RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62] (324 letters) >gnl|CDD|180171 PRK05627, PRK05627, bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed. Length = 305 Score = 329 bits (845), Expect = 9e-91 Identities = 121/311 (38%), Positives = 179/311 (57%), Gaps = 12/311 (3%) Query: 1 MHVFHNIEINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPH 58 + HNI V+ IGNFDG+H GH +L +A +IA P V++F PH Sbjct: 3 IRGLHNIPQP-------PDCVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPH 55 Query: 59 PRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEV 118 PR + L+P + ++L ++G ++ F E A SAE+FI+ +LV+ L Sbjct: 56 PREVFAPDKAPARLTPLRDKAELLAELGVDYVLVLPFDEEFAKLSAEEFIEDLLVKGLNA 115 Query: 119 KTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGH 178 K V+ G FRFGK RAGD +L++ G+++GF + E++ + + VSS+ IR AL +G Sbjct: 116 KHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKED-GERVSSTAIRQALAEGD 174 Query: 179 VLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSY 238 + A LLG ++I V+HG+K+GRTLGFPTAN+ L +L +GVYA+R + + Y Sbjct: 175 LELANKLLGRPYSISGRVVHGQKLGRTLGFPTANLPLPDRVLPADGVYAVRVKVDGKP-Y 233 Query: 239 SGVANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYM 298 GVAN G PT V G LLE + DF+ ++YG+ TV F LR E KF +++LK + Sbjct: 234 PGVANIGTRPT-VDGGRQLLEVHLLDFNGDLYGEHITVEFLKKLRDEQKFDSLDELKAQI 292 Query: 299 GEDEKKARKIL 309 +D + AR L Sbjct: 293 AKDIETARAFL 303 >gnl|CDD|161699 TIGR00083, ribF, riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase). Length = 288 Score = 216 bits (553), Expect = 5e-57 Identities = 110/292 (37%), Positives = 156/292 (53%), Gaps = 6/292 (2%) Query: 21 VVAIGNFDGIHLGHHLILEQAIKIAN--NSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQ 78 +AIG FDG+HLGH +L++ +IA P VL F PHP + L+P + Sbjct: 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPA-LTPLEDK 59 Query: 79 EKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRG 138 + L+ G L+ F E AN SA QFI +++V+ L VK ++ G FRFG DR GD Sbjct: 60 ARQLQIKGVEQLLVVVFDEEFANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFL 119 Query: 139 ILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIH 198 +LQ G F I + + +SSS IR AL G + A LLG + I VIH Sbjct: 120 LLQLFGNTTIFCV--IVKQLFCQDIRISSSAIRQALKNGDLELANKLLGRPYFICGTVIH 177 Query: 199 GEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSYSGVANFGRNPTMVPNGPLLL 258 G+K+GRTLGFPTAN++L +L +G Y + + Y GV N G PT + ++ Sbjct: 178 GQKLGRTLGFPTANIKLKNQVLPLKGGYYVVVVLLNGEPYPGVGNIGNRPTFIGQQL-VI 236 Query: 259 ESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILE 310 E + DFS E+YGQ V+ +RPE KF +++LK + +D +A+K Sbjct: 237 EVHLLDFSGELYGQEIKVTLVKKIRPEQKFSSLDELKNQIQQDILQAKKWFN 288 >gnl|CDD|115244 pfam06574, FAD_syn, FAD synthetase. This family corresponds to the N terminal domain of the bifunctional enzyme riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin 5'-phospho transferase and ATP:FMN-adenylyltransferase activity. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD. This domain is thought to have the flavin mononucleotide (FMN) adenylyltransferase activity. Length = 158 Score = 150 bits (380), Expect = 7e-37 Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 3/159 (1%) Query: 13 LPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPHPRTIIQSSSPIF 70 LP +G VV IGNFDG+HLGH ++ A +IA P V++F PHPR + Sbjct: 1 LPEDPRGSVVTIGNFDGVHLGHQALIAHAKEIARELGLPSVVVTFEPHPREVFAPDKAPE 60 Query: 71 TLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFG 130 L+ + ++L ++G L+ F E A SAE+FI+ +LV+ L K V+ G FRFG Sbjct: 61 RLTTLREKIELLAELGVDRLLVLPFDKEFAKLSAEEFIENILVKGLGAKHVVVGFDFRFG 120 Query: 131 KDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSN 169 K RAGD +L++ G KYGF + + + + +SS+ Sbjct: 121 KGRAGDVELLKELGAKYGFEVTVVPPVTLD-GEKISSTR 158 >gnl|CDD|180859 PRK07143, PRK07143, hypothetical protein; Provisional. Length = 279 Score = 62.7 bits (153), Expect = 1e-10 Identities = 64/291 (21%), Positives = 118/291 (40%), Gaps = 43/291 (14%) Query: 24 IGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILE 83 +G F+ HLGH + ++A + +N I ++ F +P + ++++ F+ +Q L Sbjct: 21 LGGFESFHLGHLELFKKAKE--SNDEIVIVIFK-NPENLPKNTNKKFSDLNSRLQT--LA 75 Query: 84 KMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKR 143 +GF +I F E N S FI+K+ +V + G FRFGK+ + + L+ Sbjct: 76 NLGFKNIILLDFNEELQNLSGNDFIEKLTK--NQVSFFVVGKDFRFGKNASWNADDLK-- 131 Query: 144 GEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIHGEKIG 203 +Y + ++ L+ N+ +I S+S ++ + G + LL Y ++I + Sbjct: 132 --EYFPNVHIVEILKINQQKI-STSLLKEFIEFGDIELLNSLLLYNYSISITINK----- 183 Query: 204 RTLGFPTANMQLSPDIL-LKEGVYAIRFRTQDQTSYSGV--ANFGRNPTMVPNGPLLLES 260 +I+ L G+Y + Y G+ NF N ++ Sbjct: 184 ------NFEFTYPQNIIKLHAGIYLAYV-VINNFKYHGILKINF--------NNKNKIKF 228 Query: 261 FIFDFSQEIYGQRCTVSFFDYLR-------PEIKFKDIEKLKIYMGEDEKK 304 F FD Y Q + +R I DIE K + ++K Sbjct: 229 FDFDLIINKY-QEIFIEIVKEIRIISSNEDNNILNDDIEIAKKFFLNNKKN 278 >gnl|CDD|178528 PLN02940, PLN02940, riboflavin kinase. Length = 382 Score = 40.6 bits (95), Expect = 6e-04 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 7/121 (5%) Query: 196 VIHGEKIG-RTLGFPTANMQLS--PDILLKE--GVYAIRFRTQDQTSYSGVANFGRNPTM 250 VI G G + LG PTAN+ D+L + GVY + Y V + G NP Sbjct: 245 VIKGFGRGSKVLGIPTANLSTENYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYF 304 Query: 251 VPNGPLLLESFIF-DFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKIL 309 N +E ++ DF ++ YG+ + Y+RPE F +E L + ED + A K L Sbjct: 305 -NNTEKTIEPWLLHDFGEDFYGEELRLVIVGYIRPEANFPSLESLIAKIHEDRRIAEKAL 363 Query: 310 E 310 + Sbjct: 364 D 364 >gnl|CDD|161722 TIGR00125, cyt_tran_rel, cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Length = 66 Score = 36.9 bits (86), Expect = 0.007 Identities = 11/26 (42%), Positives = 18/26 (69%) Query: 21 VVAIGNFDGIHLGHHLILEQAIKIAN 46 V+ +G FD HLGH +LE+A ++ + Sbjct: 2 VIFVGTFDPFHLGHLDLLERAKELFD 27 >gnl|CDD|177429 PHA02604, rI.-1, hypothetical protein; Provisional. Length = 126 Score = 30.5 bits (69), Expect = 0.59 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 6/76 (7%) Query: 24 IGNFDGIHLGHH-LILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKIL 82 I F ++G + ++ A+ L ++Q + I+ P ++Q + Sbjct: 56 IDKFAEQYIGISGRKYKPSLPSAS-----ELDTIAFLDELLQEAEEIYKELPSALQSTLD 110 Query: 83 EKMGFSALIRYKFTLE 98 + G +YK TLE Sbjct: 111 DITGLCYQTKYKLTLE 126 >gnl|CDD|178839 PRK00071, nadD, nicotinic acid mononucleotide adenylyltransferase; Provisional. Length = 203 Score = 30.2 bits (69), Expect = 0.78 Identities = 9/20 (45%), Positives = 11/20 (55%) Query: 25 GNFDGIHLGHHLILEQAIKI 44 G FD H GH I E+A + Sbjct: 11 GTFDPPHYGHLAIAEEAAER 30 >gnl|CDD|166029 PLN02388, PLN02388, phosphopantetheine adenylyltransferase. Length = 177 Score = 29.1 bits (65), Expect = 1.7 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 10 NQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIANN 47 S PN G VV G FD +H GH L L+ A ++A + Sbjct: 12 KLSPPNSY-GAVVLGGTFDRLHDGHRLFLKAAAELARD 48 >gnl|CDD|161899 TIGR00482, TIGR00482, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. Length = 193 Score = 28.4 bits (64), Expect = 2.4 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVL-SFNPHPRTIIQSSS 67 G+FD IH GH L+ E+A+ + + + + NP + +++S Sbjct: 4 GSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKTYEAAS 47 >gnl|CDD|180860 PRK07152, nadD, putative nicotinate-nucleotide adenylyltransferase; Validated. Length = 342 Score = 27.6 bits (62), Expect = 4.0 Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 25 GNFDGIHLGHHLILEQAIKIAN 46 G+FD IH GH I ++AIK Sbjct: 8 GSFDPIHKGHINIAKKAIKKLK 29 >gnl|CDD|183565 PRK12511, PRK12511, RNA polymerase sigma factor; Provisional. Length = 182 Score = 27.4 bits (61), Expect = 5.2 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 15/76 (19%) Query: 89 ALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKD-RAGDRGILQKRGEKY 147 L RY +L + AE + LV LE + FR G + R IL Sbjct: 16 PLRRYARSLTRDSAEAEDLVHDALVRALERRA-----SFRSGGNLRTWLMSIL------- 63 Query: 148 GFHTVFIDELRNNKSQ 163 H FIDELR + + Sbjct: 64 --HNAFIDELRRRRVE 77 >gnl|CDD|138914 PRK12370, PRK12370, invasion protein regulator; Provisional. Length = 553 Score = 27.1 bits (60), Expect = 5.8 Identities = 12/52 (23%), Positives = 31/52 (59%), Gaps = 7/52 (13%) Query: 9 INQSLPNH-LKGGVVAIGN-----FDGIHL-GHHLILEQAIKIANNSPITVL 53 ++Q P++ + G ++ GN + + + G+HL+ +++IK+ + P ++L Sbjct: 177 MDQLRPDYYISGQMIPDGNDNIVQIEIVRVKGYHLLHQESIKLIEHQPASLL 228 >gnl|CDD|184424 PRK13964, coaD, phosphopantetheine adenylyltransferase; Provisional. Length = 140 Score = 27.0 bits (60), Expect = 6.6 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNP 57 G+FD H GH IL++A+K+ + + V+S NP Sbjct: 8 GSFDPFHKGHLNILKKALKLFDKVYV-VVSINP 39 >gnl|CDD|102532 PRK06755, PRK06755, hypothetical protein; Validated. Length = 209 Score = 26.9 bits (59), Expect = 7.6 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 268 EIYGQRCTVSFFDYLRPEIKFKD-IEKLKIYMGEDEKKARKILESSYP 314 E+YG+ V+F + K+ I ++ I + EDEKK +LE++ P Sbjct: 108 ELYGEEGEVTFDKRSVERVFGKEGITEMTIPIVEDEKKFADLLENNVP 155 >gnl|CDD|181352 PRK08285, cobH, precorrin-8X methylmutase; Reviewed. Length = 208 Score = 26.8 bits (60), Expect = 8.0 Identities = 8/11 (72%), Positives = 8/11 (72%) Query: 16 HLKGGVVAIGN 26 L G VVAIGN Sbjct: 125 RLAGSVVAIGN 135 >gnl|CDD|162396 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis. Length = 155 Score = 26.9 bits (60), Expect = 8.1 Identities = 7/20 (35%), Positives = 13/20 (65%) Query: 25 GNFDGIHLGHHLILEQAIKI 44 G+FD + GH I+++A + Sbjct: 6 GSFDPVTNGHLDIIKRAAAL 25 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.139 0.404 Gapped Lambda K H 0.267 0.0748 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,362,170 Number of extensions: 346508 Number of successful extensions: 724 Number of sequences better than 10.0: 1 Number of HSP's gapped: 713 Number of HSP's successfully gapped: 28 Length of query: 324 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 230 Effective length of database: 3,963,321 Effective search space: 911563830 Effective search space used: 911563830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (25.7 bits)