HHsearch alignment for GI: 254780849 and conserved domain: cd03342
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=0 Score=733.73 Aligned_cols=454 Identities=21% Similarity=0.308 Sum_probs=387.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 79899999999999999997736789863598885899838832088877760347852257889999999866255188
Q gi|254780849|r 8 LGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTEDSSGD 87 (551)
Q Consensus 8 ~g~~a~~~~~~~~~~ia~~i~ttlGP~G~~kmi~~~~g~~~iTnDGaTIlk~l~~~hp~~~~~akll~~~a~~qd~~~GD 87 (551)
T Consensus 9 ~~~~a~~~Ni~a~~~lad~vktTLGPkG~~kmi~~~~g~~~ITnDG~TI~k~i~~~hP----~a~ll~~~a~~q~~~~GD 84 (484)
T cd03342 9 RRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHP----TASMIARAATAQDDITGD 84 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCHHHHHHHCCCCCH----HHHHHHHHHHHHHHHHCC
T ss_conf 6988999999999999998737759886849999899984796359999986637597----999999999963446468
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHH------HHH
Q ss_conf 66679999999999999999769889999998986447777676532221276---024222122555334------568
Q gi|254780849|r 88 GTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVGS---REEIIQVATISANGD------REI 158 (551)
Q Consensus 88 GTTtvvvLa~eLL~~a~~Li~~gihP~~Ii~G~~~a~~~al~~L~~~s~~i~~---~~~L~~vA~tS~~~~------~~l 158 (551)
T Consensus 85 GTTt~vvLa~~ll~~~~~li~~G~~p~~I~~G~~~a~~~~~~~L~~~~~~v~~~~d~~~l~~va~ts~~sk~~~~~~~~l 164 (484)
T cd03342 85 GTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQL 164 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 87789999999999999999869976899999999999999999984667778646999999987046505568999999
Q ss_pred HHHHHHHHHHCCCCC-------HHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCC
Q ss_conf 889999998424320-------0011014655203333023200112247654233101344411310220135644100
Q gi|254780849|r 159 GEKIAYAMEQIGPHG-------IITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQ 231 (551)
Q Consensus 159 ~~li~~A~~~i~~d~-------vi~i~~~~~~~~d~~li~G~~id~g~~~~~fi~~~~~~~~~~~n~~Ili~d~~Le~~~ 231 (551)
T Consensus 165 ~~i~~~av~~i~~~~~~~d~~~v~i~~~~~g~~~~s~li~G~v~~~~~~~~-------~~~~~~~n~~Ili~~~~le~~k 237 (484)
T cd03342 165 TEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHP-------DMPKRVENAYILTCNVSLEYEK 237 (484)
T ss_pred HHHHHHHHHEECCCCCCCCCHHEEEEEECCCCCCCHHHEEEEEECCCCCCC-------CCCCCCCCCEEEEECCCCCCHH
T ss_conf 999999872000489745530147887238765312103113632566788-------8742126757998446643101
Q ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCC
Q ss_conf 11146775311162122222333588886531213568323222212305676699886521101123321010632211
Q gi|254780849|r 232 PLLPILESATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVISEEIGLKLEK 311 (551)
Q Consensus 232 ~~~~~le~~~~~~~~l~ii~~~~e~~~l~~lv~n~~k~gi~v~~vk~~~~~~~~~~~L~dia~~tGa~vi~~~~~~~l~~ 311 (551)
T Consensus 238 ~e~~-----~~~~~~vvi~~~~i~~~al~~l~~~~------I~~~~-----~~~~~~le~ia~~tGa~~i~-----~~~~ 296 (484)
T cd03342 238 TEVN-----SGFFYSVVINQKGIDPPSLDMLAKEG------ILALR-----RAKRRNMERLTLACGGVAMN-----SVDD 296 (484)
T ss_pred HHHH-----HCCCCEEEEECCCCCHHHHHHHHHCC------CEEEE-----HHHHHHHHHHHHHCCCEEEC-----CCCC
T ss_conf 7666-----30464699987867589999999859------80320-----22287899999971997735-----4122
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 22222441027898046730137742177776543346776541356311110122210233443212567653146898
Q gi|254780849|r 312 ATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGE 391 (551)
Q Consensus 312 ~~~~~LG~~~~v~i~~~~~~ii~~~~~~~~i~~~i~~l~~~ie~~~~~~~~~~~~er~~~l~g~~~tI~vgg~t~~~~~E 391 (551)
T Consensus 297 ~~~~~lG~~~~v~~~~i-----g-------------------------~~~~~~i~~~~--~~~~~tI~irG~t~~~l~E 344 (484)
T cd03342 297 LSPECLGYAGLVYERTL-----G-------------------------EEKYTFIEGVK--NPKSCTILIKGPNDHTITQ 344 (484)
T ss_pred CCHHHCCCCCCCEEEEE-----C-------------------------CCEEEEEECCC--CCCEEEEEECCCHHHHHHH
T ss_conf 99887565786389987-----7-------------------------83289998689--8854799981724889999
Q ss_pred HHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9887788999987540278-105553799999999745089--9689999999999999999999997799989999999
Q gi|254780849|r 392 KKDRYQDSLDATRAASDEG-IVPGGGIALVRAAQALSVKGD--NEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKI 468 (551)
Q Consensus 392 ~~r~~~DAl~v~~~~~~~~-vvpGGGa~e~~ls~~l~~~~~--~~~~~~~i~~fa~AL~~ip~~La~NaG~d~~~~i~~l 468 (551)
T Consensus 345 ~~r~i~DAl~a~k~ai~eg~ivpGGGa~e~~ls~~L~~~~~~~~~~e~~~i~~~a~AL~~ip~~La~NAG~d~~~vl~~l 424 (484)
T cd03342 345 IKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKL 424 (484)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 98777668999999982898863745999999999997644587389999999999999999999998799778999999
Q ss_pred HHCC---CCCEEEECCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8168---98665886687272138839837047899999999999998660999971587
Q gi|254780849|r 469 QESK---TANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAP 525 (551)
Q Consensus 469 ~~~~---~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iLriD~iI~~~~ 525 (551)
T Consensus 425 ~~~~~~~~~~~G~d~~~g~~~dm~~~gIiDP~~vk~~al~~A~~~A~~iL~iD~iI~a~~ 484 (484)
T cd03342 425 QDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAGR 484 (484)
T ss_pred HHHHHCCCCCEEEECCCCCEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999965799778974689571687576836699999999989999999998899605687