HHsearch results for GI: 254780847 and protein with PDBid: 3ib6_A
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Listeria monocytogenes CLIP81459}
Probab=99.59 E-value=4.3e-15 Score=117.85 Aligned_cols=129 Identities=17% Similarity=0.343 Sum_probs=98.1
Q ss_pred CCEEEEECCCEEEE---------------CCCCCCCHHHHHHHHHHCCCCEEEECCCCCC-HHHHHHHHHHCCCCCHHCC
Q ss_conf 79999927443231---------------8814862799999999879819998598999-5899998751277700001
Q gi|254780847|r 15 YDVILCDVWGVLHN---------------GQKFLPGTIPALKEARENGLKVILFTNSPRP-SASVISQIQSLGSSSQFWD 78 (282)
Q Consensus 15 yd~~lfD~DGvL~~---------------g~~~ipgA~e~l~~L~~~g~~~~~lTN~s~~-~~~~~~~L~~lG~~~~~~d 78 (282)
-+-++||.++++.. .-.++||+.|+|+.|+++|+++.++||++.. .+...+.|.++|+.. .++
T Consensus 3 l~~~~~d~g~~l~~~~~~~~~~~~~~~~~~~~l~~~~~e~L~~Lk~~g~kl~ivTN~~~~~~~~~~~~L~~~gl~~-~Fd 81 (189)
T 3ib6_A 3 LTHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIID-YFD 81 (189)
T ss_dssp CCEEEECTBTTTBCCCTTSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGG-GEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCHH-HCC
T ss_conf 8899886386365512778987454228747747349999999997899499996998632999999999869987-785
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 35687999999998531654543872521243117973157556786899843771001179999999999730574031
Q gi|254780847|r 79 DIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDEKDKTEDYRMLLERFAHRHIPLIC 158 (282)
Q Consensus 79 ~I~ts~~~~~~~l~~~~~~v~viG~~~~~~~l~~~g~~~~~~~~~~~iv~~g~~~~~~~~~~~~~~l~~~~~~~~~~~i~ 158 (282)
.|++|..
T Consensus 82 ~i~~s~~------------------------------------------------------------------------- 88 (189)
T 3ib6_A 82 FIYASNS------------------------------------------------------------------------- 88 (189)
T ss_dssp EEEECCT-------------------------------------------------------------------------
T ss_pred EEEECCC-------------------------------------------------------------------------
T ss_conf 6663265-------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCC
Q ss_conf 26643225663001104899998875047653234777025899999865431488900089973885788999997699
Q gi|254780847|r 159 ANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGI 238 (282)
Q Consensus 159 ~N~D~~~p~~~~~~~~~G~~~~~~~~~~g~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~~~lmIGD~l~tDI~gA~~~G~ 238 (282)
. + ...-+.||+|.+|+.+++++ +++|++|+||||++.+||.+|+++||
T Consensus 89 ----~--~---------------------~~~~~~KP~p~~~~~~l~~~-----~i~p~~~l~VGD~~~~Di~~A~~aG~ 136 (189)
T 3ib6_A 89 ----E--L---------------------QPGKMEKPDKTIFDFTLNAL-----QIDKTEAVMVGNTFESDIIGANRAGI 136 (189)
T ss_dssp ----T--S---------------------STTCCCTTSHHHHHHHHHHH-----TCCGGGEEEEESBTTTTHHHHHHTTC
T ss_pred ----C--H---------------------HHCCCCCCCHHHHHHHHHHH-----HCCCCCEEEEEECCHHHHHHHHHCCC
T ss_conf ----2--0---------------------20278898848999999974-----23466328997470887999998599
Q ss_pred CEEEECCCCCC
Q ss_conf 69997186787
Q gi|254780847|r 239 DALYVSDGIHR 249 (282)
Q Consensus 239 ~silV~tG~~~ 249 (282)
+||||.+|...
T Consensus 137 ~ti~v~~~~~~ 147 (189)
T 3ib6_A 137 HAIWLQNPEVC 147 (189)
T ss_dssp EEEEECCTTTC
T ss_pred EEEEECCCCCC
T ss_conf 79998899877