Query gi|254780851|ref|YP_003065264.1| hypothetical protein CLIBASIA_03730 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 64
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 17:25:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780851.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1u09_A Polyprotein; protein-D 54.4 8.4 0.00025 20.1 2.2 20 3-22 51-70 (73)
2 >2vxg_A LD41624, GE-1, CG6181- 15.1 75 0.0022 15.0 1.5 18 43-60 28-45 (93)
3 >1ioj_A APOC-I; apolipoprotein 15.0 56 0.0017 15.7 0.8 17 41-57 35-51 (57)
4 >1gte_A Dihydropyrimidine dehy 14.7 93 0.0027 14.5 1.8 30 13-49 132-161 (176)
5 >3enb_A PRE-mRNA-processing-sp 14.1 45 0.0013 16.3 0.1 23 34-56 53-82 (156)
6 >3e9o_A PRE-mRNA-splicing fact 14.0 46 0.0014 16.2 0.1 23 34-56 64-93 (167)
7 >2qjx_A Protein BIM1; calponin 11.6 69 0.0021 15.2 0.4 32 4-39 11-42 (127)
8 >3e9l_A PRE-mRNA-processing-sp 11.4 62 0.0018 15.5 0.1 23 34-56 62-91 (165)
9 >3e66_A PRP8; beta-finger, RNA 11.3 61 0.0018 15.5 0.1 23 34-56 80-109 (183)
10 >1w36_B RECB, exodeoxyribonucl 10.4 75 0.0022 15.0 0.3 11 3-13 19-29 (80)
No 1
>>1u09_A Polyprotein; protein-DNA complex, RNA-dependent RNA polymerase, transferase; 1.91A {Foot-and-mouth disease virus c-s8c1} (A:404-476)
Probab=54.36 E-value=8.4 Score=20.14 Aligned_cols=20 Identities=45% Similarity=0.708 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 02788999998764235666
Q gi|254780851|r 3 FWRREIYRWVNLVTGKIANL 22 (64)
Q Consensus 3 fwrreiyrwvnlvtgkianl 22 (64)
-|++--|||+|+.||..|.|
T Consensus 51 s~~~l~~~Wl~~f~g~~~~~ 70 (73)
T 1u09_A 51 SYRSLYLRWVNAVCGDAAAL 70 (73)
T ss_dssp CHHHHHHHHHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCHHH
T ss_conf 78999999999851762332
No 2
>>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster} (A:47-139)
Probab=15.15 E-value=75 Score=15.04 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHCCHHHH
Q ss_conf 146899999720480045
Q gi|254780851|r 43 QTRNWLREVVGKIRPSDM 60 (64)
Q Consensus 43 qtrnwlrevvgkirpsdm 60 (64)
..-+||.|++-.|.|+|-
T Consensus 28 ~Kl~wL~~v~~~id~~Dp 45 (93)
T 2vxg_A 28 LKQRYLNEALLAINMADP 45 (93)
T ss_dssp HHHHHHHHHHHHCCTTSH
T ss_pred HHHHHHHHHHHHCCCCCC
T ss_conf 999999999986699986
No 3
>>1ioj_A APOC-I; apolipoprotein, amphipathic helix, lipid association, LCAT activation; NMR {Homo sapiens} (A:)
Probab=14.97 E-value=56 Score=15.71 Aligned_cols=17 Identities=24% Similarity=0.688 Sum_probs=13.4
Q ss_pred CCCHHHHHHHHHHHCCH
Q ss_conf 77146899999720480
Q gi|254780851|r 41 NGQTRNWLREVVGKIRP 57 (64)
Q Consensus 41 ngqtrnwlrevvgkirp 57 (64)
...||||..|..+|++.
T Consensus 35 ~aKtr~WFsEtf~kvke 51 (57)
T 1ioj_A 35 SAKMREWFSETFQKVKE 51 (57)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 08899999999999998
No 4
>>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} (A:54-177,A:822-873)
Probab=14.72 E-value=93 Score=14.54 Aligned_cols=30 Identities=37% Similarity=0.524 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
Q ss_conf 8764235666775532243332000020771468999
Q gi|254780851|r 13 NLVTGKIANLYLQKIETKDDKFEYCDVWNGQTRNWLR 49 (64)
Q Consensus 13 nlvtgkianlylqkietkddkfeycdvwngqtrnwlr 49 (64)
..+||--|-|||+.++.-. -|+||..--.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 161 (176)
T 1gte_A 132 DYCTGLKALLYLKSIEELQ-------GWDGQSPGTES 161 (176)
T ss_dssp HHHHHHHHHHHHTTCGGGT-------TSBTTBCCCCC
T ss_pred HHHHHHHHHHHHCCCCCHH-------HHCCCCCCCCC
T ss_conf 9999999999974999889-------92064564333
No 5
>>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, disease mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} (A:1-156)
Probab=14.08 E-value=45 Score=16.25 Aligned_cols=23 Identities=43% Similarity=0.755 Sum_probs=14.4
Q ss_pred EEEEECCCCCHHH-----H--HHHHHHHCC
Q ss_conf 2000020771468-----9--999972048
Q gi|254780851|r 34 FEYCDVWNGQTRN-----W--LREVVGKIR 56 (64)
Q Consensus 34 feycdvwngqtrn-----w--lrevvgkir 56 (64)
.--|+||+||.|- | -.||++-||
T Consensus 53 iiHtSvwaGQKRl~qLakwk~AeEv~alir 82 (156)
T 3enb_A 53 IIHTSVWAGQKRLGQLAKWKTAEEVAALIR 82 (156)
T ss_dssp EECGGGCCSCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 986012055567888887866999999997
No 6
>>3e9o_A PRE-mRNA-splicing factor 8; nucleotidyl transfer, mRNA processing, nucleus, phosphoprotein, RNA-binding, spliceosome; HET: MSE; 2.00A {Saccharomyces cerevisiae} (A:1-167)
Probab=14.02 E-value=46 Score=16.18 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=14.6
Q ss_pred EEEEECCCCCHHH-----H--HHHHHHHCC
Q ss_conf 2000020771468-----9--999972048
Q gi|254780851|r 34 FEYCDVWNGQTRN-----W--LREVVGKIR 56 (64)
Q Consensus 34 feycdvwngqtrn-----w--lrevvgkir 56 (64)
.--|+||+||.|- | -.||++-||
T Consensus 64 iiHtSvwaGQKRl~qLakwktAeEv~alir 93 (167)
T 3e9o_A 64 IIHTSVWAGQKRLSQLAKWKTAEEVSALVR 93 (167)
T ss_dssp EECGGGGTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 986002055568888876766999999997
No 7
>>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} (A:)
Probab=11.64 E-value=69 Score=15.22 Aligned_cols=32 Identities=34% Similarity=0.616 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 278899999876423566677553224333200002
Q gi|254780851|r 4 WRREIYRWVNLVTGKIANLYLQKIETKDDKFEYCDV 39 (64)
Q Consensus 4 wrreiyrwvnlvtgkianlylqkietkddkfeycdv 39 (64)
=|.|+-.|+|-.. ++-+.|||.--+--.||..
T Consensus 11 sR~eLL~WiN~~L----~~~~~kiEel~tGaaYCQl 42 (127)
T 2qjx_A 11 SRTELLTWLNGLL----NLNYKKIEECGTGAAYCQI 42 (127)
T ss_dssp CHHHHHHHHHHHH----TCCCCSGGGGGGSHHHHHH
T ss_pred CHHHHHHHHHHHH----CCCHHHHHHHCCCHHHHHH
T ss_conf 7999999999986----6771549870562799999
No 8
>>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, mRNA splicing, nucleus, phosphoprotein, polymorphism; 1.95A {Homo sapiens} (A:1-165)
Probab=11.41 E-value=62 Score=15.50 Aligned_cols=23 Identities=43% Similarity=0.742 Sum_probs=14.0
Q ss_pred EEEEECCCCCHHH-----HH--HHHHHHCC
Q ss_conf 2000020771468-----99--99972048
Q gi|254780851|r 34 FEYCDVWNGQTRN-----WL--REVVGKIR 56 (64)
Q Consensus 34 feycdvwngqtrn-----wl--revvgkir 56 (64)
.--|+||+||.|- |. .||++-||
T Consensus 62 iihtSvwaGQkRl~qlakwk~AeEv~alir 91 (165)
T 3e9l_A 62 IIHTSVWAGQKRLGQLAKWKTAEEVAALIR 91 (165)
T ss_dssp EECGGGGTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 986002055568888887866999999997
No 9
>>3e66_A PRP8; beta-finger, RNAse H fold, mRNA processing, mRNA splicing, nucleus, RNA-binding protein, spliceosome, spliceosomal protein; 2.05A {Saccharomyces cerevisiae} (A:1-183)
Probab=11.29 E-value=61 Score=15.52 Aligned_cols=23 Identities=39% Similarity=0.713 Sum_probs=14.3
Q ss_pred EEEEECCCCCHHH-----HH--HHHHHHCC
Q ss_conf 2000020771468-----99--99972048
Q gi|254780851|r 34 FEYCDVWNGQTRN-----WL--REVVGKIR 56 (64)
Q Consensus 34 feycdvwngqtrn-----wl--revvgkir 56 (64)
.--|+||+||.|- |. .||++-||
T Consensus 80 iiHtSvwaGQkRl~qlaKwktAeEv~alir 109 (183)
T 3e66_A 80 IIHTSVWAGQKRLSQLAKWKTAEEVSALVR 109 (183)
T ss_dssp EECGGGTTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 986002055568888887867999999997
No 10
>>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:149-201,B:322-348)
Probab=10.36 E-value=75 Score=15.03 Aligned_cols=11 Identities=45% Similarity=1.048 Sum_probs=8.0
Q ss_pred CHHHHHHHHHH
Q ss_conf 02788999998
Q gi|254780851|r 3 FWRREIYRWVN 13 (64)
Q Consensus 3 fwrreiyrwvn 13 (64)
|||+.+|.---
T Consensus 19 fWR~~fYpL~~ 29 (80)
T 1w36_B 19 FWRRHCYPLPR 29 (80)
T ss_dssp HHHHHHTTCCH
T ss_pred HHHHHHCCCCH
T ss_conf 99986410659
Done!