RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780846|ref|YP_003065259.1| bifunctional riboflavin
kinase/FMN adenylyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(324 letters)
>d1mrza1 b.43.5.1 (A:159-288) Riboflavin kinase domain of
bifunctional FAD synthetase {Thermotoga maritima [TaxId:
2336]}
Length = 130
Score = 112 bits (281), Expect = 5e-26
Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 190 FTIESDVIHGEKIGRTLGFPTANMQLSPD--ILLKEGVYAIRFRTQDQTSYSGVANFGRN 247
F IE V + GR LGFPTAN+ + + LK GVY +R D GV N G
Sbjct: 2 FEIEGIVHKDREFGRKLGFPTANIDRGNEKLVDLKRGVYLVRVHLPDGKKKFGVMNVGFR 61
Query: 248 PTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARK 307
PT+ + E +I DF ++YGQR + ++R E KF IE+LK + +D K AR
Sbjct: 62 PTVGDARNVKYEVYILDFEGDLYGQRLKLEVLKFMRDEKKFDSIEELKAAIDQDVKSARN 121
Query: 308 ILES 311
+++
Sbjct: 122 MIDD 125
>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 147
Score = 104 bits (260), Expect = 1e-23
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 5/126 (3%)
Query: 190 FTIESDVIHGEKIG-RTLGFPTANMQLSPDILL----KEGVYAIRFRTQDQTSYSGVANF 244
+ V+ G G + LG PTAN L G+Y + V +
Sbjct: 5 YFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVSI 64
Query: 245 GRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKK 304
G NP + + F ++ YG+ V+ YLRPE F +E L + D ++
Sbjct: 65 GWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIEE 124
Query: 305 ARKILE 310
A+K LE
Sbjct: 125 AKKRLE 130
>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 154
Score = 101 bits (252), Expect = 9e-23
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 6/128 (4%)
Query: 188 YRFTIESDVIHGEKIG-RTLGFPTANMQLSPD----ILLKEGVYAIRFRTQDQTSYSGVA 242
Y E V+HG G + LG PTAN+ GVY Q + + V
Sbjct: 14 YPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMVQKR-VFPMVM 72
Query: 243 NFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDE 302
+ G NP I ++ Y + V Y+RPE+ + ++KL + D
Sbjct: 73 SVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGLDKLIEDIHTDI 132
Query: 303 KKARKILE 310
+ A ++
Sbjct: 133 RVALNSMD 140
>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of
bifunctional FAD synthetase {Thermotoga maritima [TaxId:
2336]}
Length = 157
Score = 82.7 bits (203), Expect = 4e-17
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 15/169 (8%)
Query: 21 VVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQ 78
VV+IG FDG+H+GH +L +IA + + + P + +
Sbjct: 1 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLM-----TV 55
Query: 79 EKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRG 138
E +E + A + + E F+++ L V V+ G FRFGK+ +G+
Sbjct: 56 ESRVEMLSRYARTVVLDFFRIKDLTPEGFVERYLS---GVSAVVVGRDFRFGKNASGNAS 112
Query: 139 ILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLG 187
L+ V+ E + + VSSS IR + +G V LG
Sbjct: 113 FLR-----KKGVEVYEIEDVVVQGKRVSSSLIRNLVQEGRVEEIPAYLG 156
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR,
NMN-adenylyltransferase domain {Haemophilus influenzae
[TaxId: 727]}
Length = 163
Score = 81.8 bits (201), Expect = 7e-17
Identities = 17/159 (10%), Positives = 44/159 (27%), Gaps = 10/159 (6%)
Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK 80
V G F +H GH ++ +A + ++ + + S + + + +
Sbjct: 5 GVIFGKFYPVHTGHINMIYEAFSKVDE-LHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLR 63
Query: 81 ILEKMGFSALIRY---KFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDR 137
++++ + + + F +
Sbjct: 64 WMQQIFKYQKNQIFIHHLVEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEPQDKA 123
Query: 138 GILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTK 176
+ G +D R + VS++ IRT +
Sbjct: 124 PYEK----YLGLEVSLVDPDRTFFN--VSATKIRTTPFQ 156
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 167
Score = 41.0 bits (95), Expect = 1e-04
Identities = 12/156 (7%), Positives = 44/156 (28%), Gaps = 20/156 (12%)
Query: 22 VAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKI 81
+ +G H GH +++ ++ + I + S S + +
Sbjct: 4 LLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSH-------SIRDPFTAGERVMML 56
Query: 82 LEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQ 141
+ + + + ++ + + +K + + + +Q
Sbjct: 57 TKALSENGIPASRYYIIPVQDIECNALW-----VGHIKMLTPPFDRVYSGNPL-----VQ 106
Query: 142 KRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177
+ + G+ ++ S + +R +
Sbjct: 107 RLFSEDGYEVTAPPLFYRDR---YSGTEVRRRMLDD 139
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Length = 189
Score = 35.9 bits (81), Expect = 0.005
Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 5/158 (3%)
Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSP-----IFTLSPPSIQE 79
G FD H GH L+ + + A I + P + +
Sbjct: 9 GTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQSNP 68
Query: 80 KILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGI 139
++ +T +T + +++ L + + K+ +
Sbjct: 69 SFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNLIQF 128
Query: 140 LQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177
+ + + T + + VSS+ IR
Sbjct: 129 IGVKRPGFHVETPYPLLFADVPEFEVSSTMIRERFKSK 166
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 164
Score = 34.8 bits (79), Expect = 0.010
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 22 VAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHP 59
IG F H GH ++++ + + I + S
Sbjct: 4 FIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSH 41
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate
cytidylyltransferase {Bacillus subtilis [TaxId: 1423]}
Length = 126
Score = 33.0 bits (74), Expect = 0.032
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPR 60
V+ G FD +H GH +LE+A ++ + + + + + +
Sbjct: 4 VITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQ 43
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Escherichia coli [TaxId: 562]}
Length = 157
Score = 30.7 bits (68), Expect = 0.19
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPH 58
G FD I GH I+ +A ++ ++ + + +
Sbjct: 7 GTFDPITNGHIDIVTRATQMFDHVILAIAASPSK 40
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 163
Score = 30.4 bits (67), Expect = 0.21
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 22 VAI--GNFDGIHLGHHLILEQAIKI 44
+A+ G+FD + GH I+++ I
Sbjct: 3 IAVCPGSFDPVTYGHLDIIKRGAHI 27
>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Escherichia coli [TaxId: 562]}
Length = 213
Score = 29.7 bits (65), Expect = 0.33
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 21 VVAI--GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHP 59
+ A+ G FD +H GH +E + + +T++ N P
Sbjct: 4 LQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP 44
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 157
Score = 29.5 bits (65), Expect = 0.34
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 25 GNFDGIHLGHHLILEQAIKI 44
G+FD + LGH I E+A
Sbjct: 8 GSFDPVTLGHVDIFERAAAQ 27
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermus thermophilus [TaxId: 274]}
Length = 160
Score = 29.6 bits (65), Expect = 0.39
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 21 VVAIGNFDGIHLGHHLILEQAIKI 44
VV G+FD + GH ++++A ++
Sbjct: 3 VVYPGSFDPLTNGHLDVIQRASRL 26
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermotoga maritima [TaxId: 2336]}
Length = 157
Score = 29.5 bits (65), Expect = 0.40
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 21 VVAIGNFDGIHLGHHLILEQAIKI 44
V G+FD I LGH I+++A+ I
Sbjct: 3 AVYPGSFDPITLGHVDIIKRALSI 26
>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase
{Human (Homo sapiens), FKSG76 [TaxId: 9606]}
Length = 233
Score = 28.7 bits (63), Expect = 0.69
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 21 VVAIGNFDGIHLGHHLILEQAIKIAN 46
++A G+F+ I H + E A +
Sbjct: 7 LLACGSFNPITNMHLRMFEVARDHLH 32
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 28.2 bits (62), Expect = 1.1
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 36/97 (37%)
Query: 151 TVFIDELRNNKSQ-----IVS--SSNIRTALTKGHVLNA------------AHLLGYRFT 191
VFI ++RN KS+ ++ +NIR+ L+ LLG+
Sbjct: 6 AVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGH--- 62
Query: 192 IESDVIHGEKIGRTLGFPTA--NMQLSPDILLKEGVY 226
D+ G A + S K+ Y
Sbjct: 63 ---DI--------DFGHMEAVNLLS-SNRYTEKQIGY 87
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 27.9 bits (61), Expect = 1.3
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 21 VVAIGNFDGIHLGHHLILEQAIKIAN 46
++A G+F+ I H + E A N
Sbjct: 7 LLACGSFNPITNMHLRLFELAKDYMN 32
>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain
{Sulfur-oxidizing endosymbiont of Riftia pachyptila
[TaxId: 35843]}
Length = 223
Score = 27.5 bits (60), Expect = 1.6
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPR 60
VVA + +H H + A++ + + V +
Sbjct: 22 VVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGKLK 61
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase
(Pantoate-beta-alanine ligase, PanC) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 286
Score = 25.9 bits (56), Expect = 4.1
Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 1 MHVFHNI-EINQSLPNHLKGG--VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNP 57
++V+ ++ G V+ + +H GH ++ A ++ + + + NP
Sbjct: 9 LNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNP 68
Query: 58 HP 59
Sbjct: 69 MQ 70
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase
(Pantoate-beta-alanine ligase, PanC) {Thermus
thermophilus [TaxId: 274]}
Length = 276
Score = 25.2 bits (54), Expect = 7.2
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 1 MHVFHNI-EINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHP 59
M + E+ +LP + GV + +H GH ++E+A + N + + NP
Sbjct: 1 MRTVSTVAELRAALP---REGVGFVPTMGYLHRGHLALVERARRE-NPFVVVSVFVNPLQ 56
>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis
protein WzzE {Escherichia coli [TaxId: 562]}
Length = 265
Score = 25.3 bits (55), Expect = 7.5
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 38 LEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKI 81
+EQA+KIA I+ + + + S +F L P +Q ++
Sbjct: 174 IEQALKIAEQHNISRSATDVPAEELPD--SEMFLLGRPMLQARL 215
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.404
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,234,003
Number of extensions: 58615
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 27
Length of query: 324
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,240,546
Effective search space: 296490494
Effective search space used: 296490494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)