RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780846|ref|YP_003065259.1| bifunctional riboflavin
kinase/FMN adenylyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
         (324 letters)



>gnl|CDD|180171 PRK05627, PRK05627, bifunctional riboflavin kinase/FMN
           adenylyltransferase; Reviewed.
          Length = 305

 Score =  329 bits (845), Expect = 9e-91
 Identities = 121/311 (38%), Positives = 179/311 (57%), Gaps = 12/311 (3%)

Query: 1   MHVFHNIEINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPH 58
           +   HNI             V+ IGNFDG+H GH  +L +A +IA     P  V++F PH
Sbjct: 3   IRGLHNIPQP-------PDCVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPH 55

Query: 59  PRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEV 118
           PR +         L+P   + ++L ++G   ++   F  E A  SAE+FI+ +LV+ L  
Sbjct: 56  PREVFAPDKAPARLTPLRDKAELLAELGVDYVLVLPFDEEFAKLSAEEFIEDLLVKGLNA 115

Query: 119 KTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGH 178
           K V+ G  FRFGK RAGD  +L++ G+++GF    + E++ +  + VSS+ IR AL +G 
Sbjct: 116 KHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKED-GERVSSTAIRQALAEGD 174

Query: 179 VLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSY 238
           +  A  LLG  ++I   V+HG+K+GRTLGFPTAN+ L   +L  +GVYA+R +   +  Y
Sbjct: 175 LELANKLLGRPYSISGRVVHGQKLGRTLGFPTANLPLPDRVLPADGVYAVRVKVDGKP-Y 233

Query: 239 SGVANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYM 298
            GVAN G  PT V  G  LLE  + DF+ ++YG+  TV F   LR E KF  +++LK  +
Sbjct: 234 PGVANIGTRPT-VDGGRQLLEVHLLDFNGDLYGEHITVEFLKKLRDEQKFDSLDELKAQI 292

Query: 299 GEDEKKARKIL 309
            +D + AR  L
Sbjct: 293 AKDIETARAFL 303


>gnl|CDD|161699 TIGR00083, ribF, riboflavin kinase/FMN adenylyltransferase.
           multifunctional enzyme: riboflavin kinase (EC 2.7.1.26)
           (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2)
           (FAD pyrophosphorylase) (FAD synthetase).
          Length = 288

 Score =  216 bits (553), Expect = 5e-57
 Identities = 110/292 (37%), Positives = 156/292 (53%), Gaps = 6/292 (2%)

Query: 21  VVAIGNFDGIHLGHHLILEQAIKIAN--NSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQ 78
            +AIG FDG+HLGH  +L++  +IA     P  VL F PHP       +    L+P   +
Sbjct: 1   SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPA-LTPLEDK 59

Query: 79  EKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRG 138
            + L+  G   L+   F  E AN SA QFI +++V+ L VK ++ G  FRFG DR GD  
Sbjct: 60  ARQLQIKGVEQLLVVVFDEEFANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFL 119

Query: 139 ILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIH 198
           +LQ  G    F    I +    +   +SSS IR AL  G +  A  LLG  + I   VIH
Sbjct: 120 LLQLFGNTTIFCV--IVKQLFCQDIRISSSAIRQALKNGDLELANKLLGRPYFICGTVIH 177

Query: 199 GEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSYSGVANFGRNPTMVPNGPLLL 258
           G+K+GRTLGFPTAN++L   +L  +G Y +     +   Y GV N G  PT +     ++
Sbjct: 178 GQKLGRTLGFPTANIKLKNQVLPLKGGYYVVVVLLNGEPYPGVGNIGNRPTFIGQQL-VI 236

Query: 259 ESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILE 310
           E  + DFS E+YGQ   V+    +RPE KF  +++LK  + +D  +A+K   
Sbjct: 237 EVHLLDFSGELYGQEIKVTLVKKIRPEQKFSSLDELKNQIQQDILQAKKWFN 288


>gnl|CDD|115244 pfam06574, FAD_syn, FAD synthetase.  This family corresponds to the
           N terminal domain of the bifunctional enzyme riboflavin
           kinase / FAD synthetase. These enzymes have both
           ATP:riboflavin 5'-phospho transferase and
           ATP:FMN-adenylyltransferase activity. They catalyse the
           5'-phosphorylation of riboflavin to FMN and the
           adenylylation of FMN to FAD. This domain is thought to
           have the flavin mononucleotide (FMN) adenylyltransferase
           activity.
          Length = 158

 Score =  150 bits (380), Expect = 7e-37
 Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 3/159 (1%)

Query: 13  LPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPHPRTIIQSSSPIF 70
           LP   +G VV IGNFDG+HLGH  ++  A +IA     P  V++F PHPR +        
Sbjct: 1   LPEDPRGSVVTIGNFDGVHLGHQALIAHAKEIARELGLPSVVVTFEPHPREVFAPDKAPE 60

Query: 71  TLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFG 130
            L+    + ++L ++G   L+   F  E A  SAE+FI+ +LV+ L  K V+ G  FRFG
Sbjct: 61  RLTTLREKIELLAELGVDRLLVLPFDKEFAKLSAEEFIENILVKGLGAKHVVVGFDFRFG 120

Query: 131 KDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSN 169
           K RAGD  +L++ G KYGF    +  +  +  + +SS+ 
Sbjct: 121 KGRAGDVELLKELGAKYGFEVTVVPPVTLD-GEKISSTR 158


>gnl|CDD|180859 PRK07143, PRK07143, hypothetical protein; Provisional.
          Length = 279

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 64/291 (21%), Positives = 118/291 (40%), Gaps = 43/291 (14%)

Query: 24  IGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILE 83
           +G F+  HLGH  + ++A +  +N  I ++ F  +P  + ++++  F+     +Q   L 
Sbjct: 21  LGGFESFHLGHLELFKKAKE--SNDEIVIVIFK-NPENLPKNTNKKFSDLNSRLQT--LA 75

Query: 84  KMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKR 143
            +GF  +I   F  E  N S   FI+K+     +V   + G  FRFGK+ + +   L+  
Sbjct: 76  NLGFKNIILLDFNEELQNLSGNDFIEKLTK--NQVSFFVVGKDFRFGKNASWNADDLK-- 131

Query: 144 GEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIHGEKIG 203
             +Y  +   ++ L+ N+ +I S+S ++  +  G +     LL Y ++I   +       
Sbjct: 132 --EYFPNVHIVEILKINQQKI-STSLLKEFIEFGDIELLNSLLLYNYSISITINK----- 183

Query: 204 RTLGFPTANMQLSPDIL-LKEGVYAIRFRTQDQTSYSGV--ANFGRNPTMVPNGPLLLES 260
                         +I+ L  G+Y       +   Y G+   NF        N    ++ 
Sbjct: 184 ------NFEFTYPQNIIKLHAGIYLAYV-VINNFKYHGILKINF--------NNKNKIKF 228

Query: 261 FIFDFSQEIYGQRCTVSFFDYLR-------PEIKFKDIEKLKIYMGEDEKK 304
           F FD     Y Q   +     +R         I   DIE  K +   ++K 
Sbjct: 229 FDFDLIINKY-QEIFIEIVKEIRIISSNEDNNILNDDIEIAKKFFLNNKKN 278


>gnl|CDD|178528 PLN02940, PLN02940, riboflavin kinase.
          Length = 382

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 7/121 (5%)

Query: 196 VIHGEKIG-RTLGFPTANMQLS--PDILLKE--GVYAIRFRTQDQTSYSGVANFGRNPTM 250
           VI G   G + LG PTAN+      D+L +   GVY        +  Y  V + G NP  
Sbjct: 245 VIKGFGRGSKVLGIPTANLSTENYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYF 304

Query: 251 VPNGPLLLESFIF-DFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKIL 309
             N    +E ++  DF ++ YG+   +    Y+RPE  F  +E L   + ED + A K L
Sbjct: 305 -NNTEKTIEPWLLHDFGEDFYGEELRLVIVGYIRPEANFPSLESLIAKIHEDRRIAEKAL 363

Query: 310 E 310
           +
Sbjct: 364 D 364


>gnl|CDD|161722 TIGR00125, cyt_tran_rel, cytidyltransferase-related domain.
          Protein families that contain at least one copy of this
          domain include citrate lyase ligase,
          pantoate-beta-alanine ligase, glycerol-3-phosphate
          cytidyltransferase, ADP-heptose synthase,
          phosphocholine cytidylyltransferase, lipopolysaccharide
          core biosynthesis protein KdtB, the bifunctional
          protein NadR, and a number whose function is unknown.
          Many of these proteins are known to use CTP or ATP and
          release pyrophosphate.
          Length = 66

 Score = 36.9 bits (86), Expect = 0.007
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 21 VVAIGNFDGIHLGHHLILEQAIKIAN 46
          V+ +G FD  HLGH  +LE+A ++ +
Sbjct: 2  VIFVGTFDPFHLGHLDLLERAKELFD 27


>gnl|CDD|177429 PHA02604, rI.-1, hypothetical protein; Provisional.
          Length = 126

 Score = 30.5 bits (69), Expect = 0.59
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 24  IGNFDGIHLGHH-LILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKIL 82
           I  F   ++G      + ++  A+      L        ++Q +  I+   P ++Q  + 
Sbjct: 56  IDKFAEQYIGISGRKYKPSLPSAS-----ELDTIAFLDELLQEAEEIYKELPSALQSTLD 110

Query: 83  EKMGFSALIRYKFTLE 98
           +  G     +YK TLE
Sbjct: 111 DITGLCYQTKYKLTLE 126


>gnl|CDD|178839 PRK00071, nadD, nicotinic acid mononucleotide
          adenylyltransferase; Provisional.
          Length = 203

 Score = 30.2 bits (69), Expect = 0.78
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 25 GNFDGIHLGHHLILEQAIKI 44
          G FD  H GH  I E+A + 
Sbjct: 11 GTFDPPHYGHLAIAEEAAER 30


>gnl|CDD|166029 PLN02388, PLN02388, phosphopantetheine adenylyltransferase.
          Length = 177

 Score = 29.1 bits (65), Expect = 1.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 10 NQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIANN 47
            S PN   G VV  G FD +H GH L L+ A ++A +
Sbjct: 12 KLSPPNSY-GAVVLGGTFDRLHDGHRLFLKAAAELARD 48


>gnl|CDD|161899 TIGR00482, TIGR00482, nicotinate (nicotinamide) nucleotide
          adenylyltransferase.  This model represents the
          predominant bacterial/eukaryotic adenylyltransferase
          for nicotinamide-nucleotide, its deamido form
          nicotinate nucleotide, or both. The first activity,
          nicotinamide-nucleotide adenylyltransferase (EC
          2.7.7.1), synthesizes NAD by the salvage pathway, while
          the second, nicotinate-nucleotide adenylyltransferase
          (EC 2.7.7.18) synthesizes the immediate precursor of
          NAD by the de novo pathway. In E. coli, NadD activity
          is biased toward the de novo pathway while salvage
          activity is channeled through the multifunctional NadR
          protein, but this division of labor may be exceptional.
          The given name of this model, nicotinate (nicotinamide)
          nucleotide adenylyltransferase, reflects the lack of
          absolute specificity with respect to substrate
          amidation state in most species.
          Length = 193

 Score = 28.4 bits (64), Expect = 2.4
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVL-SFNPHPRTIIQSSS 67
          G+FD IH GH L+ E+A+   +   +  + + NP  +   +++S
Sbjct: 4  GSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKTYEAAS 47


>gnl|CDD|180860 PRK07152, nadD, putative nicotinate-nucleotide
          adenylyltransferase; Validated.
          Length = 342

 Score = 27.6 bits (62), Expect = 4.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 25 GNFDGIHLGHHLILEQAIKIAN 46
          G+FD IH GH  I ++AIK   
Sbjct: 8  GSFDPIHKGHINIAKKAIKKLK 29


>gnl|CDD|183565 PRK12511, PRK12511, RNA polymerase sigma factor; Provisional.
          Length = 182

 Score = 27.4 bits (61), Expect = 5.2
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 15/76 (19%)

Query: 89  ALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKD-RAGDRGILQKRGEKY 147
            L RY  +L   +  AE  +   LV  LE +       FR G + R     IL       
Sbjct: 16  PLRRYARSLTRDSAEAEDLVHDALVRALERRA-----SFRSGGNLRTWLMSIL------- 63

Query: 148 GFHTVFIDELRNNKSQ 163
             H  FIDELR  + +
Sbjct: 64  --HNAFIDELRRRRVE 77


>gnl|CDD|138914 PRK12370, PRK12370, invasion protein regulator; Provisional.
          Length = 553

 Score = 27.1 bits (60), Expect = 5.8
 Identities = 12/52 (23%), Positives = 31/52 (59%), Gaps = 7/52 (13%)

Query: 9   INQSLPNH-LKGGVVAIGN-----FDGIHL-GHHLILEQAIKIANNSPITVL 53
           ++Q  P++ + G ++  GN      + + + G+HL+ +++IK+  + P ++L
Sbjct: 177 MDQLRPDYYISGQMIPDGNDNIVQIEIVRVKGYHLLHQESIKLIEHQPASLL 228


>gnl|CDD|184424 PRK13964, coaD, phosphopantetheine adenylyltransferase;
          Provisional.
          Length = 140

 Score = 27.0 bits (60), Expect = 6.6
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNP 57
          G+FD  H GH  IL++A+K+ +   + V+S NP
Sbjct: 8  GSFDPFHKGHLNILKKALKLFDKVYV-VVSINP 39


>gnl|CDD|102532 PRK06755, PRK06755, hypothetical protein; Validated.
          Length = 209

 Score = 26.9 bits (59), Expect = 7.6
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 268 EIYGQRCTVSFFDYLRPEIKFKD-IEKLKIYMGEDEKKARKILESSYP 314
           E+YG+   V+F       +  K+ I ++ I + EDEKK   +LE++ P
Sbjct: 108 ELYGEEGEVTFDKRSVERVFGKEGITEMTIPIVEDEKKFADLLENNVP 155


>gnl|CDD|181352 PRK08285, cobH, precorrin-8X methylmutase; Reviewed.
          Length = 208

 Score = 26.8 bits (60), Expect = 8.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 16  HLKGGVVAIGN 26
            L G VVAIGN
Sbjct: 125 RLAGSVVAIGN 135


>gnl|CDD|162396 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate
          adenylyltransferase, bacterial.  This model describes
          pantetheine-phosphate adenylyltransferase, the
          penultimate enzyme of coenzyme A (CoA) biosynthesis in
          bacteria. It does not show any strong homology to
          eukaryotic enzymes of coenzyme A biosynthesis. This
          protein was previously designated KdtB and postulated
          (because of cytidyltransferase homology and proximity
          to kdtA) to be an enzyme of LPS biosynthesis, a
          cytidyltransferase for 3-deoxy-D-manno-2-octulosonic
          acid. However, no activity toward that compound was
          found with either CTP or ATP. The phylogenetic
          distribution of this enzyme is more consistent with
          coenzyme A biosynthesis than with LPS biosynthesis.
          Length = 155

 Score = 26.9 bits (60), Expect = 8.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 25 GNFDGIHLGHHLILEQAIKI 44
          G+FD +  GH  I+++A  +
Sbjct: 6  GSFDPVTNGHLDIIKRAAAL 25


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0748    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,362,170
Number of extensions: 346508
Number of successful extensions: 724
Number of sequences better than 10.0: 1
Number of HSP's gapped: 713
Number of HSP's successfully gapped: 28
Length of query: 324
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 230
Effective length of database: 3,963,321
Effective search space: 911563830
Effective search space used: 911563830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)