Query gi|254780850|ref|YP_003065263.1| hypothetical protein CLIBASIA_03725 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 30 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 10:11:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780850.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1twff_ a.143.1.2 (F:) RPB6 {B 7.7 43 0.0031 15.5 0.1 14 16-29 64-77 (84) 2 d1hyoa1 b.34.8.1 (A:1-118) Fum 6.8 66 0.0048 14.6 0.7 15 15-29 13-27 (118) 3 d1qkla_ a.143.1.2 (A:) RPB6 {H 4.9 67 0.0049 14.6 -0.2 15 15-29 106-120 (127) 4 d2qtpa1 d.79.9.1 (A:3-171) Unc 3.0 1.5E+02 0.011 12.9 0.3 16 2-17 84-99 (169) 5 d1bhda_ a.40.1.1 (A:) Utrophin 3.0 2E+02 0.014 12.4 0.9 12 18-29 23-35 (108) 6 d1bkra_ a.40.1.1 (A:) beta-spe 2.6 2.3E+02 0.017 12.1 0.9 13 17-29 19-32 (108) 7 d2b5dx1 a.8.3.3 (X:415-528) Al 2.3 1.2E+02 0.009 13.4 -0.8 13 16-28 39-51 (114) 8 d2bgwa2 c.52.1.20 (A:16-148) X 2.2 1.6E+02 0.011 12.9 -0.5 15 11-25 25-39 (133) 9 d2qlvb1 b.1.18.21 (B:161-247) 2.0 2.9E+02 0.021 11.7 0.7 10 20-29 19-28 (87) 10 d1sg1x3 g.24.1.1 (X:96-137) Lo 1.9 2.5E+02 0.019 11.9 0.3 7 20-26 27-33 (42) No 1 >d1twff_ a.143.1.2 (F:) RPB6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=7.75 E-value=43 Score=15.47 Aligned_cols=14 Identities=50% Similarity=0.994 Sum_probs=11.4 Q ss_pred HCCCCCCCCCCCCC Q ss_conf 21686111233135 Q gi|254780850|r 16 TRNLPMGQFSDWKD 29 (30) Q Consensus 16 trnlpmgqfsdwkd 29 (30) -|.+|.|.+-+|+- T Consensus 64 rR~lP~g~~E~w~l 77 (84) T d1twff_ 64 RRYLPDGSFEDWSV 77 (84) T ss_dssp EEECTTSCEEEEET T ss_pred EEECCCCCEEEEEH T ss_conf 88789997899887 No 2 >d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=6.83 E-value=66 Score=14.61 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=10.5 Q ss_pred HHCCCCCCCCCCCCC Q ss_conf 521686111233135 Q gi|254780850|r 15 ETRNLPMGQFSDWKD 29 (30) Q Consensus 15 etrnlpmgqfsdwkd 29 (30) --.|||.|-||...+ T Consensus 13 piqNLPfGVfs~~~~ 27 (118) T d1hyoa1 13 PIQNLPYGVFSTQSN 27 (118) T ss_dssp CTTTCCEEEEECSSC T ss_pred CCCCCCEEEEECCCC T ss_conf 865687388874899 No 3 >d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]} Probab=4.89 E-value=67 Score=14.58 Aligned_cols=15 Identities=40% Similarity=0.800 Sum_probs=11.6 Q ss_pred HHCCCCCCCCCCCCC Q ss_conf 521686111233135 Q gi|254780850|r 15 ETRNLPMGQFSDWKD 29 (30) Q Consensus 15 etrnlpmgqfsdwkd 29 (30) --|.||-|.|-+||- T Consensus 106 IrR~lp~g~~E~w~l 120 (127) T d1qkla_ 106 IRRYLPDGSYEDWGV 120 (127) T ss_dssp EEEEETTTEEEEESS T ss_pred EEEECCCCCEEEEEH T ss_conf 988789997799876 No 4 >d2qtpa1 d.79.9.1 (A:3-171) Uncharacterized protein SPO0826 {Silicibacter pomeroyi [TaxId: 89184]} Probab=3.01 E-value=1.5e+02 Score=12.93 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=12.6 Q ss_pred CCCHHHHHHHHHHHHC Q ss_conf 7401455303455521 Q gi|254780850|r 2 DTGCEQEVGGALLETR 17 (30) Q Consensus 2 dtgceqevggalletr 17 (30) .+.+|.|-++||+.+| T Consensus 84 G~~GE~EHa~Al~H~~ 99 (169) T d2qtpa1 84 GENGELEHAAAILHPK 99 (169) T ss_dssp CTTSCHHHHHHHTCSC T ss_pred CCCCCHHHCCEEECCC T ss_conf 6775343302442020 No 5 >d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Probab=2.96 E-value=2e+02 Score=12.42 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=8.7 Q ss_pred CCCCCCCC-CCCC Q ss_conf 68611123-3135 Q gi|254780850|r 18 NLPMGQFS-DWKD 29 (30) Q Consensus 18 nlpmgqfs-dwkd 29 (30) +.++-.|| ||+| T Consensus 23 ~v~v~nFs~sw~D 35 (108) T d1bhda_ 23 QVNVLNFTTSWTD 35 (108) T ss_dssp TCCCCSSSGGGTT T ss_pred CCCCCCCCCCCCC T ss_conf 9676357543655 No 6 >d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Probab=2.63 E-value=2.3e+02 Score=12.12 Aligned_cols=13 Identities=31% Similarity=0.928 Sum_probs=8.8 Q ss_pred CCCCCCCCC-CCCC Q ss_conf 168611123-3135 Q gi|254780850|r 17 RNLPMGQFS-DWKD 29 (30) Q Consensus 17 rnlpmgqfs-dwkd 29 (30) +++++-.|| +|+| T Consensus 19 ~~v~V~nFs~sw~D 32 (108) T d1bkra_ 19 PNVNIHNFTTSWRD 32 (108) T ss_dssp TTCCCSSSSGGGTT T ss_pred CCCCCCCCCCCCCC T ss_conf 99675068876648 No 7 >d2b5dx1 a.8.3.3 (X:415-528) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]} Probab=2.34 E-value=1.2e+02 Score=13.37 Aligned_cols=13 Identities=46% Similarity=0.728 Sum_probs=9.7 Q ss_pred HCCCCCCCCCCCC Q ss_conf 2168611123313 Q gi|254780850|r 16 TRNLPMGQFSDWK 28 (30) Q Consensus 16 trnlpmgqfsdwk 28 (30) .|.|-+-|-|||- T Consensus 39 aRELLLaqSSDWa 51 (114) T d2b5dx1 39 LRELFLAQSSDWA 51 (114) T ss_dssp HHHHHHTTBGGGT T ss_pred HHHHHHHHHCCCH T ss_conf 9999999834525 No 8 >d2bgwa2 c.52.1.20 (A:16-148) XPF endonuclease {Aeropyrum pernix [TaxId: 56636]} Probab=2.17 E-value=1.6e+02 Score=12.87 Aligned_cols=15 Identities=33% Similarity=0.758 Sum_probs=11.5 Q ss_pred HHHHHHCCCCCCCCC Q ss_conf 345552168611123 Q gi|254780850|r 11 GALLETRNLPMGQFS 25 (30) Q Consensus 11 galletrnlpmgqfs 25 (30) |.-.+.++||.|.|. T Consensus 25 gi~~~~~~L~~GDy~ 39 (133) T d2bgwa2 25 GVQVIPKQLPMGDYL 39 (133) T ss_dssp TCEEEEECCSSSSEE T ss_pred CCEEEEEECCCCCEE T ss_conf 998999976876799 No 9 >d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Probab=2.02 E-value=2.9e+02 Score=11.66 Aligned_cols=10 Identities=30% Similarity=1.026 Sum_probs=6.1 Q ss_pred CCCCCCCCCC Q ss_conf 6111233135 Q gi|254780850|r 20 PMGQFSDWKD 29 (30) Q Consensus 20 pmgqfsdwkd 29 (30) -+|.|.+|+. T Consensus 19 v~GsFn~W~~ 28 (87) T d2qlvb1 19 VTGSFTKWRK 28 (87) T ss_dssp EEEGGGTTSS T ss_pred EEEEECCCCC T ss_conf 9988647686 No 10 >d1sg1x3 g.24.1.1 (X:96-137) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=1.94 E-value=2.5e+02 Score=11.91 Aligned_cols=7 Identities=57% Similarity=1.151 Sum_probs=0.0 Q ss_pred CCCCCCC Q ss_conf 6111233 Q gi|254780850|r 20 PMGQFSD 26 (30) Q Consensus 20 pmgqfsd 26 (30) |.|-||| T Consensus 27 ~~GtFSd 33 (42) T d1sg1x3 27 PEGTYSD 33 (42) T ss_dssp CTTEECC T ss_pred CCCCCCC T ss_conf 3986448 Done!