RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780846|ref|YP_003065259.1| bifunctional riboflavin
kinase/FMN adenylyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(324 letters)
>gnl|CDD|30545 COG0196, RibF, FAD synthase [Coenzyme metabolism].
Length = 304
Score = 272 bits (698), Expect = 8e-74
Identities = 125/311 (40%), Positives = 187/311 (60%), Gaps = 13/311 (4%)
Query: 1 MHVFHNIEINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPH 58
+ HNI + L+G V+ IGNFDG+HLGH +L QA++ A P+ V++F PH
Sbjct: 4 IRGTHNIPED------LRGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPH 57
Query: 59 PRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEV 118
PR +++ P L+P + ++L G AL+ F LE AN SAE+F++ +LVE L V
Sbjct: 58 PRELLKPDKPPTRLTPLREKIRLLAGYGVDALVVLDFDLEFANLSAEEFVE-LLVEKLNV 116
Query: 119 KTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGH 178
K ++ G FRFGK R G+ +L++ G+K GF + ++ +SS+ IR AL +G
Sbjct: 117 KHIVVGFDFRFGKGRQGNAELLRELGQK-GFEVTIVPKINEEG-IRISSTAIRQALREGD 174
Query: 179 VLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSY 238
+ A LLG ++IE V+HG+K+GRTLGFPTAN+ L ++L GVYA+R + Y
Sbjct: 175 LEEANKLLGRPYSIEGKVVHGQKLGRTLGFPTANIYLKDNVLPAFGVYAVRVKLDGGV-Y 233
Query: 239 SGVANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYM 298
GVAN G PT+ LE I DF+ ++YG+R V F ++R E KF +++LK +
Sbjct: 234 PGVANVGYRPTVD-GSERSLEVHILDFNGDLYGERVKVRFLKFIRDEKKFDSLDELKEQI 292
Query: 299 GEDEKKARKIL 309
+D ++ARK+L
Sbjct: 293 EKDIERARKLL 303
>gnl|CDD|185679 cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the
bifunctional enzyme. FAD synthetase_N. N-terminal
domain of the bifunctional riboflavin biosynthesis
protein riboflavin kinase/FAD synthetase. These enzymes
have both ATP:riboflavin 5'-phosphotransferase and
ATP:FMN-adenylyltransferase activities. The N-terminal
domain is believed to play a role in the adenylylation
reaction of FAD synthetases. The C-terminal domain is
thought to have kinase activity. FAD synthetase is
present among all kingdoms of life. However, the
bifunctional enzyme is not found in mammals, which use
separate enzymes for FMN and FAD formation.
Length = 180
Score = 173 bits (441), Expect = 5e-44
Identities = 74/181 (40%), Positives = 108/181 (59%), Gaps = 4/181 (2%)
Query: 21 VVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQ 78
VVAIGNFDG+HLGH +++ KIA P VL+F+PHPR + L+ +
Sbjct: 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEK 61
Query: 79 EKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRG 138
++LE +G L+ F E A+ SAE+F++ +LV+ L K V+ G FRFGK R+GD
Sbjct: 62 LELLESLGVDYLLVLPFDKEFASLSAEEFVEDLLVK-LNAKHVVVGFDFRFGKGRSGDAE 120
Query: 139 ILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIH 198
+L++ G+KYGF + + + + VSS+ IR AL +G V A LLG ++IE V+H
Sbjct: 121 LLKELGKKYGFEVTVVPPVTLD-GERVSSTRIREALAEGDVELANELLGRPYSIEGRVVH 179
Query: 199 G 199
G
Sbjct: 180 G 180
>gnl|CDD|145043 pfam01687, Flavokinase, Riboflavin kinase. This family represents
the C-terminal region of the bifunctional riboflavin
biosynthesis protein known as RibC in Bacillus subtilis.
The RibC protein from Bacillus subtilis has both
flavokinase and flavin adenine dinucleotide synthetase
(FAD-synthetase) activities. RibC plays an essential
role in the flavin metabolism. This domain is thought to
have kinase activity.
Length = 125
Score = 150 bits (382), Expect = 4e-37
Identities = 59/127 (46%), Positives = 78/127 (61%), Gaps = 3/127 (2%)
Query: 185 LLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILL-KEGVYAIRFRTQDQTSYSGVAN 243
LLG ++I V+HG+ GRTLGFPTAN+ L D LL K GVYA+R + + Y GVAN
Sbjct: 1 LLGRPYSISGTVVHGKGRGRTLGFPTANLSLPKDKLLPKNGVYAVRVKIDGKV-YPGVAN 59
Query: 244 FGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEK 303
G NPT +E I DF ++YG+ V F +LRPE KF +E+LK + +D +
Sbjct: 60 IGVNPT-FGGTKPTIEVHILDFDGDLYGEEIRVEFLKFLRPEKKFDSLEELKAQIEKDIE 118
Query: 304 KARKILE 310
+ARKIL
Sbjct: 119 QARKILA 125
>gnl|CDD|38320 KOG3110, KOG3110, KOG3110, Riboflavin kinase [Coenzyme transport
and metabolism].
Length = 153
Score = 50.7 bits (121), Expect = 6e-07
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Query: 188 YRFTIESDVIHG-EKIGRTLGFPTANMQLS--PDIL--LKEGVYAIRFRTQDQTSYSGVA 242
+V+ G + + LG PTAN + P + L GVY + V
Sbjct: 11 LPLFFGGEVVRGFGRGSKELGIPTANFPENVVPKLPEDLPSGVYFGWAHVDKGDVFKMVM 70
Query: 243 NFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDE 302
+ G NP + I DF ++ YG+ V Y+RPE+ F +E L + D
Sbjct: 71 SIGWNPYYKNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDI 130
Query: 303 KKARKILES 311
+ A+K+L+
Sbjct: 131 EVAKKVLDL 139
>gnl|CDD|185678 cd02039, cytidylyltransferase_like, Cytidylyltransferase-like
domain. Cytidylyltransferase-like domain. Many of these
proteins are known to use CTP or ATP and release
pyrophosphate. Protein families that contain at least
one copy of this domain include citrate lyase ligase,
pantoate-beta-alanine ligase, glycerol-3-phosphate
cytidyltransferase, ADP-heptose synthase, phosphocholine
cytidylyltransferase, lipopolysaccharide core
biosynthesis protein KdtB, the bifunctional protein
NadR, and a number whose function is unknown.
Length = 143
Score = 37.4 bits (87), Expect = 0.006
Identities = 28/157 (17%), Positives = 60/157 (38%), Gaps = 19/157 (12%)
Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK 80
+ IG F+ HLGH ++++A++ A + + ++ + P P S+ E+
Sbjct: 2 GIIIGRFEPFHLGHLKLIKEALEEALDE-VIIIIVSNPP-------KKKRNKDPFSLHER 53
Query: 81 ILE-KMGFSALIR---YKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGD 136
+ K ++ F + ++ +L + V+ G F FGK+
Sbjct: 54 VEMLKEILKDRLKVVPVDFPEVKILLAVVFILKILLK--VGPDKVVVGEDFAFGKNA--- 108
Query: 137 RGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTA 173
K ++ ++ R + +SS+ IR
Sbjct: 109 --SYNKDLKELFLDIEIVEVPRVRDGKKISSTLIREL 143
>gnl|CDD|144891 pfam01467, CTP_transf_2, Cytidylyltransferase. This family
includes: Cholinephosphate cytidylyltransferase.
Glycerol-3-phosphate cytidylyltransferase.
Length = 148
Score = 35.5 bits (82), Expect = 0.022
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 22 VAIGNFDGIHLGHHLILEQAIKIANNSPITVL 53
+ G FD IHLGH +LEQA ++ + I +
Sbjct: 1 LFGGTFDPIHLGHLRLLEQAKELFDLDKIVGV 32
>gnl|CDD|185680 cd02165, NMNAT, Nicotinamide/nicotinate mononucleotide
adenylyltransferase. Nicotinamide/nicotinate
mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT).
NMNAT represents the primary bacterial and eukaryotic
adenylyltransferases for nicotinamide-nucleotide and
for the deamido form, nicotinate nucleotide. It is an
indispensable enzyme in the biosynthesis of NAD(+) and
NADP(+). Nicotinamide-nucleotide adenylyltransferase
synthesizes NAD via the salvage pathway, while
nicotinate-nucleotide adenylyltransferase synthesizes
the immediate precursor of NAD via the de novo pathway.
Human NMNAT displays unique dual substrate specificity
toward both NMN and NaMN, and can participate in both
de novo and salvage pathways of NAD synthesis.
Length = 192
Score = 32.6 bits (75), Expect = 0.14
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 25 GNFDGIHLGHHLILEQAIKIANNSP-ITVLSFNP 57
G+FD HLGH I E+A++ + + S NP
Sbjct: 6 GSFDPPHLGHLAIAEEALEELGLDRVLLLPSANP 39
>gnl|CDD|173915 cd02164, PPAT_CoAS, phosphopantetheine adenylyltransferase domain
of eukaryotic and archaeal bifunctional enzymes. The
PPAT domain of the bifunctional enzyme with PPAT and
DPCK functions. The final two steps of the CoA
biosynthesis pathway are catalyzed by
phosphopantetheine adenylyltransferase (PPAT) and
dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction
involves the reversible adenylation of
4'-phosphopantetheine to form 3'-dPCoA and PPi, and
DPCK catalyses phosphorylation of the 3'-hydroxy group
of the ribose moiety of dPCoA. In eukaryotes the two
enzymes are part of a large multienzyme complex .
Studies in Corynebacterium ammoniagenes suggested that
separate enzymes were present, and this was confirmed
through identification of the bacterial PPAT/CoAD.
Length = 143
Score = 30.7 bits (70), Expect = 0.57
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANN 47
V G FD +H GH ++L A +A
Sbjct: 2 VAVGGTFDRLHDGHKILLSVAFLLAGE 28
>gnl|CDD|31729 COG1540, COG1540, Uncharacterized proteins, homologs of lactam
utilization protein B [General function prediction
only].
Length = 252
Score = 30.2 bits (68), Expect = 0.84
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 144 GEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIHGEKIG 203
GE +G + DE +VSS+NI +A L R T+ +G IG
Sbjct: 11 GEGFGAWRMGDDE---ALLPLVSSANIACGF------HAGDPLTMRRTVRLAKENGVAIG 61
Query: 204 RTLGFPT------ANMQLSPDILLKEGVYAI 228
G+P M LSP+ L + +Y I
Sbjct: 62 AHPGYPDLVGFGRREMALSPEELYAQVLYQI 92
>gnl|CDD|31222 COG1019, COG1019, Predicted nucleotidyltransferase [General
function prediction only].
Length = 158
Score = 29.8 bits (67), Expect = 1.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLS 54
V G FD +H GH +LE A +I + I + S
Sbjct: 8 VAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTS 41
>gnl|CDD|31257 COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase
[Coenzyme metabolism].
Length = 197
Score = 29.5 bits (66), Expect = 1.1
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVL--SFNPHPRTIIQSSS 67
G+FD H GH LI E+A+ + L PH + +S+
Sbjct: 10 GSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHKKKKELASA 54
>gnl|CDD|37597 KOG2386, KOG2386, KOG2386, mRNA capping enzyme, guanylyltransferase
(alpha) subunit [RNA processing and modification].
Length = 393
Score = 29.5 bits (66), Expect = 1.4
Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 2/71 (2%)
Query: 251 VPNGPLLLESFIFD--FSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKI 308
+G I Y + F RP K +Y + K+
Sbjct: 131 CTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDIFPFKV 190
Query: 309 LESSYPLSERD 319
S P +R
Sbjct: 191 SCPSMPDWKRS 201
>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase. The
cytidylyltransferase family includes cholinephosphate
cytidylyltransferase (CCT), glycerol-3-phosphate
cytidylyltransferase, RafE and phosphoethanolamine
cytidylyltransferase (ECT). All enzymes catalyze the
transfer of a cytidylyl group from CTP to various
substrates.
Length = 136
Score = 28.8 bits (65), Expect = 2.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLS 54
V A G FD IH GH LE+A K+ + + V
Sbjct: 4 VYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVAR 37
>gnl|CDD|30960 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis,
outer membrane / Lipid metabolism].
Length = 140
Score = 28.7 bits (64), Expect = 2.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 21 VVAIGNFDGIHLGHHLILEQAIKIAN 46
V A G FD +H GH L QA K+ +
Sbjct: 4 VWADGTFDILHPGHIEFLRQAKKLGD 29
>gnl|CDD|173941 cd08182, HEPD, Hydroxyethylphosphoate dehydrogenase (HEPD)
catalyzes the reduction of phosphonoacetaldehyde (PnAA)
to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate
dehydrogenase (HEPD) catalyzes the reduction of
phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate
(HEP) with either NADH or NADPH as a cofactor. NADH is
the preferred cofactor. PnAA is a biosynthetic
intermediate for several phosphonates such as the
antibiotic fosfomycin, phosphinothricin tripeptide
(PTT), and 2-aminoethylphosphonate (AEP). This enzyme is
named PhpC in PTT biosynthesis pathway in Streptomyces
hygroscopicus and S. viridochromogenes. Members of this
family are only found in bacteria.
Length = 367
Score = 28.4 bits (64), Expect = 2.8
Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 168 SNIRTALTKGHVLNAAHLLGYRFTIESDVIHGEKIGRTLGF 208
SN RT AAH + Y T V HG TL
Sbjct: 248 SNTRTT--------AAHAISYPLTSRYGVPHGLACALTLPA 280
>gnl|CDD|37702 KOG2491, KOG2491, KOG2491, Nuclear matrix protein [Nuclear
structure].
Length = 674
Score = 28.1 bits (62), Expect = 3.1
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 279 FDYLRPEIKFKDI-----EKLKIYMGEDEKKARKILESSYPLSER 318
F YL+ + KFK ++ +++ E EK+ K+LE + P +R
Sbjct: 331 FQYLKAQSKFKSSKYVLSDEQALWLKECEKRVYKLLEETPPDGKR 375
>gnl|CDD|30392 COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and
related decarboxylases [Coenzyme metabolism].
Length = 477
Score = 28.3 bits (63), Expect = 3.2
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 2 HVFHN---IEINQSLPNHLKGGVVAIGNFDGIHLGHHLIL-EQAIKIANNSPIT---VLS 54
FH + I + P H K ++A + +I+ + I + + + +
Sbjct: 346 GCFHLLAVVSIKKRYPGHAKRVMLAAWGAGQLSYTKFVIVVDDDIDVRDWNEVIWAIATR 405
Query: 55 FNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIR 92
F+P +I ++P +L P S + + K+G A +
Sbjct: 406 FDPDRDLVIIPNTPGDSLDPASPKSGLGSKLGIDATKK 443
>gnl|CDD|37514 KOG2303, KOG2303, KOG2303, Predicted NAD synthase, contains CN
hydrolase domain [Coenzyme transport and metabolism,
General function prediction only].
Length = 706
Score = 28.0 bits (62), Expect = 3.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 72 LSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQF 107
LSP + EK+ + ++ R+K T+ T +Y AE +
Sbjct: 627 LSPRQVAEKVKRFFSYYSINRHKMTVLTPSYHAENY 662
>gnl|CDD|31013 COG0669, CoaD, Phosphopantetheine adenylyltransferase [Coenzyme
metabolism].
Length = 159
Score = 27.4 bits (61), Expect = 5.7
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTL 72
G+FD I GH I+++A + + + V NP + P+F+L
Sbjct: 9 GSFDPITNGHLDIIKRASALFDEVIVAVA-INPSKK-------PLFSL 48
>gnl|CDD|146404 pfam03746, LamB_YcsF, LamB/YcsF family. This family includes LamB.
The lam locus of Aspergillus nidulans consists of two
divergently transcribed genes, lamA and lamB, involved
in the utilisation of lactams such as 2-pyrrolidinone.
Both genes are under the control of the positive
regulatory gene amdR and are subject to carbon and
nitrogen metabolite repression. The exact molecular
function of the proteins in this family is unknown.
Length = 242
Score = 27.3 bits (61), Expect = 5.8
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 19/93 (20%)
Query: 144 GEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG--HVLNAAHLLGYRFTIESDVIHGEK 201
GE +G T+ DE +V+S+NI G V+ T+ HG +
Sbjct: 9 GESFGAWTMGDDE---ALLPLVTSANIACGFHAGDPSVMRR--------TVRLAAEHGVR 57
Query: 202 IGRTLGFPT------ANMQLSPDILLKEGVYAI 228
IG G+P M LS + L +Y I
Sbjct: 58 IGAHPGYPDLVGFGRRAMALSAEELYALVLYQI 90
>gnl|CDD|147039 pfam04683, Proteasom_Rpn13, Proteasome complex subunit Rpn13
ubiquitin receptor. This family was thought originally
to be involved in cell-adhesion, but the members are now
known to be proteasome subunit Rpn13, a novel ubiquitin
receptor. The 26S proteasome is a huge macromolecular
protein-degradation machine consisting of a
proteolytically active 20S core, in the form of four
disc-like proteins, and one or two 19S regulatory
particles. The regulatory particle(s) sit on the top and
or bottom of the core, de-ubiquitinate the substrate
peptides, unfold them and guide them into the narrow
channel through the centre of the core. Rpn13 and its
homologues dock onto the regulatory particle through the
N-terminal region which binds Rpn2. The C-terminal part
of the domain binds de-ubiquitinating enzyme Uch37/UCHL5
and enhances its isopeptidase activity. Rpn13 binds
ubiquitin via a conserved amino-terminal region called
the pleckstrin-like receptor for ubiquitin, termed Pru,
domain. The domain forms two contiguous anti-parallel
beta-sheets with a configuration similar to the
pleckstrin-homology domain (PHD) fold. Rpn13's ability
to bind ubiquitin and the proteasome subunit Rpn2/S1
simultaneously supports evidence of its role as a
ubiquitin receptor. Finally, when complexed to
di-ubiquitin, via the Pru, and Uch37 via the C-terminal
part, it frees up the distal ubiquitin for
de-ubiquitination by the Uch37.
Length = 263
Score = 27.3 bits (61), Expect = 6.1
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 20/97 (20%)
Query: 229 RFRTQDQTSYSGVANFGRNPTMVPNGPLLLESFIFDFSQEIY---------GQRCTVSFF 279
+ + Q S + A P P+ L D Q I Q TV
Sbjct: 134 QSGSLAQPSITSAAEGSSTPAS-AANPIQLS----DALQNILANLSADGAGRQGPTVDLA 188
Query: 280 DYLRPEIK---FKD---IEKLKIYMGEDEKKARKILE 310
+ L PE+ +D E+L ++ E + A +LE
Sbjct: 189 EILTPELLAPLLRDEEVQERLMEHLPEGHQNAEDLLE 225
>gnl|CDD|173927 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like (DHQ-like) and
iron-containing alcohol dehydrogenases (Fe-ADH).
Dehydroquinate synthase-like. This superfamily divides
into two subgroups: the dehydroquinate synthase-like,
and a large metal-containing alcohol dehydrogenases
(ADH), known as iron-containing alcohol dehydrogenases.
Dehydroquinate synthase (DHQS) catalyzes the conversion
of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to
dehydroquinate (DHQ) in the second step of the shikimate
pathway. This pathway involves seven sequential
enzymatic steps in the conversion of erythrose
4-phosphate and phosphoenolpyruvate into chorismate for
subsequent synthesis of aromatic compounds.
Dehydroquinate synthase-like group includes
dehydroquinate synthase, 2-deoxy-scyllo-inosose
synthase, and 2-epi-5-epi-valiolone synthase. The
alcohol dehydrogenases in this superfamily contain a
dehydroquinate synthase-like protein structural fold and
mostly contain iron. They are distinct from other
alcohol dehydrogenases which contains different protein
domains. There are several distinct families of alcohol
dehydrogenases: Zinc-containing long-chain alcohol
dehydrogenases; insect-type, or short-chain alcohol
dehydrogenases; iron-containing alcohol dehydrogenases,
and others. The iron-containing family has a Rossmann
fold-like topology that resembles the fold of the
zinc-dependent alcohol dehydrogenases, but lacks
sequence homology, and differs in strand arrangement.
ADH catalyzes the reversible oxidation of alcohol to
acetaldehyde with the simultaneous reduction of NAD(P)+
to NAD(P)H.
Length = 332
Score = 27.4 bits (61), Expect = 6.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 180 LNAAHLLGYRFTIESDVIHGEKIG 203
L AAH +G+ T + HGE +
Sbjct: 233 LGAAHAIGHALTALEGIPHGEAVA 256
>gnl|CDD|37142 KOG1931, KOG1931, KOG1931, Putative transmembrane protein [General
function prediction only].
Length = 1156
Score = 26.5 bits (58), Expect = 9.4
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 259 ESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILESSYPLSER 318
+F+F ++ ++ + E+ + E L ++ + +LESS PL
Sbjct: 292 YFTLFEFRLYLFERQTLLLLKLNRPFEVASRAYELLFSFL-----QELSLLESSVPLGAL 346
Query: 319 D 319
Sbjct: 347 K 347
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.139 0.404
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,970,324
Number of extensions: 212126
Number of successful extensions: 520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 28
Length of query: 324
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,232,491
Effective search space: 973472930
Effective search space used: 973472930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)