RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780851|ref|YP_003065264.1| hypothetical protein
CLIBASIA_03730 [Candidatus Liberibacter asiaticus str. psy62]
         (64 letters)



>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, signal,
          transferase, phosphorylation, transmembrane, tyrosine-
          protein kinase; HET: NAG; 2.50A {Homo sapiens}
          Length = 536

 Score = 25.8 bits (56), Expect = 2.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 34 FEYCDVWNGQTRNWLR 49
          +  C+V +G   NWLR
Sbjct: 72 YSVCNVMSGDQDNWLR 87


>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics,
          infectious diseases; 1.77A {Vibrio cholerae o1 biovar
          el tor}
          Length = 255

 Score = 23.9 bits (51), Expect = 8.3
 Identities = 13/42 (30%), Positives = 13/42 (30%), Gaps = 4/42 (9%)

Query: 18 KIANLYLQKIETKDDK-FEYCDVWNGQTRNWLREVVGKIRPS 58
             NLY Q     D K     D  N          V KI PS
Sbjct: 14 GTENLYFQSNAMNDPKVIVALDYDN---LADALAFVDKIDPS 52


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.326    0.140    0.478 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 641,191
Number of extensions: 22181
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 12
Length of query: 64
Length of database: 5,693,230
Length adjustment: 35
Effective length of query: 29
Effective length of database: 4,844,690
Effective search space: 140496010
Effective search space used: 140496010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.3 bits)