RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus Liberibacter asiaticus str. psy62] (551 letters) >gnl|CDD|178794 PRK00013, groEL, chaperonin GroEL; Reviewed. Length = 542 Score = 818 bits (2116), Expect = 0.0 Identities = 335/547 (61%), Positives = 413/547 (75%), Gaps = 6/547 (1%) Query: 2 AAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSIS 61 AKDIK G AR + GVN LA+AVK TLGPKGR V++ SFGAP +TKDGVTVAK I Sbjct: 1 MAKDIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIE 60 Query: 62 FKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGID 121 ++ F +GA+++++VA+ T D +GDGTTTAT LAQAI EG K V AG NPMD+KRGID Sbjct: 61 LEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGID 120 Query: 122 LAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAK 181 AV+ VE LK K V +EEI QVATISANGD EIG+ IA AME++G G+IT++++K Sbjct: 121 KAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESK 180 Query: 182 TATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESAT 241 TE+ VV+GMQ DRGY+SPYFVT E+M AE+ENPYILI DKKIS +Q LLP+LE Sbjct: 181 GFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVA 240 Query: 242 QSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI 301 QSG+PL IIAEDVEG+ALATLVVN++R L V+AVKAP FGDRRK +L DIA + G TVI Sbjct: 241 QSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVI 300 Query: 302 SEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYD 361 SEE+GLKLE AT+ DLG AKKVV++KD+TTIV G G E I+ R+ +I+ IE+T SDYD Sbjct: 301 SEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYD 360 Query: 362 RDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALVR 421 R+KL+ERLAKLAGGVAV++VG TE + EKKDR +D+L ATRAA +EGIVPGGG+AL+R Sbjct: 361 REKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLR 420 Query: 422 AAQAL-SVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYNA 480 AA AL ++KG N D+ GI IV +AL P RQI +NAG E ++V K++ K YGYNA Sbjct: 421 AAPALEALKGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGYNA 480 Query: 481 QKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGGM 540 + DM E GIIDP KV R+ALQ+A S+AG++L TEAVV D P+ + A+P M Sbjct: 481 ATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKKAAAPPM-----G 535 Query: 541 GGGMGGM 547 GGGMGGM Sbjct: 536 GGGMGGM 542 >gnl|CDD|183791 PRK12849, groEL, chaperonin GroEL; Reviewed. Length = 542 Score = 750 bits (1938), Expect = 0.0 Identities = 327/550 (59%), Positives = 415/550 (75%), Gaps = 9/550 (1%) Query: 2 AAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSIS 61 AK IK AR A+ GVN LA+AVK TLGPKGR V+I SFGAP +TKDGV++AK I Sbjct: 1 MAKIIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIE 60 Query: 62 FKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGID 121 ++ F +GA+++++VA+ T D +GDGTTTAT LAQA+ EG K V AG NPMD+KRGID Sbjct: 61 LEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGID 120 Query: 122 LAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAK 181 AV+ VVE LKA + V EEI QVATISANGD EIGE IA AME++G G+IT++++K Sbjct: 121 KAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESK 180 Query: 182 TATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESAT 241 T TE+ V +GMQ DRGY+SPYFVT ERM A +E+P IL+ DKKIS+LQ LLP+LE Sbjct: 181 TLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVA 240 Query: 242 QSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI 301 QSG+PL IIAEDVEG+ALATLVVN++R GL V AVKAP FGDRRK +L DIA + G TVI Sbjct: 241 QSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVI 300 Query: 302 SEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYD 361 SE++GLKLE+ T+ DLG AK+V ++KD+TTIV G G E IE R+ +I++ IE+T SDYD Sbjct: 301 SEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYD 360 Query: 362 RDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALVR 421 R+KL+ERLAKLAGGVAV++VG TE L E+KDR +D+L+ATRAA +EGIVPGGG+AL+R Sbjct: 361 REKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLR 420 Query: 422 AAQAL-SVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYNA 480 AA+AL + G N DQ AG+EIVR+AL P RQI +NAG + ++V+K+ E + +G+NA Sbjct: 421 AAKALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNA 479 Query: 481 QKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGGM 540 +GD+ GIIDPVKV R+ALQ+A S+AG++L TEA+V D P++E G Sbjct: 480 ATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDP-------PGG 532 Query: 541 GGGMGGMDMM 550 GGMGGM M Sbjct: 533 MGGMGGMGHM 542 >gnl|CDD|162814 TIGR02348, GroEL, chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118. Length = 524 Score = 703 bits (1817), Expect = 0.0 Identities = 312/525 (59%), Positives = 398/525 (75%), Gaps = 2/525 (0%) Query: 3 AKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISF 62 AK IK AR A+ GV+ LA+AVK TLGPKGR V++ SFGAP +TKDGVTVAK I Sbjct: 1 AKQIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIEL 60 Query: 63 KNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDL 122 ++ F +GA+++++VA+ T D +GDGTTTAT LAQAI EG K V AG NP+++KRGI+ Sbjct: 61 EDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEK 120 Query: 123 AVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAKT 182 AV+ VE LK K V ++EI QVATISAN D EIG IA AME++G G+IT++++K+ Sbjct: 121 AVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKS 180 Query: 183 ATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESATQ 242 TE+ VV+GMQ DRGYISPYFVT E+M E+ENPYILI DKKIS ++ LLP+LE Q Sbjct: 181 LETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQ 240 Query: 243 SGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVIS 302 SG+PL IIAEDVEG+ALATLVVN++R L V AVKAP FGDRRK +L DIA + G VIS Sbjct: 241 SGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVIS 300 Query: 303 EEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDR 362 EE+GLKLE+ T+ DLG AKKV + KD+TTIV G G I+ R+ +I+ IE+T SDYDR Sbjct: 301 EELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDR 360 Query: 363 DKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALVRA 422 +KL+ERLAKLAGGVAV++VG TE + EKK R +D+L+ATRAA +EGIVPGGG+AL+RA Sbjct: 361 EKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRA 420 Query: 423 AQAL-SVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYNAQ 481 A AL +KGDNED+ GI+IV++AL P RQI +NAG + ++ K++ESK N+G+NA Sbjct: 421 AAALEGLKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKESK-GNFGFNAA 479 Query: 482 KSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPK 526 + D+ E GIIDP KV R+ALQ+A S+AG++L TEAVV D P+ Sbjct: 480 TGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKPE 524 >gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional. Length = 555 Score = 698 bits (1804), Expect = 0.0 Identities = 298/542 (54%), Positives = 398/542 (73%), Gaps = 5/542 (0%) Query: 2 AAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSIS 61 K+I+ G AR ++ G+ LA+AV TLGPKGR VII +G+P++TKDGVTVAK+I Sbjct: 13 KGKEIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIE 72 Query: 62 FKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGID 121 F + F VGA++IR VA+ T D +GDGTTTAT LA+AI+ EG K V AGLNPMD+KRGID Sbjct: 73 FSDRFENVGAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGID 132 Query: 122 LAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAK 181 LAV+ V+E LK + V ++E+I+ VATISANGD EIG IA AM+++G G IT++ K Sbjct: 133 LAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGK 192 Query: 182 TATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESAT 241 T E+ VV+GM DRGYISPYFVT+ + E+ENP IL+ DKKIS++Q +LPILE A Sbjct: 193 TLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAV 252 Query: 242 QSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI 301 ++ RPL IIAEDVEG+AL TL++N++R GL V AVKAP FGD RK++L+DIA + GATV+ Sbjct: 253 KNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVV 312 Query: 302 SEE-IGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360 SE+ +GLKL+ + LGSAKKV ++KD+T I+ G G I+ R+ ++ IE T S+Y Sbjct: 313 SEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEY 372 Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420 D++KLKERLAKL+GGVAV++VG +E + EKKDR +D+L+ATRAA +EGIVPGGG+AL+ Sbjct: 373 DKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALL 432 Query: 421 RAAQAL-SVKGDNE---DQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANY 476 RA++ L ++ DNE DQ G++IVR AL P +QI +NAG E ++V KI E K ++ Sbjct: 433 RASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILEKKDPSF 492 Query: 477 GYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPA 536 GY+AQ + +MFE GIIDP KVVR+AL A S+A +ML TEA +VD PK++ + A Sbjct: 493 GYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKEKKKNKNSAA 552 Query: 537 GG 538 Sbjct: 553 PP 554 >gnl|CDD|183792 PRK12850, groEL, chaperonin GroEL; Reviewed. Length = 544 Score = 687 bits (1775), Expect = 0.0 Identities = 328/543 (60%), Positives = 411/543 (75%), Gaps = 3/543 (0%) Query: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60 MAAK+I+ T ARD + GVN LA AVK TLGPKGR V++ SFGAPR+TKDGVTVAK I Sbjct: 1 MAAKEIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEI 60 Query: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120 ++ F +GA+M+++VA+ T D +GDGTTTAT LAQAI EG K V AG+NPMD+KRGI Sbjct: 61 ELEDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGI 120 Query: 121 DLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQA 180 DLAV VV+ LK KKV S +EI QVATISANGD IGE IA AM+++G G+IT+++A Sbjct: 121 DLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEA 180 Query: 181 KTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESA 240 KT TE+ VV+GMQ DRGY+SPYFVT+ E+M AE+E+PYIL+++KKIS LQ LLPILE+ Sbjct: 181 KTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAV 240 Query: 241 TQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATV 300 QSGRPL IIAEDVEG+ALATLVVN++R GL +AVKAP FGDRRK +L DIA + G V Sbjct: 241 VQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQV 300 Query: 301 ISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360 ISE++G+KLE T+ LG AK+V+++K++TTI+ G G + IE R+ +I+ IE+T SDY Sbjct: 301 ISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDY 360 Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420 DR+KL+ERLAKLAGGVAV+ VG TE + EKKDR D+L ATRAA +EGIVPGGG+AL+ Sbjct: 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALL 420 Query: 421 RAAQALS-VKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYN 479 RA AL +KG N D+ AGI+IVR+AL P RQI NAG E ++V K+ E N+G+N Sbjct: 421 RARSALRGLKGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELPG-NFGFN 479 Query: 480 AQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGG 539 AQ +GDM E GIIDP KV R ALQ A S+A +++ TEA+V +APK A G G Sbjct: 480 AQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAAA-AAAGPGPG 538 Query: 540 MGG 542 MGG Sbjct: 539 MGG 541 >gnl|CDD|171771 PRK12852, groEL, chaperonin GroEL; Reviewed. Length = 545 Score = 670 bits (1729), Expect = 0.0 Identities = 320/543 (58%), Positives = 410/543 (75%), Gaps = 2/543 (0%) Query: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60 MAAKD+K ARD + GV+ LA AVK TLGPKGR V+I SFGAPR+TKDGVTVAK I Sbjct: 1 MAAKDVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEI 60 Query: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120 ++ F +GA+M+R+VA+ T D +GDGTTTAT LAQAI EG K V AG+NPMD+KRGI Sbjct: 61 ELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGI 120 Query: 121 DLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQA 180 D+AV VV+ ++ K V S EI QV TISANGD IG+ IA AM+++G G+IT+++ Sbjct: 121 DIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEEN 180 Query: 181 KTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESA 240 K+ TEV +V+GM+ DRGY+SPYFVT+ E+MT E+++ YIL+++KK+S LQ +LP+LE+ Sbjct: 181 KSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAV 240 Query: 241 TQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATV 300 QSG+PL IIAEDVEG+ALATLVVNR+R GL V AVKAP FGDRRK +L DIA + G + Sbjct: 241 VQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQL 300 Query: 301 ISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360 ISE++G+KLE T+ LG AKKVV+ K++TTIV G G IE R+ +I+ IE+T SDY Sbjct: 301 ISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDY 360 Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420 DR+KL+ERLAKLAGGVAV+ VG TE + EKKDR +D+L+ATRAA EGIVPGGG+AL+ Sbjct: 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALL 420 Query: 421 RAAQALS-VKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYN 479 RA +A+ + DN D AGI IV KAL P RQI +NAG E ++V KI E+K+ +G++ Sbjct: 421 RAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFD 480 Query: 480 AQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGG 539 AQ + DM GIIDP KVVR ALQ A S+AG+++ TEA+V + PK + A+P MPAGGG Sbjct: 481 AQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKD-AAPAMPAGGG 539 Query: 540 MGG 542 MGG Sbjct: 540 MGG 542 >gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed. Length = 541 Score = 667 bits (1723), Expect = 0.0 Identities = 327/542 (60%), Positives = 413/542 (76%), Gaps = 3/542 (0%) Query: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60 MAAK++K AR+ + GVN LA+AVK TLGPKGR V+I SFGAP +T DGVT+AK I Sbjct: 1 MAAKEVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEI 60 Query: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120 ++ F +GA+M+R+VA+ T D +GDGTTTAT LAQAI EG K V AG NPMD+KRGI Sbjct: 61 ELEDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGI 120 Query: 121 DLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQA 180 D AV VVE LKAN + V + EI QVATISANGD EIG +A AME++G G+IT++++ Sbjct: 121 DRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEES 180 Query: 181 KTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESA 240 KTA TE+ VV+GMQ DRGY+SPYFVT ++M AE+E+PYILI++KKIS LQ LLP+LE+ Sbjct: 181 KTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAV 240 Query: 241 TQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATV 300 QSG+PL IIAEDVEG+ALATLVVN++R GL V AVKAP FGDRRK +L DIA + G TV Sbjct: 241 VQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTV 300 Query: 301 ISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360 ISE++G+KLE T+ LG AKKVV+ K++TTI+ G G IEGR+ +I+ IE+T SDY Sbjct: 301 ISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDY 360 Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420 DR+KL+ERLAKLAGGVAV+ VG TE + EKKDR D+L ATRAA +EGIVPGGG+AL+ Sbjct: 361 DREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALL 420 Query: 421 RAAQAL-SVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYN 479 RA +AL ++ N DQ G+EIVR+AL P RQI +NAG E ++V K++E K YG+N Sbjct: 421 RAVKALDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLRE-KPGGYGFN 479 Query: 480 AQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGG 539 A + +GD++ G+IDPVKVVR ALQ+A S+AG++L TEA+V + PK E A P P GGG Sbjct: 480 AATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEPAPPAPP-GGG 538 Query: 540 MG 541 M Sbjct: 539 MD 540 >gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional. Length = 546 Score = 590 bits (1523), Expect = e-169 Identities = 315/543 (58%), Positives = 414/543 (76%), Gaps = 1/543 (0%) Query: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60 M+AK++K G ARD + GV+ LA AVK TLGPKGR V++ SFGAPR+TKDGVTVAK I Sbjct: 1 MSAKEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEI 60 Query: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120 ++ F +GA+M+R+VA+ + D++GDGTTTAT LAQAI EG K V AG+NPMD+KRGI Sbjct: 61 ELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGI 120 Query: 121 DLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQA 180 DLAV+ VV L N KKV S +EI QV TISANGD EIG+ +A AM+++G G+IT+++A Sbjct: 121 DLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEA 180 Query: 181 KTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESA 240 K+ TE+ VV+GMQ DRGYISPYFVT+ ++M E+++ YILI +KK+S+L LLP+LE+ Sbjct: 181 KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAV 240 Query: 241 TQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATV 300 Q+G+PL I+AEDVEG+ALATLVVNR+R GL V AVKAP FGDRRK +L+DIA + G Sbjct: 241 VQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQA 300 Query: 301 ISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360 ISE++G+KLE T+ LG AKKV++ K++TTIV G G IE R+ +I+ IE+T SDY Sbjct: 301 ISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDY 360 Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420 DR+KL+ERLAKLAGGVAV+ VG TE + E+KDR D++ ATRAA +EGIVPGGG+AL+ Sbjct: 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALL 420 Query: 421 RAAQALS-VKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYN 479 RA++ L +K N+DQ G+EIVRKALS P RQI NAG++ +IV KI E + +YG++ Sbjct: 421 RASEQLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFD 480 Query: 480 AQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGG 539 +Q +G++ GIIDP KVVR A+Q+A S+A +++ TEA+V + PK A P MP GGG Sbjct: 481 SQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGAGPAMPPGGG 540 Query: 540 MGG 542 MGG Sbjct: 541 MGG 543 >gnl|CDD|178711 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional. Length = 600 Score = 470 bits (1210), Expect = e-133 Identities = 249/547 (45%), Positives = 355/547 (64%), Gaps = 12/547 (2%) Query: 2 AAKDI---KLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAK 58 AAK++ K G+A + A GVN LA+ V TLGPKGR V++ + +G+P++ DGVTVAK Sbjct: 55 AAKELHFNKDGSAIKKLQA-GVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAK 113 Query: 59 SISFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKR 118 + ++ +GA+++R A T D +GDGTTT+ LAQ + EG K V AG NP+ I R Sbjct: 114 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITR 173 Query: 119 GIDLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITID 178 GI+ + +V+ LK K+V E+ VA +SA + E+G IA AM ++G G++T++ Sbjct: 174 GIEKTAKALVKELKKMSKEV-EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLE 232 Query: 179 QAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILE 238 + K+A + VV+GMQ DRGYISPYFVT +E+M+ E +N +L+ DKKI+ + L+ ILE Sbjct: 233 EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILE 292 Query: 239 SATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGA 298 A + G PL IIAED+E +ALATLVVN++R L + A+KAP FG+R+ + L DIA + G Sbjct: 293 DAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGG 352 Query: 299 TVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKS 358 TVI EE+GL L+K LG+A KVV++KD TTIVG E + R+ +I+ IE + Sbjct: 353 TVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQ 412 Query: 359 DYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIA 418 DY+++KL ER+AKL+GGVAV++VG TE L EKK R +D+L+AT+AA +EGIV GGG Sbjct: 413 DYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 472 Query: 419 LVRAAQ---ALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTAN 475 L+R A A+ +N++Q G +IV++ALSYP + I KNAG ++ K+ + Sbjct: 473 LLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPK 532 Query: 476 YGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMP 535 +GYNA + D+ GIIDP KVVR L+ A S+A L ++ VVV+ + E P Sbjct: 533 FGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEPV----P 588 Query: 536 AGGGMGG 542 AG M Sbjct: 589 AGNPMDN 595 >gnl|CDD|162810 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs. Length = 519 Score = 92.5 bits (230), Expect = 2e-19 Identities = 134/551 (24%), Positives = 225/551 (40%), Gaps = 96/551 (17%) Query: 10 TAARDAIAYGV---NTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHF 66 T RDA + +AEAVK TLGP+G ++ +S G +T DG T+ K + ++ Sbjct: 12 TKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHP- 70 Query: 67 HEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQE 126 A+M+ +VA + GDGTTTA LA + + + G++P I G A ++ Sbjct: 71 ---AAKMLVEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEK 127 Query: 127 VVEYLKANHKKVG--SREEIIQVATISANGD-------REIGEKIAYAMEQIGPH----- 172 +E + K+ R+ + +VA S G ++ + A++Q+ Sbjct: 128 ALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGK 187 Query: 173 ------GIITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKK 226 I + + + +V+G+ +D+ + P M V+N I + D Sbjct: 188 YYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHP-------GMPKRVKNAKIALLDAP 240 Query: 227 ISALQPLLPI---LESATQSGRPLCIIAEDVEG--DALATLVVNRVRC--GLPVLA---- 275 + + + + Q + L ++ D +A N V C G+ LA Sbjct: 241 LEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYL 300 Query: 276 VKAPAFGDRR--KEVLRDIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIV 333 KA RR K + +A GA ++S +++ T +DLG A V K Sbjct: 301 AKAGILAVRRVKKSDIEKLARATGAKIVSS-----IKEITESDLGYAGLVEERKV----- 350 Query: 334 GGNGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKK 393 G+ +EG K V +L G TE + E + Sbjct: 351 -GDDKMTFVEG-------------------------CKNPKAVTILLRGG-TEHVVDELE 383 Query: 394 DRYQDSLDATRAASDEG-IVPGGG-----IALVRAAQALSVKGDNEDQCAGIEIVRKALS 447 QD+L +A ++G +V GGG +AL + A + G +Q A IE AL Sbjct: 384 RSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGG--REQLA-IEAFADALE 440 Query: 448 YPCRQIIKNAGDESELIVSKIQ---ESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNAL 504 R + +NAG + + +++ E N G N DM E+G+I+P++V A+ Sbjct: 441 EIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAI 500 Query: 505 QSAGSLAGMML 515 +SA A M+L Sbjct: 501 KSATEAATMIL 511 >gnl|CDD|162813 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 Score = 67.4 bits (165), Expect = 8e-12 Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 27/216 (12%) Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82 L + +K LGPKG ++ + G ++TKDG + + A MI AT + Sbjct: 28 LQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEM----QIQHPTASMIARAATAQD 83 Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVGS-- 140 D +GDGTT+ L + + +Y+ G++P + G ++A E++E+L K Sbjct: 84 DITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEV 143 Query: 141 -REEIIQVA--TISANGDREIGEKIAYAM-----------EQIGPHGIITIDQAKTATTE 186 RE ++ VA ++ ++ +++ + EQI + ++ + T+ Sbjct: 144 DRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATD 203 Query: 187 VRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILI 222 +++G+ +D G P M V+N YIL Sbjct: 204 TTLIRGLVLDHGARHP-------DMPRRVKNAYILT 232 >gnl|CDD|131394 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 519 Score = 64.9 bits (158), Expect = 6e-11 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 11/147 (7%) Query: 9 GTAARDAIAYGVNTLAEAVKCTLGPKG--RCVIIGNSFGAPRVTKDGVTVAKSISFKNHF 66 G AR + G + + VK TLGPKG + + G+S VT DG T+ KSI N Sbjct: 12 GENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDN-- 69 Query: 67 HEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQE 126 A+++ D++ +D GDGTT+ T LA + E K V ++P I G A + Sbjct: 70 --PAAKVLVDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKA 127 Query: 127 VVEYLKAN-----HKKVGSREEIIQVA 148 E LK + K R++++ +A Sbjct: 128 AQEALKKSSIDNGSDKTKFRDDLLNIA 154 Score = 40.6 bits (95), Expect = 0.001 Identities = 35/148 (23%), Positives = 71/148 (47%), Gaps = 6/148 (4%) Query: 385 TEAALGEKKDRYQDSLDA-TRAASDEGIVPGGGIALVRAAQALSVKGDNED--QCAGIEI 441 T+ L E + D+L ++ + V GGG + + ++A++V+ + +E Sbjct: 370 TQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEA 429 Query: 442 VRKALSYPCRQIIKNAGDESELIVSKIQESKT---ANYGYNAQKSVFGDMFEMGIIDPVK 498 +AL I NAG +S +V++++ + G + ++ DM ++GII+ K Sbjct: 430 FARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYK 489 Query: 499 VVRNALQSAGSLAGMMLITEAVVVDAPK 526 V R + SA A ++L + ++ AP+ Sbjct: 490 VKRAVVSSAAEAAEVILRVDNIIKAAPR 517 >gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional. Length = 533 Score = 60.8 bits (148), Expect = 8e-10 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 14/134 (10%) Query: 15 AIAYGVNTLAEAVKCTLGPKGRCVII-----GNSFGAPRVTKDGVTVAKSISFKNHFHEV 69 AIA +A+ VK TLGPKG I+ G G VT DG T+ KS+ N Sbjct: 31 AIA-----VADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNP---- 81 Query: 70 GARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVE 129 A+++ D++ ++ GDGTT+ LA + E K + ++P I G +A+ + Sbjct: 82 AAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARK 141 Query: 130 YLKANHKKVGSREE 143 L+ GS EE Sbjct: 142 ALEEIAFDHGSDEE 155 Score = 39.6 bits (93), Expect = 0.002 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 15/130 (11%) Query: 407 SDEGIVPGGG---IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQ----IIKNAGD 459 D +V GGG + + A + L+ K + + A IE KAL RQ I N G Sbjct: 404 KDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLA-IEAFAKAL----RQIPTIIADNGGY 458 Query: 460 ESELIVSKIQESKTA---NYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLI 516 +S +VSK++ G + +K GDM E+GI + KV + L SA A M+L Sbjct: 459 DSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILR 518 Query: 517 TEAVVVDAPK 526 + ++ AP+ Sbjct: 519 VDDIIRCAPR 528 >gnl|CDD|131395 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 517 Score = 59.4 bits (144), Expect = 3e-09 Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 6/133 (4%) Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82 +A+A++ +LGP+G +I + G +T DG T+ K + A+M+ +++ + Sbjct: 21 VADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGV----IHPAAKMLVELSKAQD 76 Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKV--GS 140 +GDGTT+ LA A+ + G++P I +A E ++ L V Sbjct: 77 IEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSD 136 Query: 141 REEIIQVATISAN 153 RE +I+ AT S + Sbjct: 137 REILIKSATTSLS 149 Score = 29.8 bits (67), Expect = 1.8 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 12/142 (8%) Query: 389 LGEKKDRYQDSLDATRA-ASDEGIVPGGGIALVRAAQALSVKGDNEDQCAGIE--IVRK- 444 + E + D+L R+ G++PGGG + A LS G+E VR Sbjct: 376 IDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLAR---TMKGVESYCVRAF 432 Query: 445 --ALSYPCRQIIKNAGDESELIVSKIQE---SKTANYGYNAQKSVFGDMFEMGIIDPVKV 499 AL + +NAG +V++++ + G + +K DM E ++ P+ V Sbjct: 433 ADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLV 492 Query: 500 VRNALQSAGSLAGMMLITEAVV 521 +A+ A M+L + +V Sbjct: 493 TTSAVTLASETVRMILKIDDIV 514 >gnl|CDD|131398 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 522 Score = 58.6 bits (142), Expect = 4e-09 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 5/112 (4%) Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82 +AE +K TLGP+G +I V+ DG T+ K + + H A+ + D+A + + Sbjct: 30 IAEILKTTLGPRGMDKLIVGK-NGATVSNDGATILKLL---DIVHPA-AKTLVDIAKSQD 84 Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKAN 134 GDGTT+ LA + E + ++ G++P I R A+ +E LK Sbjct: 85 SEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEI 136 Score = 42.4 bits (100), Expect = 3e-04 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 7/125 (5%) Query: 404 RAASDEGIVPGGG---IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDE 460 RA IV GGG + L + + S K D + Q IE KAL R + +NAG + Sbjct: 395 RALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLI-IEAFAKALEIIPRSLCENAGFD 453 Query: 461 SELIVSKIQ---ESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLIT 517 S I++K++ YG + GD FE + +P+ V +NAL++A A +L Sbjct: 454 SIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSI 513 Query: 518 EAVVV 522 + ++ Sbjct: 514 DETIM 518 >gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 532 Score = 52.9 bits (127), Expect = 2e-07 Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 14/149 (9%) Query: 20 VNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVAT 79 ++A ++ +LGPKG ++ + G VT DG T+ + N A+++ +++ Sbjct: 36 AKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPI----AKLMVELSK 91 Query: 80 NTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKV- 138 + +D GDGTT LA A+ + + G++P+ I G ++A + VE+L+ +++ Sbjct: 92 SQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEIS 151 Query: 139 ---GSREEIIQVATISANGDREIGEKIAY 164 ++E +IQ A S +G KI Sbjct: 152 DDNNNKEPLIQAAKTS------LGSKIVS 174 >gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536 Score = 47.8 bits (114), Expect = 7e-06 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 7/146 (4%) Query: 9 GTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHE 68 G R +A VK +LGP G ++ + G +T DG T+ K + ++ Sbjct: 10 GQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP--- 66 Query: 69 VGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVV 128 A+++ ++A + GDGTT+ +A + + + ++P I G LA +E V Sbjct: 67 -AAKILVELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAV 125 Query: 129 EYLKANHKKVGS---REEIIQVATIS 151 +Y+K N RE +I VA S Sbjct: 126 KYIKENLSVSVDELGREALINVAKTS 151 Score = 32.8 bits (75), Expect = 0.22 Identities = 59/262 (22%), Positives = 98/262 (37%), Gaps = 71/262 (27%) Query: 276 VKAPAFGDRR--KEVLRDIAAVVGATVISEEIGLKLEKA-TIADLGSAKKVVMSK--DDT 330 V+A A G RR KE L+ IA G T++S L+ E+ + LG A +VV + DD Sbjct: 297 VEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDE 356 Query: 331 TIVGGNGPSERIEGRI----------NEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLE 380 I+ G R I +E+++++ D R E + + GG AV Sbjct: 357 CIL-IKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKR--TLESNSVVPGGGAV-- 411 Query: 381 VGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALVRAAQALSVKGDNEDQCAGIE 440 E AL + + +L + +Q A E Sbjct: 412 -----ETALSIYLENFATTL------------------------------GSREQLAIAE 436 Query: 441 IVRKALSYPCRQIIKNAGDESELIVSKI-----------QESKTANYGYNAQKSVFGDMF 489 L P + + NA +S +V+K+ ++ YG + D Sbjct: 437 FAEALLIIP-KVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNK 495 Query: 490 EMGIIDP----VKVVRNALQSA 507 E G+++P VK ++ A ++A Sbjct: 496 EAGVLEPAVSKVKSLKFATEAA 517 >gnl|CDD|162812 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531 Score = 45.1 bits (107), Expect = 5e-05 Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 4/109 (3%) Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82 L+ + +LGP G ++ N VT D T+ + + + H A+++ + E Sbjct: 30 LSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQ---HPA-AKLLVMASEMQE 85 Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYL 131 + GDGT LA + ++ + + GL+P +I +G + A+++ +E L Sbjct: 86 NEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVL 134 >gnl|CDD|162811 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525 Score = 34.7 bits (80), Expect = 0.070 Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 51/233 (21%) Query: 22 TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNT 81 +A+ ++ TLGP+ ++ + G +T DG + + I H MI +++ Sbjct: 27 AVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVA---HPAAKSMI-ELSRTQ 82 Query: 82 EDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKA-------- 133 ++ GDGTT+ LA + + ++ ++P I R A+ + + L+ Sbjct: 83 DEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVN 142 Query: 134 -------------NHKKVGSREEII---------QVATISANGDREIGEKIAYAMEQIGP 171 K V +++ V NG +EI K +E+I P Sbjct: 143 DDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKI-P 201 Query: 172 HGIITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYD 224 G I + V++G+ I++ P +M +ENP I++ D Sbjct: 202 GGDI---------EDSCVLKGVMINKDVTHP-------KMRRYIENPRIVLLD 238 Score = 28.6 bits (64), Expect = 4.3 Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 9/147 (6%) Query: 389 LGEKKDRYQDSLDATRAASDEG-IVPGGGIALVRAAQALSVKGD--NEDQCAGIEIVRKA 445 L E + QD++ R E ++PGGG + + L+ K Q V A Sbjct: 380 LNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADA 439 Query: 446 LSYPCRQIIKNAGDE-----SELIVSKIQESKTANYGYNAQKSVFGDMFEMGIIDPVKVV 500 L R + +N G +EL QE +G + + DM E GI +P+ V Sbjct: 440 LEIIPRTLAQNCGVNVIRTLTELRAKHAQEGN-CTWGIDGETGKIVDMKEKGIWEPLAVK 498 Query: 501 RNALQSAGSLAGMMLITEAVVVDAPKD 527 ++A A M+L + +V K Sbjct: 499 LQTYKTAIESACMLLRIDDIVSGVKKK 525 >gnl|CDD|165505 PHA03246, PHA03246, large tegument protein UL36; Provisional. Length = 3095 Score = 33.0 bits (75), Expect = 0.22 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 22/129 (17%) Query: 285 RKEVLRDIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGP----SE 340 + E DI + E +L+ T+ L A+ V+ S D T + +GP +E Sbjct: 1715 KAETANDIVTQAALLLTKVEETKELDTQTVEWLKHAESVIDSHDLTVRIDESGPMTIYAE 1774 Query: 341 RIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVG-DVTEAALGEKKDRYQDS 399 RI+ + L+ RLA+L +A+ EV D T + KDR S Sbjct: 1775 RIDALVR-----------------LENRLAELKSELALAEVAWDDTWSTFIHDKDRIDKS 1817 Query: 400 LDATRAASD 408 + AA + Sbjct: 1818 SEGFSAARE 1826 >gnl|CDD|147974 pfam06102, DUF947, Domain of unknown function (DUF947). Family of eukaryotic proteins with unknown function. Length = 167 Score = 31.5 bits (72), Expect = 0.58 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 11/73 (15%) Query: 342 IEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLD 401 E I E++K ++ TK + ++++LK L + + + KDR ++ L Sbjct: 60 REKEIEELKKKLKKTKDEEEKEELKRALQSM-----------KSRLKTLKNKDREREILA 108 Query: 402 ATRAASDEGIVPG 414 + E I G Sbjct: 109 EHKKQEKELIKEG 121 >gnl|CDD|165506 PHA03247, PHA03247, large tegument protein UL36; Provisional. Length = 3151 Score = 29.5 bits (66), Expect = 2.4 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 3/53 (5%) Query: 398 DSLDATRAASDEGIVPGGGIALVRAAQALSVKGDNEDQCAGIEIVRKALSYPC 450 D LDA RA + GG+ L AA A D A E+VR ++ C Sbjct: 1489 DRLDALRADVHRAL---GGVPLDLAAAAEQTSRLRNDPAAAAELVRTGVTLAC 1538 >gnl|CDD|180966 PRK07409, PRK07409, threonine synthase; Validated. Length = 353 Score = 28.6 bits (65), Expect = 4.5 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 11/47 (23%) Query: 411 IVPGGGIALVRAAQA-------LSVKGDNEDQCAGIEIVRK-ALSYP 449 ++P G IAL + AQA + + G N D +EIVR+ A YP Sbjct: 107 LIPEGKIALGKLAQAVMYGAEIIQIDG-NFDDA--LEIVRELAEKYP 150 >gnl|CDD|178604 PLN03037, PLN03037, lipase class 3 family protein; Provisional. Length = 525 Score = 28.4 bits (63), Expect = 5.6 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 8/35 (22%) Query: 43 SFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDV 77 SFGAPRV +++FK +E+G +++R V Sbjct: 353 SFGAPRV--------GNLAFKEKLNELGVKVLRVV 379 >gnl|CDD|148284 pfam06583, Neogenin_C, Neogenin C-terminus. This family represents the C-terminus of eukaryotic neogenin precursor proteins, which contains several potential phosphorylation sites. Neogenin is a member of the N-CAM family of cell adhesion molecules (and therefore contains multiple copies of pfam00047 and pfam00041) and is closely related to the DCC tumour suppressor gene product - these proteins may play an integral role in regulating differentiation programmes and/or cell migration events within many adult and embryonic tissues. Length = 378 Score = 28.0 bits (62), Expect = 6.3 Identities = 12/27 (44%), Positives = 16/27 (59%) Query: 348 EIQKAIEDTKSDYDRDKLKERLAKLAG 374 E K +ED S Y+ D+L E +A L G Sbjct: 341 ETTKMLEDPDSSYEPDELSEEMAHLEG 367 >gnl|CDD|163109 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Length = 451 Score = 27.9 bits (63), Expect = 6.6 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 12/98 (12%) Query: 284 RRKEVLRDIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIE 343 RRK +VGA E+G +L + + +VV DD + Sbjct: 122 RRKGFNLRRVLIVGAG----ELGRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVL 177 Query: 344 GRINEIQKAIEDTKSD--------YDRDKLKERLAKLA 373 G+++++++ I + + D D++ E L L Sbjct: 178 GKLDDLEELIREGEVDEVYIALPLAAEDRILELLDALE 215 >gnl|CDD|148710 pfam07262, DUF1436, Protein of unknown function (DUF1436). This family consists of several hypothetical bacterial proteins of around 160 residues in length. The function of this family is unknown. Length = 158 Score = 27.7 bits (62), Expect = 7.3 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 14/73 (19%) Query: 431 DNEDQCAGIEIVRKALSYP-------CRQIIKNAGDESEL--IVSKIQESKTANYGYNAQ 481 D +D G I +ALS R V K+ E YGY ++ Sbjct: 39 DVDDSDLGKAI-LQALSKSRTIDEDEFRHFFDLEKLSEFYKNWVKKLMEK----YGYKSK 93 Query: 482 KSVFGDMFEMGII 494 +++F +M GI Sbjct: 94 RALFKNMKFCGIS 106 >gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor. Length = 539 Score = 27.7 bits (61), Expect = 7.7 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 51 KDGVTVAKSISFKNHFHEVGARMIRDVATN---TEDSSGDGTTTATCLAQAIYNEGRKYV 107 +G T A F R++R V N +D SG T + AI GR+ V Sbjct: 195 NNGNTTANQKGFPTWVSRKDRRLLRLVRANLVVAKDGSGHFNT----VQAAIDVAGRRKV 250 Query: 108 TAGLNPMDIKRGI 120 T+G + +KRGI Sbjct: 251 TSGRFVIYVKRGI 263 >gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional. Length = 205 Score = 27.9 bits (62), Expect = 8.1 Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 12/66 (18%) Query: 204 FVTSTERMTAEVENPYILIYDKKISA------------LQPLLPILESATQSGRPLCIIA 251 FV RM A + P L ISA +P + ILE T SG + A Sbjct: 32 FVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCA 91 Query: 252 EDVEGD 257 E +E Sbjct: 92 EAIERR 97 >gnl|CDD|152291 pfam11855, DUF3375, Protein of unknown function (DUF3375). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length. Length = 471 Score = 27.7 bits (62), Expect = 8.2 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 343 EGRINEIQKAIED--TKSDYDRDK----LKERLAKLAGGVAVLEVGDVTEAALGEKKDRY 396 E R+ + + + ++ D + L+ + +L + LE GDV + ++R+ Sbjct: 118 ESRLLTVFELLRQLAEGTEPDPEARLAELEREIDELDAEIDRLEAGDVPLLDDTQVRERF 177 Query: 397 QDSLD-ATRAASD 408 + LD A +D Sbjct: 178 RQILDLARELPAD 190 >gnl|CDD|173129 PRK14666, uvrC, excinuclease ABC subunit C; Provisional. Length = 694 Score = 27.5 bits (61), Expect = 8.7 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 7/75 (9%) Query: 353 IEDTKSDYD--RDKLKERLAKLAGGVAVLE-VGDVTEAALGEKKDRYQDSLDATRAASDE 409 + DT DY R + A L G + +E +G T L E+ SL A AA +E Sbjct: 614 VRDTVHDYAIGRHRRARAGAALTGELQRVEGIGPATARLLWERFG----SLQAMAAAGEE 669 Query: 410 GIVPGGGIALVRAAQ 424 G+ GI RAA Sbjct: 670 GLAAVPGIGPARAAA 684 >gnl|CDD|162694 TIGR02089, TTC, tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively. Length = 352 Score = 27.5 bits (61), Expect = 8.8 Identities = 14/32 (43%), Positives = 20/32 (62%) Query: 154 GDREIGEKIAYAMEQIGPHGIITIDQAKTATT 185 G++E G KI A+E++ GI+T D ATT Sbjct: 310 GEKEAGAKIMDAIERVTAAGILTPDVGGKATT 341 >gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 458 Score = 27.5 bits (62), Expect = 9.9 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 10/57 (17%) Query: 473 TANY-GYNAQKSVFGDMFEMG----IIDPVKVVRNALQSAGSLAGMMLITEAVVVDA 524 T NY G N K++ GD +G ++ PV V NA +AGS IT+ V DA Sbjct: 383 TVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGS-----TITKDVPEDA 434 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.315 0.133 0.365 Gapped Lambda K H 0.267 0.0789 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 8,816,592 Number of extensions: 592682 Number of successful extensions: 1234 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1197 Number of HSP's successfully gapped: 67 Length of query: 551 Length of database: 5,994,473 Length adjustment: 98 Effective length of query: 453 Effective length of database: 3,876,889 Effective search space: 1756230717 Effective search space used: 1756230717 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 60 (26.8 bits)