>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

Probab=100.00 E-value=0 Score=729.81 Aligned_cols=464 Identities=21% Similarity=0.287 Sum_probs=383.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 79899999999999999997736789863598885899838832088877760347852257889999999866255188 Q gi|254780849|r 8 LGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTEDSSGD 87 (551) Q Consensus 8 ~g~~a~~~~~~~~~~ia~~i~ttlGP~G~~kmi~~~~g~~~iTnDGaTIlk~l~~~hp~~~~~akll~~~a~~qd~~~GD 87 (551) T Consensus 5 ~~~dar~~ni~a~~~la~~vksTLGPkG~nk~i~~~~G~~~ITnDGvTI~k~i~l~~P----~a~ll~e~a~~q~~~~GD 80 (515) T cd03338 5 KPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHP----AAKMLVELSKAQDIEAGD 80 (515) T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCHHHHHHHCCCCCH----HHHHHHHHHHHHHHHHCC T ss_conf 7999999999999999998627759887808998899995895369999987537497----999999999851225268 Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHH------HHHH Q ss_conf 6667999999999999999976988999999898644777767653222127--6024222122555334------5688 Q gi|254780849|r 88 GTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVG--SREEIIQVATISANGD------REIG 159 (551) Q Consensus 88 GTTtvvvLa~eLL~~a~~Li~~gihP~~Ii~G~~~a~~~al~~L~~~s~~i~--~~~~L~~vA~tS~~~~------~~l~ 159 (551) T Consensus 81 GTTt~vvLa~~ll~~~~~li~~g~~p~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~ 160 (515) T cd03338 81 GTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLA 160 (515) T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 76699999999999999999879975789999999999999999972577788989999999887400056665899999 Q ss_pred HHHHHHHHHCCCCC---------HHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCC Q ss_conf 89999998424320---------001101465520333302320011224765423310134441131022013564410 Q gi|254780849|r 160 EKIAYAMEQIGPHG---------IITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISAL 230 (551) Q Consensus 160 ~li~~A~~~i~~d~---------vi~i~~~~~~~~d~~li~G~~id~g~~~~~fi~~~~~~~~~~~n~~Ili~d~~Le~~ 230 (551) T Consensus 161 ~l~~~a~~~v~~~~~~~~~d~~~i~ii~~~gg~~~d~~~i~G~~~~~~~~~~------~~~~~~~~~~~I~l~~~~l~~~ 234 (515) T cd03338 161 PIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKK------AGGPTRIEKAKIGLIQFCLSPP 234 (515) T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCC------CCCCCCCHHHHHHHHCCCCCCH T ss_conf 9999888302557776533221048999528731212354026972531037------8886001408877530155510 Q ss_pred CCCHHHHH------------------------HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHH Q ss_conf 01114677------------------------531116212222233358888653121356832322221230567669 Q gi|254780849|r 231 QPLLPILE------------------------SATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRK 286 (551) Q Consensus 231 ~~~~~~le------------------------~~~~~~~~l~ii~~~~e~~~l~~lv~n~~k~gi~v~~vk~~~~~~~~~ 286 (551) T Consensus 235 k~~~~~~i~~~~~~~~~~~~~~e~~~i~~~~~~i~~~g~~vv~~~~~i~~~~i~d~~~~~l~-~~~i~~v-----~~v~~ 308 (515) T cd03338 235 KTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLA-KLKIMVV-----KDIER 308 (515) T ss_pred HHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHC-CCCEEEE-----CCCCH T ss_conf 23214621138999999999989999999999999709986997102344346678886512-1570354-----33468 Q ss_pred HHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH Q ss_conf 98865211011233210106322112222244102789804673013774217777654334677654135631111012 Q gi|254780849|r 287 EVLRDIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRDKLK 366 (551) Q Consensus 287 ~~L~dia~~tGa~vi~~~~~~~l~~~~~~~LG~~~~v~i~~~~~~ii~~~~~~~~i~~~i~~l~~~ie~~~~~~~~~~~~ 366 (551) T Consensus 309 ~dl~~ia~~tg~~~i~-----~~~~~~~~~lg~~~~v~~~~------------------------------~~~~~~~~~ 353 (515) T cd03338 309 EEIEFICKTIGCKPVA-----SIDHFTEDKLGSADLVEEVS------------------------------LGDGKIVKI 353 (515) T ss_pred HHHHHHHHHHCCEEEC-----CHHHCCHHHCCCCCCCEEEE------------------------------ECCCEEEEE T ss_conf 8899999982987715-----63008987682466745898------------------------------568469999 Q ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHH Q ss_conf 2210233443212567653146898988778899998754027-8105553799999999745089--968999999999 Q gi|254780849|r 367 ERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDE-GIVPGGGIALVRAAQALSVKGD--NEDQCAGIEIVR 443 (551) Q Consensus 367 er~~~l~g~~~tI~vgg~t~~~~~E~~r~~~DAl~v~~~~~~~-~vvpGGGa~e~~ls~~l~~~~~--~~~~~~~i~~fa 443 (551) T Consensus 354 ~~-~~~~~~~~tI~v~G~t~~~~~E~~~~i~DAl~a~k~ai~~~~ivpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a 432 (515) T cd03338 354 TG-VKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFA 432 (515) T ss_pred EE-CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 96-57667856999826607789999998776699999998588804475099998999999863347617899999999 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCC---CCCEEEECCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999977999899999998168---986658866872721388398370478999999999999986609999 Q gi|254780849|r 444 KALSYPCRQIIKNAGDESELIVSKIQESK---TANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAV 520 (551) Q Consensus 444 ~AL~~ip~~La~NaG~d~~~~i~~l~~~~---~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iLriD~i 520 (551) T Consensus 433 ~aL~~ip~~La~NAG~d~~~vl~kl~~~~~~~~~~~G~d~~~g~~~dm~~~GIiDP~~v~~~al~~A~~~a~~iLriD~i 512 (515) T cd03338 433 DALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDI 512 (515) T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999976997999999999998557998889767993726886879365899999999899999999867896 Q ss_pred HHC Q ss_conf 715 Q gi|254780849|r 521 VVD 523 (551) Q Consensus 521 I~~ 523 (551) T Consensus 513 I~a 515 (515) T cd03338 513 VLA 515 (515) T ss_pred EEC T ss_conf 249

HHsearch alignment for GI: 254780849 and conserved domain: cd03338