HHsearch results for GI: 254780846 and protein with PDBid: 3glv_A
>3glv_A Lipopolysaccharide core biosynthesis protein; structural genomics, PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=99.53 E-value=1.6e-14 Score=113.85 Aligned_cols=134 Identities=19% Similarity=0.253 Sum_probs=81.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 99993156502899999999999502797799983798689847888662000078999988511310002256405775
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETA 100 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~~~~a 100 (324)
|+|.|+||++|+||+++|++|.+.+.. .. +...+.+..-..+..+ ....+++...+...-....+
T Consensus 5 V~~~G~FD~~H~GH~~ll~~Ak~~~~~--~~-v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--------- 69 (143)
T 3glv_A 5 VMATGVFDILHLGHIHYLKESKKLGDE--LV-VVVARDSTARNNGKIP---IFDENSRLALISELKVVDRA--------- 69 (143)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHTTSSE--EE-EEECCHHHHHHTTCCC---SSCHHHHHHHHTTBTTCSEE---------
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCC--CC-CCCCCCCCCCCCCCCC---HHHHHHHHHHHCCCCCEEEE---------
T ss_conf 999857899989999999999870982--23-2223574000233220---06899999862245540489---------
Q ss_pred HCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 22830268886214278029998345530337755602467751012641676152230233302303689998725
Q gi|254780846|r 101 NYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177 (324)
Q Consensus 101 ~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~G 177 (324)
...++.+....+ .++++..+++|.||+||.. .+.+.+++++.++.+++... .++..||||.||+.|.+.
T Consensus 70 ~~~~~~~~~~~~-~~~~~~~~v~G~D~~~~~~------~~~~~~~~~~~~~~~i~~~~-~~~~~iSST~I~~~i~~~ 138 (143)
T 3glv_A 70 ILGHEGDMMKTV-IEVKPDIITLGYDQKFDEA------ELQSKINKLGITVKIVRISK-YDGQLNSSSSVRKKIMEL 138 (143)
T ss_dssp EECCTTCHHHHH-HHHCCSEEEECTTCHHHHH------HHHHHHHHHTCCCEEEECCC-CC----------------
T ss_pred EEECCHHHHHHH-HHHCCCEEEECCCCCCCCH------HHHHHHHHCCCCEEEEEEEC-CCCEEEEHHHHHHHHHHH
T ss_conf 974114677899-9969998997787547633------78999997199189999665-899388579999999996