HHsearch alignment for GI: 254780852 and conserved domain: PRK06602

>PRK06602 NADH dehydrogenase subunit A; Validated.
Probab=100.00  E-value=0  Score=277.54  Aligned_cols=121  Identities=55%  Similarity=1.124  Sum_probs=120.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             96786537999999999999999999999971567898324174443130004347665247999999999987599999
Q gi|254780852|r    1 MSDLLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFL   80 (121)
Q Consensus         1 m~~~~~~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l   80 (121)
T Consensus         1 m~~~~~~y~~i~i~~~~~~~i~~~~l~~~~ll~~~~~~~~K~spyECG~~p~~~~r~~Fsi~fylvailFliFDvEivfl   80 (121)
T PRK06602          1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKLSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLETAFL   80 (121)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             97689989999999999999999999999994789999655887377979988877665669899999999999999999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             79999960243899999999999999999999983575789
Q gi|254780852|r   81 FPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD  121 (121)
Q Consensus        81 ~Pw~~~~~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~  121 (121)
T Consensus        81 ~Pwav~~~~~g~~~~~~~~~Fl~iL~~g~~Yew~kG~L~We  121 (121)
T PRK06602         81 FPWAVSFREIGWLGFIEAMIFIAVLLVGLVYEWRKGALEWE  121 (121)
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99999983230999999999999999999999981767889