Query         gi|254780851|ref|YP_003065264.1| hypothetical protein CLIBASIA_03730 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 64
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Mon May 30 01:51:48 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780851.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG2704 consensus               74.1     0.5 1.3E-05   27.0  -1.2   34   19-52    305-338 (480)
  2 KOG3150 consensus               61.6     2.9 7.3E-05   23.0   0.5   32   24-55     16-48  (182)
  3 COG5217 BIM1 Microtubule-bindi  40.2      11 0.00029   19.8   0.8   33    3-39      7-39  (342)
  4 cd07358 harmonin_N_like_1 Doma  29.1      28 0.00071   17.7   1.3   18   46-63     55-72  (78)
  5 KOG4309 consensus               24.8      23  0.0006   18.1   0.3   16   24-39    109-124 (217)
  6 TIGR01116 ATPase-IIA1_Ca calci  23.9      24  0.0006   18.1   0.1   10   10-19    640-649 (800)
  7 smart00615 EPH_lbd Ephrin rece  20.1      30 0.00076   17.5   0.0   21   32-52     38-58  (177)
  8 KOG0227 consensus               19.2      51  0.0013   16.3   1.1   20   19-38    151-170 (222)
  9 PHA02078 hypothetical protein   17.9      54  0.0014   16.1   1.0   10    1-10     30-39  (57)
 10 KOG1915 consensus               17.8      68  0.0017   15.6   1.4   14    2-15    359-372 (677)

No 1  
>KOG2704 consensus
Probab=74.15  E-value=0.5  Score=27.05  Aligned_cols=34  Identities=41%  Similarity=0.649  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf             5666775532243332000020771468999997
Q gi|254780851|r   19 IANLYLQKIETKDDKFEYCDVWNGQTRNWLREVV   52 (64)
Q Consensus        19 ianlylqkietkddkfeycdvwngqtrnwlrevv   52 (64)
                      +.|.-..++|+.+.--|--|.||-||--|||.+|
T Consensus       305 ~~Nvd~l~vE~A~s~k~~l~~WNi~T~~WLR~~v  338 (480)
T KOG2704         305 VSNVDILKVELATSVKEMLDNWNIQTNKWLRRVV  338 (480)
T ss_pred             HCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHE
T ss_conf             2266603350766699887614723878877546


No 2  
>KOG3150 consensus
Probab=61.56  E-value=2.9  Score=22.99  Aligned_cols=32  Identities=31%  Similarity=0.738  Sum_probs=25.3

Q ss_pred             HHHHHCCCCCEEEEECCCCC-HHHHHHHHHHHC
Q ss_conf             75532243332000020771-468999997204
Q gi|254780851|r   24 LQKIETKDDKFEYCDVWNGQ-TRNWLREVVGKI   55 (64)
Q Consensus        24 lqkietkddkfeycdvwngq-trnwlrevvgki   55 (64)
                      ...|.+|+++|.||-||.-- --.||-...|.+
T Consensus        16 ~~~id~k~~rfPyCIVWTPiPvltWl~PfIGHm   48 (182)
T KOG3150          16 DLEIDPKRSRFPYCIVWTPIPVLTWLFPFIGHM   48 (182)
T ss_pred             CCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCE
T ss_conf             556583337787489814727888887653401


No 3  
>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]
Probab=40.22  E-value=11  Score=19.77  Aligned_cols=33  Identities=33%  Similarity=0.488  Sum_probs=25.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             0278899999876423566677553224333200002
Q gi|254780851|r    3 FWRREIYRWVNLVTGKIANLYLQKIETKDDKFEYCDV   39 (64)
Q Consensus         3 fwrreiyrwvnlvtgkianlylqkietkddkfeycdv   39 (64)
                      --|.|+.-|.|.|+    +|-||+||.-...|-||..
T Consensus         7 esr~ell~w~N~v~----~L~l~rIEdcg~g~am~qI   39 (342)
T COG5217           7 ESREELLFWENVVV----RLDLQRIEDCGEGFAMQQI   39 (342)
T ss_pred             HHHHHHHHHHHHHH----HCCCEEHHHHCCCHHHHHH
T ss_conf             54999999998886----3472336554144358998


No 4  
>cd07358 harmonin_N_like_1 Domains similar to the N-terminal protein-binding module of harmonin. This domain is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. Harmonin (not belonging to this group) is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. This domain is also related to domains found in several other PDZ domain-containing scaffold proteins which organize supramolecular complexes. This subgroup is comprised of uncharacterized PDZ-containing proteins including a protein designated Bos taurus PDZ containing 7 which has an N-terminal PDZ domain and a C-terminal harmonin_N_like domain; however the characterized human PDZ containing 7 containing two PDZ domains does not appear to contain a harmonin_N_like domain.
Probab=29.10  E-value=28  Score=17.68  Aligned_cols=18  Identities=28%  Similarity=0.597  Sum_probs=15.7

Q ss_pred             HHHHHHHHHCCHHHHHHC
Q ss_conf             899999720480045411
Q gi|254780851|r   46 NWLREVVGKIRPSDMSRV   63 (64)
Q Consensus        46 nwlrevvgkirpsdmsrv   63 (64)
                      --|||+-|-|-|+|.+|.
T Consensus        55 lLLreIR~~isP~DL~~F   72 (78)
T cd07358          55 LLLRDIRSVVTPTDLGRF   72 (78)
T ss_pred             HHHHHHHCCCCHHHHHHH
T ss_conf             999999704787468786


No 5  
>KOG4309 consensus
Probab=24.77  E-value=23  Score=18.10  Aligned_cols=16  Identities=44%  Similarity=1.014  Sum_probs=13.7

Q ss_pred             HHHHHCCCCCEEEEEC
Q ss_conf             7553224333200002
Q gi|254780851|r   24 LQKIETKDDKFEYCDV   39 (64)
Q Consensus        24 lqkietkddkfeycdv   39 (64)
                      -.|||+....|+|||-
T Consensus       109 a~KIE~rG~ry~Y~Df  124 (217)
T KOG4309         109 ASKIETRGTRYQYCDF  124 (217)
T ss_pred             CCCEEECCCEEEECCE
T ss_conf             5404661433443115


No 6  
>TIGR01116 ATPase-IIA1_Ca calcium-translocating P-type ATPase, SERCA-type; InterPro: IPR005782    This model describes Ca2+ ATPases (3.6.3.8 from EC) from eukaryotes and includes significant representatives from plants. Plasma membrane Ca2+ ATPases are primarily responsible for extrusion of calcium from cytoplasmic milieu to outside, coupled to the hydrolyis of ATP. Besides Ca2+ ATPases, Na+/Ca2+ exchangers are also involved in the maintenance of Ca2+ homestasis in the cell. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=23.86  E-value=24  Score=18.07  Aligned_cols=10  Identities=60%  Similarity=1.029  Sum_probs=6.2

Q ss_pred             HHHHHHHHHH
Q ss_conf             9998764235
Q gi|254780851|r   10 RWVNLVTGKI   19 (64)
Q Consensus        10 rwvnlvtgki   19 (64)
                      -||||||--.
T Consensus       640 LWVNLVTDGL  649 (800)
T TIGR01116       640 LWVNLVTDGL  649 (800)
T ss_pred             HHHHHHCCCC
T ss_conf             0011111777


No 7  
>smart00615 EPH_lbd Ephrin receptor ligand binding domain.
Probab=20.09  E-value=30  Score=17.54  Aligned_cols=21  Identities=33%  Similarity=0.839  Sum_probs=17.1

Q ss_pred             CCEEEEECCCCCHHHHHHHHH
Q ss_conf             332000020771468999997
Q gi|254780851|r   32 DKFEYCDVWNGQTRNWLREVV   52 (64)
Q Consensus        32 dkfeycdvwngqtrnwlrevv   52 (64)
                      --|.-|+|-++...||||---
T Consensus        38 rtyqvC~v~~~~qnNWLrT~~   58 (177)
T smart00615       38 RTYQVCNVQEGNQNNWLRTNF   58 (177)
T ss_pred             EEEEECCCCCCCCCCCCCCCC
T ss_conf             899878889888875311477


No 8  
>KOG0227 consensus
Probab=19.18  E-value=51  Score=16.27  Aligned_cols=20  Identities=30%  Similarity=0.504  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHCCCCCEEEEE
Q ss_conf             56667755322433320000
Q gi|254780851|r   19 IANLYLQKIETKDDKFEYCD   38 (64)
Q Consensus        19 ianlylqkietkddkfeycd   38 (64)
                      +.+-|.|++|++|.+|.|--
T Consensus       151 fmssyeq~ve~~dk~~qyLv  170 (222)
T KOG0227         151 FMSSYEQKVEPPDKSWQYLV  170 (222)
T ss_pred             HHHHHHHHCCCCCCCCEEEE
T ss_conf             24566762577566503899


No 9  
>PHA02078 hypothetical protein
Probab=17.88  E-value=54  Score=16.14  Aligned_cols=10  Identities=60%  Similarity=1.245  Sum_probs=8.3

Q ss_pred             CCCHHHHHHH
Q ss_conf             9302788999
Q gi|254780851|r    1 MLFWRREIYR   10 (64)
Q Consensus         1 mlfwrreiyr   10 (64)
                      |+-|.||||-
T Consensus        30 MiPWEReiYv   39 (57)
T PHA02078         30 MMPWEREIYA   39 (57)
T ss_pred             CCCHHHHHHH
T ss_conf             2748999999


No 10 
>KOG1915 consensus
Probab=17.81  E-value=68  Score=15.62  Aligned_cols=14  Identities=50%  Similarity=1.298  Sum_probs=11.8

Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             30278899999876
Q gi|254780851|r    2 LFWRREIYRWVNLV   15 (64)
Q Consensus         2 lfwrreiyrwvnlv   15 (64)
                      -+|+|-||-|.|..
T Consensus       359 r~W~RYIYLWinYa  372 (677)
T KOG1915         359 RYWRRYIYLWINYA  372 (677)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             88999999999999


Done!