RPSBLAST alignment of GI: 254780846 and protein with PDBid: 3op1
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae} Length = 308
Score = 229 bits (584), Expect = 8e-61
Identities = 86/295 (29%), Positives = 143/295 (48%), Gaps = 13/295 (4%)
Query: 18 KGGVVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPHPRTIIQSSSP--IFTLS 73
VV +G FDGIH GH + A K A + PI V++FN P+ ++ P +
Sbjct: 20 SDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHIL 79
Query: 74 PPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDR 133
P+ +E+ L++ G L F+ + A+ +A++F ++ + K ++ G + FG D+
Sbjct: 80 NPAERERKLKREGVEELYLLDFSSQFASLTAQEF-FATYIKAMNAKIIVAGFDYTFGSDK 138
Query: 134 AGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIE 193
+ + + + + + K +I SS+ IR A+ G+V A LLG
Sbjct: 139 KTAEDL----KNYFDGEVIIVPPVEDEKGKI-SSTRIRQAILDGNVKEAGKLLGAPLPSR 193
Query: 194 SDVIHGEKIGRTLGFPTANMQLSPDILL-KEGVYAIRFRTQDQTSYSGVANFGRNPTMVP 252
V+HG GRT+G+PTAN+ L + +GVY + Q Q +A+ G+N T
Sbjct: 194 GMVVHGNARGRTIGYPTANLVLLDRTYMPADGVYVVDVEIQRQKYR-AMASVGKNVT-FD 251
Query: 253 NGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARK 307
E IFDF+Q+IYG+ V + D +R KF +++L + DE+ R
Sbjct: 252 GEEARFEVNIFDFNQDIYGETVMVYWLDRIRDMTKFDSVDQLVDQLKADEEVTRN 306