HHsearch alignment for GI: 254780847 and conserved domain: TIGR01428
>TIGR01428 HAD_type_II haloacid dehalogenase, type II; InterPro: IPR006328 These proteins catalyze the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids . They belong to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, class (subfamily) I. Note that the Type I HAD enzymes have not yet been fully characterised, but clearly utilise a substantially different catalytic mechanism and are thus unlikely to be related.; GO: 0019120 hydrolase activity acting on acid halide bonds in C-halide compounds, 0008152 metabolic process.
Probab=98.79 E-value=2e-08 Score=75.53 Aligned_cols=183 Identities=17% Similarity=0.234 Sum_probs=98.3
Q ss_pred CCEEEEECCCEEEECC-------CCCCCH-HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCC---CCHHCCCCCCH
Q ss_conf 7999992744323188-------148627-999999998798199985989995899998751277---70000135687
Q gi|254780847|r 15 YDVILCDVWGVLHNGQ-------KFLPGT-IPALKEARENGLKVILFTNSPRPSASVISQIQSLGS---SSQFWDDIITS 83 (282)
Q Consensus 15 yd~~lfD~DGvL~~g~-------~~ipgA-~e~l~~L~~~g~~~~~lTN~s~~~~~~~~~L~~lG~---~~~~~d~I~ts 83 (282)
T Consensus 1 ~~a~vFD~yGTL~D~~s~~~~~~~~~~~~G~~~~~~lWR~~~------------l~y~~~~~~mg~~w~~y~df~~~--- 65 (207)
T TIGR01428 1 IKALVFDVYGTLVDVHSVVERFAELFGGRGLEALSQLWRQKQ------------LEYSWLRTLMGQNWTPYKDFWDL--- 65 (207)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH------------HHHHHHHHHCCCCCCCCCCHHHH---
T ss_conf 955774164357658999999885158534899999999988------------88988876258888888888999---
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCE-EECCCC
Q ss_conf 9999999985316545438725212431179731575567868998437710011799999999997305740-312664
Q gi|254780847|r 84 GDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDEKDKTEDYRMLLERFAHRHIPL-ICANPD 162 (282)
Q Consensus 84 ~~~~~~~l~~~~~~v~viG~~~~~~~l~~~g~~~~~~~~~~~iv~~g~~~~~~~~~~~~~~l~~~~~~~~~~~-i~~N~D 162 (282)
T Consensus 66 ---~~~al---------------~~~~~~~~~~~~~~~~~~~~L~~~-~~~-L~p~pD~~~gL~~L~~~G~~l~iLSNg~ 125 (207)
T TIGR01428 66 ---TAEAL---------------RYLLGRLGLASTLDEAAADRLAEA-YLR-LPPHPDVPAGLRALKERGLRLAILSNGS 125 (207)
T ss_pred ---HHHHH---------------HHHHHHCCCCCCCCHHHHHHHHHH-HHC-CCCCCCCHHHHHHHHHCCCEEEEECCCC
T ss_conf ---99999---------------999975587767898889999877-635-8998661889999976432365214898
Q ss_pred CC-CC---CCCC--HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHC
Q ss_conf 32-25---6630--011048999988750476532347770258999998654314889000899738857889999976
Q gi|254780847|r 163 IV-AN---RGNK--IIPCAGALALIYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQS 236 (282)
Q Consensus 163 ~~-~p---~~~~--~~~~~G~~~~~~~~~~g~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~~~lmIGD~l~tDI~gA~~~ 236 (282)
T Consensus 126 ~~~~~~~~~~aGvdL---~~~Fd~~lS~d~~~~Y---KP~P~vY~~~~~~l-----g~~p~ev~~Vasn~w-D~~GA~~~ 193 (207)
T TIGR01428 126 PAMLKSLVKHAGVDL---DLPFDAVLSADAVRAY---KPAPQVYQLALEAL-----GVPPEEVLFVASNAW-DLGGAKKF 193 (207)
T ss_pred HHHHHHHHHHCCCCC---CCCCCCCCCCCCCCCC---CCCHHHHHHHHHHH-----CCCHHHEEECCCCHH-HHHHHHHC
T ss_conf 678999999628875---3000010141312355---88778888888763-----687878211014756-78999776
Q ss_pred CCCEEEEC
Q ss_conf 99699971
Q gi|254780847|r 237 GIDALYVS 244 (282)
Q Consensus 237 G~~silV~ 244 (282)
T Consensus 194 G~~~~win 201 (207)
T TIGR01428 194 GFKTAWIN 201 (207)
T ss_pred CCCEEEEE
T ss_conf 96668874