HHsearch alignment for GI: 254780852 and conserved domain: PRK08489
>PRK08489 NADH dehydrogenase subunit A; Validated.
Probab=100.00 E-value=9.2e-44 Score=249.89 Aligned_cols=119 Identities=38% Similarity=0.836 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 678653799999999999999999----9999971567898324174443130004347665247999999999987599
Q gi|254780852|r 2 SDLLTSYAPILVFMAIASAIVIVL----MISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEI 77 (121)
Q Consensus 2 ~~~~~~y~~ili~~~~~~~~~~~~----~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEi 77 (121)
T Consensus 4 ~~~~~~Y~~i~l~l~l~~v~~~l~~~l~~~is~~l~p~~~~~eK~spYEcG~~p~~~~~-~f~v~fYlvAilFliFDvE~ 82 (129)
T PRK08489 4 EDLSHPYFGVFVLLVLTFVAFFLTTFLARFISRKLAAKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEI 82 (129)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEHHHHHHHHHHHHHH
T ss_conf 01378629999999999999999999999999871789998334888677989999974-46353289999999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99979999960243899999999999999999999983575789
Q gi|254780852|r 78 AFLFPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 78 v~l~Pw~~~~~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
T Consensus 83 ~fL~Pwav~~~~~g~~~~~~~~~Fi~iL~~G~~Y~w~kGaL~W~ 126 (129)
T PRK08489 83 VFMFPWAVDFKLLGWFGLIEMLLFIVLLGIGFIYAWKKGALEWQ 126 (129)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 99999999961250999999999999999999999414756651