HHsearch results for GI: 254780846 and protein with PDBid: 3glv_A

>3glv_A Lipopolysaccharide core biosynthesis protein; structural genomics, PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=99.53  E-value=1.6e-14  Score=113.85  Aligned_cols=134  Identities=19%  Similarity=0.253  Sum_probs=81.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             99993156502899999999999502797799983798689847888662000078999988511310002256405775
Q gi|254780846|r   21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETA  100 (324)
Q Consensus        21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a  100 (324)
                      |+|.|+||++|+||+++|++|.+.+..  .. +...+.+..-..+..+   ....+++...+...-....+         
T Consensus         5 V~~~G~FD~~H~GH~~ll~~Ak~~~~~--~~-v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------   69 (143)
T 3glv_A            5 VMATGVFDILHLGHIHYLKESKKLGDE--LV-VVVARDSTARNNGKIP---IFDENSRLALISELKVVDRA---------   69 (143)
T ss_dssp             EEEEECCSSCCHHHHHHHHHHHTTSSE--EE-EEECCHHHHHHTTCCC---SSCHHHHHHHHTTBTTCSEE---------
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHCCCC--CC-CCCCCCCCCCCCCCCC---HHHHHHHHHHHCCCCCEEEE---------
T ss_conf             999857899989999999999870982--23-2223574000233220---06899999862245540489---------


Q ss_pred             HCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             22830268886214278029998345530337755602467751012641676152230233302303689998725
Q gi|254780846|r  101 NYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG  177 (324)
Q Consensus       101 ~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~G  177 (324)
                      ...++.+....+ .++++..+++|.||+||..      .+.+.+++++.++.+++... .++..||||.||+.|.+.
T Consensus        70 ~~~~~~~~~~~~-~~~~~~~~v~G~D~~~~~~------~~~~~~~~~~~~~~~i~~~~-~~~~~iSST~I~~~i~~~  138 (143)
T 3glv_A           70 ILGHEGDMMKTV-IEVKPDIITLGYDQKFDEA------ELQSKINKLGITVKIVRISK-YDGQLNSSSSVRKKIMEL  138 (143)
T ss_dssp             EECCTTCHHHHH-HHHCCSEEEECTTCHHHHH------HHHHHHHHHTCCCEEEECCC-CC----------------
T ss_pred             EEECCHHHHHHH-HHHCCCEEEECCCCCCCCH------HHHHHHHHCCCCEEEEEEEC-CCCEEEEHHHHHHHHHHH
T ss_conf             974114677899-9969998997787547633------78999997199189999665-899388579999999996