Query gi|254780851|ref|YP_003065264.1| hypothetical protein CLIBASIA_03730 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 64
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 20:42:35 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780851.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ioj_A APOC-I; apolipoprotein, 23.7 19 0.00081 17.4 0.8 17 41-57 35-51 (57)
2 1r7c_A Genome polyprotein; mem 12.0 90 0.0038 13.8 3.0 21 3-23 3-23 (31)
3 2vxg_A LD41624, GE-1, CG6181-P 10.0 95 0.004 13.7 1.5 18 43-60 74-91 (139)
4 3e9l_A PRE-mRNA-processing-spl 9.8 54 0.0023 15.0 0.1 22 35-56 63-91 (257)
5 3e9o_A PRE-mRNA-splicing facto 9.5 56 0.0024 14.9 0.1 22 35-56 65-93 (258)
6 3ofo_R 30S ribosomal protein S 9.1 72 0.003 14.3 0.5 13 52-64 17-29 (55)
7 3e66_A PRP8; beta-finger, RNAs 8.6 62 0.0026 14.7 0.1 22 35-56 81-109 (282)
8 2r8u_A Microtubule-associated 8.5 75 0.0032 14.2 0.4 31 4-38 16-46 (268)
9 2qbx_A Ephrin type-B receptor 8.3 24 0.00099 16.9 -2.2 19 32-50 69-87 (208)
10 1wyo_A Protein EB3, microtubul 8.3 64 0.0027 14.6 -0.0 29 5-37 24-52 (159)
No 1
>1ioj_A APOC-I; apolipoprotein, amphipathic helix, lipid association, LCAT activation; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=23.68 E-value=19 Score=17.39 Aligned_cols=17 Identities=24% Similarity=0.688 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHHCCH
Q ss_conf 77146899999720480
Q gi|254780851|r 41 NGQTRNWLREVVGKIRP 57 (64)
Q Consensus 41 ngqtrnwlrevvgkirp 57 (64)
-..||||..|..+|++.
T Consensus 35 ~aKtrnWFSEtf~KvKE 51 (57)
T 1ioj_A 35 SAKMREWFSETFQKVKE 51 (57)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 18889999999999998
No 2
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=12.04 E-value=90 Score=13.80 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 027889999987642356667
Q gi|254780851|r 3 FWRREIYRWVNLVTGKIANLY 23 (64)
Q Consensus 3 fwrreiyrwvnlvtgkianly 23 (64)
-|-|+|..||-.|-....+-.
T Consensus 3 sWLrdiWdWvCtvLsDFk~WL 23 (31)
T 1r7c_A 3 SWLRDIWDWICEVLSDFKTWL 23 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
T ss_conf 379999999999999999999
No 3
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=9.99 E-value=95 Score=13.66 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHCCHHHH
Q ss_conf 146899999720480045
Q gi|254780851|r 43 QTRNWLREVVGKIRPSDM 60 (64)
Q Consensus 43 qtrnwlrevvgkirpsdm 60 (64)
..-.|++|++--+.|+|-
T Consensus 74 ~Kl~WL~e~~~~ld~~Dp 91 (139)
T 2vxg_A 74 LKQRYLNEALLAINMADP 91 (139)
T ss_dssp HHHHHHHHHHHHCCTTSH
T ss_pred HHHHHHHHHHHHCCCCCC
T ss_conf 999999999997599984
No 4
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, mRNA splicing, nucleus, phosphoprotein, polymorphism; 1.95A {Homo sapiens} SCOP: c.55.3.14
Probab=9.79 E-value=54 Score=15.01 Aligned_cols=22 Identities=45% Similarity=0.761 Sum_probs=12.4
Q ss_pred EEEECCCCCHHH-----HH--HHHHHHCC
Q ss_conf 000020771468-----99--99972048
Q gi|254780851|r 35 EYCDVWNGQTRN-----WL--REVVGKIR 56 (64)
Q Consensus 35 eycdvwngqtrn-----wl--revvgkir 56 (64)
--|+||.||.|- |. .||++-||
T Consensus 63 iHtsvwaGQkRl~qLakwktAeEvaalir 91 (257)
T 3e9l_A 63 IHTSVWAGQKRLGQLAKWKTAEEVAALIR 91 (257)
T ss_dssp ECGGGGTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86010155568888887877999999997
No 5
>3e9o_A PRE-mRNA-splicing factor 8; nucleotidyl transfer, mRNA processing, nucleus, phosphoprotein, RNA-binding, spliceosome; HET: MSE; 2.00A {Saccharomyces cerevisiae} SCOP: c.55.3.14 PDB: 3e9p_A
Probab=9.48 E-value=56 Score=14.90 Aligned_cols=22 Identities=41% Similarity=0.730 Sum_probs=13.1
Q ss_pred EEEECCCCCHHH-----HH--HHHHHHCC
Q ss_conf 000020771468-----99--99972048
Q gi|254780851|r 35 EYCDVWNGQTRN-----WL--REVVGKIR 56 (64)
Q Consensus 35 eycdvwngqtrn-----wl--revvgkir 56 (64)
--|+||.||.|- |. .||++-||
T Consensus 65 iHtsvwaGQkRl~qLakwktAeEvaalir 93 (258)
T 3e9o_A 65 IHTSVWAGQKRLSQLAKWKTAEEVSALVR 93 (258)
T ss_dssp ECGGGGTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86110155568888887867999999997
No 6
>3ofo_R 30S ribosomal protein S18; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_R* 3iy8_R 2wwl_R 3ofp_R
Probab=9.05 E-value=72 Score=14.31 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=10.2
Q ss_pred HHHCCHHHHHHCC
Q ss_conf 7204800454119
Q gi|254780851|r 52 VGKIRPSDMSRVC 64 (64)
Q Consensus 52 vgkirpsdmsrvc 64 (64)
-|||.|...+.+|
T Consensus 17 ~GkIlprr~Tg~~ 29 (55)
T 3ofo_R 17 SGKIVPSRITGTR 29 (55)
T ss_dssp TCCBCCHHHHCCC
T ss_pred CCEEECCCCCCCC
T ss_conf 8868287527878
No 7
>3e66_A PRP8; beta-finger, RNAse H fold, mRNA processing, mRNA splicing, nucleus, RNA-binding protein, spliceosome, spliceosomal protein; 2.05A {Saccharomyces cerevisiae} SCOP: c.55.3.14
Probab=8.60 E-value=62 Score=14.66 Aligned_cols=22 Identities=41% Similarity=0.730 Sum_probs=13.0
Q ss_pred EEEECCCCCHHH-----HH--HHHHHHCC
Q ss_conf 000020771468-----99--99972048
Q gi|254780851|r 35 EYCDVWNGQTRN-----WL--REVVGKIR 56 (64)
Q Consensus 35 eycdvwngqtrn-----wl--revvgkir 56 (64)
--|+||.||.|- |. .||++-||
T Consensus 81 iHtsvwaGQkRl~qLaKwktAeEvaalir 109 (282)
T 3e66_A 81 IHTSVWAGQKRLSQLAKWKTAEEVSALVR 109 (282)
T ss_dssp ECGGGTTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86110155568888887877999999997
No 8
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3gjo_A 1yib_A 1yig_A
Probab=8.49 E-value=75 Score=14.21 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 27889999987642356667755322433320000
Q gi|254780851|r 4 WRREIYRWVNLVTGKIANLYLQKIETKDDKFEYCD 38 (64)
Q Consensus 4 wrreiyrwvnlvtgkianlylqkietkddkfeycd 38 (64)
=|.|+..|+|-.. ++-+.|||.--+--.||.
T Consensus 16 sr~ell~Win~~l----~~~~~kie~~~~Gaa~Cq 46 (268)
T 2r8u_A 16 SRHDMLAWINESL----QLNLTKIEQLCSGAAYCQ 46 (268)
T ss_dssp CHHHHHHHHHHHH----TCCCCCGGGGGGSHHHHH
T ss_pred CHHHHHHHHHHHH----CCCCCHHHHCCCCHHHHH
T ss_conf 7999999999986----788530986065199999
No 9
>2qbx_A Ephrin type-B receptor 2; receptor tyrosine kinase, BI-directional signaling, tumorigenesis, angiogenesis, signaling protein, structural genomics; 2.30A {Homo sapiens}
Probab=8.35 E-value=24 Score=16.92 Aligned_cols=19 Identities=32% Similarity=0.957 Sum_probs=15.3
Q ss_pred CCEEEEECCCCCHHHHHHH
Q ss_conf 3320000207714689999
Q gi|254780851|r 32 DKFEYCDVWNGQTRNWLRE 50 (64)
Q Consensus 32 dkfeycdvwngqtrnwlre 50 (64)
-.|+-|+|-.+...||||-
T Consensus 69 rtYqVC~v~~~~qnNWLrT 87 (208)
T 2qbx_A 69 RTYQVCNVFESSQNNWLRT 87 (208)
T ss_dssp EEEEECCTTSSSCCEEEEC
T ss_pred EEEEECCCCCCCCCCEEEC
T ss_conf 8998799998999852444
No 10
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=8.26 E-value=64 Score=14.60 Aligned_cols=29 Identities=34% Similarity=0.627 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 788999998764235666775532243332000
Q gi|254780851|r 5 RREIYRWVNLVTGKIANLYLQKIETKDDKFEYC 37 (64)
Q Consensus 5 rreiyrwvnlvtgkianlylqkietkddkfeyc 37 (64)
|.|+-.|+| ..-++-++|||.--+--.||
T Consensus 24 R~ELL~WiN----~~L~~~~~kiEel~tGaayC 52 (159)
T 1wyo_A 24 RHDMLAWVN----DSLHLNYTKIEQLCSGAAYC 52 (159)
T ss_dssp HHHHHHHHH----HHSCCCCSSGGGGGGCHHHH
T ss_pred HHHHHHHHH----HHHCCCCCHHHHCCCCCHHH
T ss_conf 999999999----98478820198616730999
Done!