Query gi|254780852|ref|YP_003065265.1| NADH dehydrogenase subunit A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 121
No_of_seqs 117 out of 2581
Neff 6.3
Searched_HMMs 39220
Date Sun May 29 23:42:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780852.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06602 NADH dehydrogenase su 100.0 0 0 277.5 14.5 121 1-121 1-121 (121)
2 CHL00022 ndhC NADH dehydrogena 100.0 0 0 272.9 12.9 118 4-121 3-120 (120)
3 PRK07756 NADH dehydrogenase su 100.0 0 0 267.7 13.7 120 1-120 2-121 (122)
4 PRK07928 NADH dehydrogenase su 100.0 0 0 268.5 12.3 117 5-121 1-119 (119)
5 MTH00055 ND3 NADH dehydrogenas 100.0 0 0 266.8 13.3 118 4-121 1-118 (118)
6 MTH00018 ND3 NADH dehydrogenas 100.0 0 0 264.8 13.1 115 7-121 2-116 (116)
7 MTH00030 ND3 NADH dehydrogenas 100.0 5.6E-45 0 256.0 13.0 118 4-121 1-123 (123)
8 PRK08489 NADH dehydrogenase su 100.0 9.2E-44 0 249.9 11.6 119 2-121 4-126 (129)
9 MTH00202 ND3 NADH dehydrogenas 100.0 6.7E-43 0 245.3 13.0 110 11-120 2-112 (114)
10 COG0838 NuoA NADH:ubiquinone o 100.0 3.1E-42 0 241.9 13.2 121 1-121 1-121 (123)
11 MTH00042 ND3 NADH dehydrogenas 100.0 4.7E-42 0 240.9 13.4 112 10-121 3-115 (116)
12 MTH00203 ND3 NADH dehydrogenas 100.0 1.5E-41 0 238.2 13.6 111 10-120 3-114 (114)
13 MTH00148 ND3 NADH dehydrogenas 100.0 1.6E-41 0 238.1 13.2 112 10-121 2-115 (116)
14 PRK06432 NADH dehydrogenase su 100.0 1.3E-41 0 238.6 11.9 118 4-121 1-143 (144)
15 MTH00161 ND3 NADH dehydrogenas 100.0 2.9E-41 1.4E-45 236.7 13.1 110 11-120 2-113 (113)
16 MTH00069 ND3 NADH dehydrogenas 100.0 3.5E-41 1.4E-45 236.4 12.8 110 11-121 2-113 (114)
17 MTH00012 ND3 NADH dehydrogenas 100.0 6.6E-41 1.4E-45 234.9 13.2 111 11-121 4-116 (117)
18 MTH00136 ND3 NADH dehydrogenas 100.0 9.2E-41 2.8E-45 234.1 12.9 112 10-121 3-115 (116)
19 MTH00106 ND3 NADH dehydrogenas 100.0 7.6E-41 1.4E-45 234.5 12.2 111 10-121 2-114 (115)
20 MTH00113 ND3 NADH dehydrogenas 100.0 1.2E-40 2.8E-45 233.4 12.9 111 10-121 2-114 (115)
21 pfam00507 Oxidored_q4 NADH-ubi 100.0 7.8E-39 2E-43 224.0 11.5 100 21-120 2-102 (102)
22 KOG4662 consensus 100.0 5.9E-34 1.5E-38 198.3 11.3 115 7-121 4-121 (122)
23 MTH00092 ND3 NADH dehydrogenas 99.9 3.6E-27 9.1E-32 162.7 10.8 107 11-121 4-110 (111)
24 PRK06073 NADH dehydrogenase su 99.9 1.8E-21 4.5E-26 132.8 12.0 112 4-115 3-114 (125)
25 MTH00060 ND3 NADH dehydrogenas 99.9 4.4E-21 1.1E-25 130.7 9.8 97 23-121 17-115 (116)
26 TIGR01477 RIFIN variant surfac 68.3 8.1 0.00021 18.9 3.9 38 4-41 347-384 (395)
27 KOG4664 consensus 67.9 4.3 0.00011 20.4 2.4 41 42-82 169-215 (261)
28 pfam03348 Serinc Serine incorp 65.9 9.3 0.00024 18.6 3.8 70 48-117 95-167 (426)
29 TIGR00700 GABAtrnsam 4-aminobu 52.1 4.7 0.00012 20.2 0.3 25 39-63 141-167 (427)
30 PRK08042 formate hydrogenlyase 41.1 29 0.00075 16.0 4.5 26 35-62 510-535 (593)
31 PTZ00046 rifin; Provisional 39.6 31 0.00079 15.9 4.5 16 47-63 241-256 (348)
32 PHA00726 hypothetical protein 33.0 40 0.001 15.3 3.5 45 14-70 8-52 (89)
33 TIGR03148 cyt_nit_nrfD cytochr 29.3 47 0.0012 14.9 7.9 64 10-80 13-76 (314)
34 KOG0134 consensus 27.3 19 0.00049 16.9 0.2 12 41-52 180-191 (400)
No 1
>PRK06602 NADH dehydrogenase subunit A; Validated
Probab=100.00 E-value=0 Score=277.54 Aligned_cols=121 Identities=55% Similarity=1.124 Sum_probs=120.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96786537999999999999999999999971567898324174443130004347665247999999999987599999
Q gi|254780852|r 1 MSDLLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFL 80 (121)
Q Consensus 1 m~~~~~~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l 80 (121)
|++++++|.|++++..++.+++.+++..|++++||+++++|.+|||||+||.+++|.|||+|||++|++|++||+|++++
T Consensus 1 m~~~~~~y~~i~i~~~~~~~i~~~~l~~~~ll~~~~~~~~K~spyECG~~p~~~~r~~Fsi~fylvailFliFDvEivfl 80 (121)
T PRK06602 1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKLSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLETAFL 80 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 97689989999999999999999999999994789999655887377979988877665669899999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 79999960243899999999999999999999983575789
Q gi|254780852|r 81 FPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 81 ~Pw~~~~~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
+||++++++.|+.+++++.+|+.+|.+|++||||||+||||
T Consensus 81 ~Pwav~~~~~g~~~~~~~~~Fl~iL~~g~~Yew~kG~L~We 121 (121)
T PRK06602 81 FPWAVSFREIGWLGFIEAMIFIAVLLVGLVYEWRKGALEWE 121 (121)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999983230999999999999999999999981767889
No 2
>CHL00022 ndhC NADH dehydrogenase subunit 3
Probab=100.00 E-value=0 Score=272.92 Aligned_cols=118 Identities=42% Similarity=0.813 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86537999999999999999999999971567898324174443130004347665247999999999987599999799
Q gi|254780852|r 4 LLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPW 83 (121)
Q Consensus 4 ~~~~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw 83 (121)
|+++|.+++++..++..++.+.+.+|++++||+++++|.+|||||+||.|++|.|||+|||++|++|++||+|+++++||
T Consensus 3 ml~~Y~~i~i~l~ia~~~~~~~l~~s~ll~p~~~~~~K~spYECG~~p~g~ar~~F~v~fylvAilFliFDvE~vfL~Pw 82 (120)
T CHL00022 3 LLYEYDIFWAFLIISSLIPILAFLISGVLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPW 82 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf 08769999999999999999999999993799999644877588869988877541213099999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99960243899999999999999999999983575789
Q gi|254780852|r 84 AVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 84 ~~~~~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
|+++++.|+.+++++.+|+.+|.+|++||||||+|||+
T Consensus 83 av~~~~lg~~~~~~m~iFi~iL~iG~~Y~wkkGaL~W~ 120 (120)
T CHL00022 83 AMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120 (120)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99995630999999999999999999998306735789
No 3
>PRK07756 NADH dehydrogenase subunit A; Validated
Probab=100.00 E-value=0 Score=267.69 Aligned_cols=120 Identities=35% Similarity=0.760 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96786537999999999999999999999971567898324174443130004347665247999999999987599999
Q gi|254780852|r 1 MSDLLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFL 80 (121)
Q Consensus 1 m~~~~~~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l 80 (121)
.+.+..+|.+++++.+++.+++.+++.+|++++|++++++|++|||||++|.+++|.|||+|||++|++|++||+|++++
T Consensus 2 ~~~y~~~y~~i~i~~~~a~~~~~~~l~~s~ll~p~~~~~~K~~~YEcG~~p~g~ar~~F~v~fYlvAilFiiFDvE~vfl 81 (122)
T PRK07756 2 ASVYENSYMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFL 81 (122)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH
T ss_conf 15889999999999999999999999999993799999332787677989899888662300299999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7999996024389999999999999999999998357578
Q gi|254780852|r 81 FPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEW 120 (121)
Q Consensus 81 ~Pw~~~~~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W 120 (121)
+|||+++++.|+.+++++.+|+.+|.+|++||||||+|||
T Consensus 82 ~Pwav~~~~~g~~~~~~m~iFl~iL~iGl~Y~wkkGaL~W 121 (122)
T PRK07756 82 YPWAVAYDKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121 (122)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999997134499999999999999999999998055365
No 4
>PRK07928 NADH dehydrogenase subunit A; Validated
Probab=100.00 E-value=0 Score=268.48 Aligned_cols=117 Identities=38% Similarity=0.821 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65379999999999999999999999715678983241744431300043476--6524799999999998759999979
Q gi|254780852|r 5 LTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARV--KFDIRFCLVSVLFVIFDLEIAFLFP 82 (121)
Q Consensus 5 ~~~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~--~Fsi~fyliallFliFDvEiv~l~P 82 (121)
|++|.|++++..++.+++.+++.+|.+++||+++++|.+|||||+||.+++|. |||+|||++|++|++||+|+++++|
T Consensus 1 M~~y~~ili~~~~~~~~~~~~l~~s~ll~p~~~~~~K~spYEcG~~p~~~~~~~~rF~vrfYlvAilFliFDvE~~fL~P 80 (119)
T PRK07928 1 MNLYIPILVLGALAAAFAVVSVVIASLVGPKRYNRAKLEAYECGIEPTPQPAGGQRFPVKYYLTAMLFIVFDIEIVFLYP 80 (119)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 97389999999999999999999999947899995558867899897777776662225507799999999999999989
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999960243899999999999999999999983575789
Q gi|254780852|r 83 WAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 83 w~~~~~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
||+++++.|+.+++++.+|+.+|.+|++||||||+||||
T Consensus 81 wav~~~~lg~~~~~~m~iFl~iL~~Gl~Y~w~kGaL~We 119 (119)
T PRK07928 81 WAVSFDALGVFGLVEMALFMLTVFVAYAYVWRRGGLEWD 119 (119)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999825465999999999999999999999973656889
No 5
>MTH00055 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=100.00 E-value=0 Score=266.81 Aligned_cols=118 Identities=49% Similarity=1.015 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86537999999999999999999999971567898324174443130004347665247999999999987599999799
Q gi|254780852|r 4 LLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPW 83 (121)
Q Consensus 4 ~~~~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw 83 (121)
|.++|.+++++..++.+++..++.+|.+++||+++++|.+|||||+||.+++|.|||+|||++|++|++||+|+++++||
T Consensus 1 M~~~y~~ili~~~~~~~l~~~~~~~s~ll~~~~~~~eK~spYECG~~p~~~~r~~f~v~fylvailFliFDvEi~fl~Pw 80 (118)
T MTH00055 1 MSAEFLGIFILLLCSIGLSTVISGASYILGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPW 80 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 93669999999999999999999999994789999555888377989988777765400799999999999999999899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99960243899999999999999999999983575789
Q gi|254780852|r 84 AVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 84 ~~~~~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
++++++.|+.+++++.+|+.+|.+|++||||||+||||
T Consensus 81 av~~~~~~~~g~~~~~~F~~iL~~GliYew~kGaL~W~ 118 (118)
T MTH00055 81 CVVYNQIGLLGFWVMYLFLIILTLGLIYEWVKGGLEWE 118 (118)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99973365999999999999999999999973766889
No 6
>MTH00018 ND3 NADH dehydrogenase subunit 3; Validated
Probab=100.00 E-value=0 Score=264.83 Aligned_cols=115 Identities=44% Similarity=0.930 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37999999999999999999999971567898324174443130004347665247999999999987599999799999
Q gi|254780852|r 7 SYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVY 86 (121)
Q Consensus 7 ~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw~~~ 86 (121)
||.|+++++.+++.++..++.+|.+++||+++++|.+|||||+||.+++|.|||+|||++|++|++||+|+++++||+++
T Consensus 2 ey~~i~i~l~~~~~l~~~~~~~s~~l~~~~~~~eK~spyECGf~p~~~ar~~Fsv~FyliailFliFDvEi~~l~Pwav~ 81 (116)
T MTH00018 2 EFYGLFILLIFSVVLSALFSGASYFLGEKQPDREKVSAYECGFDPFGFPGRPFSVRFFLIGILFLIFDLEISFLFPWCVL 81 (116)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77999999999999999999999993789999544788477999987667764410099999999999999999899999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 60243899999999999999999999983575789
Q gi|254780852|r 87 FKQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 87 ~~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
+++.|..+++++.+|+.+|.+|++||||||+||||
T Consensus 82 ~~~~~~~~~~~~~~Fi~iL~vGl~Yew~kGaL~We 116 (116)
T MTH00018 82 YNSIAPFGFWTMVGFLFILTLGLIYEWIKGGLEWE 116 (116)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 73253999999999999999999999983765889
No 7
>MTH00030 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=100.00 E-value=5.6e-45 Score=256.03 Aligned_cols=118 Identities=43% Similarity=0.932 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 865379999999999999999999999-----715678983241744431300043476652479999999999875999
Q gi|254780852|r 4 LLTSYAPILVFMAIASAIVIVLMISPF-----IVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIA 78 (121)
Q Consensus 4 ~~~~y~~ili~~~~~~~~~~~~~~~s~-----~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv 78 (121)
|..+|.+++++..++++++..+..++. +++|+++|+||.+|||||+||.+++|.|||+|||++|++|++||+|++
T Consensus 1 m~~~f~~i~~~ll~~~~i~~l~i~~~~~l~~~ll~p~~p~~eK~spyECG~dp~~~~r~~fsv~FylvAilFliFDvEi~ 80 (123)
T MTH00030 1 MNPEFKTIFFSTLLGVGIILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEIS 80 (123)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHH
T ss_conf 96458999999999999999999999999998317789981107876669899987777653006999999999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9979999960243899999999999999999999983575789
Q gi|254780852|r 79 FLFPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 79 ~l~Pw~~~~~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
+++||++++++.|..++.++..|+.+|.+|++||||||+||||
T Consensus 81 ~l~Pwav~~~~~~~~~~~~~~~Fl~iL~~Gl~Yew~kG~L~W~ 123 (123)
T MTH00030 81 FLFPWSIVFNQLNLFSFWIVYTFLIVLAIGLAYEWIKGGLEWD 123 (123)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9989999973262999999999999999999999974766899
No 8
>PRK08489 NADH dehydrogenase subunit A; Validated
Probab=100.00 E-value=9.2e-44 Score=249.89 Aligned_cols=119 Identities=38% Similarity=0.836 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 678653799999999999999999----9999971567898324174443130004347665247999999999987599
Q gi|254780852|r 2 SDLLTSYAPILVFMAIASAIVIVL----MISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEI 77 (121)
Q Consensus 2 ~~~~~~y~~ili~~~~~~~~~~~~----~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEi 77 (121)
+++-++|.++.+++.++.+..... ..+|..++|++++++|++|||||++|.++++ |||+|||++|++|++||+|+
T Consensus 4 ~~~~~~Y~~i~l~l~l~~v~~~l~~~l~~~is~~l~p~~~~~eK~spYEcG~~p~~~~~-~f~v~fYlvAilFliFDvE~ 82 (129)
T PRK08489 4 EDLSHPYFGVFVLLVLTFVAFFLTTFLARFISRKLAAKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEI 82 (129)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEHHHHHHHHHHHHHH
T ss_conf 01378629999999999999999999999999871789998334888677989999974-46353289999999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99979999960243899999999999999999999983575789
Q gi|254780852|r 78 AFLFPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 78 v~l~Pw~~~~~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
++++|||+++++.|+.++.++.+|+.+|.+|++||||||+|||+
T Consensus 83 ~fL~Pwav~~~~~g~~~~~~~~~Fi~iL~~G~~Y~w~kGaL~W~ 126 (129)
T PRK08489 83 VFMFPWAVDFKLLGWFGLIEMLLFIVLLGIGFIYAWKKGALEWQ 126 (129)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 99999999961250999999999999999999999414756651
No 9
>MTH00202 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=100.00 E-value=6.7e-43 Score=245.35 Aligned_cols=110 Identities=36% Similarity=0.804 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999971567-898324174443130004347665247999999999987599999799999602
Q gi|254780852|r 11 ILVFMAIASAIVIVLMISPFIVAFK-SPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVYFKQ 89 (121)
Q Consensus 11 ili~~~~~~~~~~~~~~~s~~l~~~-~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw~~~~~~ 89 (121)
++.+..++..++.++..++.++++| ++++||.||||||+||.+++|.|||+|||++|++|++||+|+++++||++..++
T Consensus 2 il~~~~i~~~l~~il~~~~~ll~~k~~~~~eK~spyECGfdp~~~aR~~FsirFfLvailFlIFDvEi~ll~P~~~~~~~ 81 (114)
T MTH00202 2 ILFMFLLSGLIPLAFYLVSVLISFKFNWSREKSSPFECGFDPKESSRIPFSFRFFLMAVIFLVFDLELALLIPLPFILGS 81 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999984888998220788466879998777766202999999999999999999899999721
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 4389999999999999999999998357578
Q gi|254780852|r 90 ITWLGFGSMMVFLGILTVGFIYEWKKGALEW 120 (121)
Q Consensus 90 ~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W 120 (121)
.+..+...+.+|+.+|.+|++||||||+|||
T Consensus 82 ~~~~~~~~~~~F~~iL~~Gl~yEW~~GaL~W 112 (114)
T MTH00202 82 FGWFGCLMLGLFFLILFGGVLYEWWEGSLDW 112 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 6599999999999999999999998475213
No 10
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]
Probab=100.00 E-value=3.1e-42 Score=241.85 Aligned_cols=121 Identities=48% Similarity=1.040 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96786537999999999999999999999971567898324174443130004347665247999999999987599999
Q gi|254780852|r 1 MSDLLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFL 80 (121)
Q Consensus 1 m~~~~~~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l 80 (121)
|++++.+|++++++..++.+++..++.++.+++|++++++|++|||||.+|.+++|.+||+|||++|++|++||+|++++
T Consensus 1 ~~~~~~~y~~i~i~l~v~~~~~~~~l~l~~lL~p~~~~~~K~~~YE~G~~p~g~a~~~f~~qyyl~ailFvvFDie~~fl 80 (123)
T COG0838 1 MMELLDEYLPVLIFLVVALLLGVLMLFLSKLLGPRRPNPEKLSPYECGNPPFGGARLRFSVQYYLVAILFVVFDVEVVFL 80 (123)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 92058889999999999999999999999985789998001675635999987523410208999999999998999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 79999960243899999999999999999999983575789
Q gi|254780852|r 81 FPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 81 ~Pw~~~~~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
+||+++++++|+.+++++.+|+.++.+|+.|+||||+|||+
T Consensus 81 ~pwav~~~~lg~~~f~e~~vFi~~l~vg~~Y~~kkgaL~W~ 121 (123)
T COG0838 81 FPWAVSFKELGLFGFLEMLVFIFVLLVGFVYAWKKGALEWQ 121 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999887706999999999999999999999999885556
No 11
>MTH00042 ND3 NADH dehydrogenase subunit 3; Validated
Probab=100.00 E-value=4.7e-42 Score=240.93 Aligned_cols=112 Identities=40% Similarity=0.779 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999971567898324174443130004347665247999999999987599999799999602
Q gi|254780852|r 10 PILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVYFKQ 89 (121)
Q Consensus 10 ~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw~~~~~~ 89 (121)
.++.++.++..++..++..+++++||++++||.+|||||+||.+++|.|||+|||++|++|++||+|+++++||+++.+.
T Consensus 3 ~~~~~l~~~~~i~~~~~~~~~~l~~~~~~~eK~spyECGf~p~~~~r~~fsv~FylvAilFlIFDvEi~~l~P~~~~~~~ 82 (116)
T MTH00042 3 NFIFVLLIILIVTSLLFFAAHFLPSRNPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPYSTLI 82 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999994779998101887266969899877776506999999999999999999999999963
Q ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 43899-999999999999999999983575789
Q gi|254780852|r 90 ITWLG-FGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 90 ~~~~~-~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
.+..+ +..+.+|+.+|.+|++||||||+|||.
T Consensus 83 ~~~~~~~~~~~~Fi~iL~~Gl~YeW~kGaL~Wa 115 (116)
T MTH00042 83 LNPSTVLFISLIFLLILTIGLIYEWVNGGLDWA 115 (116)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 464999999999999999999999985752568
No 12
>MTH00203 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=100.00 E-value=1.5e-41 Score=238.20 Aligned_cols=111 Identities=44% Similarity=0.815 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999971567898324174443130004347665247999999999987599999799999602
Q gi|254780852|r 10 PILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVYFKQ 89 (121)
Q Consensus 10 ~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw~~~~~~ 89 (121)
.++.+..++..++..++..+.+++|+++++||++|||||+||.+++|.|||+|||++|++|++||+|+++++||+++.+.
T Consensus 3 ~il~~~~~~~~~~~~~~~~~~~l~~~~~~~eK~s~yECGf~p~~~ar~~Fsi~FyliailFliFDiEiv~l~P~~~~~~~ 82 (114)
T MTH00203 3 FMMYFVLIASLLSLILALIAFWLPGLNPDNEKLSPYECGFDPMGSARLPFSMRFFLIAILFLLFDLEIALILPLPWSLAL 82 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999993778999211778267979999877777507999999999999999999999999970
Q ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 43-89999999999999999999998357578
Q gi|254780852|r 90 IT-WLGFGSMMVFLGILTVGFIYEWKKGALEW 120 (121)
Q Consensus 90 ~~-~~~~~~~~~F~~iL~~gl~yew~~G~L~W 120 (121)
.+ ..+...+.+|+.+|.+|++||||||+|||
T Consensus 83 ~~~~~~~~~~~iFl~iL~~Gl~YeW~kGaL~W 114 (114)
T MTH00203 83 SSPSLYLLWASLFLILLTLGLIYEWLKGGLEW 114 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 46299999999999999999999998375689
No 13
>MTH00148 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=100.00 E-value=1.6e-41 Score=238.14 Aligned_cols=112 Identities=39% Similarity=0.760 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 999999999999999999999715678-983241744431300043476652479999999999875999997999996-
Q gi|254780852|r 10 PILVFMAIASAIVIVLMISPFIVAFKS-PDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVYF- 87 (121)
Q Consensus 10 ~ili~~~~~~~~~~~~~~~s~~l~~~~-~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw~~~~- 87 (121)
.+++++.++..++.+++..+.++++|+ +++||.+|||||+||.+++|.|||+|||++|++|++||+|+++++||+++.
T Consensus 2 ~i~i~l~~~~~i~~i~~~~~~~l~~k~~~~~eK~spyECGf~p~~~~r~~Fsi~FfliailFLiFDvEiv~l~P~~~~~~ 81 (116)
T MTH00148 2 TILLSLFILLILNVVLLGLGLVLSKRSNSDREKNSPFECGFDPSSSARSPFSMRFFLLAILFLIFDVEIVLLFPLLSNIM 81 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 59999999999999999999997577899866478837798999877887750279999999999999999989999994
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 0243899999999999999999999983575789
Q gi|254780852|r 88 KQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 88 ~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
...+..++..+.+|+.+|.+|++||||||+|||.
T Consensus 82 ~~~~~~~~~~~~~Fl~iL~~Gl~yeW~~G~L~W~ 115 (116)
T MTH00148 82 NSVSHWGLTSSLIFLLILLLGLFHEWNEGSLDWM 115 (116)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 1647999999999999999999999985751338
No 14
>PRK06432 NADH dehydrogenase subunit A; Validated
Probab=100.00 E-value=1.3e-41 Score=238.58 Aligned_cols=118 Identities=25% Similarity=0.475 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------------------------CHHHHCHHHHHCHHCCCCCCC
Q ss_conf 8653799999999999999999999997156789-------------------------832417444313000434766
Q gi|254780852|r 4 LLTSYAPILVFMAIASAIVIVLMISPFIVAFKSP-------------------------DPEKLSTYECGFDPFDDARVK 58 (121)
Q Consensus 4 ~~~~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~-------------------------~~~K~s~yECGf~p~~~~~~~ 58 (121)
|++.|.|++++..++..+......++-.++|+|. ++.|++|||||++|.+++|.|
T Consensus 1 Ml~~YvPilvl~~ia~~~~~~~~~i~~~igp~Ry~~~r~k~~~~~i~~~~~~e~~p~~~~~~~l~pyEcG~~~~e~a~~r 80 (144)
T PRK06432 1 MLDGYIPLLIIIVVIPLALIFGFKILPALGANRYGDNRISLKTEDILKKAAYEDTPPGSDQSYLEPYESGEVAREIWGGP 80 (144)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98531369999999999999999998752632135441121255565404667899997702278733588631246773
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 524799999999998759999979999960243899999999999999999999983575789
Q gi|254780852|r 59 FDIRFCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 59 Fsi~fyliallFliFDvEiv~l~Pw~~~~~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
||+|||++|++|++||+|++|+||||++++++|+.++++|.+|+.+|++|++|+||||+|||.
T Consensus 81 F~VrfYlvAmLFiiFDvE~vFLyPWAv~f~~lG~~g~iem~iFi~iL~vg~~YawkkGaL~W~ 143 (144)
T PRK06432 81 SINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLFAVYYAFKMGYMRWL 143 (144)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 211138999999999999999999899998702999999999999999999999741520016
No 15
>MTH00161 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=100.00 E-value=2.9e-41 Score=236.72 Aligned_cols=110 Identities=43% Similarity=0.834 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999715678-98324174443130004347665247999999999987599999799999602
Q gi|254780852|r 11 ILVFMAIASAIVIVLMISPFIVAFKS-PDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVYFKQ 89 (121)
Q Consensus 11 ili~~~~~~~~~~~~~~~s~~l~~~~-~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw~~~~~~ 89 (121)
+++++.++..++..++.++.++++|+ +++||++|||||+||.+++|.|||+|||++|++|++||+|+++++||++++++
T Consensus 2 ~l~~l~~~~~i~~~l~~l~~ll~~k~~~~~eK~spyECGf~p~~~~r~~Fsi~FylvailFliFDvEiv~l~P~~~~~~~ 81 (113)
T MTH00161 2 LMMIMIIILIISFILMILASILSKKTIMDREKNSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIVLLLPIPIIFKT 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999999983899998110888576979999877777606999999999999889999999999987
Q ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 438999-9999999999999999998357578
Q gi|254780852|r 90 ITWLGF-GSMMVFLGILTVGFIYEWKKGALEW 120 (121)
Q Consensus 90 ~~~~~~-~~~~~F~~iL~~gl~yew~~G~L~W 120 (121)
.+..+. ..+..|+.+|.+|++||||||+|||
T Consensus 82 ~~~~~~~~~~~~Fl~iL~iGliyew~~GaL~W 113 (113)
T MTH00161 82 SNMMSWFLTSIFFLLILLLGLYYEWNQGALEW 113 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 12799999999999999999999998386889
No 16
>MTH00069 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=100.00 E-value=3.5e-41 Score=236.35 Aligned_cols=110 Identities=45% Similarity=0.882 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_conf 99999999999999999999715678983241744431300043476652479999999999875999997--9999960
Q gi|254780852|r 11 ILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLF--PWAVYFK 88 (121)
Q Consensus 11 ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~--Pw~~~~~ 88 (121)
++++..++..++.+++.++.+++||++++||.+|||||+||.+++|.|||+|||++|++|++||+|+++++ ||++..+
T Consensus 2 il~~~~i~~~l~~i~~~ls~~l~~~~~~~eK~spyECGf~p~~~~r~~Fsv~FylvailFlIFDvEi~~l~P~p~a~~~~ 81 (114)
T MTH00069 2 IMLMLLISTILSLILITISFWLPLNNPDTEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 04699999999999999999957899982118771768699888777767299999999999999999997369999970
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 243899999999999999999999983575789
Q gi|254780852|r 89 QITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 89 ~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
.. ..+...+.+|+.+|.+|++||||||+|||.
T Consensus 82 ~~-~~~~~~~~~f~~iL~iGl~YeW~kGaL~W~ 113 (114)
T MTH00069 82 FP-ENTLFWSTLILILLTLGLIYEWIQGGLEWA 113 (114)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 22-899999999999999999999986753689
No 17
>MTH00012 ND3 NADH dehydrogenase subunit 3; Validated
Probab=100.00 E-value=6.6e-41 Score=234.87 Aligned_cols=111 Identities=38% Similarity=0.778 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999715678-98324174443130004347665247999999999987599999799999602
Q gi|254780852|r 11 ILVFMAIASAIVIVLMISPFIVAFKS-PDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVYFKQ 89 (121)
Q Consensus 11 ili~~~~~~~~~~~~~~~s~~l~~~~-~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw~~~~~~ 89 (121)
+.+++.++..++.+++..++++++|+ +++||.+|||||+||.+++|.|||+|||++|++|++||+|+++++||++..+.
T Consensus 4 ~~~~~~i~~~i~~il~~l~~ll~~k~~~~~eK~spyECGf~p~~~~r~~Fsv~FfliailFliFDvEiv~l~P~~~~~~~ 83 (117)
T MTH00012 4 AALMFAIALLIPIIILGAAWVLAARSTEDREKLSPFECGFDPKNSARIPFSMRFFLLAIIFIVFDIEIVLLMPLPTILHT 83 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999976899998020778166969999877755200899999999999999999999999961
Q ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 438-99999999999999999999983575789
Q gi|254780852|r 90 ITW-LGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 90 ~~~-~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
.+. .++..+.+|+.+|.+|++||||||+|||+
T Consensus 84 ~~~~~~~~~~~~F~~iL~~Gl~yeW~~GaL~W~ 116 (117)
T MTH00012 84 SDSFHTMLTSTLFILILIIGLIHEWKEGSLDWS 116 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 447999999999999999999999986864679
No 18
>MTH00136 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=100.00 E-value=9.2e-41 Score=234.13 Aligned_cols=112 Identities=45% Similarity=0.798 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999971567898324174443130004347665247999999999987599999799999602
Q gi|254780852|r 10 PILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVYFKQ 89 (121)
Q Consensus 10 ~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw~~~~~~ 89 (121)
.+++++.++..++.++...+.+++|+++++||.+|||||+||.+++|.|||+|||++|++|++||+|+++++|++.....
T Consensus 3 ~i~~~l~ia~~l~~i~~~~s~ll~~~~~~~eK~spyECGf~p~~~~r~~Fsv~FylvailFliFDvEi~~l~P~~~~~~~ 82 (116)
T MTH00136 3 LITTILTITTALSLILAIVSFWLPQMNPDAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQL 82 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999994778998000878476979988777767420799999999999999999989999997
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf -43899999999999999999999983575789
Q gi|254780852|r 90 -ITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 90 -~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
.+..+...+..|+.+|.+|++||||||+|||.
T Consensus 83 ~~~~~~~~~~~~fl~iL~~Gl~YeW~kGaL~Wa 115 (116)
T MTH00136 83 PSPTLTFLWATAVLILLTLGLIYEWLQGGLEWA 115 (116)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 032999999999999999999999984743679
No 19
>MTH00106 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=100.00 E-value=7.6e-41 Score=234.55 Aligned_cols=111 Identities=32% Similarity=0.735 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q ss_conf 999999999999999999999715678983241744431300043476652479999999999875999997--999996
Q gi|254780852|r 10 PILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLF--PWAVYF 87 (121)
Q Consensus 10 ~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~--Pw~~~~ 87 (121)
.+++++.++..++.++..++.+++|+++++||.||||||+||.+++|.|||+|||++|++|++||+|+++++ ||++..
T Consensus 2 ~lli~l~i~~~i~~il~~~~~ll~~~~~~~eK~spyECGf~p~~~ar~~Fsi~FylvailFliFDvEi~~l~P~p~a~~~ 81 (115)
T MTH00106 2 NLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQT 81 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 39999999999999999999995757998223888477989998766667312599999999999999999878999982
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 0243899999999999999999999983575789
Q gi|254780852|r 88 KQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 88 ~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
++.+.. ...+.+|+.+|.+|++||||||+|||.
T Consensus 82 ~~~~~~-~~~~~~fi~iL~~Gl~yew~~GaL~W~ 114 (115)
T MTH00106 82 NNLNTM-LTMALLLISLLAASLAYEWTQKGLEWT 114 (115)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 437999-999999999999999999985854678
No 20
>MTH00113 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=100.00 E-value=1.2e-40 Score=233.43 Aligned_cols=111 Identities=44% Similarity=0.853 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q ss_conf 9999999999999999999997156789832417444313000434766524799999999998759999979--99996
Q gi|254780852|r 10 PILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFP--WAVYF 87 (121)
Q Consensus 10 ~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~P--w~~~~ 87 (121)
.++++..++..++.+++.++.+++||+++++|.+|||||+||.+++|.|||+|||++|++|++||+|+++++| |++..
T Consensus 2 ~il~~~~i~~~l~~il~~l~~ll~~~~~~~eK~spyECGf~p~~~~r~~Fsi~FyliailFlIFDvEiv~l~P~~w~~~~ 81 (115)
T MTH00113 2 NLTFMLTLSLALSTILTTLNFWLAQTKPDIEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQL 81 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 08999999999999999999996778998313887076869767778766629999999999999999999528999986
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 0243899999999999999999999983575789
Q gi|254780852|r 88 KQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 88 ~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
++. ..+...+..|+.+|.+|++||||||+|||.
T Consensus 82 ~~~-~~~~~~~~~Fl~iL~~G~~YeW~~GaL~W~ 114 (115)
T MTH00113 82 NSP-TTTLTWATIILLLLTLGLIYEWLQGGLEWA 114 (115)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 326-999999999999999999999986863658
No 21
>pfam00507 Oxidored_q4 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3.
Probab=100.00 E-value=7.8e-39 Score=223.98 Aligned_cols=100 Identities=51% Similarity=1.094 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999715678983-241744431300043476652479999999999875999997999996024389999999
Q gi|254780852|r 21 IVIVLMISPFIVAFKSPDP-EKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMM 99 (121)
Q Consensus 21 ~~~~~~~~s~~l~~~~~~~-~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw~~~~~~~~~~~~~~~~ 99 (121)
++.+++.++.+++||++++ +|.+|||||+||.+++|.|||+|||++|++|++||+|+++++||++++++.+..++.++.
T Consensus 2 i~~i~~~l~~~l~~~~~~~~eK~s~yECGf~p~~~~r~~Fsi~fyliailFliFDvEiv~l~P~~~~~~~~~~~~~~~~~ 81 (102)
T pfam00507 2 LSLILLLLSFLLSPKKPSDREKLSPYECGFDPLGKARLPFSLRFFLIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMF 81 (102)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 98899999999858999951107881779599887777535899999999999999999999999999744099999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999998357578
Q gi|254780852|r 100 VFLGILTVGFIYEWKKGALEW 120 (121)
Q Consensus 100 ~F~~iL~~gl~yew~~G~L~W 120 (121)
+|+.++.+|++||||||+|||
T Consensus 82 ~Fl~iL~~gl~yew~~G~L~W 102 (102)
T pfam00507 82 LFLLILLLGLLYEWKKGALDW 102 (102)
T ss_pred HHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999998186789
No 22
>KOG4662 consensus
Probab=100.00 E-value=5.9e-34 Score=198.34 Aligned_cols=115 Identities=40% Similarity=0.750 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37999999999999999--9999999715678983241744431300043476652479999999999875999997999
Q gi|254780852|r 7 SYAPILVFMAIASAIVI--VLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWA 84 (121)
Q Consensus 7 ~y~~ili~~~~~~~~~~--~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw~ 84 (121)
.+..+.++......... .....+...++++.++||.+||||||||.+++|.|||+|||++|+.|++||+|+++++||+
T Consensus 4 ~f~~~~i~~~~~l~~sa~~~~~l~~~~~s~~~~~~EKsspYECGFdP~~~arlpFsirfflvaI~FliFDLEi~~~lp~~ 83 (122)
T KOG4662 4 AFAIISIFLLILLQVSAIYLAFLISILLSTSSVGKEKSSPYECGFDPLGDARLPFSIRFFLVAITFLIFDLEIVLLLPGA 83 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 69999999999999999999999998630211682009953257886863357214889999999999987899857505
Q ss_pred HHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99602438999-99999999999999999983575789
Q gi|254780852|r 85 VYFKQITWLGF-GSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 85 ~~~~~~~~~~~-~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
...+..|...+ ...++|+.++.+|++|||++|+|+|.
T Consensus 84 l~~d~~~~~~~~~~~fifIlil~~Gl~~ew~~g~l~w~ 121 (122)
T KOG4662 84 LPQDMSGLHPFGIMAFIFILILKIGLYYEWSEGALDWS 121 (122)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 54664055589999999999999999999984377767
No 23
>MTH00092 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=99.95 E-value=3.6e-27 Score=162.69 Aligned_cols=107 Identities=26% Similarity=0.581 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999715678983241744431300043476652479999999999875999997999996024
Q gi|254780852|r 11 ILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVYFKQI 90 (121)
Q Consensus 11 ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw~~~~~~~ 90 (121)
+......+..+...++..+...++|+++.+|.+||||||||.|..|.+||+|||.++++|++||+|++++.+..++
T Consensus 4 l~~v~~~~l~l~~~~y~~~F~~s~k~~~~~K~s~fEcGF~s~g~~~~sfSihFF~i~imFviFDLEiv~fl~l~~~---- 79 (111)
T MTH00092 4 LIMVFVFTLILLMNFYLLNFFISCKDFYKNKISSFECGFDSVKKIQNSFSIHFFKIGLMFVIFDLELVMFLFLIVS---- 79 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHEECCCCCHHHCCCCCCCCHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 4999999999999999998714225586210761002650065662651351599999999999999999999982----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 3899999999999999999999983575789
Q gi|254780852|r 91 TWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 91 ~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
+..++......+..+..|++|||+.|+|.|+
T Consensus 80 d~~s~~~f~~l~~Fi~~gfymEW~~GkL~W~ 110 (111)
T MTH00092 80 DLSSMKSFWLIFIFIFFGFYMEWWYGKLVWN 110 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 0878999999999999999999983614674
No 24
>PRK06073 NADH dehydrogenase subunit A; Validated
Probab=99.87 E-value=1.8e-21 Score=132.75 Aligned_cols=112 Identities=17% Similarity=0.179 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86537999999999999999999999971567898324174443130004347665247999999999987599999799
Q gi|254780852|r 4 LLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPW 83 (121)
Q Consensus 4 ~~~~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw 83 (121)
.+++...+.+...+++.+..+.+.++.+++|++||++|.++||||-.|.|++|.+|++|||.++++|++||+|+++++||
T Consensus 3 ~m~~~~~v~l~~vl~l~~~v~~~~l~~ll~P~rp~p~K~~ryEaGn~p~G~~~~~f~mqYygy~Lmfv~~ep~~v~l~~~ 82 (125)
T PRK06073 3 GMQAALAFGLPFVLLLLLGVGTVYLLKLIAPRRPTPVKVSRYEAGNPPTGEARAPLPMQYYGYLLMYVTLEPIVVLLFLI 82 (125)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 27888999999999999989999999981789989155100123899998713340116999999999998999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99960243899999999999999999999983
Q gi|254780852|r 84 AVYFKQITWLGFGSMMVFLGILTVGFIYEWKK 115 (121)
Q Consensus 84 ~~~~~~~~~~~~~~~~~F~~iL~~gl~yew~~ 115 (121)
+...+......+......+.++.-.+.|+.|.
T Consensus 83 a~~~~~~~~~~l~~~l~~~~~~~p~l~ya~~~ 114 (125)
T PRK06073 83 AIAPYYTFLNLLLLALVGLLLLYPVLYYAYRY 114 (125)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98343779999999999999999999999999
No 25
>MTH00060 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=99.85 E-value=4.4e-21 Score=130.70 Aligned_cols=97 Identities=27% Similarity=0.486 Sum_probs=80.8
Q ss_pred HHHHHHHHHHCC--CCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999999997156--789832417444313000434766524799999999998759999979999960243899999999
Q gi|254780852|r 23 IVLMISPFIVAF--KSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMMV 100 (121)
Q Consensus 23 ~~~~~~s~~l~~--~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw~~~~~~~~~~~~~~~~~ 100 (121)
.+....+...+. ...++++.|||||||+|.+.++..||.+|+...+.|++||+|+.++.|.+. +..-...+.....
T Consensus 17 li~~f~~~~~n~~~~~~~~~W~SsyECGF~s~~~~~n~FS~tyf~llV~FViFDLEISLLLn~p~--qg~~~~nf~~y~~ 94 (116)
T MTH00060 17 LIYFFHSGLWNLKIGSGGFSWVSSFECGFLSHGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPF--QGVLFGNFWYYYF 94 (116)
T ss_pred HHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC--CCEEHHHHHHHHH
T ss_conf 99999888844765554514705031205676102136416789999999998889999754522--5621676999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999983575789
Q gi|254780852|r 101 FLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 101 F~~iL~~gl~yew~~G~L~W~ 121 (121)
|+.++.+|+.+||++|.++|-
T Consensus 95 FL~~L~~Gf~~E~~~Gyv~W~ 115 (116)
T MTH00060 95 FLLLLFLGFVVELLSGYVRWV 115 (116)
T ss_pred HHHHHHHHHHHHHHCCEEEEE
T ss_conf 999999999997661667850
No 26
>TIGR01477 RIFIN variant surface antigen, rifin family; InterPro: IPR006373 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the rifin family of variant surface antigens, encoded by the rif (short for "repetetive interspersed family") genes. This is the largest variant surface antigen family in P. falciparum, with roughly 150 genes present in the genome of this parasite . The function of these proteins is not yet known, but rifins are strongly immunogenic and high levels of anti-rifin antibodies are correlated with rapid parasite clearance and asymptomatic infections . .
Probab=68.28 E-value=8.1 Score=18.93 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 86537999999999999999999999971567898324
Q gi|254780852|r 4 LLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEK 41 (121)
Q Consensus 4 ~~~~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K 41 (121)
..+.|.||...++..++++++|+.+=++||.||+-..|
T Consensus 347 ~~~~~t~IiaSiiAIliIVLIMvIIYLILRYRRKKKMK 384 (395)
T TIGR01477 347 TTAYYTAIIASIIAILIIVLIMVIIYLILRYRRKKKMK 384 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 76677789998999999999999999987543112203
No 27
>KOG4664 consensus
Probab=67.88 E-value=4.3 Score=20.39 Aligned_cols=41 Identities=32% Similarity=0.422 Sum_probs=36.2
Q ss_pred HCHHHHHCHHCCCCCCCCCHH------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 174443130004347665247------99999999998759999979
Q gi|254780852|r 42 LSTYECGFDPFDDARVKFDIR------FCLVSVLFVIFDLEIAFLFP 82 (121)
Q Consensus 42 ~s~yECGf~p~~~~~~~Fsi~------fyliallFliFDvEiv~l~P 82 (121)
.+.|+||++-.+....||++. =|.+|.=|--+||++--++-
T Consensus 169 l~vyFt~~Q~~EY~eapFTIsDgIyGStFfvaTGFHg~Hviig~~fL 215 (261)
T KOG4664 169 LAVYFTGFQLIEYAEAPFTISDGIYGSTFFVATGFHGFHVIIGTLFL 215 (261)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEHHHHHHHHHHHHHHH
T ss_conf 99999998798871576576436430443440115668999987999
No 28
>pfam03348 Serinc Serine incorporator (Serinc). This is a family of eukaryotic membrane proteins which incorporate serine into membranes and facilitate the synthesis of the serine-derived lipids phosphatidylserine and sphingolipid. Members of this family contain 11 transmembrane domains and form intracellular complexes with key enzymes involved in serine and sphingolipid biosynthesis.
Probab=65.86 E-value=9.3 Score=18.62 Aligned_cols=70 Identities=24% Similarity=0.426 Sum_probs=35.4
Q ss_pred HCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHHHHHHHHHHHHCC
Q ss_conf 1300043476652479999999999875999997999996024389999999999---999999999998357
Q gi|254780852|r 48 GFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMMVFL---GILTVGFIYEWKKGA 117 (121)
Q Consensus 48 Gf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw~~~~~~~~~~~~~~~~~F~---~iL~~gl~yew~~G~ 117 (121)
|..+.++.|...+=.|-.+-++.++-=.-..|..|=..-..-.++.+.+...+|+ +|+++-+.|.|.+.=
T Consensus 95 ~v~ss~d~Ra~i~nG~W~~K~l~~~~l~v~~FfIP~~~f~~~~~~i~~~ga~lFiliQLIlLvDFah~Wne~W 167 (426)
T pfam03348 95 GVKSSKDPRAAIQNGFWFFKILLLIGLIVGAFFIPNGFFFFVWMYIGVIGSFLFILIQLILLVDFAHSWNESW 167 (426)
T ss_pred CCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7587868899988478199999999999986434780588999999998789999999999999999999999
No 29
>TIGR00700 GABAtrnsam 4-aminobutyrate transaminase; InterPro: IPR004632 Eukaryotic 4-aminobutyrate aminotransferase (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between, in either set, the most similar enzyme with a distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families. This family describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. Escherichia coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=52.08 E-value=4.7 Score=20.15 Aligned_cols=25 Identities=28% Similarity=0.709 Sum_probs=20.3
Q ss_pred HHHHCHHHHHCHHCCCC--CCCCCHHH
Q ss_conf 32417444313000434--76652479
Q gi|254780852|r 39 PEKLSTYECGFDPFDDA--RVKFDIRF 63 (121)
Q Consensus 39 ~~K~s~yECGf~p~~~~--~~~Fsi~f 63 (121)
..|..||-.||-|+-.. |.|||..|
T Consensus 141 T~Kv~PYK~GFGPFapevY~aP~py~y 167 (427)
T TIGR00700 141 TAKVKPYKIGFGPFAPEVYRAPYPYDY 167 (427)
T ss_pred HHCCCCCCCCCCCCCCCCEECCCCCCC
T ss_conf 522787345788867452116887200
No 30
>PRK08042 formate hydrogenlyase subunit 3; Reviewed
Probab=41.08 E-value=29 Score=15.99 Aligned_cols=26 Identities=15% Similarity=0.511 Sum_probs=12.9
Q ss_pred CCCCHHHHCHHHHHCHHCCCCCCCCCHH
Q ss_conf 7898324174443130004347665247
Q gi|254780852|r 35 KSPDPEKLSTYECGFDPFDDARVKFDIR 62 (121)
Q Consensus 35 ~~~~~~K~s~yECGf~p~~~~~~~Fsi~ 62 (121)
|.+.+.+..|.-||+++ ++|.|.+..
T Consensus 510 r~~~r~~~~~W~CGy~~--~~~m~~ta~ 535 (593)
T PRK08042 510 RLPSRSRGAAWVCGYDH--EKSMVITAH 535 (593)
T ss_pred CCCCCCCCCCCCCCCCC--CCCCEECHH
T ss_conf 76655769984689999--976403353
No 31
>PTZ00046 rifin; Provisional
Probab=39.60 E-value=31 Score=15.86 Aligned_cols=16 Identities=13% Similarity=-0.037 Sum_probs=5.9
Q ss_pred HHCHHCCCCCCCCCHHH
Q ss_conf 31300043476652479
Q gi|254780852|r 47 CGFDPFDDARVKFDIRF 63 (121)
Q Consensus 47 CGf~p~~~~~~~Fsi~f 63 (121)
|+..+.+ ...+|.-.+
T Consensus 241 C~~~~~~-~~~~~C~~~ 256 (348)
T PTZ00046 241 CCGLASN-GSSLFCNSV 256 (348)
T ss_pred CCCCCCC-CCCCCCHHH
T ss_conf 4688899-977730544
No 32
>PHA00726 hypothetical protein
Probab=32.96 E-value=40 Score=15.27 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 999999999999999997156789832417444313000434766524799999999
Q gi|254780852|r 14 FMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLF 70 (121)
Q Consensus 14 ~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallF 70 (121)
+.-++.++-.+++..+.++++.++.++|.+ -.+=++.||++.--=
T Consensus 8 YaeI~lvfD~iml~~sLLFRkpK~k~~~s~------------l~~k~iGyYlViss~ 52 (89)
T PHA00726 8 YAEIVLVFDTIMLITALLFRKPKPKPVKST------------LNHKFIGYYLVGSSV 52 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC------------CCCCCEEEEEHHHHH
T ss_conf 888899998999999998058888610047------------697636765279889
No 33
>TIGR03148 cyt_nit_nrfD cytochrome c nitrite reductase, NrfD subunit. Members of this protein family are NrfD, a highly hydrophobic protein encoded in the nrf operon, which encodes cytochrome c nitrite reductase. This multiple heme-containing enzyme can reduce nitrite to ammonia. Members belong to a broader PFAM protein family, pfam03916, which also contains an NrfD-related subunit of polysulphide reductase.
Probab=29.34 E-value=47 Score=14.93 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999971567898324174443130004347665247999999999987599999
Q gi|254780852|r 10 PILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFL 80 (121)
Q Consensus 10 ~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l 80 (121)
+|.+++.. .++..+...++...+..++++++. +. +.-.+-.-.+.-.-.++++++++|+.--.-
T Consensus 13 ~Ia~YLFl-~GlsaGa~~~s~l~~~~~~~~~~~---~~---~~~r~a~~la~~~l~iGl~~LvlDL~rP~~ 76 (314)
T TIGR03148 13 PIAIYLFL-LGISAGAVMLAILLKRKVPEGNPS---DN---GIIRATAILAPFGIILGLTILIFHLTKPWT 76 (314)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCC---HH---HHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999-889999999999999834002320---12---689999999999999999999998458999
No 34
>KOG0134 consensus
Probab=27.29 E-value=19 Score=16.94 Aligned_cols=12 Identities=50% Similarity=1.079 Sum_probs=8.1
Q ss_pred HHCHHHHHCHHC
Q ss_conf 417444313000
Q gi|254780852|r 41 KLSTYECGFDPF 52 (121)
Q Consensus 41 K~s~yECGf~p~ 52 (121)
++..||||||-+
T Consensus 180 ak~~~e~GFDGV 191 (400)
T KOG0134 180 AKAAYECGFDGV 191 (400)
T ss_pred HHHHHHCCCCEE
T ss_conf 998986388758
Done!