 (196)
T ss_pred CHHHHHHHHHHHCCHHHHHCCCCCCEEECCCC----CCCCCHHHHHHHHHCCC
T ss_conf 88899999984125676623888717975887----77507899999998599
No 80
>TIGR00863 P2X cation transporter protein; InterPro: IPR001429 P2X purinoceptors are cell membrane ion channels, gated by adenosine 5'-triphosphate (ATP) and other nucleotides; they have been found to be widely expressed on mammalian cells, and, by means of their functional properties, can be differentiated into three sub-groups. The first group is almost equally well activated by ATP and its analogue alphabetamethyleneATP, whereas, the second group is not activated by the latter compound. A third type of receptor (also called P2Z) is distinguished by the fact that repeated or prolonged agonist application leads to the opening of much larger pores, allowing large molecules to traverse the cell membrane. This increased permeability rapidly leads to cell death, and lysis. Molecular cloning studies have identified seven P2X receptor subtypes, designated P2X1-P2X7. These receptors are proteins that share 35-48% amino acid identity, and possess two putative transmembrane (TM) domains, separated by a long (~270 residues) intervening sequence, which is thought to form an extracellular loop. Around 1/4 of the residues within the loop are invariant between the cloned subtypes, including 10 characteristic cysteines. Studies of the functional properties of heterologously expressed P2X receptors, together with the examination of their distribution in native tissues, suggests they likely occur as both homo- and heteromultimers in vivo , . This entry represents all P2X purinoreceptor subtypes.; GO: 0004872 receptor activity, 0005216 ion channel activity, 0005524 ATP binding, 0006811 ion transport, 0016020 membrane.
Probab=58.26 E-value=2.4 Score=23.03 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=47.7
Q ss_pred CCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCC-CCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 3100022564057752283026888621427802999834553033-775560246775101264167615
Q gi|254780846|r 86 GFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGK-DRAGDRGILQKRGEKYGFHTVFID 155 (324)
Q Consensus 86 Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~-~r~Gd~~~L~~~~~~~g~~v~~i~ 155 (324)
||.-=-..+-|..-+...|.==.+. |-++-.-+.+.=|+||||.+ =|.-+-.+-|.+-|.|||...++-
T Consensus 259 GI~I~W~CDLD~~~s~C~P~YsF~r-Ld~~~~~~~~S~GYNFRFA~Yy~~~~G~e~RtL~KaYGIRFDvlV 328 (377)
T TIGR00863 259 GITINWDCDLDKAASECNPKYSFRR-LDNKDKEKSVSPGYNFRFAKYYRDNAGVETRTLLKAYGIRFDVLV 328 (377)
T ss_pred EEEEEEEECCCCHHHCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCEEEEEEE
T ss_conf 8997201276841205875033100-457665578888646433202352789741245554040676885
No 81
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=57.93 E-value=16 Score=17.70 Aligned_cols=139 Identities=13% Similarity=0.160 Sum_probs=72.3
Q ss_pred CCCCCCCCCCCCE-EEEEECCCC-CCHHHHHHHHH--HHHHH-CCCCEEEEEECCCHHHHHCCCCC---CCCCCHHHHHH
Q ss_conf 5211276101884-999931565-02899999999--99950-27977999837986898478886---62000078999
Q gi|254780846|r 8 EINQSLPNHLKGG-VVAIGNFDG-IHLGHHLILEQ--AIKIA-NNSPITVLSFNPHPRTIIQSSSP---IFTLSPPSIQE 79 (324)
Q Consensus 8 ~~~~~~p~~~~~~-vvtiG~FDG-vH~GHq~Li~~--~~~~a-~~~~~~viTF~p~P~~~~~~~~~---~~~l~~~~~k~ 79 (324)
|..-.++++.++. |+-+.+... ++---.+|+-- +.+.+ .+.-.+|+-+-|.-+ +++. ...+ +...=.
T Consensus 36 E~~v~i~~~vrg~dV~ivqs~~~p~nd~lmElll~i~A~r~a~A~~It~ViPY~~Y~R----QDr~~~~re~i-sak~va 110 (309)
T PRK01259 36 EISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALRRASAGRITAVIPYFGYAR----QDRKASARVPI-TAKLVA 110 (309)
T ss_pred CEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC----CCCCCCCCCCE-EHHHHH
T ss_conf 8898637887798289986799995177999999999998748871799724665036----87777999867-599999
Q ss_pred HHHHHCCCCCCCCCCCH---------HHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCE
Q ss_conf 98851131000225640---------577522830268886214278029998345530337755602467751012641
Q gi|254780846|r 80 KILEKMGFSALIRYKFT---------LETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFH 150 (324)
Q Consensus 80 ~~l~~~Gid~vi~~~F~---------~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~ 150 (324)
++|+.+|+|.++.++.- ..+-++++...+.+++.++-.-..++|+.|. |....-+.+++..|..
T Consensus 111 ~ll~~~G~d~vit~DlH~~qi~gfF~ipvd~l~a~~~l~~~i~~~~~~~~vvVsPD~-------G~~~ra~~~A~~lg~~ 183 (309)
T PRK01259 111 NLLSSAGADRVLTVDLHADQIQGFFDIPVDNLYGSPILLEDIKKKNLENLVVVSPDV-------GGVVRARALAKRLDTD 183 (309)
T ss_pred HHHHHCCCCEEEEEECCHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCEEEECCC-------CHHHHHHHHHHHHCCC
T ss_conf 998523787389981676777542489711674408999999863888738991498-------6899999999972998
Q ss_pred EEECCHHH
Q ss_conf 67615223
Q gi|254780846|r 151 TVFIDELR 158 (324)
Q Consensus 151 v~~i~~~~ 158 (324)
..++...+
T Consensus 184 ~~~~~K~R 191 (309)
T PRK01259 184 LAIIDKRR 191 (309)
T ss_pred EEEEEEEC
T ss_conf 79999860
No 82
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=55.03 E-value=12 Score=18.53 Aligned_cols=77 Identities=22% Similarity=0.374 Sum_probs=39.0
Q ss_pred CCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC
Q ss_conf 33775560246775101264167615223023330230-----3689998725899999850000000001221002011
Q gi|254780846|r 130 GKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSS-----SNIRTALTKGHVLNAAHLLGYRFTIESDVIHGEKIGR 204 (324)
Q Consensus 130 G~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISS-----t~IR~~l~~Gdi~~an~lLGr~y~i~G~Vv~G~~~Gr 204 (324)
|.-++|....=+.+++.+|+...--..+...+-....| ..||..+..=.-+.++ -.|.|+.|.-.|.
T Consensus 6 GpagsGKsT~ak~lA~~l~~~~ldtG~ir~~ev~~~~s~ia~~~~VR~~l~~~Qr~~~~--------~~~~V~eGRDigt 77 (147)
T cd02020 6 GPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAK--------KPGIVLEGRDIGT 77 (147)
T ss_pred CCCCCCHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--------CCCEEEECCCCCC
T ss_conf 89978989999999999099077665425489989999981978899999999999976--------6996897131010
Q ss_pred EEEEEEEEEEH
Q ss_conf 01111121100
Q gi|254780846|r 205 TLGFPTANMQL 215 (324)
Q Consensus 205 ~lGfPTaNi~~ 215 (324)
.+ ||-|.+++
T Consensus 78 vV-~P~A~lKi 87 (147)
T cd02020 78 VV-FPDADLKI 87 (147)
T ss_pred EE-CCCCCEEE
T ss_conf 24-46747677
No 83
>pfam02906 Fe_hyd_lg_C Iron only hydrogenase large subunit, C-terminal domain.
Probab=54.87 E-value=18 Score=17.38 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=39.8
Q ss_pred CCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHH-CCCHHHHHHH
Q ss_conf 7977999837986898478886620000789999885113100022564057752-2830268886
Q gi|254780846|r 47 NSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETAN-YSAEQFIQKV 111 (324)
Q Consensus 47 ~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~-ls~e~Fi~~i 111 (324)
..+.+|.+.-|.-+.-|...-....-....+=...|+++|+++|+...+-.++.. .++++|.+.+
T Consensus 10 ~gk~vvasiaP~~~~~f~~~~~~~~~~~~~kl~~aLk~lGf~~V~d~a~gad~~~~~~~~E~~~~~ 75 (286)
T pfam02906 10 DGKKVVAQIAPAVRVAFGEEFGLPPGTVTGKLVAALRKLGFDYVFDTAFGADLTIMEEASEFLERL 75 (286)
T ss_pred CCCEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 899899997968899998985998105789999999985998999847889999999999999998
No 84
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=54.20 E-value=11 Score=18.73 Aligned_cols=60 Identities=20% Similarity=0.401 Sum_probs=40.5
Q ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 0268886214278029998345530337755602467751012641676152230233302303689998725
Q gi|254780846|r 105 EQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177 (324)
Q Consensus 105 e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~G 177 (324)
-+|+.+ ....=+..-||+|.||-.|.-|+--.--|+. +||.+++-+.+.. ---|+++..|
T Consensus 51 PdF~~n-~~~yq~g~IlVag~NFGcGSSREHApwALk~----~Gi~~VIA~SFAd--------IFy~Na~nnG 110 (191)
T COG0066 51 PDFVLN-VPPYQGGDILVAGENFGCGSSREHAPWALKD----YGIRAVIAPSFAD--------IFYRNAINNG 110 (191)
T ss_pred CCHHHC-CCCCCCCCEEEECCCCCCCCCHHHHHHHHHH----CCEEEEEECCHHH--------HHHHHHHHCC
T ss_conf 643215-8866786489966887788527789999997----5924999362999--------9870156508
No 85
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=53.34 E-value=19 Score=17.22 Aligned_cols=142 Identities=11% Similarity=0.131 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCCE-EEEEECC-CCCCHHHHHHHHHH---HHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 5211276101884-9999315-65028999999999---99502797799983798689847888662000078999988
Q gi|254780846|r 8 EINQSLPNHLKGG-VVAIGNF-DGIHLGHHLILEQA---IKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKIL 82 (324)
Q Consensus 8 ~~~~~~p~~~~~~-vvtiG~F-DGvH~GHq~Li~~~---~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l 82 (324)
|+.-.+.++.++. |..|... .-++-.-.+|+--+ +..+.+.-.+|+-+-|.-+.=- ...+...++ -..-.++|
T Consensus 57 E~~v~i~esVrg~dV~iiqs~~~pvnd~lmELll~idA~krasA~~It~ViPY~~YaRQDr-k~~~re~Is-aklvA~lL 134 (331)
T PRK02812 57 ELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRASARQITAVIPYYGYARADR-KTAGRESIT-AKLVANLI 134 (331)
T ss_pred CEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-CCCCCCCCC-HHHHHHHH
T ss_conf 8898656877887699983799984189999999999987757872799832554355676-668999834-99999788
Q ss_pred HHCCCCCCCCCCCH---------HHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCC-CCEEE
Q ss_conf 51131000225640---------577522830268886214278029998345530337755602467751012-64167
Q gi|254780846|r 83 EKMGFSALIRYKFT---------LETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKY-GFHTV 152 (324)
Q Consensus 83 ~~~Gid~vi~~~F~---------~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~-g~~v~ 152 (324)
+..|+|.++.++-- .-+.++++...+.+++.++--...++|+.|. |.+..-+.+++.. |..+.
T Consensus 135 ~~aG~d~vitvDlH~~qiqgfF~iPvd~l~a~~~l~~yi~~~~~~~~vVVsPD~-------G~~krA~~~A~~L~~~~~a 207 (331)
T PRK02812 135 TKAGVDRVLAMDLHSAQIQGYFDIPCDHIYGSPVLIDYLASKNLEDIVVVSPDV-------GGVARARAFAKKLNDAPLA 207 (331)
T ss_pred HHCCCCEEEEECCCHHHHHHCCCCCCCCEECCCHHHHHHHHCCCCCCEEECCCC-------CHHHHHHHHHHHCCCCCEE
T ss_conf 734887588734662888633699743146760679999862888717974794-------0899999999972799589
Q ss_pred ECCHHH
Q ss_conf 615223
Q gi|254780846|r 153 FIDELR 158 (324)
Q Consensus 153 ~i~~~~ 158 (324)
+++..+
T Consensus 208 ~~~K~R 213 (331)
T PRK02812 208 IIDKRR 213 (331)
T ss_pred EEECCC
T ss_conf 994245
No 86
>PRK00238 consensus
Probab=53.09 E-value=9.8 Score=19.10 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHCCCCCC-CCCCCHHH-HHHCCCHHHHHHHHCCCC---------CEEEEEECCCC
Q ss_conf 007899998851131000-22564057-752283026888621427---------80299983455
Q gi|254780846|r 73 SPPSIQEKILEKMGFSAL-IRYKFTLE-TANYSAEQFIQKVLVEWL---------EVKTVITGTKF 127 (324)
Q Consensus 73 ~~~~~k~~~l~~~Gid~v-i~~~F~~~-~a~ls~e~Fi~~iL~~~l---------~~k~ivVG~Df 127 (324)
++...|.++|+++|+++. +..++|++ +...+|.+++..+-..+. ....+|+|.|-
T Consensus 8 S~Sp~R~~lL~~~gi~f~~~~~~iDE~~~~~~~p~~~~~~lA~~KA~a~~~~~~~~~~~lVIgaDt 73 (198)
T PRK00238 8 SGSPRRRELLTQIGVPFSVLSAPIDETPLPDESPAAYVERLARGKAAAGLAMLGAEGPACVLGADT 73 (198)
T ss_pred CCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 899999999987899829983899999888889999999999999999999865389968994481
No 87
>cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=52.92 E-value=19 Score=17.18 Aligned_cols=128 Identities=17% Similarity=0.161 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHHCCC-CEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHH
Q ss_conf 0289999999999950279-779998379868984788866200007899998851131000225640577522830268
Q gi|254780846|r 30 IHLGHHLILEQAIKIANNS-PITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFI 108 (324)
Q Consensus 30 vH~GHq~Li~~~~~~a~~~-~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi 108 (324)
+|+||-.-.-...-.|+.. ...++-++-+=.....+.... ...+.+...+..++ +...+..+|+. +-+++
T Consensus 13 lHiGh~~~~~~~~~~ar~~~~~~~~~idd~~~~~~~~a~~~-~~~~~~~~~~~~~~--~~~~~~y~~~~------~~~~~ 83 (142)
T cd00802 13 LHIGHARTALLNDVLARYGNVLFILGIDDTGLPIEDKAEKE-GKLPKEEVEENIEE--IKEDLKYWFDS------AADDL 83 (142)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHH-CCCCHHHHHHHHHH--HHHHCEECCCE------EECHH
T ss_conf 41889999999999999819989998657992001167884-44889999999999--99865263401------64348
Q ss_pred HHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCE-EEECCHHHCCCCCCCCHH
Q ss_conf 886214278029998345530337755602467751012641-676152230233302303
Q gi|254780846|r 109 QKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFH-TVFIDELRNNKSQIVSSS 168 (324)
Q Consensus 109 ~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~-v~~i~~~~~~~~~~ISSt 168 (324)
........++..+++|.|... +-.. -...++.++...... +...+-+...++++.|.|
T Consensus 84 ~~~~~~~~~~~~~~~G~D~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~~g~KmSKS 142 (142)
T cd00802 84 LLLGYPFYPVDLVLGGKDQIP-HLEL-TRDLLKALGGKFPPPEVLHHGLLLGEDGKKMSKS 142 (142)
T ss_pred HHCCCCCCCCCEEEECCCCCC-CCHH-HHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 754667887657886621014-7699-9999998377889986786311488699867899
No 88
>KOG0229 consensus
Probab=52.28 E-value=16 Score=17.73 Aligned_cols=161 Identities=19% Similarity=0.169 Sum_probs=83.6
Q ss_pred HHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCC-CCH--HHHHHHH
Q ss_conf 7752283026888621427802999834553033775560246775101264167615223023330-230--3689998
Q gi|254780846|r 98 ETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQI-VSS--SNIRTAL 174 (324)
Q Consensus 98 ~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~-ISS--t~IR~~l 174 (324)
+|..-.|..|= .|-+. ||-+ +.++|..+|.+...+-.. ++ ...+..- +|+ ..|=+-+
T Consensus 99 k~KdYcP~vFR--~lRel-------------FgId---~~DYl~Slc~~~~l~e~s-sp-GksGS~Fy~S~DdrFiIKTv 158 (420)
T KOG0229 99 KFKDYCPMVFR--NLREL-------------FGID---PADYLLSLCGNPPLRELS-SP-GKSGSFFYLSYDDRFIIKTV 158 (420)
T ss_pred CHHHCCHHHHH--HHHHH-------------HCCC---HHHHHHHHHCCHHHHHCC-CC-CCCCEEEEEECCCEEEEEEC
T ss_conf 34432769999--99998-------------4898---599999864451035405-88-97400588951762899853
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEEEEEHHC-CCCCC-HHHHEEEEEEEECCCCCHHCCCCCCCCCCC
Q ss_conf 7258999998500000000012210020110111112110000-22231-011000247630565621105789972677
Q gi|254780846|r 175 TKGHVLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSP-DILLK-EGVYAIRFRTQDQTSYSGVANFGRNPTMVP 252 (324)
Q Consensus 175 ~~Gdi~~an~lLGr~y~i~G~Vv~G~~~Gr~lGfPTaNi~~~~-~~~p~-~GVY~~~v~~~~~~~~~~v~niG~~PT~~~ 252 (324)
..-+++-.-+||-..|... ...++ .++|+ .|+|.+.+.. +.+.|.-|+|== |..
T Consensus 159 ~~~E~~~l~~mLp~Yy~~v-------------------~~~~~~TLl~kf~Gly~vk~~g-g~k~yfvVM~Nl----f~~ 214 (420)
T KOG0229 159 RKSEVKVLLKMLPGYYQHV-------------------VEQNNRTLLPKFFGLYRVKPDG-GKKIYFVVMNNL----FPS 214 (420)
T ss_pred CHHHHHHHHHHHHHHHHHH-------------------HCCCCCEEEHHHCCEEEEEECC-CCEEEEEEECCC----CCC
T ss_conf 4889999999878888998-------------------6269974460021047986169-827999996476----788
Q ss_pred CCCEEEEEEE-ECCCCCCCCCEE----------EEEEEEECCCCCCCC----CHHHHHHHHHHHHHHHH
Q ss_conf 9714999994-067855189889----------999460000887468----98999999999799999
Q gi|254780846|r 253 NGPLLLESFI-FDFSQEIYGQRC----------TVSFFDYLRPEIKFK----DIEKLKIYMGEDEKKAR 306 (324)
Q Consensus 253 ~~~~~iE~hi-ldf~~dlYg~~i----------~v~f~~~iR~e~kF~----s~~~L~~qI~~D~~~a~ 306 (324)
.+-+|. +|-.|--||.+. ++-=++|++...+|. .-++|.+||+.||+.-.
T Consensus 215 ----~~~iH~kyDLKGSt~~R~askke~~k~~pTlKDlDf~~~~~~~~l~~~~~~~l~~ql~~Dce~Le 279 (420)
T KOG0229 215 ----RLKVHRKYDLKGSTVGREASKKEKIKELPTLKDLDFLNEGQKLYLGKEAKKALLKQLKRDCEFLE 279 (420)
T ss_pred ----CCCEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCHHHCCCCEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf ----75505776057873013454033304788522102440666586387999999999999999999
No 89
>TIGR00396 leuS_bact leucyl-tRNA synthetase; InterPro: IPR002302 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes the eubacterial and mitochondrial synthetases. The crystal structure of leucyl-tRNA synthetase from the hyperthermophile Thermus thermophilus has an overall architecture that is similar to that of isoleucyl-tRNA synthetase, except that the putative editing domain is inserted at a different position in the primary structure. This feature is unique to prokaryote-like leucyl-tRNA synthetases, as is the presence of a novel additional flexibly inserted domain . ; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=51.44 E-value=11 Score=18.76 Aligned_cols=191 Identities=17% Similarity=0.181 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHHHH-----CCCCEE-EEEEC--CCHHH--HHCCCCCCCCCCH--HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 650289999999999950-----279779-99837--98689--8478886620000--789999885113100022564
Q gi|254780846|r 28 DGIHLGHHLILEQAIKIA-----NNSPIT-VLSFN--PHPRT--IIQSSSPIFTLSP--PSIQEKILEKMGFSALIRYKF 95 (324)
Q Consensus 28 DGvH~GHq~Li~~~~~~a-----~~~~~~-viTF~--p~P~~--~~~~~~~~~~l~~--~~~k~~~l~~~Gid~vi~~~F 95 (324)
.|+|+||-.--.-.=-+| ++.... =|=|| ..|++ .+..+..|..=|. .+.=.+-|+.+|+++ ++
T Consensus 45 ~GLH~GHvR~YTItDvl~Ry~r~~GynVLHP~GwDAFGLPAEnaAI~~~~~P~~WT~~NI~~m~~Ql~~LGf~y----Dw 120 (916)
T TIGR00396 45 AGLHMGHVRNYTITDVLSRYKRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSY----DW 120 (916)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC----CH
T ss_conf 77501651423576499999986288324766757456425899986489870037899999999999845564----41
Q ss_pred HHHHHHCCCHH-------HHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHH---CC--CCC
Q ss_conf 05775228302-------6888621427802999834553033775560246775101264167615223---02--333
Q gi|254780846|r 96 TLETANYSAEQ-------FIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELR---NN--KSQ 163 (324)
Q Consensus 96 ~~~~a~ls~e~-------Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~---~~--~~~ 163 (324)
+.|++-..|+= |+ ++-.+. +-+.- +- --.||...+- |-.=+.|. +. .+.
T Consensus 121 ~RE~~T~~P~YYkwtQWiF~-~Lf~kG--LaY~k-----------e~----~VNWCP~d~T-VLANEqVi~DS~Gna~Sw 181 (916)
T TIGR00396 121 DREIATCDPEYYKWTQWIFL-ELFEKG--LAYVK-----------EA----TVNWCPNDGT-VLANEQVIIDSDGNARSW 181 (916)
T ss_pred HCCCCCCCCCCCHHHHHHHH-HHHHCC--CEEEE-----------EE----EEEECCCCCC-CCCCHHEEECCCCCCEEE
T ss_conf 10532388874336668889-997628--52763-----------11----1330677784-510203012278985322
Q ss_pred CCCHHHHHHHHHHHHH---HHHHHHHHHCCHHH-HHH--HHCCC-------CCCEEEEEEEEEEHHCCCCC---CHHHHE
Q ss_conf 0230368999872589---99998500000000-012--21002-------01101111121100002223---101100
Q gi|254780846|r 164 IVSSSNIRTALTKGHV---LNAAHLLGYRFTIE-SDV--IHGEK-------IGRTLGFPTANMQLSPDILL---KEGVYA 227 (324)
Q Consensus 164 ~ISSt~IR~~l~~Gdi---~~an~lLGr~y~i~-G~V--v~G~~-------~Gr~lGfPTaNi~~~~~~~p---~~GVY~ 227 (324)
+=+.+-.|+.|.|=-+ +-|.+||..==.+. +-- |+--| -|-+|.|+=+| .++- ..=--+
T Consensus 182 R~~~~Vekk~l~QW~LKIT~YAe~LL~dLe~L~D~WP~~VK~MQrNWIGkS~Gv~~~F~i~d-----~clkacn~~e~i~ 256 (916)
T TIGR00396 182 RGGTPVEKKELKQWFLKITAYAEELLNDLEELDDHWPESVKEMQRNWIGKSEGVEITFKIAD-----HCLKACNKKEKIA 256 (916)
T ss_pred CCCCCEEEEECCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEEEEEEEEEECC-----CHHHHCCCCCEEE
T ss_conf 48784466306751011337889854114204678873136404545655520489974257-----3121037875169
Q ss_pred EEEEEEECCCCCHHCCCCCCC
Q ss_conf 024763056562110578997
Q gi|254780846|r 228 IRFRTQDQTSYSGVANFGRNP 248 (324)
Q Consensus 228 ~~v~~~~~~~~~~v~niG~~P 248 (324)
+.++-.| + ..||+++...|
T Consensus 257 VFTTRPd-T-~fGvtYlalA~ 275 (916)
T TIGR00396 257 VFTTRPD-T-IFGVTYLALAP 275 (916)
T ss_pred EEECCCC-C-EEEEEEEEECC
T ss_conf 9866863-0-10026576615
No 90
>TIGR02837 spore_II_R stage II sporulation protein R; InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation , ..
Probab=49.46 E-value=9.8 Score=19.11 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=37.8
Q ss_pred CHHHHHHHHHH-HH-HHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEEEEEHHCCCCCCHHHH-EEEEEEEE--CCCCCH
Q ss_conf 30368999872-58-999998500000000012210020110111112110000222310110-00247630--565621
Q gi|254780846|r 166 SSSNIRTALTK-GH-VLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVY-AIRFRTQD--QTSYSG 240 (324)
Q Consensus 166 SSt~IR~~l~~-Gd-i~~an~lLGr~y~i~G~Vv~G~~~Gr~lGfPTaNi~~~~~~~p~~GVY-~~~v~~~~--~~~~~~ 240 (324)
|-..||+.+.+ -. .+..-+-.|..|.++ |.=| +.-||| +.-..++.|.|-| |.++.+.+ |.-||+
T Consensus 85 a~~~i~~~l~eI~~iA~~~~~~~G~~y~v~--v~l~-----~~~FPt---K~YGn~vlPaG~Y~A~rIliG~g~G~NWWC 154 (172)
T TIGR02837 85 ARRVIKENLPEIEKIAESVIKKEGADYKVR--VELG-----KVSFPT---KLYGNIVLPAGKYEALRILIGEGEGANWWC 154 (172)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCCCEEE--EEEE-----EEECCC---CCCCCCCCCCCCEEEEEEEEECCCCCCEEE
T ss_conf 999998518127899999999648983267--7652-----345686---444441155873278777874569875578
Q ss_pred HCC
Q ss_conf 105
Q gi|254780846|r 241 VAN 243 (324)
Q Consensus 241 v~n 243 (324)
|++
T Consensus 155 V~F 157 (172)
T TIGR02837 155 VLF 157 (172)
T ss_pred EEC
T ss_conf 725
No 91
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, small subunit; InterPro: IPR004608 Methylmalonyl-CoA mutase (5.4.99.2 from EC) catalyses the isomerization of succinyl-CoA to methylmalonyl-CoA during the synthesis of propionate from tricarboxylic acid-cycle intermediates in propionic acid fermentation. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in the mitochondrion and in Escherichia coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This family is this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved .; GO: 0004494 methylmalonyl-CoA mutase activity, 0031419 cobalamin binding, 0019652 lactate fermentation to propionate and acetate.
Probab=48.33 E-value=6.5 Score=20.25 Aligned_cols=119 Identities=10% Similarity=0.154 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHHHC--CCCCCCCCCCHHHHH-HCC--CHHHHHHHHCCCCCEEEEEECCCCCCCC--CCCCCHHHHHHH
Q ss_conf 000078999988511--310002256405775-228--3026888621427802999834553033--775560246775
Q gi|254780846|r 71 TLSPPSIQEKILEKM--GFSALIRYKFTLETA-NYS--AEQFIQKVLVEWLEVKTVITGTKFRFGK--DRAGDRGILQKR 143 (324)
Q Consensus 71 ~l~~~~~k~~~l~~~--Gid~vi~~~F~~~~a-~ls--~e~Fi~~iL~~~l~~k~ivVG~Df~FG~--~r~Gd~~~L~~~ 143 (324)
+..-++-.+.-+..- |+|-+.++|||..+. .++ ..+|-+.|=-+ ..|+.-+..+||+ +=+|..-+...+
T Consensus 325 ~VN~LR~~~atfsA~vgGadsitvlPFdva~~GG~pGt~ddF~~RIARN----~qllL~EE~h~grV~DPagGSyyvE~L 400 (642)
T TIGR00642 325 YVNLLRTSLATFSAAVGGADSITVLPFDVALQGGLPGTEDDFAERIARN----TQLLLKEEVHVGRVLDPAGGSYYVEEL 400 (642)
T ss_pred CEECHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHH----HHHHHHHHCCCCCEECCCCCCHHHHHH
T ss_conf 3102467788840213551225646721112787886434511454654----103655420357200688751338878
Q ss_pred HHCCC---CE-EEECCHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 10126---41-676152230233--3023036899987258999998500000000012
Q gi|254780846|r 144 GEKYG---FH-TVFIDELRNNKS--QIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDV 196 (324)
Q Consensus 144 ~~~~g---~~-v~~i~~~~~~~~--~~ISSt~IR~~l~~Gdi~~an~lLGr~y~i~G~V 196 (324)
-...+ .+ ...| ..-+| +...+..|...|.+-+++.|..+=-|.-.|.|.=
T Consensus 401 T~sla~~AWk~F~~v---E~~GGf~~A~~T~~~~k~~~acna~RA~~~A~Rr~~i~gvn 456 (642)
T TIGR00642 401 TDSLAEEAWKRFQEV---EDAGGFTKAAETEFVAKAVDACNAKRADDLATRREIITGVN 456 (642)
T ss_pred HHHHHHHHHHHHHHH---HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC
T ss_conf 999999999999999---85077201544478998999887552133311121220014
No 92
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=47.62 E-value=23 Score=16.65 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=8.9
Q ss_pred HHHHHHHCCCCEEEE
Q ss_conf 467751012641676
Q gi|254780846|r 139 ILQKRGEKYGFHTVF 153 (324)
Q Consensus 139 ~L~~~~~~~g~~v~~ 153 (324)
.|+++|++||...++
T Consensus 190 ~l~~Lc~~y~a~fII 204 (345)
T PRK02615 190 QLKELCKRYGALFIV 204 (345)
T ss_pred HHHHHHHHHCCEEEE
T ss_conf 999999995994898
No 93
>PRK04117 consensus
Probab=47.26 E-value=24 Score=16.61 Aligned_cols=141 Identities=15% Similarity=0.204 Sum_probs=72.6
Q ss_pred CCCCCCCCCCCCE-EEEEECCCC-CCHHHHHHHH--HHHHHH-CCCCEEEEEECCCHHHHHCCCCCCCC--CCHHHHHHH
Q ss_conf 5211276101884-999931565-0289999999--999950-27977999837986898478886620--000789999
Q gi|254780846|r 8 EINQSLPNHLKGG-VVAIGNFDG-IHLGHHLILE--QAIKIA-NNSPITVLSFNPHPRTIIQSSSPIFT--LSPPSIQEK 80 (324)
Q Consensus 8 ~~~~~~p~~~~~~-vvtiG~FDG-vH~GHq~Li~--~~~~~a-~~~~~~viTF~p~P~~~~~~~~~~~~--l~~~~~k~~ 80 (324)
|..-.++++.++. |+-+..+.+ ++-.=.+|+- .+.+.+ .+.-.+|+-+-|.-+ +++.... --+...=.+
T Consensus 39 E~~v~i~~~vrg~dV~ivqs~~~p~nd~lmELll~~~a~r~agA~~It~ViPY~~YsR----QDr~~~~ge~isak~vA~ 114 (309)
T PRK04117 39 EINVQISESVRGKDVFIIQPTCAPANDNLMELLIMTDALRRSSANSITAVVPYFGYAR----QDRKAAPRVPITAKLVAN 114 (309)
T ss_pred CEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC----CCCCCCCCCCCCHHHHHH
T ss_conf 8888668877899889991799982488999999999998748973889603550021----444569998701899998
Q ss_pred HHHHCCCCCCCCCCCH---------HHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 8851131000225640---------5775228302688862142780299983455303377556024677510126416
Q gi|254780846|r 81 ILEKMGFSALIRYKFT---------LETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHT 151 (324)
Q Consensus 81 ~l~~~Gid~vi~~~F~---------~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v 151 (324)
+|+..|+|.++.++.- ..+.++++...+.+++...--...++|+.| .|....-+.+++..|...
T Consensus 115 lL~~~G~d~vitvDlH~~~i~~fF~ip~~~l~~~~~~~~~i~~~~~~~~vvVsPD-------~Ga~~ra~~~A~~Lg~~~ 187 (309)
T PRK04117 115 LMQAAGIDRVVTMDLHAGQIQGFFDIPVDNLYGSIVFRDYIKSKNLKNPIIASPD-------IGGVARARYFAKKLGLDM 187 (309)
T ss_pred HHHHCCCCEEEEECCCHHHHHHCCCCCCCEEECCHHHHHHHHHHCCCCCEEECCC-------CHHHHHHHHHHHHCCCCE
T ss_conf 8864277658996178688740368973303453877899996188874697159-------319999999987427887
Q ss_pred EECCHHHC
Q ss_conf 76152230
Q gi|254780846|r 152 VFIDELRN 159 (324)
Q Consensus 152 ~~i~~~~~ 159 (324)
.+++..+.
T Consensus 188 ~~~~K~R~ 195 (309)
T PRK04117 188 VIVDKRRE 195 (309)
T ss_pred EEEEECCC
T ss_conf 99851137
No 94
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=47.25 E-value=14 Score=18.01 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=35.1
Q ss_pred HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHH
Q ss_conf 2688862142780299983455303377556024677510126416761522
Q gi|254780846|r 106 QFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDEL 157 (324)
Q Consensus 106 ~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~ 157 (324)
+|+=+ -...-+++-+|+|.||-.|.-|+--+--|+.+ ||++++-+.+
T Consensus 57 dF~LN-~~~~~~a~ILvag~NFGCGSSREhAvwAL~d~----Gir~VIA~SF 103 (201)
T PRK01641 57 DFVLN-QPRYQGASILLAGENFGCGSSREHAPWALADY----GFRVVIAPSF 103 (201)
T ss_pred CCCCC-CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHC----CCCEEEECHH
T ss_conf 75567-75668981899678767775088999999985----9989997259
No 95
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=44.97 E-value=25 Score=16.51 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=14.6
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 999834553033775560246775101264167615
Q gi|254780846|r 120 TVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFID 155 (324)
Q Consensus 120 ~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~ 155 (324)
.+-|..|...|... ..+..+.++.|.+++.+.
T Consensus 169 ~lkvvvD~~~Ga~~----~~~~~il~~lG~~v~~~~ 200 (434)
T cd05802 169 GLKIVLDCANGAAY----KVAPEVFRELGAEVIVIN 200 (434)
T ss_pred CCEEEEECCCCCHH----HHHHHHHHHCCCCEEEEC
T ss_conf 98899989986124----569999987298447742
No 96
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=44.90 E-value=26 Score=16.38 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=68.8
Q ss_pred CCCCCCCCCCCE-EEEEECCCCCCHHHHHHHHH--HHHHH-CCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 211276101884-99993156502899999999--99950-279779998379868984788866200007899998851
Q gi|254780846|r 9 INQSLPNHLKGG-VVAIGNFDGIHLGHHLILEQ--AIKIA-NNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEK 84 (324)
Q Consensus 9 ~~~~~p~~~~~~-vvtiG~FDGvH~GHq~Li~~--~~~~a-~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~ 84 (324)
..-.+.++.++. |+-+..+.-.+-.-.+|+-- +.+.| .+.-.+|+-|-|.-+.=- ...+...++ ...-.++| +
T Consensus 39 ~~v~i~e~vrg~dV~iiqs~~~pnd~lmELll~idA~r~a~A~~It~ViPY~~YaRQDr-~~~~ge~is-ak~vA~ll-~ 115 (301)
T PRK07199 39 SYVRLDSGVAGRTVVLVCSLDQPDEKLLPLLFAAEAARELGARRVVLVAPYLAYMRQDI-RFHPGEAIS-SRHFARLL-S 115 (301)
T ss_pred EEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHCCCC-CCCCCCCCC-HHHHHHHH-H
T ss_conf 89961798779838998899997388999999999998748874899815662101322-347998510-89999999-8
Q ss_pred CCCCCCCCCC------------CHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 1310002256------------4057752283026888621427802999834553033775560246775101264167
Q gi|254780846|r 85 MGFSALIRYK------------FTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTV 152 (324)
Q Consensus 85 ~Gid~vi~~~------------F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~ 152 (324)
.|+|.++.++ |+-...++++...+.+++.+.+ .+.++|+.|. |.....+.+++..|....
T Consensus 116 ~~~d~vitvDlH~h~~~~i~~ff~ip~~nl~~~~~l~~~i~~~~-~~~vvVsPD~-------G~~~ra~~~a~~lg~~~~ 187 (301)
T PRK07199 116 GSFDRLITVDPHLHRYHSLSEVYPIPARVLHAAPAIAAWIRAHV-PKPLLIGPDS-------ESEQWVSAVAGRAGAPHA 187 (301)
T ss_pred HHCCEEEEECCCCCCHHHHCCCCCCCCEEEEECHHHHHHHHHHC-CCCEEECCCC-------CHHHHHHHHHHHCCCCEE
T ss_conf 52776899704532267752677898177670587899998518-7753678887-------779999999986599879
Q ss_pred ECCH
Q ss_conf 6152
Q gi|254780846|r 153 FIDE 156 (324)
Q Consensus 153 ~i~~ 156 (324)
++..
T Consensus 188 ~~~K 191 (301)
T PRK07199 188 VLRK 191 (301)
T ss_pred EEEE
T ss_conf 9998
No 97
>TIGR01126 pdi_dom protein disulfide-isomerase domain; InterPro: IPR005788 This is a domain of eukaryotic protein disulphide isomerases, generally found in two copies. The domain is similar to thioredoxin but the redox-active disulphide region motif is APWCGHCK. ; GO: 0016853 isomerase activity.
Probab=44.41 E-value=6.4 Score=20.31 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=23.5
Q ss_pred HHHHHH-HHHH-HHHHHCCHHHHHHHHCCCCCCEEEEEEEEEEHHCCCC
Q ss_conf 872589-9999-8500000000012210020110111112110000222
Q gi|254780846|r 174 LTKGHV-LNAA-HLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDIL 220 (324)
Q Consensus 174 l~~Gdi-~~an-~lLGr~y~i~G~Vv~G~~~Gr~lGfPTaNi~~~~~~~ 220 (324)
|.-+.| ..++ +-|++.|.++ ||||..+=.+...-
T Consensus 50 i~~AKvDAt~~G~~l~~~y~V~-------------GfPTikff~~G~~~ 85 (107)
T TIGR01126 50 IVLAKVDATAEGKDLASRYGVS-------------GFPTIKFFPKGSKE 85 (107)
T ss_pred CEEEEEECCCCCCCCCCEECCC-------------CCCCEEEECCCCCC
T ss_conf 5478753684352010100220-------------25505786287814
No 98
>PRK00032 Maf-like protein; Reviewed
Probab=42.57 E-value=13 Score=18.33 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHCCCCCCC-CCCCHHH-HHHCCCHHHHHHH
Q ss_conf 0078999988511310002-2564057-7522830268886
Q gi|254780846|r 73 SPPSIQEKILEKMGFSALI-RYKFTLE-TANYSAEQFIQKV 111 (324)
Q Consensus 73 ~~~~~k~~~l~~~Gid~vi-~~~F~~~-~a~ls~e~Fi~~i 111 (324)
++...|.++|+++|+++-+ ..+||++ +...+|++++..+
T Consensus 8 S~S~~R~~lL~~~gi~f~~~~~~idE~~~~~~~p~~~~~~l 48 (189)
T PRK00032 8 SGSPRRRELLAQLGVPFEVLVTGIEEQRQPQESAQQYVERL 48 (189)
T ss_pred CCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 79999999998789980997399998888999999999999
No 99
>PRK04222 consensus
Probab=42.36 E-value=19 Score=17.27 Aligned_cols=37 Identities=5% Similarity=0.146 Sum_probs=26.7
Q ss_pred HHHHHHHHHHCCCCCC-CCCCCHHH-HHHCCCHHHHHHH
Q ss_conf 7899998851131000-22564057-7522830268886
Q gi|254780846|r 75 PSIQEKILEKMGFSAL-IRYKFTLE-TANYSAEQFIQKV 111 (324)
Q Consensus 75 ~~~k~~~l~~~Gid~v-i~~~F~~~-~a~ls~e~Fi~~i 111 (324)
...|.++|+++|+++- +..++|++ ....+|.+++..+
T Consensus 11 SprR~~lL~~~gi~F~~~~~~iDE~~~~~~~p~~~~~~l 49 (191)
T PRK04222 11 SAYRRELLGRLQLDFDTARPEVDEQALPGETPSALASRL 49 (191)
T ss_pred CHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999999789980997899998878999999999999
No 100
>pfam00113 Enolase_C Enolase, C-terminal TIM barrel domain.
Probab=41.54 E-value=29 Score=16.05 Aligned_cols=109 Identities=15% Similarity=0.159 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCC------------CHHHHHHHHHHHC----CCCCCCCCCCHH
Q ss_conf 999999999950279779998379868984788866200------------0078999988511----310002256405
Q gi|254780846|r 34 HHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTL------------SPPSIQEKILEKM----GFSALIRYKFTL 97 (324)
Q Consensus 34 Hq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l------------~~~~~k~~~l~~~----Gid~vi~~~F~~ 97 (324)
..+++..+++.|.-.+-+.+..|.-.++|..+++....+ .+.++-+.++.++ .|- .+.=||+
T Consensus 82 aL~li~eAi~~ag~~~di~ialD~AAsefy~~~~g~Y~l~~~~~~~~~~~~~t~~elid~y~~l~~~yPIi-sIEDpl~- 159 (296)
T pfam00113 82 ALDLIVEAIEKAGYTGKVKIAMDVASSEFYNKKDGKYDLDFKNPKSDPSKWLTSDQLADLYKELIKKYPIV-SIEDPFD- 159 (296)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCHHHHHCCCCCEEEECCCCCCCCCCCEECHHHHHHHHHHHHHHCCEE-EEECCCC-
T ss_conf 99999999997489886489960256866216797167425656777562208999999999999869988-9967988-
Q ss_pred HHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 775228302688862142780299983455303377556024677510126416761
Q gi|254780846|r 98 ETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFI 154 (324)
Q Consensus 98 ~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i 154 (324)
.-..+.|- + |.+.++-+..+||.|.. .-|.+.|++-.++.-.+.+.|
T Consensus 160 ---e~D~~gw~-~-lt~~lg~~~qiVGDDL~-----~Tn~~rl~~gi~~~~~NaiLi 206 (296)
T pfam00113 160 ---EDDWEAWK-K-LTASLGDKIQIVGDDLT-----VTNPKRIAKAIEKKACNSLLL 206 (296)
T ss_pred ---CHHHHHHH-H-HHHHHCCCEEEECCCCC-----CCCHHHHHHHHHCCCCCCEEE
T ss_conf ---12499999-9-99974995799898755-----679999999985487771697
No 101
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=41.54 E-value=21 Score=16.95 Aligned_cols=53 Identities=9% Similarity=0.175 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 000789999885113100022564057752283026888621427802999834553033
Q gi|254780846|r 72 LSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGK 131 (324)
Q Consensus 72 l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~ 131 (324)
+.+.++-.++| +.|+|.+++=. .+-.+| +|+++ +.+.++.+.||++-|.+.+.
T Consensus 83 Irs~e~~~~ll-~~GadkVvigs----~a~~~p-~~i~~-~~~~~G~q~Iv~siD~~~~~ 135 (253)
T PRK02083 83 IRSVEDARRLL-RAGADKVSINS----AAVADP-ELITE-LADRFGSQCIVVAIDAKRDG 135 (253)
T ss_pred CCCHHHHHHHH-HCCCCEEEECC----HHHHCC-CHHHH-HHHHCCCEEEEEEEEEEECC
T ss_conf 21389876898-77987899998----465385-35578-89746983599999988737
No 102
>PRK01659 consensus
Probab=41.45 E-value=18 Score=17.33 Aligned_cols=52 Identities=10% Similarity=0.194 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 00078999988511310002256405775228302688862142780299983455303
Q gi|254780846|r 72 LSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFG 130 (324)
Q Consensus 72 l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG 130 (324)
+.+.++=..+| +.|+|.+++=. +...--+|+++ +.+.++.+.|+++-|++..
T Consensus 83 Irs~e~~~~~l-~~GadkViigs-----~a~~n~~~i~~-~~~~~G~q~IvvsiD~k~~ 134 (252)
T PRK01659 83 ISSVKDMKRLL-RAGADKVSINS-----AAVLRPELITE-GADHFGSQCIVVAIDAKYD 134 (252)
T ss_pred EECHHHHHHHH-HCCCCEEEECH-----HHHHCHHHHHH-HHHHCCCEEEEEEEEEEEE
T ss_conf 20068888987-44885598317-----77529153214-6764686326999998970
No 103
>PRK00648 Maf-like protein; Reviewed
Probab=41.37 E-value=20 Score=17.13 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHCCCCCCCC-CCCHHHH--HHCCCHHHHHHH
Q ss_conf 00789999885113100022-5640577--522830268886
Q gi|254780846|r 73 SPPSIQEKILEKMGFSALIR-YKFTLET--ANYSAEQFIQKV 111 (324)
Q Consensus 73 ~~~~~k~~~l~~~Gid~vi~-~~F~~~~--a~ls~e~Fi~~i 111 (324)
++...|.++|+++|+++.+. .+|+++- ..++|.+.+..+
T Consensus 9 S~S~~R~~lL~~~gi~f~v~~~~~dEe~~~~~~~p~~~~~~l 50 (191)
T PRK00648 9 SSSPRRKEILEGFRIPFEVIPSPFVEESYPYSLDPEEYTLEL 50 (191)
T ss_pred CCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 899999999997799959978999877677789999999999
No 104
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=40.76 E-value=28 Score=16.10 Aligned_cols=14 Identities=29% Similarity=0.166 Sum_probs=7.4
Q ss_pred EEEEECCCCCCHHHH
Q ss_conf 999931565028999
Q gi|254780846|r 21 VVAIGNFDGIHLGHH 35 (324)
Q Consensus 21 vvtiG~FDGvH~GHq 35 (324)
.|+|| .|+=|.+..
T Consensus 38 ~VvVG-~D~R~~S~~ 51 (459)
T cd03088 38 TVAVG-RDLRPSSPR 51 (459)
T ss_pred EEEEE-ECCCCCHHH
T ss_conf 69999-689978799
No 105
>PRK00884 Maf-like protein; Reviewed
Probab=39.74 E-value=22 Score=16.86 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=26.8
Q ss_pred HHHHHHHHHHCCCCCCCC-CCCHHH-HHHCCCHHHHHHH
Q ss_conf 789999885113100022-564057-7522830268886
Q gi|254780846|r 75 PSIQEKILEKMGFSALIR-YKFTLE-TANYSAEQFIQKV 111 (324)
Q Consensus 75 ~~~k~~~l~~~Gid~vi~-~~F~~~-~a~ls~e~Fi~~i 111 (324)
...|.++|+++|+++.+. .+||++ ....+|.+++..+
T Consensus 10 SprR~~lL~~~gi~f~v~~~~idE~~~~~~~p~~~~~~l 48 (194)
T PRK00884 10 SPYRRALLEKLQLPFECAAPEVDETPRPGESPRQLVLRL 48 (194)
T ss_pred CHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999998789995897999998888899999999999
No 106
>PRK01441 Maf-like protein; Reviewed
Probab=39.57 E-value=25 Score=16.44 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHCCCCCC--CCCCCHHH-HHHCCCHHHHHH
Q ss_conf 0007899998851131000--22564057-752283026888
Q gi|254780846|r 72 LSPPSIQEKILEKMGFSAL--IRYKFTLE-TANYSAEQFIQK 110 (324)
Q Consensus 72 l~~~~~k~~~l~~~Gid~v--i~~~F~~~-~a~ls~e~Fi~~ 110 (324)
-+....|.++|+++|++.. ...+||+. ....+|.+++..
T Consensus 10 AS~SprR~~LL~~~gi~~~~v~p~~iDE~~~~~~~p~~~~~~ 51 (207)
T PRK01441 10 ASGSPRRLELLNQAGIEPDRLRPADIDETPKRGEHPRSLARR 51 (207)
T ss_pred ECCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf 689999999998679981699769978888866498999999
No 107
>PRK05259 consensus
Probab=39.35 E-value=31 Score=15.83 Aligned_cols=146 Identities=15% Similarity=0.243 Sum_probs=71.1
Q ss_pred ECCCCCCCCCCCCCCCE-EEEEECCC-CC--CHHHHHHHHHHHHHH-CCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHH
Q ss_conf 24885211276101884-99993156-50--289999999999950-279779998379868984788866200007899
Q gi|254780846|r 4 FHNIEINQSLPNHLKGG-VVAIGNFD-GI--HLGHHLILEQAIKIA-NNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQ 78 (324)
Q Consensus 4 ~~~~~~~~~~p~~~~~~-vvtiG~FD-Gv--H~GHq~Li~~~~~~a-~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k 78 (324)
|-+=|..-.++++.++. |+.+..+- .+ ++=..-++-.+.+.+ .+.-.+|+-+-|.-+.=-. ..+...++ -..-
T Consensus 32 F~DGE~~v~i~~~vrg~dV~ivqs~~~p~nd~lmELll~i~A~r~~~A~~It~ViPY~~YsRQDr~-~~~~e~is-ak~v 109 (310)
T PRK05259 32 FADQEIFVEIQENVRGEDVFVIQSTSYPANDHLMELLIMIDALRRSSARRITAVIPYFGYARQDRK-PGPRTPIS-AKLV 109 (310)
T ss_pred CCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC-CCCCCCEE-HHHH
T ss_conf 899988996478778998899907999840889999999999987388717999414551115577-89998665-8887
Q ss_pred HHHHHHCCCCCCCCCCCHH---------HHHHCCCHHHHHHHHCCCCCE-EEEEECCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 9988511310002256405---------775228302688862142780-299983455303377556024677510126
Q gi|254780846|r 79 EKILEKMGFSALIRYKFTL---------ETANYSAEQFIQKVLVEWLEV-KTVITGTKFRFGKDRAGDRGILQKRGEKYG 148 (324)
Q Consensus 79 ~~~l~~~Gid~vi~~~F~~---------~~a~ls~e~Fi~~iL~~~l~~-k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g 148 (324)
.++|+..|+|.++.++--. -+-+++|...+.+++.+++.. ..++|+.|. |.+..-+++++..|
T Consensus 110 A~lL~~~G~d~vitvDlH~~~i~gfF~ip~dnl~a~~~l~~~i~~~~~~~~~vvVsPD~-------G~~~ra~~~a~~l~ 182 (310)
T PRK05259 110 ANLITEAGADRVLTLDLHAGQIQGFFDIPTDNLYAAPVMARDIKARYDLGNVMVVSPDV-------GGVVRARALAKRLD 182 (310)
T ss_pred HHHHHCCCCCEEEEECCCCHHHHHHCCCCCCEEEEEEEHHHHHHHHCCCCCEEEECCCC-------HHHHHHHHHHHHCC
T ss_conf 51121047766899627857778515997664982671167898638976639991492-------69999999999819
Q ss_pred CEEEECCHHH
Q ss_conf 4167615223
Q gi|254780846|r 149 FHTVFIDELR 158 (324)
Q Consensus 149 ~~v~~i~~~~ 158 (324)
....++...+
T Consensus 183 ~~~~~~~K~R 192 (310)
T PRK05259 183 APLAIVDKRR 192 (310)
T ss_pred CCEEEEEEEE
T ss_conf 9678999860
No 108
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=38.76 E-value=32 Score=15.77 Aligned_cols=95 Identities=16% Similarity=0.252 Sum_probs=53.1
Q ss_pred HHHHHHHHHHCCCCCCC-CCC-CHH-HHHHCCCHHHHHHHH-------CCC---CCEEEEEE-CCCCCCCCCCCCCHHHH
Q ss_conf 78999988511310002-256-405-775228302688862-------142---78029998-34553033775560246
Q gi|254780846|r 75 PSIQEKILEKMGFSALI-RYK-FTL-ETANYSAEQFIQKVL-------VEW---LEVKTVIT-GTKFRFGKDRAGDRGIL 140 (324)
Q Consensus 75 ~~~k~~~l~~~Gid~vi-~~~-F~~-~~a~ls~e~Fi~~iL-------~~~---l~~k~ivV-G~Df~FG~~r~Gd~~~L 140 (324)
+++...-|++.|++.+- .++ .++ .|..++...-+.++| .-. +++-.|+. |.|.. .+..|
T Consensus 109 L~~~a~~Lk~aGL~riNISLDsLd~~~f~~IT~~~~l~~Vl~gI~~A~~~G~~~vKiN~V~~~g~N~d-------Ei~~l 181 (334)
T PRK00164 109 LARRAAALKDAGLTRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLEPVKVNAVLMKGVNDD-------EIPDL 181 (334)
T ss_pred HHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHH-------HHHHH
T ss_conf 99999999985998699711318999999984899759999999999958987616899963798989-------99999
Q ss_pred HHHHHCCCCEEEECCHHHCCCC------CCCCHHHHHHHHHH
Q ss_conf 7751012641676152230233------30230368999872
Q gi|254780846|r 141 QKRGEKYGFHTVFIDELRNNKS------QIVSSSNIRTALTK 176 (324)
Q Consensus 141 ~~~~~~~g~~v~~i~~~~~~~~------~~ISSt~IR~~l~~ 176 (324)
.++++++++.+..|+-+....+ .-+|+..|++.|.+
T Consensus 182 i~~~~~~~i~vRFIE~Mp~g~~~~~~~~~~~~~~~i~~~l~~ 223 (334)
T PRK00164 182 LRWAKDRGIQLRFIELMPTGEGNEWFRDHHLSGAEIRARLAE 223 (334)
T ss_pred HHHHHHCCCEEEEEEEECCCCCCCHHHCCCCCHHHHHHHHHH
T ss_conf 999964696599999821677764353065489999999985
No 109
>PRK03415 consensus
Probab=38.74 E-value=14 Score=18.09 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHCCCCCCCC-CCCHHH-HHHCCCHHHHHHHH
Q ss_conf 0789999885113100022-564057-75228302688862
Q gi|254780846|r 74 PPSIQEKILEKMGFSALIR-YKFTLE-TANYSAEQFIQKVL 112 (324)
Q Consensus 74 ~~~~k~~~l~~~Gid~vi~-~~F~~~-~a~ls~e~Fi~~iL 112 (324)
....|.++|+.+|+++.++ .++|++ ....+|.+++..+-
T Consensus 9 ~S~~R~~lL~~~gi~f~vi~~~iDE~~~~~~~p~~~v~~lA 49 (197)
T PRK03415 9 GSPRRQELLAQLGVTFERLVTGIEEQRQPQESAQQYVVRLA 49 (197)
T ss_pred CCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999997899968976899999888999999999999
No 110
>pfam09987 DUF2226 Uncharacterized protein conserved in archaea (DUF2226). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=37.85 E-value=19 Score=17.17 Aligned_cols=36 Identities=22% Similarity=0.525 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEE
Q ss_conf 0000789999885113100022564057752283026888621427802
Q gi|254780846|r 71 TLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVK 119 (324)
Q Consensus 71 ~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k 119 (324)
.+.+.+.|.++|+++||+ .+.++|++++|.+.+.+.
T Consensus 144 ~~~d~~sREELLKKlGIK-------------ePdEe~VE~ILed~f~~~ 179 (252)
T pfam09987 144 EVEEPESREELLKKLGIK-------------EPDEESVEAILEDYFEEE 179 (252)
T ss_pred HHCCCCHHHHHHHHHCCC-------------CCCHHHHHHHHHHHCCCC
T ss_conf 853951399999981899-------------995899999999853887
No 111
>PRK03411 consensus
Probab=37.45 E-value=22 Score=16.85 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=26.2
Q ss_pred HHHHHHHHHHCCCCCC-CCCCCHHH-HHHCCCHHHHHHH
Q ss_conf 7899998851131000-22564057-7522830268886
Q gi|254780846|r 75 PSIQEKILEKMGFSAL-IRYKFTLE-TANYSAEQFIQKV 111 (324)
Q Consensus 75 ~~~k~~~l~~~Gid~v-i~~~F~~~-~a~ls~e~Fi~~i 111 (324)
...|.++|+++|+++. +..++|++ ....+|++++..+
T Consensus 10 SprR~~lL~~~gi~f~~~~~~iDE~~~~~~~p~~~v~~l 48 (194)
T PRK03411 10 SPWRRALLEKLQIPFECAAPEVDETPRSGESPRQLVLRL 48 (194)
T ss_pred CHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999998789996897999999989998999999999
No 112
>pfam04002 DUF2466 Protein of unknown function (DUF2466). This family was named initially with reference to the E. coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions. However the relevant mutation has subsequently been shown to be in recG, where radC is in fact an allele of recG. In addition, a personal communication from Claverys, J-P, et al, indicates a total failure of all attempts to characterize a radiation-related function for RadC in Streptococcus pneumoniae, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair.
Probab=37.36 E-value=22 Score=16.84 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=37.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCC
Q ss_conf 499993156502899999999999502797799983798689847888662000
Q gi|254780846|r 20 GVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLS 73 (324)
Q Consensus 20 ~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~ 73 (324)
-.++.|.-|....-=+.+++.|+.. +. ..++...+||+--..|++....+|
T Consensus 39 ~~i~~Gt~~~~~v~pReI~~~Al~~--~A-~~iIl~HNHPSG~~~PS~~D~~~T 89 (123)
T pfam04002 39 EEVSEGTVNSASVHPREIFKRALRL--NA-AAVILAHNHPSGDPTPSQADIELT 89 (123)
T ss_pred EEECCCCCCEEEECHHHHHHHHHHC--CC-CEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 9973578846788799999999983--89-869998318999899588799999
No 113
>PRK02621 consensus
Probab=37.21 E-value=24 Score=16.59 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 0007899998851131000225640577522830268886214278029998345530337
Q gi|254780846|r 72 LSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKD 132 (324)
Q Consensus 72 l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~ 132 (324)
+.+.++=.++| +.|+|.+++=.. +--+ -+|+++ +.+.++.+.||++-|++-+..
T Consensus 83 Irs~e~~~~ll-~~GadkVii~s~----a~~n-p~~~~~-~~~~fG~q~Iv~siD~k~~~~ 136 (254)
T PRK02621 83 ISSLEGIKELL-RAGADKVSLNSA----AVRD-PDLVRQ-ASDRFGSQCIVVAIDARRRKP 136 (254)
T ss_pred EEEHHHHHHHH-HCCCCEEEECCH----HHHC-CCHHHH-HHHHCCCCCEEEEEEEECCCC
T ss_conf 53579999999-749998999886----7647-354455-687569843399999553534
No 114
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=36.81 E-value=34 Score=15.58 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCC---CCCCHHHHHHHHHHHCCCCC--CCCCCCHHHH--HHCCCH
Q ss_conf 9999999999950279779998379868984788866---20000789999885113100--0225640577--522830
Q gi|254780846|r 33 GHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPI---FTLSPPSIQEKILEKMGFSA--LIRYKFTLET--ANYSAE 105 (324)
Q Consensus 33 GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~---~~l~~~~~k~~~l~~~Gid~--vi~~~F~~~~--a~ls~e 105 (324)
-.+..++.+-+.|+..+.- +||-|-+-.++++..+. ..+..++.--++|..+|++. .+.+.-.-.. ..-+.+
T Consensus 89 ~i~~~l~~iG~~ak~~~iR-ls~HPgqf~vL~S~~~~Vv~~si~dL~~Ha~~ld~mGl~~~~~i~IHigg~ygdk~~a~~ 167 (316)
T PRK02308 89 AFKEELRKIGALIKEHNMR-LSFHPDQFVVLNSPKPEVVENSIKDLEYHARLLDLMGIEDSSKINIHVGGAYGDKEKALE 167 (316)
T ss_pred HHHHHHHHHHHHHHHHCCE-EEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 9999999999999982945-862797623268998899999999999999999984799886289981476698789999
Q ss_pred HHHHHH--HCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 268886--21427802999834553033775560246775101264167
Q gi|254780846|r 106 QFIQKV--LVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTV 152 (324)
Q Consensus 106 ~Fi~~i--L~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~ 152 (324)
.|++++ |.+..+. .+++=.|= +..++++|-.+|++.|+.++
T Consensus 168 rf~~n~~~L~~~vr~-RL~lENDD-----k~ysv~dll~i~~~~~iPiV 210 (316)
T PRK02308 168 RFIENIKKLPESIKK-RLTLENDD-----KTYTVEELLSICEKLGIPVV 210 (316)
T ss_pred HHHHHHHHCCHHHHH-EEEEECCC-----CCCCHHHHHHHHHHHCCCEE
T ss_conf 999988658996732-68995588-----60579999999873099879
No 115
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=36.79 E-value=34 Score=15.57 Aligned_cols=122 Identities=17% Similarity=0.256 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC-CHHHHHHCCCHHHHHH
Q ss_conf 899999999999502797799983798689847888662000078999988511310002256-4057752283026888
Q gi|254780846|r 32 LGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYK-FTLETANYSAEQFIQK 110 (324)
Q Consensus 32 ~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~-F~~~~a~ls~e~Fi~~ 110 (324)
..|-.-|+.+++.|++.+.-++. | .+ ..-+..+|.+.|+++|+|++.++- +|.+....+|-+-+.+
T Consensus 90 ~a~d~TI~~aV~aA~k~G~~v~v-D-----lI-------~v~d~~~ra~el~~lGvd~I~vH~G~D~Q~~g~~p~~~l~~ 156 (429)
T PRK07028 90 VADDSTIADAVRAARKYGVLVMA-D-----LI-------NVPDPVKRAVELEELGVDIINVHVGIDQQMLGKDPLELLKK 156 (429)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEE-E-----EC-------CCCCHHHHHHHHHHCCCCEEEEEEEECHHHCCCCHHHHHHH
T ss_conf 78836999999999970988999-8-----55-------89988999999997099889997623355317984999999
Q ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCH-HHCCCCCCCCHHHHHHHHHHH
Q ss_conf 6214278029998345530337755602467751012641676152-230233302303689998725
Q gi|254780846|r 111 VLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDE-LRNNKSQIVSSSNIRTALTKG 177 (324)
Q Consensus 111 iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~-~~~~~~~~ISSt~IR~~l~~G 177 (324)
+ .+.+++..=|.| |- |.++..+.- +.|-.++++-- +....+-.=+..+||++|..+
T Consensus 157 v-~~~~~~~vAVAG-----Gi----~~~t~~~~v-~~GAdIvIVGgaI~~a~dp~~aAr~ir~ai~~~ 213 (429)
T PRK07028 157 V-SEEVSIPIAAAG-----GL----DAETAVKAV-EAGADIVIVGGNIYKSADVTGAARDIREALDSP 213 (429)
T ss_pred H-HHHCCCEEEEEC-----CC----CHHHHHHHH-HCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9-975597189966-----87----877699999-759989998940057999799999999997376
No 116
>PRK02141 Maf-like protein; Reviewed
Probab=36.71 E-value=20 Score=17.03 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHCCCCCCC-CCCCHHH-HHHCCCHHHHHHH
Q ss_conf 0078999988511310002-2564057-7522830268886
Q gi|254780846|r 73 SPPSIQEKILEKMGFSALI-RYKFTLE-TANYSAEQFIQKV 111 (324)
Q Consensus 73 ~~~~~k~~~l~~~Gid~vi-~~~F~~~-~a~ls~e~Fi~~i 111 (324)
+....|.++|+++|+++.+ ..++|++ ....+|.+.+..+
T Consensus 15 S~SprR~eLL~~~Gi~f~v~~~~iDE~~~~~~~p~~~~~~l 55 (206)
T PRK02141 15 SSSRYRRELLERLRLPFDVVSPDIDETPLAGETPAATALRL 55 (206)
T ss_pred CCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 79999999998789995998589998889999999999999
No 117
>PRK01839 Maf-like protein; Reviewed
Probab=36.60 E-value=23 Score=16.74 Aligned_cols=37 Identities=11% Similarity=0.281 Sum_probs=24.7
Q ss_pred HHHHHHHHHHCCCCCC-CCCCCHHH-------HHHCCCHHHHHHH
Q ss_conf 7899998851131000-22564057-------7522830268886
Q gi|254780846|r 75 PSIQEKILEKMGFSAL-IRYKFTLE-------TANYSAEQFIQKV 111 (324)
Q Consensus 75 ~~~k~~~l~~~Gid~v-i~~~F~~~-------~a~ls~e~Fi~~i 111 (324)
-..|.++|+++|+++- +..++|++ +...+|++++.++
T Consensus 18 SprR~~lL~~~gi~f~~~~~~~dE~~~~~e~~~~~~~p~~~v~~l 62 (209)
T PRK01839 18 SPRRQELLQQLGVRYELLLPRPDEDAEALEAELPGEAPDAYVQRV 62 (209)
T ss_pred CHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999998789995897889987632011337899989999999
No 118
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=36.23 E-value=23 Score=16.64 Aligned_cols=35 Identities=11% Similarity=-0.032 Sum_probs=17.8
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCH
Q ss_conf 029998345530337755602467751012641676152
Q gi|254780846|r 118 VKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDE 156 (324)
Q Consensus 118 ~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~ 156 (324)
.+.+-|..|...|... ..+.++.+..|+++..+..
T Consensus 161 ~~~~kivvD~~~Ga~~----~~~~~il~~lG~~v~~i~~ 195 (443)
T cd03089 161 KRPLKVVVDAGNGAAG----PIAPQLLEALGCEVIPLFC 195 (443)
T ss_pred CCCCEEEEECCCCCCH----HEHHHHHHHCCCEEEECCC
T ss_conf 5786899988998531----3438789875993643366
No 119
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase; InterPro: IPR005216 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase converting the inactive thiol form of the enzyme to the active form. ; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity.
Probab=36.07 E-value=31 Score=15.88 Aligned_cols=151 Identities=18% Similarity=0.145 Sum_probs=85.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCCCC----
Q ss_conf 9993156502899999999999502797799983798689847888662000078999988511--3100022564----
Q gi|254780846|r 22 VAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM--GFSALIRYKF---- 95 (324)
Q Consensus 22 vtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~--Gid~vi~~~F---- 95 (324)
..+-+-.-+-.||+-+++.+.....-....++ +.+. ...+.++|..++.+- +++.+.+.+=
T Consensus 147 ~~~~~~~p~~~g~~~l~~~~~~~~~~~~~~~~----------~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~g~~y~ 213 (342)
T TIGR00124 147 SIVLNANPFTLGHRYLIEQAARQCDWLHLFVV----------KEDA---SLFSYDDRFELVKQGIADLSNVTLHPGSAYI 213 (342)
T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCEEEEEEE----------CCCC---CCCCHHHHHHHHHHHCCCCCCEEEECCCHHE
T ss_conf 22441564323136788877630672688886----------0432---1033056789986310244422543461020
Q ss_pred -----------------HHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHH---HHHHH-HCCCCEEEEC
Q ss_conf -----------------05775228302688862142780299983455303377556024---67751-0126416761
Q gi|254780846|r 96 -----------------TLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGI---LQKRG-EKYGFHTVFI 154 (324)
Q Consensus 96 -----------------~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~---L~~~~-~~~g~~v~~i 154 (324)
+.....++-.-|-. .+...+++.+-.||.+--.--.+.-+-.. +.... ..-.++++.+
T Consensus 214 ~~~~~~p~y~~~~~~~~~~~~~~~d~~~~~~-~~~~~lg~~~~~~g~~p~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~ 292 (342)
T TIGR00124 214 ISRATFPGYFLKEQGVVDDCYTEIDLKLFRL-KLAPALGITHRFVGTEPLCPVTALYNQKLKYWLEEPGLDAPPIEVVEI 292 (342)
T ss_pred EHHHHCCCHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 0011023023210000112232456888988-765664222321044311034566556778876413677763012223
Q ss_pred CHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52230233--3023036899987258999998500
Q gi|254780846|r 155 DELRNNKS--QIVSSSNIRTALTKGHVLNAAHLLG 187 (324)
Q Consensus 155 ~~~~~~~~--~~ISSt~IR~~l~~Gdi~~an~lLG 187 (324)
+.... .+ .++|++++|+++.+++......+.-
T Consensus 293 ~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~p 326 (342)
T TIGR00124 293 PRKLA-AGDLGPISASTVRELLAKGDWAALAPLVP 326 (342)
T ss_pred HHHHH-CCCCCCHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 33442-14421001678998873010577876400
No 120
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=35.86 E-value=35 Score=15.48 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHCCCCCCEEE
Q ss_conf 23036899987258999998500000000012-21002011011
Q gi|254780846|r 165 VSSSNIRTALTKGHVLNAAHLLGYRFTIESDV-IHGEKIGRTLG 207 (324)
Q Consensus 165 ISSt~IR~~l~~Gdi~~an~lLGr~y~i~G~V-v~G~~~Gr~lG 207 (324)
|=+|..+++-+--.+-.|..-+||+-.+.|+= .+-...++++|
T Consensus 230 Iv~tfaSni~Ri~~i~~~A~~~gR~vvv~GrSm~~~~~~a~~lg 273 (555)
T COG0595 230 IVTTFASNIERIQTIIDAAEKLGRKVVVTGRSMERLIAIARRLG 273 (555)
T ss_pred EEEECHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCC
T ss_conf 99973446899999999999809919998675999999876436
No 121
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=35.15 E-value=36 Score=15.41 Aligned_cols=91 Identities=11% Similarity=0.149 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCC--------CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHH
Q ss_conf 999999999502797799983798689847888662--------000078999988511310002256405775228302
Q gi|254780846|r 35 HLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIF--------TLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQ 106 (324)
Q Consensus 35 q~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~--------~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~ 106 (324)
+.|++-++++|+++..+++|....-+++|..=.... ..=+.++=...+++.|.|+-+.-.+|+ -|
T Consensus 212 ~~Vv~~L~~LA~~G~tiI~tIHQPSs~lF~lFd~i~lla~Grvvy~G~p~~a~~FF~~~Gpd~~cP~~yNP-------AD 284 (671)
T TIGR00955 212 YSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILLAEGRVVYLGSPDQAVPFFSELGPDFPCPENYNP-------AD 284 (671)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCEEEEECCEEEEECCCHHHHHHHHHCCCCCCCCCCCCC-------HH
T ss_conf 99999999985089799998305618898511716775277279827810368989844888789788888-------88
Q ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCCCC-CHHHHHHHHHC
Q ss_conf 68886214278029998345530337755-60246775101
Q gi|254780846|r 107 FIQKVLVEWLEVKTVITGTKFRFGKDRAG-DRGILQKRGEK 146 (324)
Q Consensus 107 Fi~~iL~~~l~~k~ivVG~Df~FG~~r~G-d~~~L~~~~~~ 146 (324)
|+-+.|....+ +... ..+.+++.|+.
T Consensus 285 F~~~~la~~p~--------------~~~~~~~~~~~~~~~~ 311 (671)
T TIGR00955 285 FYLQVLAVIPG--------------SENERSRETIEKICDA 311 (671)
T ss_pred HHHHHHHCCCC--------------CCHHHHHHHHHHHHHH
T ss_conf 99999731555--------------2003479999999876
No 122
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=35.02 E-value=36 Score=15.39 Aligned_cols=86 Identities=10% Similarity=0.112 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHCCCCCCCC-CCC-HHHHHHC--CC---HHHHHHHHCCCCCEEEEEECCCCCCC--CCC----CCCHH
Q ss_conf 000789999885113100022-564-0577522--83---02688862142780299983455303--377----55602
Q gi|254780846|r 72 LSPPSIQEKILEKMGFSALIR-YKF-TLETANY--SA---EQFIQKVLVEWLEVKTVITGTKFRFG--KDR----AGDRG 138 (324)
Q Consensus 72 l~~~~~k~~~l~~~Gid~vi~-~~F-~~~~a~l--s~---e~Fi~~iL~~~l~~k~ivVG~Df~FG--~~r----~Gd~~ 138 (324)
=.+.++++++.+++|+|.+=. ++- +..++.+ +. ++..+..-...+.+.+++.+...+|- ..- +-..+
T Consensus 15 ~~sw~e~f~~Ak~~Gfd~IE~siDe~d~~~~~l~~~~~~~~~i~~~~~~~gl~I~s~~~s~~~~~pl~s~d~~~r~~~le 94 (284)
T PRK13210 15 DLSWPERLVLAKECGFDFVEMSVDETDERLARLDWSKEERLELVKAIYETGVRIPSMCLSAHRRFPFGSRDEATRERALE 94 (284)
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999999986998899960675422257899989999999999982983566415566689999989899999999
Q ss_pred HHH---HHHHCCCCEEEECCHH
Q ss_conf 467---7510126416761522
Q gi|254780846|r 139 ILQ---KRGEKYGFHTVFIDEL 157 (324)
Q Consensus 139 ~L~---~~~~~~g~~v~~i~~~ 157 (324)
.|+ .++...|+.++.++.+
T Consensus 95 ~l~kaI~lA~~LGi~~I~l~g~ 116 (284)
T PRK13210 95 IMKKAIRLAQDLGIRTIQLAGY 116 (284)
T ss_pred HHHHHHHHHHHCCCCEEEECCC
T ss_conf 9999999999809978996887
No 123
>pfam07148 MalM Maltose operon periplasmic protein precursor (MalM). This family consists of several maltose operon periplasmic protein precursor (MalM) sequences. The function of this family is unknown.
Probab=34.64 E-value=26 Score=16.39 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9799999998744
Q gi|254780846|r 300 EDEKKARKILESS 312 (324)
Q Consensus 300 ~D~~~a~~~l~~~ 312 (324)
.|+.+|-+++++.
T Consensus 247 ~DI~KAL~LldEA 259 (279)
T pfam07148 247 GDIPKALSLLDEA 259 (279)
T ss_pred CCHHHHHHHHHHH
T ss_conf 9999999999999
No 124
>TIGR02456 treS_nterm trehalose synthase; InterPro: IPR012810 Trehalose synthase interconverts maltose and alpha,alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor . More information about this protein can be found at Protein of the Month: alpha-Amylase .; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process.
Probab=33.96 E-value=18 Score=17.35 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHH---CCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 0000789999885113100022564057752---2830268886214278029998345530337755602467751012
Q gi|254780846|r 71 TLSPPSIQEKILEKMGFSALIRYKFTLETAN---YSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKY 147 (324)
Q Consensus 71 ~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~---ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~ 147 (324)
=+.-+..|+.+|+++|||.+-++||=++=-. -.--||- .|| ..++ ---|...|-.-+.+.
T Consensus 26 Df~GLt~KLDYL~~LGVD~LWLlPFf~SPLRDdGYDvsDY~-~il-Pe~G---------------tldDF~~fv~~AH~R 88 (560)
T TIGR02456 26 DFPGLTSKLDYLKELGVDALWLLPFFKSPLRDDGYDVSDYR-AIL-PEYG---------------TLDDFKEFVDEAHAR 88 (560)
T ss_pred CHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHH-CCC-CCCC---------------CHHHHHHHHHHHHHC
T ss_conf 72345211047786232211316777887767882034230-006-7788---------------778999999999757
Q ss_pred CCEEEECCHHHCCC
Q ss_conf 64167615223023
Q gi|254780846|r 148 GFHTVFIDELRNNK 161 (324)
Q Consensus 148 g~~v~~i~~~~~~~ 161 (324)
|+.|++ +-| .|.
T Consensus 89 g~RvI~-dLV-~NH 100 (560)
T TIGR02456 89 GMRVII-DLV-LNH 100 (560)
T ss_pred CCEEEE-ECC-CCC
T ss_conf 988999-637-574
No 125
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=33.88 E-value=30 Score=15.95 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=31.5
Q ss_pred HCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHH
Q ss_conf 228302688862142780299983455303377556024677510126416761522
Q gi|254780846|r 101 NYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDEL 157 (324)
Q Consensus 101 ~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~ 157 (324)
++-|.+|+ ..-+|.|.||-.|.-|+--+.-|+. +|+++++-+.+
T Consensus 10 ~IiPa~~l---------~~Ilvag~NFG~GSSREhA~~al~~----~Gi~~VIa~SF 53 (91)
T cd01577 10 QIIPARFL---------GDIIVAGKNFGCGSSREHAPWALKD----AGIRAVIAESF 53 (91)
T ss_pred CCCHHHHC---------CCEEEECCCCCCCCCHHHHHHHHHH----CCCEEEEEHHH
T ss_conf 27325532---------4689956865778528999999998----49549997239
No 126
>PRK00830 consensus
Probab=33.68 E-value=33 Score=15.64 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 00078999988511310002256405775228302688862142780299983455303
Q gi|254780846|r 72 LSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFG 130 (324)
Q Consensus 72 l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG 130 (324)
+.+.++=.++| +.|+|.+++=. .+--.| +|+++ +.+.++.+.||||-|.+-+
T Consensus 87 Irs~e~~~~ll-~~GadkVvIgS----~a~~np-~~v~~-~~~~fGsq~IvvsiD~k~~ 138 (273)
T PRK00830 87 IRSIEDIRQIL-RAGADKVSVNT----AAVKNP-EFIRE-ASDIFGSQCIVVAIDCKRN 138 (273)
T ss_pred EEECCCHHHHH-HCCCCEEECHH----HHHHCC-HHHHH-HHHHCCCCEEEEEEEEECC
T ss_conf 43773289999-76986398379----898590-77899-9987699059999984337
No 127
>PRK04694 Maf-like protein; Reviewed
Probab=33.35 E-value=22 Score=16.85 Aligned_cols=38 Identities=13% Similarity=0.340 Sum_probs=24.0
Q ss_pred HHHHHHHHHCCCCCC-CCCCCHHH-HHHCCCHHHHHHHHC
Q ss_conf 899998851131000-22564057-752283026888621
Q gi|254780846|r 76 SIQEKILEKMGFSAL-IRYKFTLE-TANYSAEQFIQKVLV 113 (324)
Q Consensus 76 ~~k~~~l~~~Gid~v-i~~~F~~~-~a~ls~e~Fi~~iL~ 113 (324)
..|.++|+++|+++- +..++++. ....+|++++..+-.
T Consensus 9 prR~~lL~~~gi~f~v~~~didE~~~~~~~p~~~v~~lA~ 48 (190)
T PRK04694 9 PRRRELLQRLDVPFQTLQLDVPEVRAADESPDHYVQRVAL 48 (190)
T ss_pred HHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999878998399669998776877798999999999
No 128
>PRK02478 Maf-like protein; Reviewed
Probab=32.95 E-value=38 Score=15.30 Aligned_cols=38 Identities=8% Similarity=0.131 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHCCCCCCC-CCCCHHHH-------HHCCCHHHHHHH
Q ss_conf 078999988511310002-25640577-------522830268886
Q gi|254780846|r 74 PPSIQEKILEKMGFSALI-RYKFTLET-------ANYSAEQFIQKV 111 (324)
Q Consensus 74 ~~~~k~~~l~~~Gid~vi-~~~F~~~~-------a~ls~e~Fi~~i 111 (324)
....|.++|+++|+++-+ ..+||++- ...+|.++...+
T Consensus 10 ~SprR~eLL~~~gi~f~v~~~diDE~~~~~~l~~~~~~p~~~~~~l 55 (199)
T PRK02478 10 KSPFRRALLKNAGLEFSAAAADIDERAVEAPLEESGATPEDVALVL 55 (199)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9999999999789980996379999855455444799999999999
No 129
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=32.80 E-value=29 Score=16.07 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 303689998725899999850000000
Q gi|254780846|r 166 SSSNIRTALTKGHVLNAAHLLGYRFTI 192 (324)
Q Consensus 166 SSt~IR~~l~~Gdi~~an~lLGr~y~i 192 (324)
+.-+||++|..|+++.|-+.+...|.-
T Consensus 4 ~r~~i~~~i~~G~~~~Al~~~~~~~~~ 30 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPP 30 (58)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCHH
T ss_conf 699999999959999999999985989
No 130
>PRK03220 consensus
Probab=32.65 E-value=40 Score=15.15 Aligned_cols=115 Identities=15% Similarity=0.210 Sum_probs=59.8
Q ss_pred CEEECCCCCCCCCCCCCCCEEEEEECCCCCC-HHHHHHHHHHHHHHC-CCC-EEEEEEC----CCHH--HHHC---CCCC
Q ss_conf 9422488521127610188499993156502-899999999999502-797-7999837----9868--9847---8886
Q gi|254780846|r 1 MHVFHNIEINQSLPNHLKGGVVAIGNFDGIH-LGHHLILEQAIKIAN-NSP-ITVLSFN----PHPR--TIIQ---SSSP 68 (324)
Q Consensus 1 Mki~~~~~~~~~~p~~~~~~vvtiG~FDGvH-~GHq~Li~~~~~~a~-~~~-~~viTF~----p~P~--~~~~---~~~~ 68 (324)
|+||..+++.. +-+|---+|++.- .|. -++.+...+. +.. +.++-.+ ..|. .++. .+-.
T Consensus 5 mrIIPaIDi~~-------g~~Vkg~~~~~~~~~gd--P~~~a~~~~~~G~d~lhivDld~a~~g~~~n~~~I~~i~~~~~ 75 (257)
T PRK03220 5 VRVIPCLDVDA-------GRVVKGVNFENLRDAGD--PVELAAVYDAEGADELTFLDVTASSSGRATMLDVVRRTAEQVF 75 (257)
T ss_pred EEEEEEEEEEC-------CEEEECCCCCCCEECCC--HHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 48999999999-------98885777778678889--9999999998699989999088875676307999999985069
Q ss_pred CC-----CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 62-----0000789999885113100022564057752283026888621427802999834553033
Q gi|254780846|r 69 IF-----TLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGK 131 (324)
Q Consensus 69 ~~-----~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~ 131 (324)
.+ -+.+.++=..+| +.|+|.+++=. .+-.+ -+|+++ +.+.++.+.||++-|++.+.
T Consensus 76 ~pi~vGGGIrs~e~~~~ll-~~GadkVvigs----~a~~~-p~~~~~-~~~~fG~q~Iv~siD~k~~~ 136 (257)
T PRK03220 76 IPLTVGGGVRTVEDVDSLL-RAGADKVSVNT----AAIAR-PELLAE-LARRFGSQCIVLSVDARRVP 136 (257)
T ss_pred CCEEEECCCCCHHHHHHHH-HCCCCEEECHH----HHHHC-CHHHHH-HHHHCCCEEEEEEEEEEECC
T ss_conf 6489847858799999999-81975087206----67759-477789-99870986699999988625
No 131
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=32.55 E-value=40 Score=15.14 Aligned_cols=93 Identities=18% Similarity=0.245 Sum_probs=53.1
Q ss_pred HCCCCCEEEEEECCCCCCCC---CCCCCHHHHHHHHHCCCCEEEECCHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21427802999834553033---77556024677510126416761522302--33302303689998725899999850
Q gi|254780846|r 112 LVEWLEVKTVITGTKFRFGK---DRAGDRGILQKRGEKYGFHTVFIDELRNN--KSQIVSSSNIRTALTKGHVLNAAHLL 186 (324)
Q Consensus 112 L~~~l~~k~ivVG~Df~FG~---~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~--~~~~ISSt~IR~~l~~Gdi~~an~lL 186 (324)
+.++.++.-+.+-.=++|-- .+.--..-|..|....|-+..++-|+-+. .+..++-...+++|+ |-+.+
T Consensus 57 ~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~~vr~~~lv~Alk------aLkpi 130 (272)
T COG4130 57 LAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGTAVRREDLVEALK------ALKPI 130 (272)
T ss_pred HHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHH------HHHHH
T ss_conf 999729579996132343313767789999999999854876389975468988775236587999999------85699
Q ss_pred HHCCHHHHHHHHCCCCCCEEEEEEEEEEHHC
Q ss_conf 0000000012210020110111112110000
Q gi|254780846|r 187 GYRFTIESDVIHGEKIGRTLGFPTANMQLSP 217 (324)
Q Consensus 187 Gr~y~i~G~Vv~G~~~Gr~lGfPTaNi~~~~ 217 (324)
--.|-|+|-|.. |||+++-+.-..
T Consensus 131 l~~~gi~GLVEP-------LGF~~csLRsk~ 154 (272)
T COG4130 131 LDEYGITGLVEP-------LGFRVCSLRSKA 154 (272)
T ss_pred HHHHCCCCCCCC-------CCCHHHHHHHHH
T ss_conf 987185420046-------676044455189
No 132
>PRK02747 consensus
Probab=32.23 E-value=35 Score=15.50 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 0007899998851131000225640577522830268886214278029998345530
Q gi|254780846|r 72 LSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRF 129 (324)
Q Consensus 72 l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~F 129 (324)
+.+.++=.++| +.|+|.+++=. +...--+|+++ +.+.++.+.|+++-|++-
T Consensus 83 Irs~e~~~~ll-~~GadkViigs-----~a~~np~l~~~-~~~~fG~q~Iv~siD~k~ 133 (257)
T PRK02747 83 VRTVDDIRKLL-LAGADKVSINS-----AAVARPEFVAE-AADKFGSQCIVVAIDAKR 133 (257)
T ss_pred CCCHHHHHHHH-HCCCCEEEECH-----HHHHCCHHHHH-HHHHCCCEEEEEEEEEEE
T ss_conf 20738878998-76996898344-----46548347777-887559657999998775
No 133
>PRK04554 consensus
Probab=31.75 E-value=41 Score=15.05 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=70.5
Q ss_pred CCCCCCCCCCCCE-EEEEECCCC-CCHHHHHHH--HHHHHHH-CCCCEEEEEECCCHHHHHCCCCCCCC-C--CHHHHHH
Q ss_conf 5211276101884-999931565-028999999--9999950-27977999837986898478886620-0--0078999
Q gi|254780846|r 8 EINQSLPNHLKGG-VVAIGNFDG-IHLGHHLIL--EQAIKIA-NNSPITVLSFNPHPRTIIQSSSPIFT-L--SPPSIQE 79 (324)
Q Consensus 8 ~~~~~~p~~~~~~-vvtiG~FDG-vH~GHq~Li--~~~~~~a-~~~~~~viTF~p~P~~~~~~~~~~~~-l--~~~~~k~ 79 (324)
|..-.++++.++. |+-+-.+-. +.---.+|+ -.+.+.| .+.-.+|+-+-|.-+ +++.... - .+-..=.
T Consensus 42 E~~v~i~esVrg~dV~iiqs~~~~~nd~lmELll~idA~rra~A~~It~ViPY~~YaR----QDr~~~~gr~pIsak~vA 117 (327)
T PRK04554 42 EVAVELLENVRGRDVFILQPTCAPTNDNLMEILTMADALKRASAGRITTAIPYFGYAR----QDRRPRSVRVPISAKLVA 117 (327)
T ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC----CCCCCCCCCCCCCHHHHH
T ss_conf 8887417877898189991799982477999999999998728872799944656433----676657886751299998
Q ss_pred HHHHHCCCCCCCCCCCHH---------HHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCE
Q ss_conf 988511310002256405---------77522830268886214278029998345530337755602467751012641
Q gi|254780846|r 80 KILEKMGFSALIRYKFTL---------ETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFH 150 (324)
Q Consensus 80 ~~l~~~Gid~vi~~~F~~---------~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~ 150 (324)
++|+..|+|.++.++.-. .+.++++...+.+++.++---..++|+.|. |....-+.+++..|..
T Consensus 118 ~lL~~~G~d~vitvDlH~~qiqgfF~ipvd~l~a~~~l~~~i~~~~~~~~vvVsPD~-------G~~~ra~~~A~~L~~~ 190 (327)
T PRK04554 118 NMLYSAGIDRVLTVDLHADQIQGFFDIPVDNIYATPILLNDIKQQRIENLTVVSPDI-------GGVVRARAVAKSLNAD 190 (327)
T ss_pred HHHHHCCCCCCEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCC-------CHHHHHHHHHHHCCCC
T ss_conf 557625988504762684887343689702111219999999860778728983795-------3899999999756887
Q ss_pred EEECCHHH
Q ss_conf 67615223
Q gi|254780846|r 151 TVFIDELR 158 (324)
Q Consensus 151 v~~i~~~~ 158 (324)
..++...+
T Consensus 191 ~a~~~K~R 198 (327)
T PRK04554 191 LAIIDKRR 198 (327)
T ss_pred EEEEEEEC
T ss_conf 79999644
No 134
>pfam01976 DUF116 Protein of unknown function DUF116. This archaebacterial protein has no known function. The protein contains seven conserved cysteines and may also be an integral membrane protein.
Probab=31.32 E-value=42 Score=15.01 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 55602467751012641676152230233302303689998725899
Q gi|254780846|r 134 AGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVL 180 (324)
Q Consensus 134 ~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~Gdi~ 180 (324)
.-++..|.++++++|+++.+++ +||.+|+.+.+...+
T Consensus 72 ~C~I~~l~~la~~~G~~v~i~~----------Ggt~~rkii~~~~p~ 108 (158)
T pfam01976 72 KCDIGDLKELAEEYGYKVYIVP----------GGTFAKKIIKEYRPK 108 (158)
T ss_pred CCCHHHHHHHHHHCCCEEEEEC----------CCHHHHHHHHHCCCC
T ss_conf 9844279999998098799964----------828999999872999
No 135
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=31.17 E-value=36 Score=15.46 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=47.0
Q ss_pred CCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEEC-CCCCCCCCCCCCHHHHHHHHHCCC-----CEEEECCHHHCCC
Q ss_conf 0002256405775228302688862142780299983-455303377556024677510126-----4167615223023
Q gi|254780846|r 88 SALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITG-TKFRFGKDRAGDRGILQKRGEKYG-----FHTVFIDELRNNK 161 (324)
Q Consensus 88 d~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG-~Df~FG~~r~Gd~~~L~~~~~~~g-----~~v~~i~~~~~~~ 161 (324)
|..++.+..+++..= | .||.+-|+++.+||| +|-+ -.=++-|++..+.++ ++|.+++.-+-.+
T Consensus 175 DdrLMrEra~eI~~G-----I-~I~~~~L~~~~~viGIEDNK-----peAI~al~~a~~~~~~Pt~~i~v~vlpTkYPqG 243 (444)
T TIGR01945 175 DDRLMRERAEEIIQG-----I-RILLKILGVKKVVIGIEDNK-----PEAIAALKKALEGYPKPTKNIKVRVLPTKYPQG 243 (444)
T ss_pred CCHHHHCCHHHHHHH-----H-HHHHHHHCCCEEEEEEECCC-----HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
T ss_conf 422333175789999-----9-99999718986999865795-----799999999860278887754788841228986
Q ss_pred CCC
Q ss_conf 330
Q gi|254780846|r 162 SQI 164 (324)
Q Consensus 162 ~~~ 164 (324)
+++
T Consensus 244 gEK 246 (444)
T TIGR01945 244 GEK 246 (444)
T ss_pred HHH
T ss_conf 078
No 136
>TIGR00339 sopT sulfate adenylyltransferase; InterPro: IPR002650 This entry consists of ATP-sulphurylase or sulphate adenylyltransferase (2.7.7.4 from EC0 some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate . ATP sulphurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate .; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation.
Probab=31.03 E-value=32 Score=15.73 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=84.0
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH--CC-CCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHH-HHHHCCC
Q ss_conf 2761018849999315650289999999999950--27-977999837986898478886620000789999-8851131
Q gi|254780846|r 12 SLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIA--NN-SPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK-ILEKMGF 87 (324)
Q Consensus 12 ~~p~~~~~~vvtiG~FDGvH~GHq~Li~~~~~~a--~~-~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~-~l~~~Gi 87 (324)
.+++.--..|||.=.=--+|+||..|.+.|.+.. .. ...+|+- ||-.=..+....+.-+-.+ -.+ .|.+-=+
T Consensus 205 ~~~~~~w~~VvAFQtRNP~HraH~~L~~~A~~~~~~~~~~~~~~L~---Hp~~G~tK~gDiP~~~R~~-~y~~vl~~~y~ 280 (424)
T TIGR00339 205 EFKERGWDKVVAFQTRNPMHRAHEELTKRAAERLLELIEPNAGVLV---HPLVGLTKPGDIPAEVRMR-AYEAVLKEGYY 280 (424)
T ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE---ECCCCCCCCCCCCHHHHHH-HHHHHHHCCCC
T ss_conf 9864373326644058862167899999899887652015894788---1555788888886689999-99998742688
Q ss_pred C----CCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCC-CCCCCCC----CH------H-HHHHHH--HCCCC
Q ss_conf 0----0022564057752283026888621427802999834553-0337755----60------2-467751--01264
Q gi|254780846|r 88 S----ALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFR-FGKDRAG----DR------G-ILQKRG--EKYGF 149 (324)
Q Consensus 88 d----~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~-FG~~r~G----d~------~-~L~~~~--~~~g~ 149 (324)
+ .|=.++++..+|.=. |.-..-++-+.+++.+.+||-|.. .|++-+| |+ + .++++- .+.|+
T Consensus 281 ~p~~~~~~~~p~~MryaGPr-EA~~Ha~iR~N~GaTHFIvGRDhAg~g~~~~gyat~d~Y~~y~aq~~~~~~~~e~e~~~ 359 (424)
T TIGR00339 281 NPERVMLTFLPLAMRYAGPR-EAIWHAIIRKNYGATHFIVGRDHAGVGKNSKGYATQDFYGPYDAQELFEKYKNEAELGI 359 (424)
T ss_pred CCCEEEEEEECCCCCCCCCH-HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEECCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf 98758998516642125758-99988999861798566652668888888656242147888851366414787530166
Q ss_pred EEEEC--CHHHCC-----------------CCCCCCHHHHHHHHHHHH
Q ss_conf 16761--522302-----------------333023036899987258
Q gi|254780846|r 150 HTVFI--DELRNN-----------------KSQIVSSSNIRTALTKGH 178 (324)
Q Consensus 150 ~v~~i--~~~~~~-----------------~~~~ISSt~IR~~l~~Gd 178 (324)
+++.- ..+... .-..+|=|.+|.++++|.
T Consensus 360 ~~~~~nm~~~~Y~~~~~~~~~~~~~~~~~~~~~~~SGt~~R~~l~~g~ 407 (424)
T TIGR00339 360 KIVPFNMEEVAYCPEEDEYATADQAKHTNLKTLNISGTKLREMLREGV 407 (424)
T ss_pred EECHHHHHHHCCCCCCCCEEEHHCCCCCCCCEEEECHHHHHHHHHCCC
T ss_conf 201312334303643577410101664211155321168999985157
No 137
>PRK00234 Maf-like protein; Reviewed
Probab=30.85 E-value=36 Score=15.43 Aligned_cols=37 Identities=11% Similarity=0.253 Sum_probs=24.8
Q ss_pred HHHHHHHHHHCCCCCCCC-CCCHHHH-HHCCCHHHHHHH
Q ss_conf 789999885113100022-5640577-522830268886
Q gi|254780846|r 75 PSIQEKILEKMGFSALIR-YKFTLET-ANYSAEQFIQKV 111 (324)
Q Consensus 75 ~~~k~~~l~~~Gid~vi~-~~F~~~~-a~ls~e~Fi~~i 111 (324)
-..|.++|+++|+++-+. .++|++. ...+|++++..+
T Consensus 10 SprR~~lL~~~gi~f~v~~~~idE~~~~~~~p~~~~~~l 48 (192)
T PRK00234 10 SPYRRELLARLRLPFTCASPDIDESHRPDESAEELVRRL 48 (192)
T ss_pred CHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999999779994997899988889998999999999
No 138
>pfam06898 YqfD Putative stage IV sporulation protein YqfD. This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis is known to be essential for efficient sporulation although its exact function is unknown.
Probab=30.76 E-value=43 Score=14.95 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=7.0
Q ss_pred HHHHHHHHHCCCCCC
Q ss_conf 899998851131000
Q gi|254780846|r 76 SIQEKILEKMGFSAL 90 (324)
Q Consensus 76 ~~k~~~l~~~Gid~v 90 (324)
++=.+.|++.|+..-
T Consensus 122 ~~i~~~L~~~gi~~G 136 (383)
T pfam06898 122 HEIRQQLNEIGVKSG 136 (383)
T ss_pred HHHHHHHHHCCCCCC
T ss_conf 999999998699778
No 139
>pfam07668 MpPF1 M penetrans paralogue family 1. This family of paralogous proteins identified in Mycoplasma penetrans includes homologues of p35.
Probab=30.56 E-value=43 Score=14.92 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=10.1
Q ss_pred EEEHHCCCC-CCHHHHEEEEE
Q ss_conf 110000222-31011000247
Q gi|254780846|r 212 NMQLSPDIL-LKEGVYAIRFR 231 (324)
Q Consensus 212 Ni~~~~~~~-p~~GVY~~~v~ 231 (324)
+..++++.+ -+-|||=|...
T Consensus 299 ~~tLdndkis~aLGiYN~~Fs 319 (372)
T pfam07668 299 GTTLDNDKISAALGIYNCKFS 319 (372)
T ss_pred CCCCCHHHHHHHHCEEEEEEE
T ss_conf 741488899886356557864
No 140
>pfam09551 Spore_II_R Stage II sporulation protein R (spore_II_R). SpoIIR is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation.
Probab=30.54 E-value=22 Score=16.79 Aligned_cols=50 Identities=28% Similarity=0.560 Sum_probs=29.7
Q ss_pred HHHHHCCHHHHHHHHCCCCCCEEEEEEEEEEHHCCCCCCHHHH-EEEEEEEE--CCCCCHHCC
Q ss_conf 8500000000012210020110111112110000222310110-00247630--565621105
Q gi|254780846|r 184 HLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVY-AIRFRTQD--QTSYSGVAN 243 (324)
Q Consensus 184 ~lLGr~y~i~G~Vv~G~~~Gr~lGfPTaNi~~~~~~~p~~GVY-~~~v~~~~--~~~~~~v~n 243 (324)
+--|++|..+-.+ |+ .-||| +.-..+..|-|.| |.++.+.+ |.-|++|++
T Consensus 67 ~~~G~~y~v~v~~------~~-~~FPt---K~YG~~~~PaG~YeAlrI~IG~g~G~NWWCVlf 119 (132)
T pfam09551 67 KEEGYDYPVKVEL------GK-FSFPT---KLYGNITLPAGEYEALRITIGEGEGANWWCVLF 119 (132)
T ss_pred HHHCCCCCEEEEE------EE-EECCC---CCCCCEECCCCCEEEEEEEECCCCCCCEEEEEC
T ss_conf 9858998669999------87-75898---642777514874689999942757762689952
No 141
>PRK03098 consensus
Probab=29.93 E-value=32 Score=15.79 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=25.4
Q ss_pred HHHHHHHHHCCCCCCC-CCCCHHHH-HHCCCHHHHHHH
Q ss_conf 8999988511310002-25640577-522830268886
Q gi|254780846|r 76 SIQEKILEKMGFSALI-RYKFTLET-ANYSAEQFIQKV 111 (324)
Q Consensus 76 ~~k~~~l~~~Gid~vi-~~~F~~~~-a~ls~e~Fi~~i 111 (324)
..|.++|+++|+++-+ ..+||++. ...+|.+++..+
T Consensus 7 ~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~p~~~~~~l 44 (185)
T PRK03098 7 PRRKELLELAGVPFEIIVSEVEETIGAYSSPSEIVQSL 44 (185)
T ss_pred HHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999998689995997799999999996999999999
No 142
>PRK05211 consensus
Probab=29.75 E-value=18 Score=17.33 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 000789999885113100022564057752283026888621427802999834553033
Q gi|254780846|r 72 LSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGK 131 (324)
Q Consensus 72 l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~ 131 (324)
+.+.++=.++| +.|+|.+++=. . ...--+|+++ +.+.++.+.||+|-|.++++
T Consensus 74 Irs~~~i~~ll-~~GadkViigs----~-a~~np~li~~-~~~~fG~q~IvvsiD~~~~~ 126 (248)
T PRK05211 74 IKSVEDAREIL-SFGADKISINS----P-ALADPTLITR-LADRFGVQCIVVGIDSWFDA 126 (248)
T ss_pred CCCHHHHHHHH-HCCCCEEEECC----H-HHHCCHHHHH-HHHHCCCCEEEEEEEEECCC
T ss_conf 01389999999-87998899897----6-7619618999-99857993699999710255
No 143
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=29.69 E-value=44 Score=14.83 Aligned_cols=56 Identities=16% Similarity=0.104 Sum_probs=37.4
Q ss_pred HHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHH
Q ss_conf 862142780299983455303377556024677510126416761522302333023036
Q gi|254780846|r 110 KVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSN 169 (324)
Q Consensus 110 ~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~ 169 (324)
.++.++.+.|..+++.|+-||+. ..+..+++.++.|.+++.-..+.. +..-.||..
T Consensus 126 ~~~~~~~gkkv~~i~~dy~~g~~---~~~~~~~~~~~~G~eVv~e~~~p~-g~~Dfs~~l 181 (374)
T TIGR03669 126 PYMVEEYGKKIYTIAADYNFGQL---SADWVRVIAKENGAEVVGEEFIPL-SVSQFSSTI 181 (374)
T ss_pred HHHHHHCCCCEEEEECCCCCCHH---HHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHH
T ss_conf 99998449948999636641478---999999999866988999996689-996689999
No 144
>TIGR00492 alr alanine racemase; InterPro: IPR000821 Alanine racemase catalyses the pyridoxal-dependent conversion of L-alanine into D-alanine, a key component of bacterial peptidoglycan . In Escherichia coli and Salmonella typhimurium, there are two alanine racemase isoforms, alr is a biosynthetic form required for cell wall formation; and dadB functions in L-alanine catabolism. By contrast with dadB and alr, both of which are monomeric enzymes, the alanine racemase of Bacillaceae are homodimers. In Pseudomonas putida, a broad-specificity amino acid racemase is structurally and functionally related to alanine racemase. The 3D-structure of the dimeric alanine racemase from Bacillus stearothermophilus has been determined to a resolution of 1.9 A . Each monomer comprises two domains, with an eight-stranded alpha/beta barrel at the N-terminus, and a C-terminal beta-strand domain. In the dimer, the mouth of the alpha/beta barrel of one monomer faces the second domain of the other monomer. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the barrel mouth and is covalently linked via an aldimine linkage to Lys39. Several other residues are involved in anchoring the PLP, for example, Arg219 forms a hydrogen bond with the pyridine nitrogen of the cofactor, which is assumed to influence electron delocalisation in PLP-alanine intermediates; Arg136 donates a hydrogen bond to the phenolic oxygen of PLP, and may be involved in substrate binding and stabilisation of intermediates; and Tyr265' is postulated to be a 2 proton donor to the carbanion intermediate .; GO: 0008784 alanine racemase activity, 0006522 alanine metabolic process.
Probab=29.34 E-value=26 Score=16.35 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=6.0
Q ss_pred HHCCCCCCEEEEEEEE
Q ss_conf 2100201101111121
Q gi|254780846|r 197 IHGEKIGRTLGFPTAN 212 (324)
Q Consensus 197 v~G~~~Gr~lGfPTaN 212 (324)
+|=..=|-.|-||-.+
T Consensus 204 ~h~aNSaaiL~~~~~~ 219 (383)
T TIGR00492 204 RHIANSAAILSLPEGH 219 (383)
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 5421017864453356
No 145
>PRK11792 queF 7-cyano-7-deazaguanine reductase; Provisional
Probab=29.07 E-value=46 Score=14.76 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=11.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0887468989999999997999
Q gi|254780846|r 283 RPEIKFKDIEKLKIYMGEDEKK 304 (324)
Q Consensus 283 R~e~kF~s~~~L~~qI~~D~~~ 304 (324)
|+..-|- |+-.++|-.|+..
T Consensus 214 R~h~~FH--E~CvE~If~dl~~ 233 (274)
T PRK11792 214 RQHNEFH--EQCVERIFTDIMR 233 (274)
T ss_pred HCCCCCH--HHHHHHHHHHHHH
T ss_conf 2146408--9999999999997
No 146
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=28.29 E-value=27 Score=16.21 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHH----HHHHHHHHHCCH-HHHHHHHCCCCCCEEEEEEEE
Q ss_conf 30368999872589----999985000000-000122100201101111121
Q gi|254780846|r 166 SSSNIRTALTKGHV----LNAAHLLGYRFT-IESDVIHGEKIGRTLGFPTAN 212 (324)
Q Consensus 166 SSt~IR~~l~~Gdi----~~an~lLGr~y~-i~G~Vv~G~~~Gr~lGfPTaN 212 (324)
-+.-++++|..|.. ...-+|||+.|. -+|..+.|-++ |++-|.|
T Consensus 76 k~~~l~~~i~~g~p~laiCgg~QlLG~yY~~a~G~ri~GlGi---Ld~~T~~ 124 (250)
T COG3442 76 KKEGLKDAIENGKPVLAICGGYQLLGQYYETASGTRIDGLGI---LDHYTEN 124 (250)
T ss_pred CCHHHHHHHHCCCCEEEECCCHHHCCCEEECCCCCEEECCCC---EEEEECC
T ss_conf 037799998669958998255533040321689847613221---1234126
No 147
>pfam01232 Mannitol_dh Mannitol dehydrogenase Rossmann domain.
Probab=27.98 E-value=48 Score=14.64 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=22.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 9931565028999999999995027977999837986898
Q gi|254780846|r 23 AIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTI 62 (324)
Q Consensus 23 tiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~ 62 (324)
=.|+ +|+|||+.+..+.+.+ +...+++-..+.|...
T Consensus 7 G~Gn---F~Rah~a~~~~ll~~~-~~~wgi~~v~~r~~~~ 42 (151)
T pfam01232 7 GAGN---FHRAHQAFIGDLLAEN-GFDWGIVDVNLRVVDA 42 (151)
T ss_pred CCCH---HHHHHHHHHHHHHHCC-CCCEEEEEECCCCHHH
T ss_conf 3749---9889999999999603-8981599725798789
No 148
>PRK04719 consensus
Probab=27.39 E-value=30 Score=15.94 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHCCCCCC-CCCCCHHH-HHHCCCHHHHHHH
Q ss_conf 007899998851131000-22564057-7522830268886
Q gi|254780846|r 73 SPPSIQEKILEKMGFSAL-IRYKFTLE-TANYSAEQFIQKV 111 (324)
Q Consensus 73 ~~~~~k~~~l~~~Gid~v-i~~~F~~~-~a~ls~e~Fi~~i 111 (324)
+....|.++|+++|+++- +..++|+. ....+|.+++..+
T Consensus 10 S~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~p~~~v~~l 50 (188)
T PRK04719 10 SGSPRRKELLAQLGYQFDVVLPDVEECKQEHETAAQYVLRL 50 (188)
T ss_pred CCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 79999999998779995897899997878888999999999
No 149
>pfam03851 UvdE UV-endonuclease UvdE.
Probab=27.30 E-value=49 Score=14.56 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=39.8
Q ss_pred HHHHHHHHCCCCEEEEEECCCHHHHHCCCCCC---CCCCHHHHHHHHHHHCCCC----CCCCCCCHHHH--HHCCCHHHH
Q ss_conf 99999950279779998379868984788866---2000078999988511310----00225640577--522830268
Q gi|254780846|r 38 LEQAIKIANNSPITVLSFNPHPRTIIQSSSPI---FTLSPPSIQEKILEKMGFS----ALIRYKFTLET--ANYSAEQFI 108 (324)
Q Consensus 38 i~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~---~~l~~~~~k~~~l~~~Gid----~vi~~~F~~~~--a~ls~e~Fi 108 (324)
++.+-+.|+..+.- +||-|-+-.++.+..+. ..+..++.--++|..+|++ ..+.+.-.-.. ..-+.+.|+
T Consensus 88 l~~iG~~a~~~~~R-ls~HPgqf~vL~S~~~~Vv~~si~dL~~Ha~~ld~mgl~~~~~~~inIH~gg~ygdk~~~~~Rf~ 166 (275)
T pfam03851 88 LREAGELAKEHGHR-LTFHPGQFTVLNSPRPEVTESAIRDMAYHYRLLDGMGLAERPDAVLIIHVGGAFGGKEATLERFH 166 (275)
T ss_pred HHHHHHHHHHCCCE-EEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 99999999982955-87489972216999889999999998669999998089976673478732676698889999999
Q ss_pred HHH--HCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 886--21427802999834553033775560246775101264167
Q gi|254780846|r 109 QKV--LVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTV 152 (324)
Q Consensus 109 ~~i--L~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~ 152 (324)
+++ |.+..+ +.+|+-.|= +..++++|-.+|++.|+.++
T Consensus 167 ~n~~~L~~~vk-~rLvlENDD-----k~ysv~dll~i~~~~~iPiv 206 (275)
T pfam03851 167 ENIARLPDSVK-LRLVLENDD-----KSYTVAELLPICEKLNIPLV 206 (275)
T ss_pred HHHHHCCHHHC-CEEEEECCC-----CCCCHHHHHHHHHHHCCCEE
T ss_conf 99976799471-267995588-----75779999999997399889
No 150
>PRK04281 consensus
Probab=27.19 E-value=47 Score=14.69 Aligned_cols=52 Identities=6% Similarity=0.119 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 00078999988511310002256405775228302688862142780299983455303
Q gi|254780846|r 72 LSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFG 130 (324)
Q Consensus 72 l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG 130 (324)
+.+.++=.++| +.|+|.+++=.- ...-.+|+++ +.+.++.+.|+++-|++.+
T Consensus 83 Irs~e~~~~ll-~~GadkViigs~-----a~~np~~l~~-~~~~fG~q~Iv~siD~k~~ 134 (254)
T PRK04281 83 VRTVADIRRLL-NAGADKVSINTA-----AVTRPDLIDE-AAGFFGSQAIVAAVDAKAV 134 (254)
T ss_pred EEECHHHHHHH-HCCCCEEEECHH-----HHHCCHHHHH-HHHHCCCEEEEEEEEEEEE
T ss_conf 54518899999-769988997776-----7649267676-7875598217999988850
No 151
>COG3885 Uncharacterized conserved protein [Function unknown]
Probab=26.90 E-value=43 Score=14.95 Aligned_cols=104 Identities=18% Similarity=0.184 Sum_probs=43.2
Q ss_pred EE-CCCCCCHH-------HHHHHHHHHHHHCCC-CEEEEEEC----CCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 93-15650289-------999999999950279-77999837----9868984788866200007899998851131000
Q gi|254780846|r 24 IG-NFDGIHLG-------HHLILEQAIKIANNS-PITVLSFN----PHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSAL 90 (324)
Q Consensus 24 iG-~FDGvH~G-------Hq~Li~~~~~~a~~~-~~~viTF~----p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~v 90 (324)
.| .||+.|-- -+.|-.+..+.|++. +++.+||. ..|+.++.+..-.++-.-.+.|+.++-..-++..
T Consensus 65 ~g~~~~~k~~~i~~ey~~dreLa~~I~~~a~g~~p~v~it~~~lkg~~s~~~Ld~G~~IPL~Flk~rrIV~lt~arl~~~ 144 (261)
T COG3885 65 SGLPYRTKHHPIRKEYKNDRELADKIYEEAKGQFPLVCITFSILKGNYSRCPLDWGSLIPLYFLKRRRIVLLTPARLSRE 144 (261)
T ss_pred CCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCCCCCCHHHCCCEEEEEECHHHCCHH
T ss_conf 36645665675014332008899999998436775688750333376776403345420220301024898441001589
Q ss_pred CCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 2256405775228302688862142780299983455303377556
Q gi|254780846|r 91 IRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGD 136 (324)
Q Consensus 91 i~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd 136 (324)
.+..|-. ++.+++.+.-+--.+++..|..--++-.|-
T Consensus 145 ~l~~Fg~---------~l~~~le~~~~ki~lIiSaD~aHth~edGP 181 (261)
T COG3885 145 ILVKFGD---------NLGKALEEYERKISLIISADHAHTHDEDGP 181 (261)
T ss_pred HHHHHHH---------HHHHHHHHHHCCEEEEEECCCCCCCCCCCC
T ss_conf 9999999---------999999985253689995451134589999
No 152
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=26.65 E-value=50 Score=14.49 Aligned_cols=37 Identities=14% Similarity=0.287 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCCCCCC-CCCHHH-HHHCCCHHHHHHH
Q ss_conf 789999885113100022-564057-7522830268886
Q gi|254780846|r 75 PSIQEKILEKMGFSALIR-YKFTLE-TANYSAEQFIQKV 111 (324)
Q Consensus 75 ~~~k~~~l~~~Gid~vi~-~~F~~~-~a~ls~e~Fi~~i 111 (324)
-..|.++|+++|+++.+. .+||++ +...+|.+.+..+
T Consensus 7 S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~p~~~~~~l 45 (180)
T cd00555 7 SPRRRELLEQLGIPFEVVPSDIDETPIKGESPEDYVLRL 45 (180)
T ss_pred CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999999779984997899998988899999999999
No 153
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=26.55 E-value=50 Score=14.48 Aligned_cols=52 Identities=10% Similarity=0.148 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 00078999988511310002256405775228302688862142780299983455303
Q gi|254780846|r 72 LSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFG 130 (324)
Q Consensus 72 l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG 130 (324)
+.+.++=.++| +.|+|.+++=.. .+.--+|+++ +.+.++.+.|+++-|++-+
T Consensus 83 Irs~e~~~~ll-~~GadkViigs~-----a~~~p~~~~~-~~~~~G~q~ivvsiD~k~~ 134 (232)
T TIGR03572 83 IRSLEDAKKLL-SLGADKVSINTA-----ALENPDLIEE-AARRFGSQCVVVSIDVKKE 134 (232)
T ss_pred EEEHHHHHHHH-HCCCCEEEECHH-----HHHCCHHHHH-HHHHCCCCCEEEEEEEECC
T ss_conf 30389999999-769968993454-----5219357789-9998699458999998416
No 154
>pfam02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I.
Probab=26.55 E-value=43 Score=14.95 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=35.7
Q ss_pred HHCCCCCCCCC-CCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 51131000225-6405775228302688862142780299983455303377556024677510126416761
Q gi|254780846|r 83 EKMGFSALIRY-KFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFI 154 (324)
Q Consensus 83 ~~~Gid~vi~~-~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i 154 (324)
...|+-..+-. ++|++++..-+..|.. ++.+..+-+.|+||.|-|+....- .+.+..-....|++|..+
T Consensus 5 gt~GiRG~~~~~~lt~~~~~~i~~a~~~-~l~~~~~~~~I~ig~D~R~ss~~~--~~~~~~gl~~~G~~v~~~ 74 (138)
T pfam02878 5 GTSGIRGKVGVGELTPEFALKLGQAIAS-YLRAKAGGGKVVVGRDTRYSSREL--ARALAAGLAANGVEVILL 74 (138)
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHH-HHHHCCCCCEEEEEECCCHHHHHH--HHHHHHHHHHCCCEEEEC
T ss_conf 8999612648998899999999999999-998648999799997996779999--999999704419789635
No 155
>KOG3423 consensus
Probab=26.33 E-value=40 Score=15.12 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=60.8
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCC---CEEE-EEECCCCCCCCCCCC
Q ss_conf 898478886620000789999885113100022564057752283026888621427---8029-998345530337755
Q gi|254780846|r 60 RTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWL---EVKT-VITGTKFRFGKDRAG 135 (324)
Q Consensus 60 ~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l---~~k~-ivVG~Df~FG~~r~G 135 (324)
.+|+..-.....+-+..--..+|+..|++..= ... +.+-.+.++.||.+|..+.+ +++. --+|.|=+++++|+-
T Consensus 74 ~efl~qLddYtP~IPDavt~~yL~~aGf~~~D-~rv-~RLvsLaAQKfvSDIa~DA~Q~~k~r~~~~~~~~k~~~kdkK~ 151 (176)
T KOG3423 74 EEFLAQLDDYTPTIPDAVTDHYLKKAGFQTSD-PRV-KRLVSLAAQKFVSDIANDALQHSKIRTKTAIGKDKKQAKDKKY 151 (176)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCC-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
T ss_conf 99999873079988389999999855877676-879-9999999999999999999998662366666655444566642
Q ss_pred --CHHHHHHHHHCCCCEEEE
Q ss_conf --602467751012641676
Q gi|254780846|r 136 --DRGILQKRGEKYGFHTVF 153 (324)
Q Consensus 136 --d~~~L~~~~~~~g~~v~~ 153 (324)
.+++|..--++||+.+..
T Consensus 152 tLtmeDL~~AL~EyGinv~r 171 (176)
T KOG3423 152 TLTMEDLSPALAEYGINVKR 171 (176)
T ss_pred EEEHHHHHHHHHHHCCCCCC
T ss_conf 55498879999985745678
No 156
>PRK00148 Maf-like protein; Reviewed
Probab=26.14 E-value=48 Score=14.63 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHCCCCCCC-CCCCHHHH-HHCCCHHHHHHH
Q ss_conf 078999988511310002-25640577-522830268886
Q gi|254780846|r 74 PPSIQEKILEKMGFSALI-RYKFTLET-ANYSAEQFIQKV 111 (324)
Q Consensus 74 ~~~~k~~~l~~~Gid~vi-~~~F~~~~-a~ls~e~Fi~~i 111 (324)
+...|.++|+++|+++.+ ..+||+.. ...+|++++..+
T Consensus 9 ~Sp~R~~lL~~~g~~f~v~~~~idE~~~~~~~p~~~v~~l 48 (195)
T PRK00148 9 ASPARLKLLRLAGIPPLVVVSHVDEDAIAASLPSELVQAL 48 (195)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 9999999999779984997899898988778999999999
No 157
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=25.94 E-value=38 Score=15.28 Aligned_cols=17 Identities=41% Similarity=0.741 Sum_probs=8.8
Q ss_pred CCEEEEEECCCCCCHHHH
Q ss_conf 884999931565028999
Q gi|254780846|r 18 KGGVVAIGNFDGIHLGHH 35 (324)
Q Consensus 18 ~~~vvtiG~FDGvH~GHq 35 (324)
+++.|+||. |.=+.+.+
T Consensus 36 ~~~~VvVg~-D~R~~s~~ 52 (445)
T cd05803 36 KGGKIVVGR-DGRPSGPM 52 (445)
T ss_pred CCCEEEEEE-CCCCCHHH
T ss_conf 998499996-99866899
No 158
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=25.89 E-value=52 Score=14.40 Aligned_cols=67 Identities=22% Similarity=0.377 Sum_probs=41.5
Q ss_pred EEEEEECCCHHH--HHCCCCCCCCCCH--HHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEEC
Q ss_conf 799983798689--8478886620000--78999988511310002256405775228302688862142780299983
Q gi|254780846|r 50 ITVLSFNPHPRT--IIQSSSPIFTLSP--PSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITG 124 (324)
Q Consensus 50 ~~viTF~p~P~~--~~~~~~~~~~l~~--~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG 124 (324)
.-|.-||-||.. .|.-..|.+.|.. +..|.++|+.|||++=+-.+-=++ ++ ++++| +.+-+-.|=||
T Consensus 167 V~v~VfDRhP~iGGLLtFGIPsFKLdK~V~~~Rr~if~~MGi~F~Ln~EvGrD---~~----l~~LL-e~YDAVFlGvG 237 (480)
T TIGR01318 167 VQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFKLNTEVGRD---IS----LDDLL-EDYDAVFLGVG 237 (480)
T ss_pred CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEECC---CC----HHHHH-HHCCEEEEECC
T ss_conf 55999747703076013688851102789999999997589278658165032---55----54443-11484896114
No 159
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=25.71 E-value=45 Score=14.79 Aligned_cols=20 Identities=30% Similarity=0.267 Sum_probs=10.4
Q ss_pred HHHHHH-HHHHHHHHHHHHCC
Q ss_conf 999999-97999999987448
Q gi|254780846|r 294 LKIYMG-EDEKKARKILESSY 313 (324)
Q Consensus 294 L~~qI~-~D~~~a~~~l~~~~ 313 (324)
.++.++ .|+.+|-+++++..
T Consensus 264 I~~AVk~~DI~KAL~LldEAe 284 (303)
T PRK10564 264 IKDAVKKGDVDKALKLLNEAE 284 (303)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
T ss_conf 999997599999999999999
No 160
>PRK07218 replication factor A; Provisional
Probab=25.29 E-value=32 Score=15.74 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=4.8
Q ss_pred HHHCCHHHHHHHH
Q ss_conf 0000000001221
Q gi|254780846|r 186 LGYRFTIESDVIH 198 (324)
Q Consensus 186 LGr~y~i~G~Vv~ 198 (324)
.|..|.|.+-+|.
T Consensus 230 ~G~~~ri~~a~V~ 242 (430)
T PRK07218 230 IGSSIRIEDAYVR 242 (430)
T ss_pred CCCEEEEEEEEEE
T ss_conf 8867999558985
No 161
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=25.23 E-value=46 Score=14.73 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=24.9
Q ss_pred ECCCCCHHCCCCCCCCCCCCCCEEEEEEEECCCC-------CCCCCEEEEEEE
Q ss_conf 0565621105789972677971499999406785-------518988999946
Q gi|254780846|r 234 DQTSYSGVANFGRNPTMVPNGPLLLESFIFDFSQ-------EIYGQRCTVSFF 279 (324)
Q Consensus 234 ~~~~~~~v~niG~~PT~~~~~~~~iE~hildf~~-------dlYg~~i~v~f~ 279 (324)
|...+..++--|.+ .++-++++||=-|.+|.+ |.+|-.|.|+=+
T Consensus 183 n~eEL~~~~~~aL~--~SpI~qvL~EkSl~GWKE~EYEVmRD~~dNCItVCNm 233 (1089)
T TIGR01369 183 NEEELKEIVERALS--ASPINQVLVEKSLAGWKEIEYEVMRDSKDNCITVCNM 233 (1089)
T ss_pred CHHHHHHHHHHHHH--HCCCCEEEEEEECCCCEEEEEEEEEECCCCEEEEECC
T ss_conf 77899999998863--0888557501100331788988986268788999745
No 162
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein; InterPro: IPR011863 This protein is has been characterised as both a phosphoserine phosphatase and a phosphoserine:homoserine phosphotransferase . In Pseudomonas aeruginosa, where the characterization was done, a second phosphoserine phosphatase (SerB) and a second homoserine kinase (thrB) are found, but in Fibrobacter succinogenes neither are present. .
Probab=25.20 E-value=20 Score=17.04 Aligned_cols=99 Identities=22% Similarity=0.224 Sum_probs=57.6
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHCC----CHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCE
Q ss_conf 78999988511310002256405775228----30268886214278029998345530337755602467751012641
Q gi|254780846|r 75 PSIQEKILEKMGFSALIRYKFTLETANYS----AEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFH 150 (324)
Q Consensus 75 ~~~k~~~l~~~Gid~vi~~~F~~~~a~ls----~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~ 150 (324)
..+|+++|++-|+.--=+. +-+|+|. |.+|+.. |-+ .+..|+...-| .++=.-+.++.||.
T Consensus 43 MK~R~~IL~~~~~KL~DIQ---~VIA~L~~L~GA~~F~D~-LR~--~~QV~ILSDTF---------~EF~~P~M~~LGFP 107 (203)
T TIGR02137 43 MKQRLKILDRENLKLSDIQ---EVIATLKLLDGAVDFVDT-LRD--RAQVVILSDTF---------YEFAYPLMKNLGFP 107 (203)
T ss_pred HHHHHHHHHHCCCCHHHHH---HHHHHCCCCCHHHHHHHH-HHH--HCCEEEEECCC---------HHHHHHHHHHCCCC
T ss_conf 5556655421587124568---887615632026899886-654--12067870330---------45435888745885
Q ss_pred EEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67615223023330230368999872589999985000
Q gi|254780846|r 151 TVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGY 188 (324)
Q Consensus 151 v~~i~~~~~~~~~~ISSt~IR~~l~~Gdi~~an~lLGr 188 (324)
+..+..+..+++..|.-=.+|..=.+-..-.+-+-|-+
T Consensus 108 T~lCH~L~~~~sD~~~GY~LR~~D~K~~~V~~l~~L~y 145 (203)
T TIGR02137 108 TLLCHKLVVDDSDRVKGYQLRQKDQKRKVVKALKELYY 145 (203)
T ss_pred EEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 03310035528870431221466733689998874030
No 163
>pfam00875 DNA_photolyase DNA photolyase. This domain binds a light harvesting cofactor.
Probab=25.17 E-value=53 Score=14.31 Aligned_cols=107 Identities=15% Similarity=0.244 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHCCCC-EEEEEECCCHHHHHCCC----CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHH
Q ss_conf 9999999999502797-79998379868984788----866200007899998851131000225640577522830268
Q gi|254780846|r 34 HHLILEQAIKIANNSP-ITVLSFNPHPRTIIQSS----SPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFI 108 (324)
Q Consensus 34 Hq~Li~~~~~~a~~~~-~~viTF~p~P~~~~~~~----~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi 108 (324)
|.+|... .+ .+.+ ..|+.|+|. ..-... ...+++.++.+=.+-|+++|+.-.+... ++.+-+
T Consensus 14 N~aL~~A-~~--~~~~v~~vfi~dp~--~~~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l 80 (164)
T pfam00875 14 NPALAAA-AA--SGAPVIPVFILDPA--QLGSHKLGAARRWFLLESLADLDESLAKLGIPLIVRRG--------DPAEVL 80 (164)
T ss_pred HHHHHHH-HH--CCCCEEEEEEEEHH--HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCC--------CHHHHH
T ss_conf 8999999-97--29978999997267--72478878899999999999999999966886310589--------858999
Q ss_pred HHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCH
Q ss_conf 886214278029998345530337755602467751012641676152
Q gi|254780846|r 109 QKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDE 156 (324)
Q Consensus 109 ~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~ 156 (324)
.+ |.+..++..|+.-.++..-..+ --+.+++.+++.|+.+.....
T Consensus 81 ~~-l~~~~~i~~v~~n~~~~~~~~~--rd~~v~~~l~~~~i~~~~~~~ 125 (164)
T pfam00875 81 PE-LAKELGASAVYWNRDYEPYERR--RDAAVKEALREAGIEVHSFDD 125 (164)
T ss_pred HH-HHHHCCCCEEEEECCCCHHHHH--HHHHHHHHHHHCCCEEEEECC
T ss_conf 99-9996799999991678989999--999999999854746999789
No 164
>pfam04481 DUF561 Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=25.13 E-value=53 Score=14.31 Aligned_cols=121 Identities=12% Similarity=0.103 Sum_probs=64.5
Q ss_pred HHHCCCHHHHHHHHCCCCCEEEEEEC-CCCCCCCCCCCCHHHHHHHHHCCC-------CEEEECCH--------------
Q ss_conf 75228302688862142780299983-455303377556024677510126-------41676152--------------
Q gi|254780846|r 99 TANYSAEQFIQKVLVEWLEVKTVITG-TKFRFGKDRAGDRGILQKRGEKYG-------FHTVFIDE-------------- 156 (324)
Q Consensus 99 ~a~ls~e~Fi~~iL~~~l~~k~ivVG-~Df~FG~~r~Gd~~~L~~~~~~~g-------~~v~~i~~-------------- 156 (324)
.+..+|+.|..-+ +-++.-|=+| +|--+-.+|.-+.+..-++.++.. ..| .||.
T Consensus 66 VSaVep~~f~~aV---~AGA~lvEIGNfDsFY~qGr~f~a~eVL~Lt~~Tr~LLP~~~LsV-TVPHiL~ld~Qv~LA~~L 141 (243)
T pfam04481 66 VSAVEPELLYEAV---LAGADLVEIGNFDSFYKQGRVLSVCEIIALVKETRKLLPHTPLCV-TIPHILKLKEQINLAKQL 141 (243)
T ss_pred EECCCHHHHHHHH---HHCCCEEEECCHHHHHHCCCEECHHHHHHHHHHHHHHCCCCCEEE-ECCCCCCHHHHHHHHHHH
T ss_conf 6047978889999---827878986453647654766449999999999997689984477-457635678999999999
Q ss_pred -------HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEEEEEHHCCCCCCHHHHEEE
Q ss_conf -------2302333023036899987258999998500000000012210020110111112110000222310110002
Q gi|254780846|r 157 -------LRNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIR 229 (324)
Q Consensus 157 -------~~~~~~~~ISSt~IR~~l~~Gdi~~an~lLGr~y~i~G~Vv~G~~~Gr~lGfPTaNi~~~~~~~p~~GVY~~~ 229 (324)
++.+++ +|+.=.+.-..|.|+.|..-|...|.|+-.| +--++.++|.-.+.
T Consensus 142 ~~~GaDiIQTEGg---tss~p~~~g~~glIekaapTLAaay~IS~~v-------------------~vPVlcASGlS~vT 199 (243)
T pfam04481 142 ESLGIDLIQTEGK---ITSISKNHCVNDLIEKSASTLASTYEISKHV-------------------QLPVICASGLSDVT 199 (243)
T ss_pred HHHCCCEEECCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-------------------CCCEEECCCCCHHH
T ss_conf 9818877872898---7778888425777988758899999998617-------------------87667546764214
Q ss_pred EEEEECCCCCHHCCCCCCC
Q ss_conf 4763056562110578997
Q gi|254780846|r 230 FRTQDQTSYSGVANFGRNP 248 (324)
Q Consensus 230 v~~~~~~~~~~v~niG~~P 248 (324)
+-. . .-.|.+-+|..-
T Consensus 200 ~Pm--A-iaaGAsGVGVGS 215 (243)
T pfam04481 200 VPL--A-FSYGASGIGIGS 215 (243)
T ss_pred HHH--H-HHCCCCCCCHHH
T ss_conf 788--9-974877100657
No 165
>pfam04430 DUF498 Protein of unknown function (DUF498/DUF598). This is a large family of uncharacterized proteins found in all domains of life. The structure shows a novel fold with three beta sheets. A dimeric form is found in the crystal structure. It was suggested that the cleft in between the two monomers might bing nucleic acid.
Probab=24.93 E-value=54 Score=14.29 Aligned_cols=55 Identities=20% Similarity=0.120 Sum_probs=39.0
Q ss_pred HHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCH
Q ss_conf 577522830268886214278029998345530337755602467751012641676152
Q gi|254780846|r 97 LETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDE 156 (324)
Q Consensus 97 ~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~ 156 (324)
..+..++++++- .++....++..|++|. |....-=...++++.++.|+.+.+++.
T Consensus 34 ~~~~~l~~~~l~-~~~~~~~~peiliiGt----G~~~~~l~~~~~~~l~~~gI~vE~m~T 88 (110)
T pfam04430 34 GSFEDLSPEDLA-LLLALAPKPEVLIIGT----GARLRFLPPELREALRKLGIGVEVMDT 88 (110)
T ss_pred CCHHHCCHHHHH-HHHHCCCCCCEEEEEC----CCCCCCCCHHHHHHHHHCCCEEEEECH
T ss_conf 980029999999-9984579987899955----986678999999999975990799775
No 166
>TIGR02089 TTC tartrate dehydrogenase; InterPro: IPR011829 Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate . These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in IPR004429 from INTERPRO and IPR011828 from INTERPRO, respectively.; GO: 0009027 tartrate dehydrogenase activity, 0051287 NAD binding.
Probab=24.73 E-value=24 Score=16.59 Aligned_cols=14 Identities=36% Similarity=0.619 Sum_probs=7.9
Q ss_pred CEEEE-EEEEEEHHC
Q ss_conf 10111-112110000
Q gi|254780846|r 204 RTLGF-PTANMQLSP 217 (324)
Q Consensus 204 r~lGf-PTaNi~~~~ 217 (324)
-.||+ |||||.++.
T Consensus 259 Gs~G~AP~ANInP~g 273 (355)
T TIGR02089 259 GSLGVAPSANINPEG 273 (355)
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 533546566758888
No 167
>KOG1402 consensus
Probab=24.35 E-value=55 Score=14.22 Aligned_cols=136 Identities=16% Similarity=0.189 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHCCCC-CCEEEEE
Q ss_conf 75560246775101264167615223023330230368999872589999985000--00000012210020-1101111
Q gi|254780846|r 133 RAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGY--RFTIESDVIHGEKI-GRTLGFP 209 (324)
Q Consensus 133 r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~Gdi~~an~lLGr--~y~i~G~Vv~G~~~-Gr~lGfP 209 (324)
+=||++.|+..-+.-++-..+++|++-..|..|- -.|-+..|.+|.-+ -|.|.-+|..|-+| |+-+-.-
T Consensus 192 ~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP--------~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d 263 (427)
T KOG1402 192 PYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVP--------PPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACD 263 (427)
T ss_pred CCCCHHHHHHHHCCCCEEEEEEECCCCCCCEEEC--------CCHHHHHHHHHHHHHCEEEEEHHHHHCCCCCCCEEEEE
T ss_conf 2687799999862987568985113466533728--------92067899999875147888244342523467478865
Q ss_pred EEEEEHHCCCC---CCHHHHEEEEEEEECCCCCHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCC
Q ss_conf 12110000222---310110002476305656211057899726779714999994067855189889999460000887
Q gi|254780846|r 210 TANMQLSPDIL---LKEGVYAIRFRTQDQTSYSGVANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEI 286 (324)
Q Consensus 210 TaNi~~~~~~~---p~~GVY~~~v~~~~~~~~~~v~niG~~PT~~~~~~~~iE~hildf~~dlYg~~i~v~f~~~iR~e~ 286 (324)
-.|+.++--++ .--|||-+...+-+...|..+..--.-.|+ -+|--|..+.|.=++.|++|+
T Consensus 264 ~env~PDivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTy---------------ggNpLg~~vaiAalevi~eek 328 (427)
T KOG1402 264 YENVRPDIVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTY---------------GGNPLGCAVAIAALEVIVEEK 328 (427)
T ss_pred HHHCCCCEEEEECCCCCCEEEEEEEEECHHHHHCCCCCCCCCCC---------------CCCHHHHHHHHHHHHHHHHHH
T ss_conf 43158776898111368704568998547898616877555656---------------888088899999999999978
Q ss_pred CCCCH
Q ss_conf 46898
Q gi|254780846|r 287 KFKDI 291 (324)
Q Consensus 287 kF~s~ 291 (324)
--+..
T Consensus 329 L~era 333 (427)
T KOG1402 329 LVERA 333 (427)
T ss_pred HHHHH
T ss_conf 99999
No 168
>PRK02145 consensus
Probab=24.34 E-value=55 Score=14.21 Aligned_cols=22 Identities=5% Similarity=0.216 Sum_probs=8.8
Q ss_pred HHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 26888621427802999834553
Q gi|254780846|r 106 QFIQKVLVEWLEVKTVITGTKFR 128 (324)
Q Consensus 106 ~Fi~~iL~~~l~~k~ivVG~Df~ 128 (324)
+|+++ +.+.++.+.|+++=|.+
T Consensus 112 ~~v~~-~~~~fG~q~Iv~siD~k 133 (257)
T PRK02145 112 QLVRD-AADKYGSQCIVVAIDAK 133 (257)
T ss_pred CHHHH-HHHHCCCCCEEEEEEEE
T ss_conf 02245-78766983449999987
No 169
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=24.26 E-value=48 Score=14.63 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=37.8
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 0299983455303377556024677510126416761522302333023036899987258
Q gi|254780846|r 118 VKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGH 178 (324)
Q Consensus 118 ~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~Gd 178 (324)
+.-|++|..-.-|.-..-|...|.++.++.|+++.....+.++. +.+ ...+++++.+.|
T Consensus 2 v~Ii~~gdel~~G~i~dsn~~~l~~~l~~~G~~v~~~~iv~Dd~-~~i-~~~l~~~~~~~D 60 (133)
T cd00758 2 VAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDA-DSI-RAALIEASREAD 60 (133)
T ss_pred EEEEECCCCCCCCCEEEHHHHHHHHHHHHCCCEEEEEEEECCCH-HHH-HHHHHHHHHCCC
T ss_conf 99998599787782997379999999998899798988989799-999-999999861499
No 170
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase; InterPro: IPR012769 Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.; GO: 0008788 alphaalpha-phosphotrehalase activity, 0005993 trehalose catabolic process, 0005737 cytoplasm.
Probab=23.74 E-value=37 Score=15.35 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=38.2
Q ss_pred CHHHHHCCC-CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 868984788-8662000078999988511310002256405775228302688862142780299983455303377556
Q gi|254780846|r 58 HPRTIIQSS-SPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGD 136 (324)
Q Consensus 58 ~P~~~~~~~-~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd 136 (324)
+|+.|.... .-.--|--.=+|+.+|++||||++-+=||-++=-+=+.-| |.++. .++ =.||=. -|
T Consensus 11 YPkSF~D~~g~G~GDl~GII~KLDYLk~LGvD~iWL~Pfy~SPq~DNGYD-vSDY~--~Id---------P~FGTM--~D 76 (555)
T TIGR02403 11 YPKSFYDSTGDGTGDLRGIIEKLDYLKELGVDYIWLNPFYVSPQKDNGYD-VSDYY--AID---------PLFGTM--AD 76 (555)
T ss_pred CCCCEECCCCCEECCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC-HHCCC--CCC---------CCCCCH--HH
T ss_conf 05632337971321510243344677861887785267545868777763-11014--248---------798888--99
Q ss_pred HHHHHHHHHCCCCEEEECCHH
Q ss_conf 024677510126416761522
Q gi|254780846|r 137 RGILQKRGEKYGFHTVFIDEL 157 (324)
Q Consensus 137 ~~~L~~~~~~~g~~v~~i~~~ 157 (324)
++.|-+-+++.|++|+ ++-|
T Consensus 77 fe~Lv~eAk~r~i~im-LDmV 96 (555)
T TIGR02403 77 FEELVSEAKKRNIKIM-LDMV 96 (555)
T ss_pred HHHHHHHHHHCCCEEE-EEEE
T ss_conf 9999999977798899-9776
No 171
>KOG4063 consensus
Probab=23.45 E-value=57 Score=14.10 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=46.6
Q ss_pred HHHHCCCCC-CEEEEEEEEEEHHCCCCCCHHHHEEEEEEEECCCCCHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCE
Q ss_conf 122100201-1011111211000022231011000247630565621105789972677971499999406785518988
Q gi|254780846|r 195 DVIHGEKIG-RTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSYSGVANFGRNPTMVPNGPLLLESFIFDFSQEIYGQR 273 (324)
Q Consensus 195 ~Vv~G~~~G-r~lGfPTaNi~~~~~~~p~~GVY~~~v~~~~~~~~~~v~niG~~PT~~~~~~~~iE~hildf~~dlYg~~ 273 (324)
.++||.-+| -.+-||-.|=.-...--.-+|||.- +.-.....|..-.-|+.+ .+.-.+.+|..|.|-+++. .
T Consensus 75 t~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CP-l~age~ytY~~slpI~~~---yP~v~v~iew~L~D~d~~~---~ 147 (158)
T KOG4063 75 TVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCP-LSAGEDYTYLNSLPITEN---YPEVSVIIEWQLQDQDNEK---A 147 (158)
T ss_pred HEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEEEEEEECCCC---CCCEEEEEEEEEECCCCCE---E
T ss_conf 12334652407505777787554266632221376-558973699997311356---8851499999986688986---7
Q ss_pred EEEEEEEEC
Q ss_conf 999946000
Q gi|254780846|r 274 CTVSFFDYL 282 (324)
Q Consensus 274 i~v~f~~~i 282 (324)
+.+++-.+|
T Consensus 148 ~Cf~ipakI 156 (158)
T KOG4063 148 VCFEIPAKI 156 (158)
T ss_pred EEEEEEEEE
T ss_conf 999987023
No 172
>pfam02545 Maf Maf-like protein. Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea.
Probab=23.38 E-value=58 Score=14.10 Aligned_cols=39 Identities=15% Similarity=0.328 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHCCCCCCC-CCCCHHHH--HHCCCHHHHHHH
Q ss_conf 0078999988511310002-25640577--522830268886
Q gi|254780846|r 73 SPPSIQEKILEKMGFSALI-RYKFTLET--ANYSAEQFIQKV 111 (324)
Q Consensus 73 ~~~~~k~~~l~~~Gid~vi-~~~F~~~~--a~ls~e~Fi~~i 111 (324)
++-..|.++|+++|+++-+ ..++|++- ..++|.+++..+
T Consensus 7 S~S~~R~~lL~~~gi~f~~~~~~iDE~~~~~~~~p~~~~~~l 48 (193)
T pfam02545 7 STSPRRKELLEDLGIPFEVIVSYFDEESVLYSLDPREYVVDL 48 (193)
T ss_pred CCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 799999999997799939978998988786767866899999
No 173
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=23.32 E-value=58 Score=14.09 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=30.0
Q ss_pred HHHHHHHHHCCCCCCC-CCCCHHHHHHC-CCHHHHHHHHCCC-------CCEEEEEECCCC
Q ss_conf 8999988511310002-25640577522-8302688862142-------780299983455
Q gi|254780846|r 76 SIQEKILEKMGFSALI-RYKFTLETANY-SAEQFIQKVLVEW-------LEVKTVITGTKF 127 (324)
Q Consensus 76 ~~k~~~l~~~Gid~vi-~~~F~~~~a~l-s~e~Fi~~iL~~~-------l~~k~ivVG~Df 127 (324)
-.|.++|+++||+..+ .-+||+..-.. .|++++..+-..| +....+|+|.|-
T Consensus 12 PrR~elL~~~gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA~~va~~~~~~~~VigaDt 72 (193)
T COG0424 12 PRRRELLEQLGIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKARAVAARLPPDALVIGADT 72 (193)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCE
T ss_conf 8999999987998198068999876657897999999999999999984799987996274
No 174
>PRK02676 consensus
Probab=23.30 E-value=58 Score=14.09 Aligned_cols=38 Identities=11% Similarity=0.342 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHCCCCCCCCC-CCHHHH-HHCCCHHHHHHH
Q ss_conf 07899998851131000225-640577-522830268886
Q gi|254780846|r 74 PPSIQEKILEKMGFSALIRY-KFTLET-ANYSAEQFIQKV 111 (324)
Q Consensus 74 ~~~~k~~~l~~~Gid~vi~~-~F~~~~-a~ls~e~Fi~~i 111 (324)
.-..|.++|+++|+++.+.. ++|+.. ...+|.+++..+
T Consensus 10 ~SprR~~lL~~~g~~f~v~~~~idE~~~~~~~p~~~~~~l 49 (196)
T PRK02676 10 ASPARRRLLQTVGIDPIVQPSHFDESQIQATDPVALVQTL 49 (196)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 9999999999779983997899998887768999999999
No 175
>pfam10237 N6-adenineMlase Probable N6-adenine methyltransferase. This is a protein of approximately 200 residues which is conserved from plants to humans. It contains a highly conserved QFW motif close to the N-terminus and a DPPF motif in the centre. The DPPF motif is characteristic of N-6 adenine-specific DNA methylases, and this family is found in eukaryotes.
Probab=23.16 E-value=49 Score=14.58 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=35.0
Q ss_pred CCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCH-HHCCCCCCCC
Q ss_conf 000225640577522830268886214278029998345530337755602467751012641676152-2302333023
Q gi|254780846|r 88 SALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDE-LRNNKSQIVS 166 (324)
Q Consensus 88 d~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~-~~~~~~~~IS 166 (324)
..+.+.+||+.|+.. +.+|+ =+||. ....|.+.- ...|.+++++| ....+...-+
T Consensus 49 ~~v~LfEyD~RF~~~-~~~Fv---------------fYDyn-------~P~~lp~~l-~~~fD~vi~DPPFLseec~~K~ 104 (161)
T pfam10237 49 KNVYLLEYDKRFAVY-GGEFV---------------FYDYN-------KPLELPEQL-KGKFDRVIADPPFLSEECLTKT 104 (161)
T ss_pred CCEEEEEECHHHHHC-CCCEE---------------ECCCC-------CCCCCHHHH-HCCCCEEEECCCCCCHHHHHHH
T ss_conf 737996543058767-99416---------------77789-------801087997-0867889989999899999999
Q ss_pred HHHHHHHHHH
Q ss_conf 0368999872
Q gi|254780846|r 167 SSNIRTALTK 176 (324)
Q Consensus 167 St~IR~~l~~ 176 (324)
+..||.+++.
T Consensus 105 a~t~~~L~k~ 114 (161)
T pfam10237 105 AITIKLLLKP 114 (161)
T ss_pred HHHHHHHHCC
T ss_conf 9999998089
No 176
>KOG2929 consensus
Probab=23.08 E-value=7.2 Score=19.96 Aligned_cols=17 Identities=6% Similarity=-0.269 Sum_probs=8.8
Q ss_pred HHHHHHHHCCHHHHHHH
Q ss_conf 99985000000000122
Q gi|254780846|r 181 NAAHLLGYRFTIESDVI 197 (324)
Q Consensus 181 ~an~lLGr~y~i~G~Vv 197 (324)
.++.+.+|.-.++|.+.
T Consensus 162 ~~~~~~~rdpr~s~~~~ 178 (348)
T KOG2929 162 VLNVLYNRDPRFSGMGW 178 (348)
T ss_pred HHHHHHCCCCCCCCCCC
T ss_conf 24566525885123542
No 177
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=23.05 E-value=58 Score=14.05 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=18.6
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHH
Q ss_conf 99983455303377556024677510126416761522
Q gi|254780846|r 120 TVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDEL 157 (324)
Q Consensus 120 ~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~ 157 (324)
.+-|..|...|.. ...+.++.+..|++++.+...
T Consensus 173 ~lkIvid~~~G~~----~~~~~~ll~~lg~~v~~~~~~ 206 (461)
T cd05800 173 GLKVVVDPMYGAG----AGYLEELLRGAGVDVEEIRAE 206 (461)
T ss_pred CCEEEEECCCCHH----HHHHHHHHHHHCCEEEEECCC
T ss_conf 9779998899656----655899998609749997771
No 178
>pfam00988 CPSase_sm_chain Carbamoyl-phosphate synthase small chain, CPSase domain. The carbamoyl-phosphate synthase domain is in the amino terminus of protein. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00289. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=22.93 E-value=45 Score=14.79 Aligned_cols=88 Identities=22% Similarity=0.308 Sum_probs=45.0
Q ss_pred HHHHHHCCCCCC------EEEEEEEEEEHHCCCCCCHHHHEEEEEEEECCCCCHHCCCCCCCCCCCCCCEEEEEEEE-CC
Q ss_conf 001221002011------01111121100002223101100024763056562110578997267797149999940-67
Q gi|254780846|r 193 ESDVIHGEKIGR------TLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSYSGVANFGRNPTMVPNGPLLLESFIF-DF 265 (324)
Q Consensus 193 ~G~Vv~G~~~Gr------~lGfPTaNi~~~~~~~p~~GVY~~~v~~~~~~~~~~v~niG~~PT~~~~~~~~iE~hil-df 265 (324)
.|.|-.|...|. ++=|-|+.-...+- .-+=.|+....+ -.||-+-|+|.++...+..++.+...|. ++
T Consensus 9 dG~~f~G~~fG~~~~~~GEvvFnT~mtGYqE~--lTDPSY~gQIl~---fT~P~IGNyGin~~d~ES~~~~~~G~iv~~~ 83 (131)
T pfam00988 9 DGTVFEGESFGAEGEAVGEVVFNTGMTGYQEI--LTDPSYAGQIVV---FTYPLIGNYGINPEDFESDKPHAKGLIVREL 83 (131)
T ss_pred CCCEEEEEECCCCCCEEEEEEEECCCCCCCEE--CCCCCCCCEEEE---ECCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 99999879737776577799997887654403--258765774899---7466404417797432004764057985356
Q ss_pred CCCCCCCEEEEEEEEECCCC
Q ss_conf 85518988999946000088
Q gi|254780846|r 266 SQEIYGQRCTVSFFDYLRPE 285 (324)
Q Consensus 266 ~~dlYg~~i~v~f~~~iR~e 285 (324)
...--.-+-.-.|.+|++.+
T Consensus 84 ~~~~S~~~s~~sL~~~L~~~ 103 (131)
T pfam00988 84 SDIPSNWRSEESLDEFLKEH 103 (131)
T ss_pred CCCCCCHHHHCCHHHHHHHC
T ss_conf 65766532335999999977
No 179
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase; InterPro: IPR010121 Pyruvate phosphate dikinase (PPDK, or pyruvate orthophosphate dikinase) is found in plants, bacteria and archaea. The amino acid sequence identity between bacterial and plant enzymes is high, and they are similar in sequence to other PEP-utilizing enzymes. PPDK catalyses the reversible conversion of ATP and pyruvate to AMP and PEP (phosphoenolpyruvate). In bacteria such as Clostridium symbiosum, PPDK uses Mg2+ and NH4+ ions as cofactors . The enzyme has three domains: the N- and C-terminal domains each have an active site centre that catalyses a different step in the reaction, and the middle domain has a carrier histidine residue that moves between the two active centres. In plants, PPDK is localised predominantly in chloroplast stroma where it catalyses the rate-limiting step in the C4 photosynthetic pathway, namely the synthesis of PEP, which acts as the primary CO2 acceptor in C4 photosynthesis . PPDK activity in C4 plants is strictly regulated by light, its activity decreasing in darkness. This response is regulated by phosphorylation and dephosphorylation of the enzyme using ADP; such regulation is not seen in the bacterial form of the enzyme. PPDK is also found in C3 plants, but it is not known to have a photosynthetic role .; GO: 0050242 pyruvate phosphate dikinase activity.
Probab=22.61 E-value=60 Score=14.00 Aligned_cols=102 Identities=19% Similarity=0.238 Sum_probs=54.2
Q ss_pred CCCCCCCCCCHHH--HHHHHHCCCCEEEECCH--HHCCCCCCCCHHHHHHHHHHHH--H--HHHHHHHHHCCHHHHHHHH
Q ss_conf 5303377556024--67751012641676152--2302333023036899987258--9--9999850000000001221
Q gi|254780846|r 127 FRFGKDRAGDRGI--LQKRGEKYGFHTVFIDE--LRNNKSQIVSSSNIRTALTKGH--V--LNAAHLLGYRFTIESDVIH 198 (324)
Q Consensus 127 f~FG~~r~Gd~~~--L~~~~~~~g~~v~~i~~--~~~~~~~~ISSt~IR~~l~~Gd--i--~~an~lLGr~y~i~G~Vv~ 198 (324)
|.||.+++-.-.. +|++-.-.|..+-.+-. +....|=.||+-..+++++.|+ + ...++..-.--.++
T Consensus 5 Y~F~~~~~eG~~~el~k~LLGGKGAnLAEMt~lGLPVP~GFTITTeaC~~Y~~~g~k~~P~gl~eE~~~~l~~lE----- 79 (920)
T TIGR01828 5 YAFGEGGSEGNKSELMKNLLGGKGANLAEMTKLGLPVPPGFTITTEACNDYLANGKKQFPKGLQEEVKEALKKLE----- 79 (920)
T ss_pred EECCCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-----
T ss_conf 622788678755666663368877127998646787435501306789999970777788647999999999999-----
Q ss_pred CCCCCCEEEEEEEEEEHHCCCCCCHHHHEEEEEEEECCCCCHH----CCCCCC
Q ss_conf 0020110111112110000222310110002476305656211----057899
Q gi|254780846|r 199 GEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSYSGV----ANFGRN 247 (324)
Q Consensus 199 G~~~Gr~lGfPTaNi~~~~~~~p~~GVY~~~v~~~~~~~~~~v----~niG~~ 247 (324)
++.|+++|.|| |--+ ++|+-.-...+||| .|+|-|
T Consensus 80 -~~~GK~FG~~~-nPLL------------VSVRSGA~~SMPGMMDTvLNLGLN 118 (920)
T TIGR01828 80 -EKTGKKFGDAE-NPLL------------VSVRSGAAVSMPGMMDTVLNLGLN 118 (920)
T ss_pred -HHHCCCCCCCC-CCCE------------EEECCCCCCCCCCCCHHHHCCCCC
T ss_conf -87163057699-8831------------212267888897852665024552
No 180
>PRK08999 hypothetical protein; Provisional
Probab=22.53 E-value=60 Score=13.99 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHCCHHHHHHH
Q ss_conf 89999985000000000122
Q gi|254780846|r 178 HVLNAAHLLGYRFTIESDVI 197 (324)
Q Consensus 178 di~~an~lLGr~y~i~G~Vv 197 (324)
+++.|+++ |-.|..-|.|.
T Consensus 238 e~~~A~~~-g~Dyi~lsPV~ 256 (312)
T PRK08999 238 ELAHAQQL-GVDFAVLSPVQ 256 (312)
T ss_pred HHHHHHHH-CCCEEEECCCC
T ss_conf 99999870-89969981544
No 181
>PRK00078 Maf-like protein; Reviewed
Probab=22.51 E-value=60 Score=13.99 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHCCCCCC-CCCCCHHHHH--HCCCHHHHHH
Q ss_conf 07899998851131000-2256405775--2283026888
Q gi|254780846|r 74 PPSIQEKILEKMGFSAL-IRYKFTLETA--NYSAEQFIQK 110 (324)
Q Consensus 74 ~~~~k~~~l~~~Gid~v-i~~~F~~~~a--~ls~e~Fi~~ 110 (324)
.-..|.++|+++|+++- +..+||++-. ..++++++..
T Consensus 8 ~S~~R~~lL~~~g~~f~v~~~~idE~~~~~~~~~~~~v~~ 47 (192)
T PRK00078 8 ASERRQELLKRIVEDFQVIVSDFDESSVPFKGNIESYVMN 47 (192)
T ss_pred CCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 9999999997189997997199897988778998999999
No 182
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=22.32 E-value=60 Score=13.96 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 000789999885113100022564057752283026888621427802999834553
Q gi|254780846|r 72 LSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFR 128 (324)
Q Consensus 72 l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~ 128 (324)
+.+.++=.++| +.|+|.+++=. .+-.+| +|+++ +.+.++.+.|+++-|.+
T Consensus 84 Irs~e~~~~ll-~~GadkViigS----~a~~np-~~i~~-~~~~fG~q~Iv~~iD~~ 133 (252)
T PRK13597 84 VRSLEDARKLL-LSGADKVSVNS----AAVRRP-ELIRE-LADHFGAQAVVLAIDAR 133 (252)
T ss_pred CCCHHHHHHHH-HCCCCEEEECH----HHHHCC-HHHHH-HHHHCCCCCEEEEEEEE
T ss_conf 13089999998-56987798326----667493-78999-99874996529999888
No 183
>PTZ00081 enolase (2-phospho-D-glycerate hydrolase); Provisional
Probab=22.23 E-value=61 Score=13.95 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=20.5
Q ss_pred ECCC-CCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 0678-5518988999946000088746898999999999
Q gi|254780846|r 263 FDFS-QEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGE 300 (324)
Q Consensus 263 ldf~-~dlYg~~i~v~f~~~iR~e~kF~s~~~L~~qI~~ 300 (324)
+|.. -.+|...=..+-+.+-.++..|-|.++|++-...
T Consensus 251 lD~AAsefy~~~~~~Y~l~~k~~~~~~~s~~eli~~y~~ 289 (442)
T PTZ00081 251 MDVAASEFYDAEKKMYNLTFKCPEPTYKTGAELVETYED 289 (442)
T ss_pred CCHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 023567776368963775330577772599999999999
No 184
>cd00737 endolysin_autolysin Endolysins and autolysins are found in viruses and bacteria, respectively. The ds DNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall hetropolymer peptidoglycan and cell division. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
Probab=22.18 E-value=58 Score=14.06 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC
Q ss_conf 23036899987258999998500000000012210020
Q gi|254780846|r 165 VSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIHGEKI 202 (324)
Q Consensus 165 ISSt~IR~~l~~Gdi~~an~lLGr~y~i~G~Vv~G~~~ 202 (324)
+.+|.++..|.+||...|-.-+-+.-.-.|++..|-.+
T Consensus 91 ~~~st~~~~ln~G~~~~a~~~~~~w~~~~g~~~~GL~~ 128 (133)
T cd00737 91 FRTSTLLRKLNAGDWAGACAQLPRWVKAGGKVLPGLVR 128 (133)
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECHHHHH
T ss_conf 32528999998779999999998343249798587898
No 185
>PRK03442 consensus
Probab=22.18 E-value=61 Score=13.94 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHCCCCCCC-CCCCHHHH------HHCCCHHHHHH
Q ss_conf 078999988511310002-25640577------52283026888
Q gi|254780846|r 74 PPSIQEKILEKMGFSALI-RYKFTLET------ANYSAEQFIQK 110 (324)
Q Consensus 74 ~~~~k~~~l~~~Gid~vi-~~~F~~~~------a~ls~e~Fi~~ 110 (324)
....|.++|+++|+++.+ ..+||++- ...+|++++..
T Consensus 9 ~SprR~~lL~~~g~~f~v~~~~iDE~~~~~~~~~~~~p~~~v~~ 52 (213)
T PRK03442 9 ASPGRLKVLRQAGIDPLVVVSGVDEDAVIAALGPDAPPSDVVCA 52 (213)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCHHHCCCCCCCHHHHHHH
T ss_conf 99999999997799819974899987301124788999999999
No 186
>TIGR00342 TIGR00342 thiamine biosynthesis/tRNA modification protein ThiI; InterPro: IPR003720 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway . Almost all the proteins in this group have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0009228 thiamin biosynthetic process.
Probab=21.79 E-value=62 Score=13.89 Aligned_cols=86 Identities=20% Similarity=0.219 Sum_probs=47.7
Q ss_pred CCCCCCCCEEEEE--ECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 2761018849999--31565028999999999995027977999837986898478886620000789999885113100
Q gi|254780846|r 12 SLPNHLKGGVVAI--GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSA 89 (324)
Q Consensus 12 ~~p~~~~~~vvti--G~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~ 89 (324)
=+|--.+|.|+++ |-||.-=-+-.. +.+++..+.++|...|.. .++....+..+..++...+..+-=.
T Consensus 180 GLPvG~~Gkvl~LlSGGiDSPVAaf~~-------m~RGc~V~~vhf~~~~~~---~~~~~~kv~~la~~~~~~~~~~~~~ 249 (391)
T TIGR00342 180 GLPVGTQGKVLALLSGGIDSPVAAFLA-------MKRGCRVVAVHFFNEPAA---SEKAREKVERLANLLSLNETGGSVK 249 (391)
T ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHH-------HHCCCEEEEEEECCCCCC---CHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 886202536320411883516799999-------663877999973288552---4689999999999885400037999
Q ss_pred CCCCCCHH---HHHHCCCHHH
Q ss_conf 02256405---7752283026
Q gi|254780846|r 90 LIRYKFTL---ETANYSAEQF 107 (324)
Q Consensus 90 vi~~~F~~---~~a~ls~e~F 107 (324)
++..||++ ++.+..+|.+
T Consensus 250 l~~~~F~~~~~~~~~~~~e~~ 270 (391)
T TIGR00342 250 LYVVDFTDVQEEIIEIIPEKY 270 (391)
T ss_pred EEEECHHHHHHHHHHCCCCCC
T ss_conf 998543899999984189987
No 187
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=21.75 E-value=62 Score=13.89 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=27.4
Q ss_pred HHHHHHHHHCCCC--E-EEEEE---CCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHH
Q ss_conf 9999999502797--7-99983---7986898478886620000789999885113100022564057752283026
Q gi|254780846|r 37 ILEQAIKIANNSP--I-TVLSF---NPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQF 107 (324)
Q Consensus 37 Li~~~~~~a~~~~--~-~viTF---~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a~ls~e~F 107 (324)
-++.+.+.++..+ . ..++. .|+|+.++.+.+- . +=..+.+..++|.+++- . .+||-+-
T Consensus 18 ~l~El~~L~~t~g~~vv~~~~q~~~~~~~~~~~G~GKl----~---ei~~~~~~~~~~~vi~d---~---~Lsp~Q~ 81 (351)
T TIGR03156 18 SLEELAELARTAGAEVVGTVTQKRSRPDPATYIGKGKV----E---EIAELVEALEADLVIFN---H---ELSPSQE 81 (351)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEECCCCCCCCEECCCHH----H---HHHHHHHHCCCCEEEEC---C---CCCHHHH
T ss_conf 59999999997899899999994489974200150199----9---99999985599999998---9---7999999
No 188
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878 This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=21.71 E-value=34 Score=15.55 Aligned_cols=42 Identities=24% Similarity=0.388 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEEEEEHHCCCCC------CHHHHEEEE
Q ss_conf 230368999872589999985000000000122100201101111121100002223------101100024
Q gi|254780846|r 165 VSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILL------KEGVYAIRF 230 (324)
Q Consensus 165 ISSt~IR~~l~~Gdi~~an~lLGr~y~i~G~Vv~G~~~Gr~lGfPTaNi~~~~~~~p------~~GVY~~~v 230 (324)
+||..|+-++..| +.|.|+.|=|+| +.+.+++| ..||+++-+
T Consensus 296 ~~p~il~~~~d~G--------------ykGiViEGTGLG----------Hvs~~~ip~i~ra~d~Gv~V~MT 343 (413)
T TIGR02153 296 LDPEILEFLVDKG--------------YKGIVIEGTGLG----------HVSEDWIPSIKRATDDGVPVVMT 343 (413)
T ss_pred CCHHHHHHHHCCC--------------CEEEEEECCCCC----------CCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8888999985187--------------159998337875----------55235899999987589689996
No 189
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=20.83 E-value=21 Score=16.90 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=19.4
Q ss_pred CHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 302688862142780299983455303377556024677510126
Q gi|254780846|r 104 AEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYG 148 (324)
Q Consensus 104 ~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g 148 (324)
|-.|+.++-. =+-+-++||.- ++ -.+-.++.++..|
T Consensus 53 A~~~v~~~~~--~~g~ILfVgTK-~~------a~~~V~~~A~r~g 88 (252)
T COG0052 53 AYKFLRRIAA--NGGKILFVGTK-KQ------AQEPVKEFAERTG 88 (252)
T ss_pred HHHHHHHHHC--CCCEEEEEECH-HH------HHHHHHHHHHHHC
T ss_conf 9999999972--89979999520-88------7899999999959
No 190
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ; InterPro: IPR012802 Members of this family represent the alpha subunit of the multifunctional enzyme complex of the fatty acid degradation cycle, which plays a minor role in aerobic beta-oxidation of fatty acids. The FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (4.2.1.17 from EC), 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC), and 3-hydroxybutyryl-CoA epimerase (5.1.2.3 from EC). A representative is the Escherichia coli FadJ protein (also named YfcX) (P77399 from SWISSPROT). This entry excludes FadB of IPR012799 from INTERPRO.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0008692 3-hydroxybutyryl-CoA epimerase activity, 0051287 NAD binding, 0006635 fatty acid beta-oxidation, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=20.80 E-value=51 Score=14.41 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=5.9
Q ss_pred ECCCCCCHHHHHH
Q ss_conf 3156502899999
Q gi|254780846|r 25 GNFDGIHLGHHLI 37 (324)
Q Consensus 25 G~FDGvH~GHq~L 37 (324)
-.|.-+.+=||-+
T Consensus 394 AVFEdl~LK~QMV 406 (732)
T TIGR02440 394 AVFEDLELKHQMV 406 (732)
T ss_pred EEECCHHHHHHHH
T ss_conf 7603502123378
No 191
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=20.77 E-value=65 Score=13.76 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHHCCCCCCC
Q ss_conf 00078999988511310002
Q gi|254780846|r 72 LSPPSIQEKILEKMGFSALI 91 (324)
Q Consensus 72 l~~~~~k~~~l~~~Gid~vi 91 (324)
.++.+.-..+|++-|+++-+
T Consensus 10 C~t~rka~~~Le~~gi~~~~ 29 (113)
T cd03033 10 CANNARQKALLEAAGHEVEV 29 (113)
T ss_pred CHHHHHHHHHHHHCCCCCEE
T ss_conf 87579999999987999479
No 192
>PTZ00150 phosphoglucomutase; Provisional
Probab=20.17 E-value=67 Score=13.68 Aligned_cols=24 Identities=8% Similarity=0.003 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHHHHHHH-HHHH
Q ss_conf 46898999999999799999-9987
Q gi|254780846|r 287 KFKDIEKLKIYMGEDEKKAR-KILE 310 (324)
Q Consensus 287 kF~s~~~L~~qI~~D~~~a~-~~l~ 310 (324)
+=+|.++.++.+++=.+... .+++
T Consensus 560 ~~~~~~~a~~~l~~~~~~i~~~~~~ 584 (593)
T PTZ00150 560 SRDSYEQAKEEIDQLIDEVMPLFMQ 584 (593)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 5497999999999999999999839
No 193
>PRK11058 putative GTPase HflX; Provisional
Probab=20.09 E-value=67 Score=13.67 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=30.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCE---EEEEE---CCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 4999931565028999999999995027977---99983---798689847888662000078999988511310002
Q gi|254780846|r 20 GVVAIGNFDGIHLGHHLILEQAIKIANNSPI---TVLSF---NPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALI 91 (324)
Q Consensus 20 ~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~---~viTF---~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi 91 (324)
-++-+|..-+ ..++.+-++.+.+.|+..+. ..++- .|+|+.++.+.+- ++=..+.+..++|.++
T Consensus 10 raiLV~v~~~-~~~~~e~l~El~~L~~tag~evv~~~~q~r~~p~p~~~iG~GK~-------~El~~~~~~~~~d~vi 79 (426)
T PRK11058 10 QAVLVHIYFT-QDKDMEDLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKA-------VEIAEAVKATGASVVL 79 (426)
T ss_pred EEEEEEEECC-CCCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCCEECHHHH-------HHHHHHHHHCCCCEEE
T ss_conf 6999999569-98640029999999997899799999994389975310232099-------9999999964989999
Done!