RPSBLAST alignment of GI: 254780846 and protein with PDBid: 3glv
>3glv_A Lipopolysaccharide core biosynthesis protein; structural genomics, PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Length = 143
Score = 40.8 bits (94), Expect = 4e-04
Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 23/156 (14%)
Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK 80
V+A G FD +HLGH L+++ K+ + + V + I ++
Sbjct: 5 VMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNG-----------KIPIFDE 53
Query: 81 ILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGIL 140
S L + + + +V + + + G D+ D L
Sbjct: 54 NSRLALISELKVVDRAILGHEGDMMKTVIEVKPDIITL-----------GYDQKFDEAEL 102
Query: 141 QKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTK 176
Q + K G + + + Q+ SSS++R + +
Sbjct: 103 QSKINKLGITVKIVRISKYDG-QLNSSSSVRKKIME 137