RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus
Liberibacter asiaticus str. psy62]
(551 letters)
>gnl|CDD|48161 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis..
Length = 520
Score = 714 bits (1845), Expect = 0.0
Identities = 322/521 (61%), Positives = 404/521 (77%), Gaps = 2/521 (0%)
Query: 4 KDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFK 63
KDIK G AR A+ GVN LA+AVK TLGPKGR V+I SFG+P++TKDGVTVAK I +
Sbjct: 1 KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELE 60
Query: 64 NHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLA 123
+ F +GA+++++VA+ T D +GDGTTTAT LA+AI EG K V AG NPMD+KRGI+ A
Sbjct: 61 DPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKA 120
Query: 124 VQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAKTA 183
V+ VVE LK K V ++EEI QVATISANGD EIGE IA AME++G G+IT+++ KT
Sbjct: 121 VEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTL 180
Query: 184 TTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESATQS 243
TE+ VV+GMQ DRGY+SPYFVT E+M E+ENPYIL+ DKKIS++Q LLPILE ++
Sbjct: 181 ETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKA 240
Query: 244 GRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVISE 303
GRPL IIAEDVEG+ALATLVVN++R GL V AVKAP FGDRRK +L DIA + G TVISE
Sbjct: 241 GRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISE 300
Query: 304 EIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRD 363
E+GLKLE T+ DLG AKKVV++KDDTTI+GG G I+ RI +I+K IE+T SDYD++
Sbjct: 301 ELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKE 360
Query: 364 KLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALVRAA 423
KL+ERLAKL+GGVAV++VG TE L EKKDR +D+L+ATRAA +EGIVPGGG+AL+RA+
Sbjct: 361 KLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRAS 420
Query: 424 QAL-SVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYNAQK 482
AL +K N D+ GIEIVR+AL P RQI +NAG + ++V K+ ES +GY+A
Sbjct: 421 PALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESP-DGFGYDAAT 479
Query: 483 SVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVD 523
+ DM E GIIDP KVVR+ALQ+A S+A ++L TEA+VVD
Sbjct: 480 GEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVVD 520
>gnl|CDD|35577 KOG0356, KOG0356, KOG0356, Mitochondrial chaperonin, Cpn60/Hsp60p
[Posttranslational modification, protein turnover,
chaperones].
Length = 550
Score = 552 bits (1423), Expect = e-157
Identities = 287/543 (52%), Positives = 385/543 (70%), Gaps = 10/543 (1%)
Query: 2 AAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSIS 61
AKDIK G R + GV+ LA+AV TLGPKGR VII S+G+P+VTKDGVTVAKSI
Sbjct: 15 YAKDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIE 74
Query: 62 FKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGID 121
K+ + +GA++++DVA NT + +GDGTTTAT LA+AI EG + V G NP++I+RGI
Sbjct: 75 LKDKYENIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIM 134
Query: 122 LAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAK 181
LAV VV+ LK K V + EEI QVATISANGD+EIG I+ AM+++G G+IT+ K
Sbjct: 135 LAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGK 194
Query: 182 TATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESAT 241
T E+ V++GM+ DRGYISPYF+TS+++ E EN +L+ +KKIS++Q ++P LE A
Sbjct: 195 TLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELAL 254
Query: 242 QSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI 301
RPL IIAED++G+ALATLV+N+++ GL V+AVKAP FGD RK +L+DIA + GATV
Sbjct: 255 AKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVF 314
Query: 302 SEEIG-LKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360
EE+ L LE A + DLG +VV++KDDT ++ G G ++EGRI +I++ IE+T SDY
Sbjct: 315 GEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDY 374
Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420
+++KL ERLAKL+GGVAV++VG +E + EKKDR +D+L+ATRAA +EGIVPGGG AL+
Sbjct: 375 EKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALL 434
Query: 421 RAAQALS--VKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGY 478
RA L +N DQ G+EIV+KAL P + I KNAG + ++V K+ +YGY
Sbjct: 435 RAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLND---DYGY 491
Query: 479 NAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGG 538
+A K + D+ E GIIDP KVVR AL A +A ++ TEAVV + PK+E GG
Sbjct: 492 DAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEEA----GNPGG 547
Query: 539 GMG 541
GMG
Sbjct: 548 GMG 550
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 542 bits (1397), Expect = e-154
Identities = 251/530 (47%), Positives = 360/530 (67%), Gaps = 6/530 (1%)
Query: 3 AKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISF 62
+K I AR A+ G++ LAEAV TLGPKGR V++ +G+P++ DGVT+AK I
Sbjct: 2 SKKILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIEL 61
Query: 63 KNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDL 122
++H G +IR A+ T D +GDGTTTAT LA AI +G K V AG NP+ +KRGI+
Sbjct: 62 EDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEK 121
Query: 123 AVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAKT 182
A Q VV + + V + I QVA+ISA D E+G IA A+E++G G+I++++ K+
Sbjct: 122 ATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKS 181
Query: 183 ATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISAL-QPLLPILESAT 241
TE+ + +GM+ ++G+ISPYFVT TERM ENPYIL+ DKKI+ + Q LLPILE T
Sbjct: 182 TVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVT 241
Query: 242 QSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI 301
++ RPL IIAEDVE +ALATLV+N++R + V+AV+AP FGDRRK +L DIA + G VI
Sbjct: 242 KTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVI 301
Query: 302 SEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYD 361
+E+ GL LE + LG A++++++KD TTI+ +G E+++ R +++K IE S Y+
Sbjct: 302 TEDAGLSLETIQLDLLGQARRIIVTKDSTTII-ADGNEEQVKARCEQLRKQIEIADSSYE 360
Query: 362 RDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALVR 421
++KL+ERLAKL+GGVAV++VG TE + +KK R +D+++AT+AA +EGIVPGGG LV
Sbjct: 361 KEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVH 420
Query: 422 AAQALSVKGDN---EDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGY 478
++ L N ED+ G IV +A+ P ++I +NAG +I+ K+QE + GY
Sbjct: 421 LSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQE-QDFEIGY 479
Query: 479 NAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDE 528
NA + F +M+E GIIDP KV R+ALQ+A S+A M+L TE ++VD +
Sbjct: 480 NAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKKESS 529
>gnl|CDD|30807 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 431 bits (1109), Expect = e-121
Identities = 233/550 (42%), Positives = 317/550 (57%), Gaps = 42/550 (7%)
Query: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60
M K+ K G AR + LA+AVK TLGPKGR ++ +S G +T DGVT+ K I
Sbjct: 1 MMGKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEI 60
Query: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120
++ GA+++ +VA +D +GDGTTTA LA A+ E K + AG++P IKRG
Sbjct: 61 ELEH----PGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGY 116
Query: 121 DLAVQEVVEYLKANHKKVGSRE-----EIIQVATISANGDREIGEKIAYAMEQIGP---- 171
LAV++ VE LK K V E I VA+ SAN D EIGE + A+E++G
Sbjct: 117 RLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSD 176
Query: 172 -HGIITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISAL 230
GII + ++ + TE+ VV+GM D+GY+SPYF+ +ENP IL+ DKK+
Sbjct: 177 LDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDK-----RLENPKILLLDKKLEIK 231
Query: 231 QPLLPILESATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLR 290
+P LP LE SG+PL IIAED EG+ALATLVVN +R G V+ VKAP D K L
Sbjct: 232 KPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLE 290
Query: 291 DIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQ 350
DIA + G V E++G +L K LG AK V + KD TTIV G G + +E
Sbjct: 291 DIAILTGRRVKKEDLGERLAK-----LGGAKIVSVLKDLTTIVLGEGAAGLVE------- 338
Query: 351 KAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEG 410
E DYD +KL+ER AK AGGVA + V TE L EK+ R +D+L+ RAA +EG
Sbjct: 339 ---ETKTGDYDMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEG 394
Query: 411 -IVPGGGIALVRAAQALSVKGDN---EDQCAGIEIVRKALSYPCRQIIKNAGDESELIVS 466
IVPGGG A + AA L D+ GIE +AL P RQ+ +NAG + ++S
Sbjct: 395 KIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLS 454
Query: 467 KIQESK-TANYGYNAQK-SVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDA 524
K++ + T NYG +A DM E GIIDP+KV R+AL++A AG++L + ++
Sbjct: 455 KLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAK 514
Query: 525 PKDETASPQM 534
P+++ +P
Sbjct: 515 PEEKKPAPPG 524
>gnl|CDD|143893 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 340 bits (874), Expect = 7e-94
Identities = 160/545 (29%), Positives = 255/545 (46%), Gaps = 106/545 (19%)
Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82
LA+AVK TLGPKGR ++ N G +T DG T+ K I ++ A+++ + A + +
Sbjct: 1 LADAVKTTLGPKGRNKMLVNHGGKITITNDGATILKEIEIQHPA----AKLLVEAAKSQD 56
Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKV-GSR 141
+ GDGTTTA LA + E K + AG++P DI RG +LA++ ++ L+ V
Sbjct: 57 EEVGDGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDD 116
Query: 142 EEIIQVATISANGD------REIGEKIAYAM------EQIGPHGIITIDQAKTATTEVRV 189
E+++ VA S N +G+ + A+ +G G+I I+ +E +
Sbjct: 117 EDLLNVARTSLNSKISSRESELLGKLVVDAVLLIIEKFDVGNIGVIKIEGGSLEDSE--L 174
Query: 190 VQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQP----------------- 232
++G+ +D+GY+SP M +ENP IL+ D + +
Sbjct: 175 IEGIVLDKGYLSP-------DMPKRLENPKILLLDCPLEYEKTEKVIISTAEELERLLEA 227
Query: 233 ----LLPILESATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEV 288
LLP+LE +G L II + ++ AL L N + V +KE
Sbjct: 228 EEKQLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGILALRRV-----------KKED 276
Query: 289 LRDIAAVVGATVISEEIGLKLEKATIADLGSAKKV---VMSKDDTTIVGGNGPSERIEGR 345
L +A GATV+S L+ + +LGSA KV + +D TT + G
Sbjct: 277 LERLAKATGATVVSSLDDLEPD-----ELGSAGKVEEREIGEDKTTFIEG---------- 321
Query: 346 INEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRA 405
L+G VA + + T+ L E + +D+L+A +A
Sbjct: 322 -------------------------CLSGKVATILLRGATDHELDELERAIEDALNAVKA 356
Query: 406 A-SDEGIVPGGGIALVRAAQALS--VKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESE 462
A DEG+VPGGG A + ++AL K + + GIE +AL R + +NAG +
Sbjct: 357 ALKDEGVVPGGGAAELELSRALREYAKSVSGKEQLGIEAFAEALEVIPRTLAENAGLDPI 416
Query: 463 LIVSKIQE--SKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAV 520
+++K++ K N G +A GDM E GIIDP+KV R+AL+SA +A ++L + +
Sbjct: 417 EVLAKLKAAHKKGNNLGIDADTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLILTIDQI 476
Query: 521 VVDAP 525
+ P
Sbjct: 477 IKAKP 481
>gnl|CDD|73189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis..
Length = 464
Score = 333 bits (856), Expect = 8e-92
Identities = 171/545 (31%), Positives = 253/545 (46%), Gaps = 107/545 (19%)
Query: 4 KDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFK 63
K+ + G AR + LA+AVK TLGPKG ++ +S G P +T DG T+ K I +
Sbjct: 1 KEREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVE 60
Query: 64 NHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLA 123
+ A+++ +VA + +D GDGTTT LA + E K + AG++P +I RG + A
Sbjct: 61 H----PAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKA 116
Query: 124 VQEVVEYLK--ANHKKVGSREEIIQVATISAN------GDREIGEKIAYAMEQIGP---- 171
V++ +E LK A V REE+++VAT S N GD +GE + A+ ++G
Sbjct: 117 VEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGD 176
Query: 172 --HGIITIDQAKTAT-TEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKIS 228
G+I +++ K + + +V GM D+GY+SPY M +EN IL+ D K+
Sbjct: 177 VDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPY-------MPKRLENAKILLLDCKLE 229
Query: 229 ALQPLLPILESATQSGRPLCIIAED-VEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKE 287
+ +IAE ++ +AL L ++AV+ RKE
Sbjct: 230 YV------------------VIAEKGIDDEALHYLAKLG------IMAVRR-----VRKE 260
Query: 288 VLRDIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSK----DDTTIVGGNGPSERIE 343
L IA GAT++S LE T DLG+A V +K T I G G
Sbjct: 261 DLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG------ 309
Query: 344 GRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDAT 403
G VA + + TE L E + D+L A
Sbjct: 310 ------------------------------GKVATILLRGATEVELDEAERSLHDALCAV 339
Query: 404 RAA-SDEGIVPGGGIALVRAAQALS--VKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDE 460
RAA D GIVPGGG A + ++AL K + GIE AL R + +NAG +
Sbjct: 340 RAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLD 399
Query: 461 SELIVSKIQESKTA---NYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLIT 517
+V+K++ N G + + DM E GIIDP+KV R AL+SA A ++L
Sbjct: 400 PIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTI 459
Query: 518 EAVVV 522
+ ++V
Sbjct: 460 DDIIV 464
>gnl|CDD|73350 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains..
Length = 209
Score = 102 bits (257), Expect = 2e-22
Identities = 73/286 (25%), Positives = 110/286 (38%), Gaps = 94/286 (32%)
Query: 141 REEIIQVATISAN-----GDREIGEKIAYAMEQIGP------HGIITIDQAKTAT-TEVR 188
RE ++QVAT S N D +G+ + A+ ++GP G+I +++ + +
Sbjct: 1 RELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSE 60
Query: 189 VVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESATQSGRPLC 248
+V G+ D+GY SPY M +EN IL+ D + +
Sbjct: 61 LVVGVVFDKGYASPY-------MPKRLENAKILLLDCPLEYV------------------ 95
Query: 249 IIAED-VEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVISEEIGL 307
+IAE ++ AL L + +AV+ +KE L IA GAT++S
Sbjct: 96 VIAEKGIDDLALHYLAKAGI------MAVRR-----VKKEDLERIARATGATIVSS---- 140
Query: 308 KLEKATIADLGSAKKVVMSKD----DTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRD 363
LE T DLG+A+ V +K T I G G
Sbjct: 141 -LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKG-------------------------- 173
Query: 364 KLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDE 409
G A + + TE L E K D+L A RAA +E
Sbjct: 174 ----------GKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209
>gnl|CDD|48160 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis..
Length = 517
Score = 97.2 bits (242), Expect = 9e-21
Identities = 128/534 (23%), Positives = 216/534 (40%), Gaps = 91/534 (17%)
Query: 22 TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNT 81
+AEAV+ TLGPKG ++ +S G +T DG T+ K + ++ A+M+ +VA
Sbjct: 26 AVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHP----AAKMLVEVAKTQ 81
Query: 82 EDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVG-- 139
++ GDGTTTA LA + + + ++P I G LA ++ +E L KV
Sbjct: 82 DEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPD 141
Query: 140 SREEIIQVATISANG-----DREIGEKIAY-----AMEQIGPHGIITIDQAKT------A 183
++ + ++A S G ++ + E+ ++ +D K +
Sbjct: 142 DKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGS 201
Query: 184 TTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPI---LESA 240
+ +++G+ ID+ + P M VEN I + D + + + + S
Sbjct: 202 VDDTELIRGIVIDKEVVHP-------GMPKRVENAKIALLDAPLEVKKTEIDAKIRITSP 254
Query: 241 TQSGRPLCIIAEDVEG--DALATLVVNRVRC--GLPVLA----VKAPAFGDRR--KEVLR 290
Q L ++ D +A N V C G+ LA KA RR K +
Sbjct: 255 DQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDME 314
Query: 291 DIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQ 350
+A GA +++ ++ T DLG A+ V
Sbjct: 315 KLARATGAKIVT-----NIDDLTPEDLGEAELV--------------------------- 342
Query: 351 KAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEG 410
+ + D + K V +L G TE + E + +D+L A ++G
Sbjct: 343 ----EERKVGDDKMVFVEGCKNPKAVTILLRGG-TEHVVDELERALEDALRVVADALEDG 397
Query: 411 -IVPGGGIALVRAAQAL-----SVKGDNEDQCAGIEIVRKALSYPCRQIIKNAG-DESEL 463
+V GGG + A+ L SV G +Q A +E AL R + +NAG D +
Sbjct: 398 KVVAGGGAVEIELAKRLREYARSVGG--REQLA-VEAFADALEEIPRTLAENAGLDPIDT 454
Query: 464 IVS--KIQESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMML 515
+V E N G + DM E G+I+P++V + A++SA A M+L
Sbjct: 455 LVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMIL 508
>gnl|CDD|73353 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin..
Length = 484
Score = 74.8 bits (184), Expect = 6e-14
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 32/232 (13%)
Query: 12 ARDAIAYGVN-----TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHF 66
R A VN L + +K LGPKG ++ + G ++TKDG + + ++
Sbjct: 8 LRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPT 67
Query: 67 HEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQE 126
A MI AT +D +GDGTT+ L + + +Y+ G++P I G +LA +
Sbjct: 68 ----ASMIARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNK 123
Query: 127 VVEYL---KANHKKVGSREEIIQVA--TISANGDREIGEKIAYAM-----------EQIG 170
+++L K + RE ++ VA ++ ++ +++ + E I
Sbjct: 124 ALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPID 183
Query: 171 PHGIITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILI 222
H + + + ++ ++++G+ +D G P M VEN YIL
Sbjct: 184 LHMVEIMQMQHKSDSDTKLIRGLVLDHGARHP-------DMPKRVENAYILT 228
Score = 44.0 bits (104), Expect = 1e-04
Identities = 51/204 (25%), Positives = 73/204 (35%), Gaps = 52/204 (25%)
Query: 367 ERLAKLAGGVAVLEVGDVTEAALG------------EK---------------------- 392
ERL GGVA+ V D++ LG EK
Sbjct: 280 ERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPND 339
Query: 393 ------KDRYQDSLDATRAA-SDEGIVPGGGIALVRAAQAL-----SVKGDNEDQCAGIE 440
KD +D L A + A D+ +VPG G V L SVKG + G++
Sbjct: 340 HTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAK---LGVQ 396
Query: 441 IVRKALSYPCRQIIKNAG-DESELIVSKIQESKTAN--YGYNAQKSVFGDMFEMGIIDPV 497
AL + + +N+G D E +V E G + D GI D
Sbjct: 397 AFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNY 456
Query: 498 KVVRNALQSAGSLAGMMLITEAVV 521
V R L SA +A +L+ + ++
Sbjct: 457 SVKRQILHSATVIASQLLLVDEII 480
>gnl|CDD|48153 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin..
Length = 517
Score = 68.0 bits (166), Expect = 7e-12
Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 9 GTAARDAIAYGVNTLAEAVKCTLGPKG--RCVIIGNSFGAPRVTKDGVTVAKSISFKNHF 66
G AR + G + + VK TLGPKG + + G VT DG T+ KSI N
Sbjct: 11 GETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDN-- 68
Query: 67 HEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQE 126
A+++ D++ +D GDGTT+ T LA + E K V ++P I G +A
Sbjct: 69 --PAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAA 126
Query: 127 VVEYLKANHKKVGSREE 143
E L ++ S EE
Sbjct: 127 AREALLSSAVDHSSDEE 143
Score = 44.8 bits (106), Expect = 6e-05
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Query: 385 TEAALGEKKDRYQDSLDA-TRAASDEGIVPGGGIALVRAAQALSVKGDNED--QCAGIEI 441
++ L E + D+L + D +V GGG + + A+A+ + IE
Sbjct: 369 SQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEA 428
Query: 442 VRKALSYPCRQIIKNAGDESELIVSKIQESKTA---NYGYNAQKSVFGDMFEMGIIDPVK 498
KAL I NAG +S +V++++ + G + +K GDM E+GI + K
Sbjct: 429 FAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFK 488
Query: 499 VVRNALQSAGSLAGMMLITEAVVVDAPK 526
V R L SA A M+L + ++ AP+
Sbjct: 489 VKRQVLLSASEAAEMILRVDDIIKCAPR 516
>gnl|CDD|35584 KOG0363, KOG0363, KOG0363, Chaperonin complex component, TCP-1 beta
subunit (CCT2) [Posttranslational modification, protein
turnover, chaperones].
Length = 527
Score = 66.9 bits (163), Expect = 1e-11
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 9 GTAARDAIAYGVNTLAEAVKCTLGPKG--RCVIIGNSFGAPRVTKDGVTVAKSISFKNHF 66
G AR + G + + VK TLGPKG + + G VT DG T+ KSI N
Sbjct: 16 GENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDN-- 73
Query: 67 HEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQE 126
A+++ D++ +D GDGTT+ T LA + E K V ++P I G +A
Sbjct: 74 --PAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAA 131
Query: 127 VVEYLKA-----NHKKVGSREEIIQVA 148
+E L + K RE+++++A
Sbjct: 132 ALEALTKSSIDNSSDKEKFREDLLKIA 158
Score = 47.3 bits (112), Expect = 1e-05
Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 385 TEAALGEKKDRYQDSLDA-TRAASDEGIVPGGGIALVRAAQALSVKGDNED--QCAGIEI 441
T+ L E + D+L + + +V GGG + + A+A+ + + IE
Sbjct: 374 TQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEA 433
Query: 442 VRKALSYPCRQIIKNAGDESELIVSKIQE---SKTANYGYNAQKSVFGDMFEMGIIDPVK 498
+AL I NAG +S +V++++ + G + + GDM E+GI++ +K
Sbjct: 434 FARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLK 493
Query: 499 VVRNALQSAGSLAGMMLITEAVVVDAPKDET 529
V + + SA A M+L + ++ AP++
Sbjct: 494 VKQAVVSSASEAAEMILRVDNIIKAAPRERE 524
>gnl|CDD|35580 KOG0359, KOG0359, KOG0359, Chaperonin complex component, TCP-1 zeta
subunit (CCT6) [Posttranslational modification, protein
turnover, chaperones].
Length = 520
Score = 65.4 bits (159), Expect = 4e-11
Identities = 116/525 (22%), Positives = 206/525 (39%), Gaps = 65/525 (12%)
Query: 22 TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNT 81
L + LGPKG ++ + G ++ KDG + K + ++ A +I VAT
Sbjct: 28 GLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHP----TASLIAKVATAQ 83
Query: 82 EDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVGSR 141
+D +GDGTT+ L + + +Y++ GL+P I G + A + +E+L+ ++V R
Sbjct: 84 DDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREV-DR 142
Query: 142 EEIIQVA--TISANGDREIGEKIAYAM-----------EQIGPHGIITIDQAKTATTEVR 188
E + VA ++ E+ + + + E I + ++ + +
Sbjct: 143 ETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTS 202
Query: 189 VVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLP---ILESATQSGR 245
+VQG+ +D G P M VE+ YILI + + +P + +A +
Sbjct: 203 LVQGLVLDHGARHP-------DMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREV 255
Query: 246 PLCIIAEDVEGDALATLVVNRVRCGLPVLAVKA--PAFGDRRKEVLRDIAAVVGATVISE 303
+ + ++ + + R C V+ K P D A G +
Sbjct: 256 LVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSL--------DSLAKSGILALRR 307
Query: 304 EIGLKLEKATIADLGSAKKVVMSKDDTT--IVGGNGP-SERIEGRINEIQKAIEDTKSDY 360
+E+ +A G A V S DD T +G G E G E IE +
Sbjct: 308 AKRRNMERLVLACGGEA---VNSVDDLTPDYLGYAGLVYEYTLG--EEKFTFIEKCNN-- 360
Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAA-SDEGIVPGGGIAL 419
V +L G + + + KD +D L A + D+ +PG G
Sbjct: 361 ------------PSSVTILIKGP-NKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFE 407
Query: 420 VRAAQALSVKGDNEDQCA--GIEIVRKALSYPCRQIIKNAG-DESELIVSKIQESKTANY 476
V + L + A G++ AL + + KN+G DE E +VS +E +
Sbjct: 408 VALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLR 467
Query: 477 GYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVV 521
G + + D GI D V + L+S +A +L+ + ++
Sbjct: 468 GLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEII 512
>gnl|CDD|48157 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin..
Length = 522
Score = 63.7 bits (155), Expect = 1e-10
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82
+A+AV+ TLGP+G +I + G ++ DG T+ K + + H A+ + D+A + +
Sbjct: 28 IADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLL---DIVHPA-AKTLVDIAKSQD 83
Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLK 132
GDGTT+ LA E + ++ G++P I RG A+Q +E +K
Sbjct: 84 AEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIK 133
Score = 43.7 bits (103), Expect = 1e-04
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 404 RAASDEGIVPGGG---IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDE 460
RA ++ +V GGG + L + + S + Q I KAL RQ+ NAG +
Sbjct: 394 RAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLV-INAFAKALEIIPRQLCDNAGFD 452
Query: 461 SELIVSKIQ----ESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMML 515
+ I++K++ + YG + D FE + +P V NAL +A A ++L
Sbjct: 453 ATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLIL 511
>gnl|CDD|73352 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin..
Length = 472
Score = 63.3 bits (154), Expect = 2e-10
Identities = 100/541 (18%), Positives = 199/541 (36%), Gaps = 125/541 (23%)
Query: 20 VNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVAT 79
L++ + + GP G ++ N VT D T+ + + + H A+++ +
Sbjct: 17 CKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQ---HPA-AKLLVMASQ 72
Query: 80 NTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLK------- 132
E+ GDGT LA + + + + GL+P +I G + A+++ +E L+
Sbjct: 73 MQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKI 132
Query: 133 ANHKKVGSREEIIQVATISANGDRE--IGEKIAYAMEQIGPHGIITIDQAKTATTEVRVV 190
+ + + ++ A S E + +A A + P I + +RVV
Sbjct: 133 EDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFN-----VDNIRVV 187
Query: 191 Q--GMQIDRGYISPYFVTSTERMTA--EVENPYILIY----DKKISALQPLLPILESATQ 242
+ G ++ + V E + V+ + ++ D ++
Sbjct: 188 KILGGSLEDSKVVRGMVFKREPEGSVKRVKKAKVAVFSCPFDIGVN-------------- 233
Query: 243 SGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI- 301
I+A GD LA N+ ++ +K + K LR + VGAT +
Sbjct: 234 -----VIVAGGSVGD-LALHYCNKYG----IMVIKINS-----KFELRRLCRTVGATPLP 278
Query: 302 ------SEEIGLKLEKATIADLGSAKKVVMSKDD------TTIVGGNGPSERIEGRINEI 349
EEIG + + ++G K VV ++ T ++ G + ++++
Sbjct: 279 RLGAPTPEEIG-YCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGA-----TQNILDDV 332
Query: 350 QKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDE 409
++AI+D GV V + D
Sbjct: 333 ERAIDD-------------------GVNVFKS-----------------------LTKDG 350
Query: 410 GIVPGGG---IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVS 466
VPG G I L + + K +Q A I+ +A R + +NAG ++ ++S
Sbjct: 351 RFVPGAGATEIELAKKLKEYGEKTPGLEQYA-IKKFAEAFEVVPRTLAENAGLDATEVLS 409
Query: 467 KI-----QESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVV 521
++ + +K+A + D E GI D + + A++ A A +L + ++
Sbjct: 410 ELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQII 469
Query: 522 V 522
+
Sbjct: 470 M 470
>gnl|CDD|48155 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin..
Length = 515
Score = 63.3 bits (154), Expect = 2e-10
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 6/133 (4%)
Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82
+A+A++ +LGP+G +I G +T DG T+ K + + H A+M+ +++ +
Sbjct: 20 VADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQM---SVLHPA-AKMLVELSKAQD 75
Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVG--S 140
+GDGTT+ LA A+ + + G++P I +A ++ VE L + V
Sbjct: 76 IEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLND 135
Query: 141 REEIIQVATISAN 153
RE +I+ AT S N
Sbjct: 136 RESLIKSATTSLN 148
Score = 33.3 bits (76), Expect = 0.20
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 410 GIVPGGG-----IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELI 464
++PGGG IAL + A ++ G + C + AL + +NAG I
Sbjct: 397 ALIPGGGAPEIEIALQLSEWARTLTGVEQ-YC--VRAFADALEVIPYTLAENAGLNPISI 453
Query: 465 VSKIQE---SKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMML 515
V++++ N G N +K ++ E ++ P+ V +A+ A M+L
Sbjct: 454 VTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMIL 507
>gnl|CDD|35579 KOG0358, KOG0358, KOG0358, Chaperonin complex component, TCP-1
delta subunit (CCT4) [Posttranslational modification,
protein turnover, chaperones].
Length = 534
Score = 61.9 bits (150), Expect = 4e-10
Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 6/154 (3%)
Query: 2 AAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSIS 61
A KD + R + +A+A++ +LGPKG +I G +T DG T+ K ++
Sbjct: 17 AFKDKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMN 76
Query: 62 FKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGID 121
A+M+ +++ + +GDGTT+ LA A+ K + G++P I
Sbjct: 77 V----LHPAAKMLVELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQ 132
Query: 122 LAVQEVVEYLKANHKKV--GSREEIIQVATISAN 153
A ++ V+ L V RE +I+ AT S N
Sbjct: 133 SAAKKAVDILDEMSVPVELSDRESLIKSATTSLN 166
Score = 33.4 bits (76), Expect = 0.18
Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 6/175 (3%)
Query: 353 IEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRA-ASDEGI 411
+E+T S + +K + AG + + + L E + D+L R +
Sbjct: 357 VEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRAL 416
Query: 412 VPGGGIALVRAAQALSVKGDNEDQCAG--IEIVRKALSYPCRQIIKNAGDESELIVSKIQ 469
+ GGG + A LS + AL + +NAG V++++
Sbjct: 417 IAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELR 476
Query: 470 ---ESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVV 521
N G N +K ++ E ++ P+ V +A+ A +L + +V
Sbjct: 477 NRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIV 531
>gnl|CDD|35582 KOG0361, KOG0361, KOG0361, Chaperonin complex component, TCP-1 eta
subunit (CCT7) [Posttranslational modification, protein
turnover, chaperones].
Length = 543
Score = 59.6 bits (144), Expect = 2e-09
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82
+AEA++ TLGP+G +I +S G ++ DG T+ K + + H A+ + D+A + +
Sbjct: 32 VAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLL---DIVHPA-AKTLVDIARSQD 87
Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLK 132
GDGTT+ LA E + ++ G++P I R A Q VE +K
Sbjct: 88 AEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIK 137
Score = 53.0 bits (127), Expect = 2e-07
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 404 RAASDEGIVPGGG---IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDE 460
RA ++ +V GGG + L + + S + Q I KAL RQ+ NAG +
Sbjct: 398 RALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQ-LFINAYAKALEVIPRQLCDNAGFD 456
Query: 461 SELIVSKIQESKT---ANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLIT 517
+ I++K+++ YG + D FE + +P V NA+ +A A ++L
Sbjct: 457 ATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSV 516
Query: 518 EAVVVDAPKDETASPQMPAGGGMGGGMGG 546
+ + PK ++A P AG G G G
Sbjct: 517 DETIK-NPKSQSAPP-SAAGRGRGRGRPR 543
>gnl|CDD|48152 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin..
Length = 527
Score = 58.7 bits (142), Expect = 4e-09
Identities = 125/562 (22%), Positives = 212/562 (37%), Gaps = 117/562 (20%)
Query: 9 GTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHE 68
G R +A VK +LGP G ++ + G +T DG T+ K + ++
Sbjct: 6 GQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP--- 62
Query: 69 VGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVV 128
A+++ ++A + GDGTT+ +A + + V ++P I G LA +E V
Sbjct: 63 -AAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAV 121
Query: 129 EYLKANHKKVGS---REEIIQVATIS-----ANGDREIGEKIAY----AMEQIGPHG--- 173
+Y+K + +E +I VA S D + + A++ G
Sbjct: 122 KYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTK 181
Query: 174 --IITIDQAKT---ATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKIS 228
I ++ K + E +V G ++ S + M V+N I D +
Sbjct: 182 YPIKAVNILKAHGKSAKESYLVNGYALNCTRAS-------QGMPTRVKNAKIACLDFNLQ 234
Query: 229 ALQPLLPI---------LESATQSGRPLCIIAEDVEG--DALATLVVNRVRCGLPVLAVK 277
+ L + LE Q R I E ++ A A +V+ G+ + +K
Sbjct: 235 KTKMKLGVQVVVTDPEKLEKIRQ--RESDITKERIKKILAAGANVVL--TTGGIDDMCLK 290
Query: 278 ----APAFGDRR--KEVLRDIAAVVGATVISEEIGLKLEKA-TIADLGSAKKVVMSK--D 328
A A RR KE LR IA GAT++S L+ E+ + LG A++VV + D
Sbjct: 291 YFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGD 350
Query: 329 DTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAA 388
D I+ G +R I I +D+ D+++ L
Sbjct: 351 DELIL-IKGTKKRSSASI------ILRGANDFMLDEMERSL------------------- 384
Query: 389 LGEKKDRYQDSLDA-TRAASDEGIVPGGGIALVRAAQALSVKGDN-------EDQCAGIE 440
D+L R +VPGGG ALS+ +N +Q A E
Sbjct: 385 --------HDALCVVKRTLESNSVVPGGGAVET----ALSIYLENFATTLGSREQLAIAE 432
Query: 441 IVRKALSYPCRQIIKNAGDESELIVSKI-----------QESKTANYGYNAQKSVFGDMF 489
L P + + NA ++ +V+K+ + YG + D
Sbjct: 433 FAEALLVIP-KTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNL 491
Query: 490 EMGIIDP----VKVVRNALQSA 507
E G+++P +K ++ A ++A
Sbjct: 492 EAGVLEPTVSKIKSLKFATEAA 513
>gnl|CDD|48156 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin..
Length = 526
Score = 56.4 bits (136), Expect = 2e-08
Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 8/134 (5%)
Query: 22 TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNT 81
++A ++ +LGP+G I+ + G VT DG T+ + + + A+++ +++ +
Sbjct: 34 SVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQ 89
Query: 82 EDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVG-- 139
+D GDGTT LA A+ + K + G++P+ I G + A + VE+L+ K+
Sbjct: 90 DDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFS 149
Query: 140 --SREEIIQVATIS 151
++E +IQ A S
Sbjct: 150 PDNKEPLIQTAMTS 163
Score = 30.6 bits (69), Expect = 1.3
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 13/142 (9%)
Query: 391 EKKDRYQDSLDATRA-ASDEGIVPGGGIALVRAAQALSVKGDNEDQCAGIE--IVR---K 444
E K D+L R D IV GGG A + + A+ D+C+GIE +R
Sbjct: 388 EAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVE---KAADKCSGIEQYAMRAFAD 444
Query: 445 ALSYPCRQIIKNAGDESELIVSKIQ----ESKTANYGYNAQKSVFGDMFEMGIIDPVKVV 500
AL + +N+G +S+++ + K + G + DM E + + +
Sbjct: 445 ALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISK 504
Query: 501 RNALQSAGSLAGMMLITEAVVV 522
+ + A + M+L + V+V
Sbjct: 505 KQQILLATQVVKMILKIDDVIV 526
>gnl|CDD|35583 KOG0362, KOG0362, KOG0362, Chaperonin complex component, TCP-1
theta subunit (CCT8) [Posttranslational modification,
protein turnover, chaperones].
Length = 537
Score = 54.5 bits (131), Expect = 6e-08
Identities = 110/543 (20%), Positives = 204/543 (37%), Gaps = 92/543 (16%)
Query: 20 VNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVAT 79
V LA ++ GP GR ++ N G VT D T+ + + H A+++ +
Sbjct: 35 VRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEV-EH---PAAKLLVEATQ 90
Query: 80 NTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKA----NH 135
E+ GDGT LA A+ + + + GL P +I G + A +E +E L +
Sbjct: 91 MQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSI 150
Query: 136 KKVGSREEIIQVATISANGDRE--IGEKIAYAMEQIGPHGIITIDQAKTAT------TEV 187
+ +E ++ +S E + + +A A I P +D + +
Sbjct: 151 GDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDS 210
Query: 188 RVVQGMQIDRG---------------YISPYFVTSTE-RMTAEVENPYILI-YDKKISAL 230
VV GM R + P+ + TE + T ++N L+ + K AL
Sbjct: 211 CVVCGMVFKRDPEGEVKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEAL 270
Query: 231 QPLLPILESATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLR 290
L +++ +G + + V+ L L N+ + ++ ++ + K LR
Sbjct: 271 --LEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NKYK----IMVLQINS-----KFDLR 317
Query: 291 DIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQ 350
+ VGAT + +L +LG V Q
Sbjct: 318 RLCRTVGATALP-----RLFPPAPEELGYCDSV------------------------STQ 348
Query: 351 KAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRA-ASDE 409
+ + + + R+A + A + D E A+ D ++ +A SD
Sbjct: 349 EIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAV-------DDGVNTYKALCSDS 401
Query: 410 GIVPGGGIALVRAAQALSVKGD---NEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVS 466
++PG G + A+ +S +G Q A I+ +AL + + +NAG +++
Sbjct: 402 RLLPGAGATEIELAKQISSRGATLPGLKQLA-IKKFAEALEVLPKTLAENAGLAVTEVIA 460
Query: 467 KI----QESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVV 522
K+ Q K A+ D+ E GI D + V A++ A A +L + +++
Sbjct: 461 KLYAVHQGGKNLGMDIEAEGGTI-DVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIM 519
Query: 523 DAP 525
Sbjct: 520 AKK 522
>gnl|CDD|35581 KOG0360, KOG0360, KOG0360, Chaperonin complex component, TCP-1
alpha subunit (CCT1) [Posttranslational modification,
protein turnover, chaperones].
Length = 545
Score = 46.5 bits (110), Expect = 2e-05
Identities = 115/549 (20%), Positives = 195/549 (35%), Gaps = 96/549 (17%)
Query: 9 GTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHE 68
G R +A VK +LGP G ++ + G +T DG T+ +S H
Sbjct: 17 GERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATI---LSLLEVEHP 73
Query: 69 VGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVV 128
++ ++A ++ GDGTT+ +A + + V ++P I G LA E V
Sbjct: 74 AAKVLV-ELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAV 132
Query: 129 EYLKANHKKVG---SREEIIQVA-------TISANGDREIGEKIAYAMEQIGPHGIITID 178
+Y+ K + +I +A I + D E + A+ + I+ I+
Sbjct: 133 KYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFF-TEMVVDALLAV---KILDIN 188
Query: 179 -QAKTATTEVRVVQ---GMQIDRGYISPYFVTSTE---RMTAEVENPYILIYDKKISALQ 231
+ V +++ QI+ + Y + + M ++N I D + +
Sbjct: 189 GEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTK 248
Query: 232 PLLPILESATQSGRPLCIIAEDVE-----------GDALATLVVNRVRCGLPVLAVKAPA 280
L + + I + + A L + V+A A
Sbjct: 249 MKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGA 308
Query: 281 FGDRR--KEVLRDIAAVVGATVISEEIGLKLEKA-TIADLGSAKKVVMSK--DDTTIVGG 335
RR KE L+ IA GAT++S L+ E+ A LGSA +VV + DD I+
Sbjct: 309 MAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELIL-- 366
Query: 336 NGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDR 395
I+G I +D+ L E +
Sbjct: 367 ------IKGTKATSASIILRGANDF---------------------------MLDEMERS 393
Query: 396 YQDSLDATRAASDEG-IVPGGG-----IALVRAAQALSVKGDNEDQCAGIEIVRKALSYP 449
D+L + + +VPGGG +++ A SV G E A E LS P
Sbjct: 394 LHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSV-GSREQL-AIAEFAAALLSIP 451
Query: 450 CRQIIKNAGDESELIVSKIQESKTA-----------NYGYNAQKSVFGDMFEMGIIDPVK 498
+ + NA +S +V+K++ + YG + D G +P
Sbjct: 452 -KTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPI 510
Query: 499 VVRNALQSA 507
V +L+ A
Sbjct: 511 VKVKSLKFA 519
>gnl|CDD|73351 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin..
Length = 480
Score = 43.7 bits (103), Expect = 1e-04
Identities = 49/238 (20%), Positives = 100/238 (42%), Gaps = 35/238 (14%)
Query: 9 GTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHE 68
G A+ T+A+ ++ LGP+ ++ + G +T DG + + I H
Sbjct: 14 GRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVA---HP 70
Query: 69 VGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVV 128
MI +++ ++ GDGTT+ LA I ++ G++P I + A+++ +
Sbjct: 71 AAKSMI-ELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDAL 129
Query: 129 EYLK--ANHKKVGSREEIIQV-----ATISANGDREIGEKIAY------AMEQIGPHGII 175
+ L+ + V R +++++ T + ++ +A A+E+ G
Sbjct: 130 KILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENG--RKK 187
Query: 176 TIDQAKTATTE---------VRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYD 224
ID + A E RV+ G+ +++ P +M +ENP I++ D
Sbjct: 188 EIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHP-------KMRRRIENPRIVLLD 238
Score = 36.3 bits (84), Expect = 0.021
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 389 LGEKKDRYQDSLDATR-AASDEGIVPGGGIALVRAAQALSVKGDNED--QCAGIEIVRKA 445
L E + QD++ R + +VPGGG + + ALS K + + + + V A
Sbjct: 339 LNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASA 398
Query: 446 LSYPCRQIIKNAGDESELIVSKIQESKTAN----YGYNAQKSVFGDMFEMGIIDPVKVVR 501
L R + +N G +++++ +G + + DM E+GI DP+ V
Sbjct: 399 LEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKA 458
Query: 502 NALQSAGSLAGMMLITEAVV 521
++A A M+L + +V
Sbjct: 459 QTYKTAIEAACMLLRIDDIV 478
>gnl|CDD|35578 KOG0357, KOG0357, KOG0357, Chaperonin complex component, TCP-1
epsilon subunit (CCT5) [Posttranslational modification,
protein turnover, chaperones].
Length = 400
Score = 40.4 bits (94), Expect = 0.001
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60
KD G A + +A ++ +LGPKG ++ + G VT DGV
Sbjct: 18 QERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDGV------ 71
Query: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120
A++I ++ + +D GDGTT LA A+ + + + G++P+ I +G
Sbjct: 72 -------HQIAKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGY 124
Query: 121 DLAVQEVVEYLKANHKKVGSREEIIQVATISAN 153
+ A VE+L E I Q+ AN
Sbjct: 125 EKAKVVAVEHLDEISDPFEFEEMIQQIKETGAN 157
Score = 31.9 bits (72), Expect = 0.49
Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 9/146 (6%)
Query: 391 EKKDRYQDSLDATRA-ASDEGIVPGGGIALVRAAQALS---VKGDNEDQCAGIEIVRKAL 446
E K D+L R D +V GGG A + A A+S K +Q A AL
Sbjct: 256 EAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYA-FRAFADAL 314
Query: 447 SYPCRQIIKNAGDESELIVSKI----QESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRN 502
+ +N+G + +S + + G + DM E +I+ + +
Sbjct: 315 ESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQ 374
Query: 503 ALQSAGSLAGMMLITEAVVVDAPKDE 528
+ A + M+L + V +E
Sbjct: 375 QISLATQMVRMILKIDDVRKPGESEE 400
>gnl|CDD|35585 KOG0364, KOG0364, KOG0364, Chaperonin complex component, TCP-1
gamma subunit (CCT3) [Posttranslational modification,
protein turnover, chaperones].
Length = 527
Score = 37.7 bits (87), Expect = 0.009
Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 28/220 (12%)
Query: 22 TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNT 81
+A+ ++ LGP+ ++ + G +T DG + + I H MI +++
Sbjct: 30 AIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVA---HPAAKSMI-ELSRTQ 85
Query: 82 EDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVGSR 141
++ GDGTT+ LA + N ++ G++P I + A+++ + L V +
Sbjct: 86 DEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVK 145
Query: 142 EEI-------IQVATISANGDREIGEKIAY-AMEQIGPHGIITIDQAKTATTE------- 186
++ V T + ++ +A A++ +G ID + A E
Sbjct: 146 DQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLL 205
Query: 187 --VRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYD 224
V++G+ I++ P +M +ENP I++ D
Sbjct: 206 EDSCVLKGVMINKDVTHP-------KMRRAIENPRIVLLD 238
>gnl|CDD|144567 pfam01026, TatD_DNase, TatD related DNase. This family of proteins
are related to a large superfamily of metalloenzymes.
TatD, a member of this family has been shown
experimentally to be a DNase enzyme.
Length = 255
Score = 33.4 bits (77), Expect = 0.19
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 66 FHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQ 125
E G + V T+ +D L A G+ Y G++P + + ++
Sbjct: 23 AREAGVTAVVVVGTDLKDF-------ERALELARKYPGKVYAAVGVHPHEADEASEEVLE 75
Query: 126 EVVEYLKANHKKV 138
+ + A H KV
Sbjct: 76 ALEKLKLAEHPKV 88
>gnl|CDD|146057 pfam03234, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain
pfam08565. Expression of a construct consisting of only
the N-terminal domain of Saccharomyces pombe Cdc37
results in cellular viability. This indicates that
interactions with the cochaperone Hsp90 may not be
essential for Cdc37 function.
Length = 172
Score = 30.5 bits (69), Expect = 1.3
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 303 EEIGLKLEKATIADLGSAKKVVMS----KDDTTIVGGNGP--SERIEGRINEIQKAIEDT 356
E + L + LGS++ V+ S D V P +E +E ++++ +++
Sbjct: 63 ERVDKLLSELKEESLGSSQAVMKSLNENFTDKENVEPEQPTYNEMVEDLFDQVKDEVDEK 122
Query: 357 KSDYDRDKLKERLAKLA 373
++L++ KL
Sbjct: 123 NGAALIEELQKHRDKLK 139
>gnl|CDD|173932 cd08173, Gro1PDH, Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH)
catalyzes the reversible conversion between
dihydroxyacetone phosphate and glycerol-1-phosphate
using either NADH or NADPH as a coenzyme.
Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC
1.1.1.261) plays an important role in the formation of
the enantiomeric configuration of the glycerophosphate
backbone (sn-glycerol-1-phosphate) of archaeal ether
lipids. It catalyzes the reversible conversion between
dihydroxyacetone phosphate and glycerol-1-phosphate
using either NADH or NADPH as a coenzyme. The activity
is zinc-dependent. One characteristic feature of archaea
is that their cellular membrane has an ether linkage
between the glycerol backbone and the hydrocarbon
residues. The polar lipids of the members of Archaea
consist of di- and tetraethers of glycerol with
isoprenoid alcohols bound at the sn-2 and sn-3 positions
of the glycerol moiety. The archaeal polar lipids have
the enantiomeric configuration of a glycerophosphate
backbone [sn- glycerol-1-phosphate (G-1-P)] that is the
mirror image structure of the bacterial or eukaryal
counterpart [sn-glycerol- 3-phosphate (G-3-P)]. The
absolute stereochemistry of the glycerol moiety in all
archaeal polar lipids is opposite to that of glycerol
ester lipids in bacteria and eukarya. This protein
family is only found in Archaea.
Length = 339
Score = 29.2 bits (66), Expect = 3.3
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 287 EVLRDIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSER 341
+RD VGA ++E+G+ E I L A K+ + TI+G G +
Sbjct: 278 RRIRDALKKVGAPTTAKELGIDDEIV-IEALTIAHKI--RPERYTILGEVGLTRE 329
>gnl|CDD|37230 KOG2019, KOG2019, KOG2019, Metalloendoprotease HMP1 (insulinase
superfamily) [General function prediction only,
Posttranslational modification, protein turnover,
chaperones].
Length = 998
Score = 28.8 bits (64), Expect = 4.0
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 391 EKKDRYQDSLDATRAASDEGIVPGG-GIALVRAAQALSVKGDNEDQCAGIEIVR 443
+D+++ + + + GI G G A R+A L+ G +Q G+ +
Sbjct: 680 TNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLE 733
>gnl|CDD|37219 KOG2008, KOG2008, KOG2008, BTK-associated SH3-domain binding
protein SAB [Signal transduction mechanisms].
Length = 426
Score = 28.6 bits (63), Expect = 5.1
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 13/97 (13%)
Query: 340 ERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDS 399
R+ + ++AI+ ++ ++ K + + D EA + K Y+ S
Sbjct: 162 GRMRQLEKKNKRAIKKSRPYFEL---KAKYTVQLE--QQKKTVDDLEAEVTLAKGEYKMS 216
Query: 400 LDATRAASDEGIVPGGGIALVRAAQ-ALSVKGDNEDQ 435
L SDE I R++Q A++ D E
Sbjct: 217 LRNLEMISDE-------IHEERSSQSAMAPSSDGEGA 246
>gnl|CDD|109560 pfam00509, Hemagglutinin, Hemagglutinin. Hemagglutinin from
influenza virus causes membrane fusion of the viral
membrane with the host membrane. Fusion occurs after the
host cell internalises the virus by endocytosis. The
drop of pH causes release of a hydrophobic fusion
peptide and a large conformational change leading to
membrane fusion.
Length = 550
Score = 28.1 bits (63), Expect = 7.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 342 IEGRINEIQKAIEDTKSD 359
+E RIN + K ++D +D
Sbjct: 401 LERRINNLNKKVDDGITD 418
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.315 0.133 0.365
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,042,858
Number of extensions: 320280
Number of successful extensions: 877
Number of sequences better than 10.0: 1
Number of HSP's gapped: 811
Number of HSP's successfully gapped: 71
Length of query: 551
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 452
Effective length of database: 4,124,446
Effective search space: 1864249592
Effective search space used: 1864249592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.1 bits)