HHsearch alignment for GI: 254780849 and conserved domain: TIGR02343
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit; InterPro: IPR012718 Members of this eukaryotic family are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=94.30 E-value=0.014 Score=35.23 Aligned_cols=157 Identities=17% Similarity=0.258 Sum_probs=82.2
Q ss_pred HCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCHH---HHCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 42432000110146552033330232001122476542331013444113102---201356441001114677531116
Q gi|254780849|r 168 QIGPHGIITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYI---LIYDKKISALQPLLPILESATQSG 244 (551)
Q Consensus 168 ~i~~d~vi~i~~~~~~~~d~~li~G~~id~g~~~~~fi~~~~~~~~~~~n~~I---li~d~~Le~~~~~~~~le~~~~~~ 244 (551)
T Consensus 185 eiav~AVL~VaD~eRrDvdfdLIk~---------------~~kvGg~L~dt~LI~Gi~idKdfSHPQM~K~v~d~~g~dg 249 (541)
T TIGR02343 185 EIAVDAVLAVADLERRDVDFDLIKV---------------EGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDKEGSDG 249 (541)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHEEE---------------CCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCCC
T ss_conf 9999988743055565565120120---------------4343885332113300586225787888641346667773
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHH---HHHHHHH---HHHHHCCCCCCCHHHCCCCCCCC---CC
Q ss_conf 212222233358888653121356832322221230567---6699886---52110112332101063221122---22
Q gi|254780849|r 245 RPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGD---RRKEVLR---DIAAVVGATVISEEIGLKLEKAT---IA 315 (551)
Q Consensus 245 ~~l~ii~~~~e~~~l~~lv~n~~k~gi~v~~vk~~~~~~---~~~~~L~---dia~~tGa~vi~~~~~~~l~~~~---~~ 315 (551)
T Consensus 250 akiAiLtCPFEPPKpKT------KH~l~i~~~e--~Y~~L~~yE~~kF~EMi~~~K~~Ga~~v~CQWGFDDEANhLLl~~ 321 (541)
T TIGR02343 250 AKIAILTCPFEPPKPKT------KHKLDISSVE--EYKKLQKYEQQKFKEMIDDIKKSGANIVICQWGFDDEANHLLLQN 321 (541)
T ss_pred CEEEEEECCCCCCCCCC------CCEEECCCHH--HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHC
T ss_conf 13878537464226885------4314207878--999999998899888899986424869996378856788898747
Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 24410278980467301377421777765433467
Q gi|254780849|r 316 DLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQ 350 (551)
Q Consensus 316 ~LG~~~~v~i~~~~~~ii~~~~~~~~i~~~i~~l~ 350 (551)
T Consensus 322 ~LPAVRWVgG~elEliAi~TgG---rIVpRF~eL~ 353 (541)
T TIGR02343 322 DLPAVRWVGGQELELIAIATGG---RIVPRFEELS 353 (541)
T ss_pred CCCEEEECCCCCEEHHEECCCC---CCCCCCCCCC
T ss_conf 8972874175520021012288---1511513378