BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter asiaticus str. psy62] (282 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter asiaticus str. psy62] Length = 282 Score = 585 bits (1509), Expect = e-169, Method: Compositional matrix adjust. Identities = 282/282 (100%), Positives = 282/282 (100%) Query: 1 MTKEITSLRTILPYYDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTNSPRPS 60 MTKEITSLRTILPYYDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTNSPRPS Sbjct: 1 MTKEITSLRTILPYYDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTNSPRPS 60 Query: 61 ASVISQIQSLGSSSQFWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNE 120 ASVISQIQSLGSSSQFWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNE Sbjct: 61 ASVISQIQSLGSSSQFWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNE 120 Query: 121 QHAETILCTGLYDDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALAL 180 QHAETILCTGLYDDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALAL Sbjct: 121 QHAETILCTGLYDDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALAL 180 Query: 181 IYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDA 240 IYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDA Sbjct: 181 IYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDA 240 Query: 241 LYVSDGIHRHEYLFNDNIDAQMLQNFFTKKNLYPHWWIQQLI 282 LYVSDGIHRHEYLFNDNIDAQMLQNFFTKKNLYPHWWIQQLI Sbjct: 241 LYVSDGIHRHEYLFNDNIDAQMLQNFFTKKNLYPHWWIQQLI 282 >gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 24.3 bits (51), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 169 NKIIPCAGALALIYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNK 216 N +I C+ + L G++ IGK +P M +SL NSF K Sbjct: 142 NSMIRCSTVVLTTGTFLRGVIH-IGKLKIPAGRMGDSPSNSLFNSFMK 188 >gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Score = 23.9 bits (50), Expect = 3.2, Method: Compositional matrix adjust. Identities = 12/43 (27%), Positives = 21/43 (48%) Query: 40 LKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQFWDDIIT 82 EA E G+ VIL +P + + + + GS ++D+ T Sbjct: 393 FTEAFEQGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFT 435 >gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 338 Score = 23.5 bits (49), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 7/105 (6%) Query: 151 HRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNG--IVKMIGKPHLPIYEMAFKKIS 208 H IP+IC ++ G A A A+I + L + + G+ + + +K S Sbjct: 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHS 100 Query: 209 SLCNS-----FNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIH 248 + ++ + + ++ LQ G+D + + DG H Sbjct: 101 AYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFH 145 >gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 294 Score = 23.1 bits (48), Expect = 6.3, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 13/88 (14%) Query: 51 ILFTNSPRPSASVISQIQSLGSSSQFWDDI---ITSGDLTHHLLVEESHNIFFIGPQRDY 107 +LF+ P SAS +Q + + SS DI I +T LVE ++ Y Sbjct: 8 LLFSYIPM-SASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGND------SHSY 60 Query: 108 ALLEKLNIKIVNEQHAETILCTGLYDDE 135 + IKI Q+A+ ILC GL+ +E Sbjct: 61 QVTSADAIKI---QNADLILCNGLHLEE 85 >gi|254780669|ref|YP_003065082.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Candidatus Liberibacter asiaticus str. psy62] Length = 301 Score = 22.7 bits (47), Expect = 6.6, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 17/25 (68%) Query: 94 ESHNIFFIGPQRDYALLEKLNIKIV 118 ESH+ F+ ++ YA+ + LNI +V Sbjct: 55 ESHDHAFMIAEKLYAICQSLNIGLV 79 >gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate 3-epimerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 224 Score = 22.3 bits (46), Expect = 8.9, Method: Compositional matrix adjust. Identities = 10/37 (27%), Positives = 19/37 (51%) Query: 8 LRTILPYYDVILCDVWGVLHNGQKFLPGTIPALKEAR 44 L ++ D+IL GQ+ + TIP +++A+ Sbjct: 126 LEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK 162 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.140 0.425 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 188,223 Number of Sequences: 1233 Number of extensions: 7946 Number of successful extensions: 31 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 8 length of query: 282 length of database: 328,796 effective HSP length: 73 effective length of query: 209 effective length of database: 238,787 effective search space: 49906483 effective search space used: 49906483 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)