HHsearch alignment for GI: 254780847 and conserved domain: cd06295
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=92.01 E-value=1.1 Score=24.85 Aligned_cols=66 Identities=12% Similarity=0.236 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCHHCCC---------C----CCHHHHHHHHHHHHC-CCCCCCC
Q ss_conf 9999999987981999859899958999987512777000013---------5----687999999998531-6545438
Q gi|254780847|r 37 IPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQFWDD---------I----ITSGDLTHHLLVEES-HNIFFIG 102 (282)
Q Consensus 37 ~e~l~~L~~~g~~~~~lTN~s~~~~~~~~~L~~lG~~~~~~d~---------I----~ts~~~~~~~l~~~~-~~v~viG 102 (282)
T Consensus 54 ~~~~~~l~~~~vdGiIi~~~-~~~~~~~~~l~~~~iPvV~~d~~~~~~~~~~V~~d~~~a~~~~~~~L~~~G~~~I~~i~ 132 (275)
T cd06295 54 DWLARYLASGRADGVILIGQ-HDQDPLPERLAETGLPFVVWGRPLPGQPYCYVGSDNVGGGRLATEHLLARGRRRIAFLG 132 (275)
T ss_pred HHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 99999998489988999799-89979999999579999999862689999789828799999999999980998798705
Q ss_pred C
Q ss_conf 7
Q gi|254780847|r 103 P 103 (282)
Q Consensus 103 ~ 103 (282)
T Consensus 133 ~ 133 (275)
T cd06295 133 G 133 (275)
T ss_pred C
T ss_conf 8