RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780848|ref|YP_003065261.1| co-chaperonin GroES
[Candidatus Liberibacter asiaticus str. psy62]
(111 letters)
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP:
b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O*
2c7c_O 2c7d_O
Length = 97
Score = 94.8 bits (236), Expect = 4e-21
Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 9 LRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEV 68
+RP RV+V+R + E K+A G I++ + + K + GE++ VG G + ++G+V +V
Sbjct: 3 IRPLHDRVIVKRKEVETKSAGG-IVLTGSAAAKST--RGEVLAVGNGRILENGEVKPLDV 59
Query: 69 SKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIV 104
GDIV+F G + + D EE L+M ESDI+ IV
Sbjct: 60 KVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIV 95
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas
oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas
oryzae PV}
Length = 95
Score = 89.8 bits (223), Expect = 1e-19
Identities = 34/96 (35%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Query: 9 LRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEV 68
++P RVVV+ ++++ +A G I+IPD+ EK + GE++ +GAG +G + P V
Sbjct: 3 IKPLHDRVVVKPIEADEVSAGG-IVIPDSAKEKST--KGEVVAIGAGKPLDNGSLHAPVV 59
Query: 69 SKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIV 104
GD V++G+++G+ K +G EY V++E DI+ ++
Sbjct: 60 KVGDKVIYGQYAGSSYKS-EGVEYKVLREDDILAVI 94
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop,
structural genomics, PSI, protein structure initiative;
2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB:
1hx5_A 1lep_A 1p82_A 1p83_A
Length = 99
Score = 86.4 bits (214), Expect = 1e-18
Identities = 37/99 (37%), Positives = 65/99 (65%), Gaps = 5/99 (5%)
Query: 9 LRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEP-E 67
++P +++V+ ++E TA+G ++IPDT EKP G ++ VG G D+ G+ P +
Sbjct: 5 IKPLEDKILVQANEAETTTASG-LVIPDTAKEKPQ--EGTVVAVGPGRWDEDGEKRIPLD 61
Query: 68 VSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIVVE 106
V++GD V++ K+ GTEIK +GEEYL++ D++ +V +
Sbjct: 62 VAEGDTVIYSKYGGTEIKY-NGEEYLILSARDVLAVVSK 99
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
b.35.1.1 PDB: 1wf4_o* 1wnr_A
Length = 100
Score = 82.7 bits (204), Expect = 2e-17
Identities = 43/102 (42%), Positives = 70/102 (68%), Gaps = 4/102 (3%)
Query: 3 GEHKNYLRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGK 62
E K ++P RVVV+R++ E KT G I++PDT EKP G+++ VG G + ++G+
Sbjct: 2 AEVKTVIKPLGDRVVVKRIEEEPKTK-GGIVLPDTAKEKPQ--KGKVIAVGTGRVLENGQ 58
Query: 63 VIEPEVSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIV 104
+ EV +GDIV+F K+ GTEI++ DGEEY+++ E D++ ++
Sbjct: 59 RVPLEVKEGDIVVFAKYGGTEIEI-DGEEYVILSERDLLAVL 99
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator,
protein binding; NMR {Homo sapiens}
Length = 411
Score = 31.1 bits (69), Expect = 0.064
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 29 TGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEVSKGDIVLF 76
T L P V AS+ ++ AG M G + P+ KG + +
Sbjct: 7 TSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQ 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 30.2 bits (67), Expect = 0.11
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 18/64 (28%)
Query: 21 LQSEIKTATGNILIPDTVSEKPSASSGEIMW------------------VGAGVMDQSGK 62
+ + +K TG ++ P T+S+ S + +I W +G G SG
Sbjct: 400 IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGT 459
Query: 63 VIEP 66
V +P
Sbjct: 460 VTQP 463
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 30.3 bits (68), Expect = 0.12
Identities = 15/122 (12%), Positives = 28/122 (22%), Gaps = 66/122 (54%)
Query: 5 HKNYLRPTRGRVVVRRLQSEIK------------TATG--------NILIPDTVS----- 39
H + L P + +++ + T G +I V
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI-SERIVDCIIRL 486
Query: 40 ----EK-------------PSASSGEIMWVG----------------AGVMDQSGKVIEP 66
E P +SG +G AG +D + +
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASG----LGVLTHRNKDGTGVRVIVAGTLDIN---PDD 539
Query: 67 EV 68
+
Sbjct: 540 DY 541
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn-
helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP:
a.75.1.1
Length = 218
Score = 29.8 bits (67), Expect = 0.15
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 65 EPEVSKGDIVLFGKWSGTEIKLND 88
E +I + G+WS ++++ D
Sbjct: 10 ERFFIPHEIKVMGRWSTEDVEVKD 33
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 204
Score = 27.6 bits (61), Expect = 0.68
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 62 KVIEPEVSK-GDIVLFGKWSGTEIKLND 88
+ P V++ DI LFGKWS ++++ND
Sbjct: 5 ETAAPAVAETPDIKLFGKWSTDDVQIND 32
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 1.5
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 8/26 (30%)
Query: 18 VRRLQSEIKTATGNILIPDTVSEKPS 43
+++LQ+ +K L D P+
Sbjct: 22 LKKLQASLK------LYAD--DSAPA 39
>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator,
receptor, ubiquitin-proteasome-degradation pathway;
1.70A {Mus musculus} PDB: 2z59_A
Length = 153
Score = 26.3 bits (58), Expect = 1.6
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 27 TATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEVSKGDIVLF 76
+ T L P V +S+ ++ AG M G + P+ KG + +
Sbjct: 4 STTSGALFPSLVPGSRGSSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQ 53
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix,
ARAC family, activator, cytoplasm, DNA-binding,
transcription; HET: PAM; 1.90A {Vibrio cholerae O395}
Length = 276
Score = 25.5 bits (55), Expect = 3.2
Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 48 EIMWV--GAGVMDQSGKVIEPEVSKGDIVLFGK 78
++ W+ G + ++ E++ I+L K
Sbjct: 31 KMFWIDSGIAKLIDKNCLVSYEINSSSIILLKK 63
>3euk_L Chromosome partition protein MUKE; MUKB, MUKF, chromosome
condensation, condensin, SMC, non-SMC subunit, ABC-type
ATPase, WHD, ATP; HET: ATG; 4.00A {Haemophilus ducreyi}
Length = 238
Score = 25.2 bits (55), Expect = 3.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 8 YLRPTRGRVVVRRLQSEIKTATGNIL 33
YLRP ++ R SE++ G +L
Sbjct: 73 YLRPKASTLIARSAMSEMEMLVGKVL 98
>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation,
condensin, non-SMC subunit, kleisin, calcium, cell
cycle, cell division; 2.90A {Escherichia coli}
Length = 234
Score = 25.2 bits (55), Expect = 3.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 8 YLRPTRGRVVVRRLQSEIKTATGNIL 33
YLRP ++ R + SE+ G IL
Sbjct: 74 YLRPRSTTLIPRSVLSELDMMVGKIL 99
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 24.6 bits (53), Expect = 5.7
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 24 EIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEVSKGDIV 74
I N+ V K S+ +GA + G V E +VS G+ V
Sbjct: 1054 RIYIKDENVHTNANVKPKADKSNPSH--IGAQM---PGSVTEVKVSVGETV 1099
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA SAP; 2.00A
{Rhizobium etli cfn 42}
Length = 1165
Score = 24.3 bits (52), Expect = 6.1
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 35 PDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEVSKGDIV 74
+ + A G VGA + G + VS G V
Sbjct: 1081 ATGAAVRRKAEPGNAAHVGAPM---PGVISRVFVSSGQAV 1117
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 24.4 bits (52), Expect = 6.6
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 24 EIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEVSKGDIV 74
I + K +GA + GKVI+ +V G V
Sbjct: 626 SILVKDTQAMKEMHFHPKALKDVKGQ--IGAPM---PGKVIDIKVVAGAKV 671
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 102
Score = 23.8 bits (51), Expect = 8.9
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 43 SASSGEIMWVGAGVMDQSGKVIEPEVSKGDIVLFGK 78
S SSG ++ V D + +V+ + +
Sbjct: 3 SGSSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFR 38
>2psb_A YERB protein; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG, unknown function; 2.10A {Bacillus subtilis} SCOP:
c.153.1.1
Length = 320
Score = 23.8 bits (51), Expect = 8.9
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 4 EHKNYLRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSG--EIMWVGAG--VMDQ 59
+ + Y R + G + R + NI I S G +I G ++ Q
Sbjct: 204 KAEFYTRSSDGVITTDRETGKPVAMQ-NIFI-VEASHHIIDQDGRRDIDLESGGKGLLFQ 261
Query: 60 SGKVIEPEVSKGDIVLFGKWSGTEIKLNDG 89
G VIE + + + + G + G
Sbjct: 262 HGNVIETDWKQVNGRIVPVKDGKWLPFVPG 291
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage on
PAIR of basic residues, complement alternate pathway,
complement pathway; HET: NAG; 3.10A {Homo sapiens} PDB:
3kls_A* 3km9_A* 1xwe_A
Length = 1676
Score = 23.7 bits (50), Expect = 10.0
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 67 EVSKGDIVLF-GKWSGTEIKLNDGEEYLVM 95
K + F K + T +L G +YL+M
Sbjct: 1591 VAEKDSEITFIKKVTCTNAELVKGRQYLIM 1620
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.311 0.132 0.371
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 962,018
Number of extensions: 39836
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 26
Length of query: 111
Length of database: 5,693,230
Length adjustment: 75
Effective length of query: 36
Effective length of database: 3,874,930
Effective search space: 139497480
Effective search space used: 139497480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.2 bits)