RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780851|ref|YP_003065264.1| hypothetical protein
CLIBASIA_03730 [Candidatus Liberibacter asiaticus str. psy62]
         (64 letters)



>1u09_A Polyprotein; protein-DNA complex, RNA-dependent RNA
          polymerase, transferase; 1.91A {Foot-and-mouth disease
          virus c-s8c1} (A:404-476)
          Length = 73

 Score = 25.7 bits (56), Expect = 2.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 4  WRREIYRWVNLVTGKIANL 22
          +R    RWVN V G  A L
Sbjct: 52 YRSLYLRWVNAVCGDAAAL 70


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.326    0.140    0.478 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 570,993
Number of extensions: 19410
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 8
Length of query: 64
Length of database: 4,956,049
Length adjustment: 32
Effective length of query: 32
Effective length of database: 3,874,289
Effective search space: 123977248
Effective search space used: 123977248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.2 bits)