RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780848|ref|YP_003065261.1| co-chaperonin GroES
[Candidatus Liberibacter asiaticus str. psy62]
(111 letters)
>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli
[TaxId: 562]}
Length = 97
Score = 88.3 bits (219), Expect = 1e-19
Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 9 LRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEV 68
+RP RV+V+R + E K+A G I++ + + K + GE++ VG G + ++G+V +V
Sbjct: 3 IRPLHDRVIVKRKEVETKSAGG-IVLTGSAAAKST--RGEVLAVGNGRILENGEVKPLDV 59
Query: 69 SKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIV 104
GDIV+F G + + D EE L+M ESDI+ IV
Sbjct: 60 KVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIV 95
>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus
[TaxId: 274]}
Length = 96
Score = 81.5 bits (201), Expect = 2e-17
Identities = 42/99 (42%), Positives = 69/99 (69%), Gaps = 4/99 (4%)
Query: 6 KNYLRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIE 65
K ++P RVVV+R++ E KT G I++PDT EKP G+++ VG G + ++G+ +
Sbjct: 1 KTVIKPLGDRVVVKRIEEEPKTK-GGIVLPDTAKEKPQ--KGKVIAVGTGRVLENGQRVP 57
Query: 66 PEVSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIV 104
EV +GDIV+F K+ GTEI++ DGEEY+++ E D++ ++
Sbjct: 58 LEVKEGDIVVFAKYGGTEIEI-DGEEYVILSERDLLAVL 95
>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 99
Score = 81.0 bits (200), Expect = 2e-17
Identities = 37/99 (37%), Positives = 63/99 (63%), Gaps = 5/99 (5%)
Query: 9 LRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSG-KVIEPE 67
++P +++V+ ++E TA ++IPDT EKP G ++ VG G D+ G K I +
Sbjct: 5 IKPLEDKILVQANEAETTTA-SGLVIPDTAKEKPQ--EGTVVAVGPGRWDEDGEKRIPLD 61
Query: 68 VSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIVVE 106
V++GD V++ K+ GTEIK +GEEYL++ D++ +V +
Sbjct: 62 VAEGDTVIYSKYGGTEIKY-NGEEYLILSARDVLAVVSK 99
>d2omza1 b.1.18.15 (A:417-495) Internalin A {Listeria
monocytogenes [TaxId: 1639]}
Length = 79
Score = 27.8 bits (62), Expect = 0.29
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 18/64 (28%)
Query: 21 LQSEIKTATGNILIPDTVSEKPSASSGEIMW------------------VGAGVMDQSGK 62
+ + +K TG ++ P T+S+ S + +I W +G G SG
Sbjct: 14 IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGT 73
Query: 63 VIEP 66
V +P
Sbjct: 74 VTQP 77
>d1h6ta1 b.1.18.15 (A:241-321) Internalin B {Listeria
monocytogenes [TaxId: 1639]}
Length = 81
Score = 27.4 bits (61), Expect = 0.29
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 18/64 (28%)
Query: 21 LQSEIKTATGNILIPDTVSEKPSASSGEIMW------------------VGAGVMDQSGK 62
+ + +K G+++ P+ +S+ + W +G G+
Sbjct: 15 VPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGR 74
Query: 63 VIEP 66
V +P
Sbjct: 75 VTQP 78
>d1h6ua1 b.1.18.15 (A:263-343) Internalin H {Listeria
monocytogenes [TaxId: 1639]}
Length = 81
Score = 27.4 bits (61), Expect = 0.34
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 18/64 (28%)
Query: 21 LQSEIKTATGNILIPDTVSEKPSASSGEIMW------------------VGAGVMDQSGK 62
+ + +K +G + P T+S+ + +S + W + SG
Sbjct: 15 VPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGT 74
Query: 63 VIEP 66
V +P
Sbjct: 75 VTQP 78
>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 201
Score = 26.0 bits (57), Expect = 0.81
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 73 IVLFGKWSGTEIKLND 88
I + G+WS ++++ D
Sbjct: 1 IKVMGRWSTEDVEVKD 16
>d1ofda1 b.80.4.1 (A:1240-1507) Alpha subunit of glutamate
synthase, C-terminal domain {Synechocystis sp. [TaxId:
1143]}
Length = 268
Score = 24.6 bits (53), Expect = 2.6
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 15 RVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVG 53
R V RL I GN ++ ++G+
Sbjct: 39 RTVGTRLSGAIAKKYGNNGFEGNITLNFQGAAGQSFGAF 77
>d1xwea_ b.40.3.3 (A:) Complement C5 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 151
Score = 24.5 bits (53), Expect = 2.8
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 65 EPEVSKGDIVLF-GKWSGTEIKLNDGEEYLVM-QESDIMG 102
E K + F K + T +L G +YL+M +E+ +
Sbjct: 64 EAVAEKDSEITFIKKVTCTNAELVKGRQYLIMGKEALQIK 103
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 23.8 bits (51), Expect = 4.5
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 43 SASSGEIMWVGAGVMDQSGKVIEPEVSKGDIVLFGK 78
S SSG ++ V D + +V+ + +
Sbjct: 3 SGSSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFR 38
>d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 415
Score = 23.4 bits (49), Expect = 5.0
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 31 NILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEV 68
N LIP +S+ + G + VI+P
Sbjct: 18 NWLIPLKEEILAKSSNIRTSALIKGKGYKGAVVIDPPA 55
>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 317
Score = 22.8 bits (49), Expect = 7.6
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 27 TATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEP 66
+ GN++ P S G I+ + +
Sbjct: 236 RSNGNLIAPWYGHILSGESHGRILKTDLNSGNCVVQCQTE 275
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.132 0.371
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 410,355
Number of extensions: 16686
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 16
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.0 bits)