HHsearch alignment for GI: 254780847 and conserved domain: TIGR02244
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) . These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognized by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold..
Probab=97.58 E-value=0.0002 Score=49.26 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCC-CCEEEECCCHHHHHHHHH-HCCCCEEEECC
Q ss_conf 702589999986543148890-008997388578899999-76996999718
Q gi|254780847|r 196 HLPIYEMAFKKISSLCNSFNK-KRILAIGDGMDTDIKGAL-QSGIDALYVSD 245 (282)
Q Consensus 196 ~~~~~~~a~~~l~~~~~~~~~-~~~lmIGD~l~tDI~gA~-~~G~~silV~t 245 (282)
T Consensus 335 s~~~f~~~~~GmLq---k~~G~~~vLYfGDHiy~D~~~~~k~~gWRT~~ii~ 383 (402)
T TIGR02244 335 SLKQFHELLKGMLQ---KWRGEKEVLYFGDHIYSDLLRSKKKRGWRTALIIP 383 (402)
T ss_pred CHHHHHHHHHHHHH---HCCCCCCEEEECCCCHHCCCCHHHCCCCCEEEEEH
T ss_conf 86899999863563---22899843677676100023120016875578726