Query gi|254780851|ref|YP_003065264.1| hypothetical protein CLIBASIA_03730 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 64 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 10:05:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780851.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2eiaa2 a.73.1.1 (A:17-147) EI 14.1 45 0.0033 14.1 2.2 18 6-23 110-128 (131) 2 d1hx0a1 b.71.1.1 (A:404-496) A 10.3 38 0.0028 14.5 0.7 17 28-44 38-54 (93) 3 d1g94a1 b.71.1.1 (A:355-448) B 9.4 43 0.0032 14.2 0.7 17 28-44 39-55 (94) 4 d3e9oa1 c.55.3.14 (A:1835-2087 9.2 34 0.0025 14.8 0.1 22 35-56 60-88 (253) 5 d3enba1 c.55.3.14 (A:1771-1989 8.6 36 0.0026 14.6 0.1 12 35-46 52-63 (219) 6 d1jaea1 b.71.1.1 (A:379-471) A 7.8 56 0.004 13.6 0.7 17 27-43 37-53 (93) 7 d2qjza1 a.40.1.1 (A:13-132) Mi 6.8 59 0.0043 13.5 0.5 31 4-38 4-34 (120) 8 d2qalr1 a.4.8.1 (R:19-73) Ribo 6.6 57 0.0041 13.6 0.3 13 52-64 17-29 (55) 9 d2uubr1 a.4.8.1 (R:19-88) Ribo 6.0 72 0.0052 13.0 0.6 12 53-64 30-41 (70) 10 d1shwb_ b.18.1.4 (B:) Ligand-b 6.0 22 0.0016 15.8 -2.1 17 33-49 40-56 (181) No 1 >d2eiaa2 a.73.1.1 (A:17-147) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]} Probab=14.07 E-value=45 Score=14.14 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=7.4 Q ss_pred HHHH-HHHHHHHHHHHHHH Q ss_conf 8899-99987642356667 Q gi|254780851|r 6 REIY-RWVNLVTGKIANLY 23 (64) Q Consensus 6 reiy-rwvnlvtgkianly 23 (64) |+|| ||+-+--.|+...| T Consensus 110 g~iyrrWiIlgL~k~vkmy 128 (131) T d2eiaa2 110 RQTYRQWIIEAMSEGIKVM 128 (131) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999988764 No 2 >d1hx0a1 b.71.1.1 (A:404-496) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} Probab=10.33 E-value=38 Score=14.51 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=11.3 Q ss_pred HCCCCCEEEEECCCCCH Q ss_conf 22433320000207714 Q gi|254780851|r 28 ETKDDKFEYCDVWNGQT 44 (64) Q Consensus 28 etkddkfeycdvwngqt 44 (64) .|---.=+||||-.|.. T Consensus 38 ~T~LPaG~YCDVisG~~ 54 (93) T d1hx0a1 38 QTGLPGGTYCDVISGDK 54 (93) T ss_dssp ECCSCSEEEECTTTCCE T ss_pred ECCCCCCCEEEEEECCC T ss_conf 44799953058333541 No 3 >d1g94a1 b.71.1.1 (A:355-448) Bacterial alpha-Amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} Probab=9.41 E-value=43 Score=14.22 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=11.1 Q ss_pred HCCCCCEEEEECCCCCH Q ss_conf 22433320000207714 Q gi|254780851|r 28 ETKDDKFEYCDVWNGQT 44 (64) Q Consensus 28 etkddkfeycdvwngqt 44 (64) .|--..=+||||-.|.. T Consensus 39 ~TgLPaG~YCDVisG~~ 55 (94) T d1g94a1 39 QTDMASGQYCNVLKGEL 55 (94) T ss_dssp ECCSCSEEEECTTTCCB T ss_pred ECCCCCCEEEEEEECCC T ss_conf 75699942468761331 No 4 >d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]} Probab=9.17 E-value=34 Score=14.80 Aligned_cols=22 Identities=41% Similarity=0.730 Sum_probs=12.6 Q ss_pred EEEECCCCCHHH-----HH--HHHHHHCC Q ss_conf 000020771468-----99--99972048 Q gi|254780851|r 35 EYCDVWNGQTRN-----WL--REVVGKIR 56 (64) Q Consensus 35 eycdvwngqtrn-----wl--revvgkir 56 (64) --|+||.||.|- |. .||++-|| T Consensus 60 iHtSvwaGQKRl~qLaKwktAeEv~alir 88 (253) T d3e9oa1 60 IHTSVWAGQKRLSQLAKWKTAEEVSALVR 88 (253) T ss_dssp ECGGGGTTCSCHHHHHHHHHHHHHHHHHH T ss_pred EEEHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 86002055568888887867999999997 No 5 >d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]} Probab=8.56 E-value=36 Score=14.65 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=8.4 Q ss_pred EEEECCCCCHHH Q ss_conf 000020771468 Q gi|254780851|r 35 EYCDVWNGQTRN 46 (64) Q Consensus 35 eycdvwngqtrn 46 (64) --|.||+||.|- T Consensus 52 ihtSvwaGQKRl 63 (219) T d3enba1 52 IHTSVWAGQKRL 63 (219) T ss_dssp ECGGGCCSCSCH T ss_pred EEEHHCCCHHHH T ss_conf 860120555688 No 6 >d1jaea1 b.71.1.1 (A:379-471) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} Probab=7.81 E-value=56 Score=13.64 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=11.3 Q ss_pred HHCCCCCEEEEECCCCC Q ss_conf 32243332000020771 Q gi|254780851|r 27 IETKDDKFEYCDVWNGQ 43 (64) Q Consensus 27 ietkddkfeycdvwngq 43 (64) ..|--..=+||||-.|. T Consensus 37 ~qTgLPaG~YCDVisG~ 53 (93) T d1jaea1 37 LNTGLPAGTYCDVISGE 53 (93) T ss_dssp EECCCCSEEEECTTTCC T ss_pred EECCCCCCCEEEEEECC T ss_conf 85579995304724433 No 7 >d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Probab=6.78 E-value=59 Score=13.49 Aligned_cols=31 Identities=32% Similarity=0.549 Sum_probs=23.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 27889999987642356667755322433320000 Q gi|254780851|r 4 WRREIYRWVNLVTGKIANLYLQKIETKDDKFEYCD 38 (64) Q Consensus 4 wrreiyrwvnlvtgkianlylqkietkddkfeycd 38 (64) -|.|+-.|+|-..+ +-++|||.--+--.||. T Consensus 4 SR~eLL~WiN~~L~----~~~~kiEel~tGa~yCQ 34 (120) T d2qjza1 4 SRHDMLAWINESLQ----LNLTKIEQLCSGAAYCQ 34 (120) T ss_dssp CHHHHHHHHHHHHT----CCCCCGGGGGGSHHHHH T ss_pred CHHHHHHHHHHHHC----CCHHHHHHHCCCHHHHH T ss_conf 79999999999838----98034998356399999 No 8 >d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]} Probab=6.61 E-value=57 Score=13.58 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=9.3 Q ss_pred HHHCCHHHHHHCC Q ss_conf 7204800454119 Q gi|254780851|r 52 VGKIRPSDMSRVC 64 (64) Q Consensus 52 vgkirpsdmsrvc 64 (64) -|||.|+..+.+| T Consensus 17 ~GkI~~rr~Tgl~ 29 (55) T d2qalr1 17 SGKIVPSRITGTR 29 (55) T ss_dssp TSSBCCSTTTCCC T ss_pred CCEEECCCCCCCC T ss_conf 8858387407878 No 9 >d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus thermophilus [TaxId: 274]} Probab=6.04 E-value=72 Score=13.05 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=0.0 Q ss_pred HHCCHHHHHHCC Q ss_conf 204800454119 Q gi|254780851|r 53 GKIRPSDMSRVC 64 (64) Q Consensus 53 gkirpsdmsrvc 64 (64) |+|.|+..+.+| T Consensus 30 GkIlprr~TGl~ 41 (70) T d2uubr1 30 GKILPRRRTGLS 41 (70) T ss_dssp SCBCCHHHHCCC T ss_pred CEEECCCCCCCC T ss_conf 758167448978 No 10 >d1shwb_ b.18.1.4 (B:) Ligand-binding domain of the ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Probab=6.01 E-value=22 Score=15.82 Aligned_cols=17 Identities=35% Similarity=1.077 Sum_probs=0.0 Q ss_pred CEEEEECCCCCHHHHHH Q ss_conf 32000020771468999 Q gi|254780851|r 33 KFEYCDVWNGQTRNWLR 49 (64) Q Consensus 33 kfeycdvwngqtrnwlr 49 (64) .|+-|+|-.+...|||| T Consensus 40 tYqVC~v~~~~qnNWLr 56 (181) T d1shwb_ 40 TYQVCNVFESSQNNWLR 56 (181) T ss_dssp EEEEECTTSSSCCEEEE T ss_pred EEEECCCCCCCCCCEEE T ss_conf 88778889889886066 Done!