RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780851|ref|YP_003065264.1| hypothetical protein CLIBASIA_03730 [Candidatus Liberibacter asiaticus str. psy62] (64 letters) >1u09_A Polyprotein; protein-DNA complex, RNA-dependent RNA polymerase, transferase; 1.91A {Foot-and-mouth disease virus c-s8c1} (A:404-476) Length = 73 Score = 25.7 bits (56), Expect = 2.5 Identities = 9/19 (47%), Positives = 10/19 (52%) Query: 4 WRREIYRWVNLVTGKIANL 22 +R RWVN V G A L Sbjct: 52 YRSLYLRWVNAVCGDAAAL 70 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.326 0.140 0.478 Gapped Lambda K H 0.267 0.0634 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 570,993 Number of extensions: 19410 Number of successful extensions: 68 Number of sequences better than 10.0: 1 Number of HSP's gapped: 68 Number of HSP's successfully gapped: 8 Length of query: 64 Length of database: 4,956,049 Length adjustment: 32 Effective length of query: 32 Effective length of database: 3,874,289 Effective search space: 123977248 Effective search space used: 123977248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 50 (23.2 bits)