BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780847|ref|YP_003065260.1| hypothetical protein
CLIBASIA_03710 [Candidatus Liberibacter asiaticus str. psy62]
(282 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 282
Score = 585 bits (1509), Expect = e-169, Method: Compositional matrix adjust.
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MTKEITSLRTILPYYDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTNSPRPS 60
MTKEITSLRTILPYYDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTNSPRPS
Sbjct: 1 MTKEITSLRTILPYYDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTNSPRPS 60
Query: 61 ASVISQIQSLGSSSQFWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNE 120
ASVISQIQSLGSSSQFWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNE
Sbjct: 61 ASVISQIQSLGSSSQFWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNE 120
Query: 121 QHAETILCTGLYDDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALAL 180
QHAETILCTGLYDDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALAL
Sbjct: 121 QHAETILCTGLYDDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALAL 180
Query: 181 IYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDA 240
IYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDA
Sbjct: 181 IYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDA 240
Query: 241 LYVSDGIHRHEYLFNDNIDAQMLQNFFTKKNLYPHWWIQQLI 282
LYVSDGIHRHEYLFNDNIDAQMLQNFFTKKNLYPHWWIQQLI
Sbjct: 241 LYVSDGIHRHEYLFNDNIDAQMLQNFFTKKNLYPHWWIQQLI 282
>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
[Candidatus Liberibacter asiaticus str. psy62]
Length = 626
Score = 24.3 bits (51), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 169 NKIIPCAGALALIYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNK 216
N +I C+ + L G++ IGK +P M +SL NSF K
Sbjct: 142 NSMIRCSTVVLTTGTFLRGVIH-IGKLKIPAGRMGDSPSNSLFNSFMK 188
>gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Candidatus
Liberibacter asiaticus str. psy62]
Length = 493
Score = 23.9 bits (50), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 40 LKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQFWDDIIT 82
EA E G+ VIL +P + + + + GS ++D+ T
Sbjct: 393 FTEAFEQGVDVILTPTTPTSAFPLGKEENNSGSMGHIYNDVFT 435
>gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 338
Score = 23.5 bits (49), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 151 HRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNG--IVKMIGKPHLPIYEMAFKKIS 208
H IP+IC ++ G A A A+I + L + + G+ + + +K S
Sbjct: 41 HAPIPVICVGGFVMGGTGKTPTALAIAKAVIDKNLKPGFLSRGYGRKSRISFRVDLEKHS 100
Query: 209 SLCNS-----FNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIH 248
+ ++ + + ++ LQ G+D + + DG H
Sbjct: 101 AYDVGDEPLLLARRAVTIVTSDRKIGVQMLLQEGVDIIIMDDGFH 145
>gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 294
Score = 23.1 bits (48), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 51 ILFTNSPRPSASVISQIQSLGSSSQFWDDI---ITSGDLTHHLLVEESHNIFFIGPQRDY 107
+LF+ P SAS +Q + + SS DI I +T LVE ++ Y
Sbjct: 8 LLFSYIPM-SASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGND------SHSY 60
Query: 108 ALLEKLNIKIVNEQHAETILCTGLYDDE 135
+ IKI Q+A+ ILC GL+ +E
Sbjct: 61 QVTSADAIKI---QNADLILCNGLHLEE 85
>gi|254780669|ref|YP_003065082.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 301
Score = 22.7 bits (47), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 94 ESHNIFFIGPQRDYALLEKLNIKIV 118
ESH+ F+ ++ YA+ + LNI +V
Sbjct: 55 ESHDHAFMIAEKLYAICQSLNIGLV 79
>gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate 3-epimerase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 224
Score = 22.3 bits (46), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 8 LRTILPYYDVILCDVWGVLHNGQKFLPGTIPALKEAR 44
L ++ D+IL GQ+ + TIP +++A+
Sbjct: 126 LEDVIDEIDMILIMTVNPGFGGQQLIESTIPKIRQAK 162
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.140 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,223
Number of Sequences: 1233
Number of extensions: 7946
Number of successful extensions: 31
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 8
length of query: 282
length of database: 328,796
effective HSP length: 73
effective length of query: 209
effective length of database: 238,787
effective search space: 49906483
effective search space used: 49906483
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)